# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF824 PF05688.6 gi|159040593|ref|YP_001539845.1| - 0.014 15.0 1.8 0.069 12.7 0.1 3.1 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) DUF3945 PF13101.1 gi|159040593|ref|YP_001539845.1| - 0.018 14.3 0.0 0.15 11.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) Peptidase_S8 PF00082.17 gi|159040594|ref|YP_001539846.1| - 8.9e-07 28.3 0.0 1.7e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Subtilase family CarboxypepD_reg PF13620.1 gi|159040595|ref|YP_001539847.1| - 1.1e-08 35.0 0.6 0.0023 17.9 0.1 4.3 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|159040595|ref|YP_001539847.1| - 0.00018 21.2 0.5 0.0017 18.1 0.1 2.9 2 0 0 2 2 2 1 PEGA domain DUF4480 PF13715.1 gi|159040595|ref|YP_001539847.1| - 0.006 16.6 0.6 16 5.6 0.1 3.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) Ribosomal_S24e PF01282.14 gi|159040596|ref|YP_001539848.1| - 1.4e-15 56.8 0.1 2.4e-15 56.0 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein S24e DNA_pol3_a_NII PF11490.3 gi|159040596|ref|YP_001539848.1| - 0.093 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus II AFOR_C PF01314.13 gi|159040597|ref|YP_001539849.1| - 1.7e-111 372.5 0.4 2.1e-111 372.3 0.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|159040597|ref|YP_001539849.1| - 1.6e-77 259.3 0.0 2.8e-77 258.6 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Na_H_Exchanger PF00999.16 gi|159040598|ref|YP_001539850.1| - 4.5e-35 120.9 55.9 5.6e-35 120.5 38.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.23 gi|159040598|ref|YP_001539850.1| - 1.7e-14 53.3 1.4 3.5e-06 26.7 0.2 2.7 2 0 0 2 2 2 2 CBS domain Cpn60_TCP1 PF00118.19 gi|159040599|ref|YP_001539851.1| - 5.9e-167 556.1 1.4 6.8e-167 555.9 1.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SHOCT PF09851.4 gi|159040599|ref|YP_001539851.1| - 0.023 14.1 0.0 0.071 12.6 0.0 1.9 1 0 0 1 1 1 0 Short C-terminal domain Hydrolase PF00702.21 gi|159040599|ref|YP_001539851.1| - 2 8.7 6.7 11 6.3 3.0 2.8 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Semialdhyde_dh PF01118.19 gi|159040600|ref|YP_001539852.1| - 6.4e-31 107.1 0.0 9.8e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|159040600|ref|YP_001539852.1| - 4.7e-25 88.5 0.0 6.5e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.1 gi|159040600|ref|YP_001539852.1| - 0.00073 19.5 0.1 0.0023 17.9 0.0 1.9 2 1 0 2 2 2 1 NADH(P)-binding DapB_N PF01113.15 gi|159040600|ref|YP_001539852.1| - 0.0052 16.6 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.15 gi|159040600|ref|YP_001539852.1| - 0.0056 16.1 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.17 gi|159040600|ref|YP_001539852.1| - 0.026 15.0 0.0 0.063 13.8 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|159040600|ref|YP_001539852.1| - 0.031 14.8 0.0 0.094 13.2 0.0 1.8 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase CoA_binding PF02629.14 gi|159040600|ref|YP_001539852.1| - 0.039 14.4 0.0 0.082 13.4 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain Epimerase PF01370.16 gi|159040600|ref|YP_001539852.1| - 0.074 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.23 gi|159040601|ref|YP_001539853.1| - 3.5e-42 144.6 0.1 4.6e-42 144.2 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L18p PF00861.17 gi|159040602|ref|YP_001539854.1| - 2.1e-37 127.9 0.1 2.9e-37 127.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|159040602|ref|YP_001539854.1| - 5.7e-12 46.0 1.3 8.7e-12 45.4 0.9 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|159040603|ref|YP_001539855.1| - 1.1e-45 155.0 10.3 1.2e-45 154.9 7.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e TrmB PF01978.14 gi|159040603|ref|YP_001539855.1| - 0.0074 15.9 2.3 10 5.9 0.1 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF4019 PF13211.1 gi|159040603|ref|YP_001539855.1| - 0.013 15.7 0.3 0.031 14.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4019) DUF4258 PF14076.1 gi|159040603|ref|YP_001539855.1| - 0.029 14.3 0.3 0.94 9.5 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) Mrr_N PF14338.1 gi|159040603|ref|YP_001539855.1| - 0.039 14.0 3.0 2.1 8.5 0.3 3.0 3 1 0 3 3 3 0 Mrr N-terminal domain HTH_Crp_2 PF13545.1 gi|159040603|ref|YP_001539855.1| - 0.056 13.2 1.0 13 5.6 0.1 2.7 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|159040603|ref|YP_001539855.1| - 0.35 11.1 5.8 2.4 8.4 0.2 3.5 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|159040604|ref|YP_001539856.1| - 4e-37 126.6 0.7 5.8e-37 126.1 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Lact-deh-memb PF09330.6 gi|159040605|ref|YP_001539857.1| - 0.034 13.5 0.1 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 D-lactate dehydrogenase, membrane binding ThiI PF02568.9 gi|159040606|ref|YP_001539858.1| - 2.3e-51 174.0 0.0 4e-51 173.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|159040606|ref|YP_001539858.1| - 7.7e-18 64.7 0.0 1.8e-17 63.5 0.0 1.6 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|159040606|ref|YP_001539858.1| - 0.0002 20.6 0.0 0.16 11.2 0.0 2.5 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Pyrophosphatase PF00719.14 gi|159040607|ref|YP_001539859.1| - 2.1e-56 189.6 0.0 2.6e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase AA_permease_2 PF13520.1 gi|159040609|ref|YP_001539861.1| - 2.2e-28 98.9 63.6 2.8e-28 98.6 44.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159040609|ref|YP_001539861.1| - 1.7 6.9 55.2 2.8 6.1 38.2 1.3 1 1 0 1 1 1 0 Amino acid permease DAO PF01266.19 gi|159040610|ref|YP_001539862.1| - 1.9e-14 53.3 0.1 2.9e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|159040610|ref|YP_001539862.1| - 1.9e-11 44.2 0.4 0.0002 21.3 0.1 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|159040610|ref|YP_001539862.1| - 1.9e-10 39.8 0.0 8.1e-05 21.2 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|159040610|ref|YP_001539862.1| - 1.5e-08 33.9 2.2 0.0014 17.5 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|159040610|ref|YP_001539862.1| - 1.7e-06 27.1 1.2 0.00017 20.6 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.7 gi|159040610|ref|YP_001539862.1| - 4.5e-06 25.8 0.0 8.1e-05 21.6 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|159040610|ref|YP_001539862.1| - 1e-05 24.7 0.1 0.00022 20.4 0.0 2.6 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.1 gi|159040610|ref|YP_001539862.1| - 1.2e-05 25.2 0.2 5.9e-05 23.0 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|159040610|ref|YP_001539862.1| - 2.7e-05 23.9 0.0 0.00074 19.3 0.0 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|159040610|ref|YP_001539862.1| - 3.8e-05 23.8 0.0 0.058 13.4 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159040610|ref|YP_001539862.1| - 0.0028 18.0 0.1 1.1 9.7 0.0 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|159040610|ref|YP_001539862.1| - 0.004 16.2 0.0 0.0065 15.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|159040610|ref|YP_001539862.1| - 0.069 11.7 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_oxidored PF12831.2 gi|159040610|ref|YP_001539862.1| - 0.1 11.6 0.2 0.36 9.8 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Adenylsucc_synt PF00709.16 gi|159040611|ref|YP_001539863.1| - 5.5e-74 249.3 0.0 2.1e-36 125.5 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.15 gi|159040612|ref|YP_001539864.1| - 2.6e-37 128.7 0.0 3.9e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|159040612|ref|YP_001539864.1| - 6.4e-33 113.0 0.1 1.6e-32 111.7 0.1 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF4341 PF14241.1 gi|159040612|ref|YP_001539864.1| - 0.017 14.8 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4341) DUF1297 PF06973.7 gi|159040613|ref|YP_001539865.1| - 5e-78 260.7 0.0 6.3e-78 260.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|159040613|ref|YP_001539865.1| - 8.2e-48 161.2 0.0 1.2e-47 160.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|159040613|ref|YP_001539865.1| - 1.4e-06 28.1 0.0 1.1e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain DUF1297 PF06973.7 gi|159040614|ref|YP_001539866.1| - 2.4e-64 216.1 0.0 3.3e-64 215.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|159040614|ref|YP_001539866.1| - 1e-39 135.0 0.0 1.7e-39 134.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|159040614|ref|YP_001539866.1| - 0.00012 21.8 0.0 0.00044 20.0 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159040614|ref|YP_001539866.1| - 0.0026 17.6 0.0 0.0059 16.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|159040614|ref|YP_001539866.1| - 0.081 12.2 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|159040614|ref|YP_001539866.1| - 0.15 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain TTL PF03133.10 gi|159040614|ref|YP_001539866.1| - 0.17 10.7 0.0 0.32 9.8 0.0 1.3 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family Hexapep PF00132.19 gi|159040615|ref|YP_001539867.1| - 1.6e-20 71.5 13.4 3.4e-09 35.8 0.9 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|159040615|ref|YP_001539867.1| - 5.5e-08 32.2 10.8 0.00075 19.0 0.7 3.5 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase HupF_HypC PF01455.13 gi|159040615|ref|YP_001539867.1| - 0.05 13.5 4.2 0.87 9.6 0.6 3.4 2 1 1 3 3 3 0 HupF/HypC family TGT PF01702.13 gi|159040616|ref|YP_001539868.1| - 1.9e-43 148.4 0.0 2.8e-43 147.8 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Lsm_C PF14894.1 gi|159040617|ref|YP_001539869.1| - 6.2e-26 89.7 2.3 1.1e-25 88.8 1.6 1.4 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.17 gi|159040617|ref|YP_001539869.1| - 2.2e-09 36.7 2.1 3.1e-09 36.2 0.3 1.9 2 0 0 2 2 2 1 LSM domain SM-ATX PF14438.1 gi|159040617|ref|YP_001539869.1| - 0.0089 15.9 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain PepX_C PF08530.5 gi|159040618|ref|YP_001539870.1| - 0.03 14.2 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Cpn60_TCP1 PF00118.19 gi|159040619|ref|YP_001539871.1| - 3.5e-170 566.7 8.8 4e-170 566.5 6.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Zw10 PF06248.8 gi|159040619|ref|YP_001539871.1| - 0.0083 14.3 0.0 0.76 7.8 0.0 2.4 2 1 1 3 3 3 2 Centromere/kinetochore Zw10 NUDIX PF00293.23 gi|159040620|ref|YP_001539872.1| - 1.7e-14 53.6 0.0 2e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Glu_synthase PF01645.12 gi|159040621|ref|YP_001539873.1| - 4.2e-99 331.9 6.8 5.1e-96 321.7 1.7 2.4 2 1 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|159040621|ref|YP_001539873.1| - 5.3e-12 45.2 11.4 5.1e-07 28.8 3.3 3.6 4 0 0 4 4 4 3 FMN-dependent dehydrogenase Glu_syn_central PF04898.9 gi|159040621|ref|YP_001539873.1| - 3.9e-10 39.4 0.1 6.6e-06 25.5 0.0 2.9 3 0 0 3 3 3 2 Glutamate synthase central domain DHO_dh PF01180.16 gi|159040621|ref|YP_001539873.1| - 0.00016 20.7 0.7 0.00016 20.7 0.5 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|159040621|ref|YP_001539873.1| - 0.0029 16.6 0.5 0.013 14.4 0.1 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|159040621|ref|YP_001539873.1| - 0.0039 16.3 9.2 0.03 13.4 4.9 2.2 1 1 1 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.20 gi|159040621|ref|YP_001539873.1| - 0.0065 15.4 5.5 0.0065 15.4 3.8 2.2 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain ThiG PF05690.9 gi|159040621|ref|YP_001539873.1| - 0.06 12.4 3.0 0.1 11.6 0.6 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|159040621|ref|YP_001539873.1| - 0.2 10.8 6.5 0.74 9.0 0.1 3.0 2 1 1 3 3 3 0 PcrB family GXGXG PF01493.14 gi|159040622|ref|YP_001539874.1| - 1.8e-28 98.9 16.1 3.1e-28 98.1 8.6 2.5 2 1 0 2 2 2 1 GXGXG motif GATase_6 PF13522.1 gi|159040622|ref|YP_001539874.1| - 1e-11 44.8 0.0 2.5e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|159040622|ref|YP_001539874.1| - 5.7e-11 41.7 0.0 1.8e-10 40.1 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|159040622|ref|YP_001539874.1| - 0.0003 20.4 0.0 0.0013 18.4 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain Ribonuc_L-PSP PF01042.16 gi|159040623|ref|YP_001539875.1| - 1.2e-28 99.2 0.0 1.5e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_10 PF04967.7 gi|159040624|ref|YP_001539876.1| - 2.9e-06 26.7 0.1 5.3e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain DUF1955 PF09205.5 gi|159040624|ref|YP_001539876.1| - 0.025 14.0 0.3 0.051 13.1 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1955) HTH_27 PF13463.1 gi|159040624|ref|YP_001539876.1| - 0.026 14.8 0.1 0.2 12.0 0.0 2.4 3 1 0 3 3 3 0 Winged helix DNA-binding domain SBP_bac_5 PF00496.17 gi|159040625|ref|YP_001539877.1| - 1.3e-24 86.7 6.9 1.3e-23 83.4 4.8 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159040625|ref|YP_001539877.1| - 0.0071 16.0 10.9 0.0071 16.0 7.5 1.6 2 0 0 2 2 2 1 Rifin/stevor family Ribosomal_S13_N PF08069.7 gi|159040626|ref|YP_001539878.1| - 0.15 11.9 0.0 0.51 10.2 0.0 1.9 2 0 0 2 2 2 0 Ribosomal S13/S15 N-terminal domain Nitro_FeMo-Co PF02579.12 gi|159040627|ref|YP_001539879.1| - 6.4e-11 42.1 0.3 9.6e-11 41.6 0.0 1.5 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor DNase-RNase PF02577.9 gi|159040628|ref|YP_001539880.1| - 4.5e-42 142.4 0.0 5.4e-42 142.2 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease PhdYeFM_antitox PF02604.14 gi|159040628|ref|YP_001539880.1| - 0.049 13.2 0.0 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Trypsin_2 PF13365.1 gi|159040629|ref|YP_001539881.1| - 2.3e-19 69.5 0.5 2.3e-19 69.5 0.3 1.8 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|159040629|ref|YP_001539881.1| - 1.4e-16 60.7 0.0 2.4e-16 59.9 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|159040629|ref|YP_001539881.1| - 1.1e-13 50.8 0.1 2.5e-13 49.7 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|159040629|ref|YP_001539881.1| - 3.8e-05 23.7 0.0 9.8e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S32 PF05579.8 gi|159040629|ref|YP_001539881.1| - 0.014 14.4 1.2 0.22 10.4 0.0 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S7 PF00949.16 gi|159040629|ref|YP_001539881.1| - 0.04 13.3 0.1 0.073 12.4 0.1 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S46 PF10459.4 gi|159040629|ref|YP_001539881.1| - 0.044 12.1 0.4 0.061 11.7 0.3 1.1 1 0 0 1 1 1 0 Peptidase S46 PDZ_1 PF12812.2 gi|159040629|ref|YP_001539881.1| - 0.048 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 PDZ-like domain CdhC PF03598.10 gi|159040630|ref|YP_001539882.1| - 0.015 13.7 0.0 0.022 13.2 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit XPG_I PF00867.13 gi|159040632|ref|YP_001539884.1| - 1.2e-27 95.7 0.0 2.1e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|159040632|ref|YP_001539884.1| - 7.4e-24 83.9 0.0 1.5e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|159040632|ref|YP_001539884.1| - 2.9e-07 30.6 0.0 8.1e-07 29.2 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.1 gi|159040632|ref|YP_001539884.1| - 0.0007 19.7 0.0 0.012 15.7 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|159040632|ref|YP_001539884.1| - 0.0023 17.7 0.0 0.0074 16.1 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF3560 PF12083.3 gi|159040632|ref|YP_001539884.1| - 1.5 8.8 4.3 2.9 7.9 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3560) MobB PF03205.9 gi|159040633|ref|YP_001539885.1| - 1.5e-07 31.2 0.2 2.9e-07 30.2 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|159040633|ref|YP_001539885.1| - 3.9e-05 23.1 0.0 6.8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|159040633|ref|YP_001539885.1| - 0.002 16.9 0.4 0.0031 16.3 0.3 1.2 1 0 0 1 1 1 1 ArgK protein APS_kinase PF01583.15 gi|159040633|ref|YP_001539885.1| - 0.029 14.0 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ATP_bind_1 PF03029.12 gi|159040633|ref|YP_001539885.1| - 0.048 13.2 0.3 0.082 12.4 0.2 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|159040633|ref|YP_001539885.1| - 0.096 12.1 0.8 0.24 10.8 0.6 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|159040633|ref|YP_001539885.1| - 0.1 12.0 0.4 0.14 11.5 0.3 1.2 1 0 0 1 1 1 0 AAA-like domain GTP_EFTU PF00009.22 gi|159040633|ref|YP_001539885.1| - 0.11 11.9 0.2 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain PCNA_N PF00705.13 gi|159040634|ref|YP_001539886.1| - 1.4e-10 40.7 0.0 1e-09 37.9 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|159040634|ref|YP_001539886.1| - 3.2e-08 33.5 0.2 7.7e-08 32.3 0.1 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|159040634|ref|YP_001539886.1| - 0.029 13.4 0.0 0.058 12.5 0.0 1.4 1 1 0 1 1 1 0 Rad9 GPI-anchored PF10342.4 gi|159040634|ref|YP_001539886.1| - 0.076 13.4 0.7 4.8 7.7 0.0 2.9 3 0 0 3 3 3 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Epimerase PF01370.16 gi|159040635|ref|YP_001539887.1| - 0.0013 18.2 0.1 0.0047 16.3 0.1 1.7 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family HutP PF09021.6 gi|159040635|ref|YP_001539887.1| - 0.075 13.2 0.1 0.15 12.2 0.1 1.5 1 1 0 1 1 1 0 HutP Thioredoxin PF00085.15 gi|159040636|ref|YP_001539888.1| - 4.8e-24 84.0 0.0 6.5e-24 83.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|159040636|ref|YP_001539888.1| - 6e-07 29.6 0.2 5.3e-05 23.3 0.2 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|159040636|ref|YP_001539888.1| - 4.8e-05 22.9 0.1 6.3e-05 22.5 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|159040636|ref|YP_001539888.1| - 7.8e-05 22.7 0.2 0.03 14.4 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|159040636|ref|YP_001539888.1| - 0.00025 20.7 0.1 0.00059 19.5 0.0 1.7 1 1 1 2 2 2 1 Thioredoxin domain Phosducin PF02114.11 gi|159040636|ref|YP_001539888.1| - 0.002 16.8 0.0 0.0022 16.7 0.0 1.2 1 1 0 1 1 1 1 Phosducin HyaE PF07449.6 gi|159040636|ref|YP_001539888.1| - 0.0051 16.7 0.1 0.2 11.5 0.0 2.3 3 0 0 3 3 3 1 Hydrogenase-1 expression protein HyaE Fijivirus_P9-2 PF06837.6 gi|159040637|ref|YP_001539889.1| - 0.038 13.1 0.5 0.044 12.9 0.3 1.2 1 0 0 1 1 1 0 Fijivirus P9-2 protein Cation_efflux PF01545.16 gi|159040637|ref|YP_001539889.1| - 0.12 11.4 0.5 0.33 9.9 0.3 1.7 1 1 0 1 1 1 0 Cation efflux family AsmA PF05170.9 gi|159040637|ref|YP_001539889.1| - 0.4 9.2 1.9 0.89 8.0 0.5 1.8 2 0 0 2 2 2 0 AsmA family NurA PF09376.5 gi|159040638|ref|YP_001539890.1| - 5.7e-18 65.2 0.7 2.1e-17 63.4 0.5 1.8 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.12 gi|159040639|ref|YP_001539891.1| - 9e-18 64.9 0.5 2.4e-17 63.5 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|159040639|ref|YP_001539891.1| - 1.5e-16 60.7 1.7 1.2e-14 54.4 1.2 2.1 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|159040639|ref|YP_001539891.1| - 4.2e-09 35.5 0.0 2.8e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|159040639|ref|YP_001539891.1| - 5.6e-06 25.9 0.1 0.0026 17.2 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|159040639|ref|YP_001539891.1| - 0.00048 20.2 0.0 0.39 10.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain MobB PF03205.9 gi|159040639|ref|YP_001539891.1| - 0.00057 19.6 0.0 0.0016 18.1 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|159040639|ref|YP_001539891.1| - 0.015 15.3 0.1 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|159040639|ref|YP_001539891.1| - 0.02 14.5 1.0 0.053 13.2 0.0 2.0 2 1 0 2 2 2 0 Archaeal ATPase Zot PF05707.7 gi|159040639|ref|YP_001539891.1| - 0.022 14.2 0.1 0.046 13.1 0.0 1.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) MMR_HSR1 PF01926.18 gi|159040639|ref|YP_001539891.1| - 0.043 13.7 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF815 PF05673.8 gi|159040639|ref|YP_001539891.1| - 0.051 12.4 0.0 0.14 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|159040639|ref|YP_001539891.1| - 0.087 13.0 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase VWA_2 PF13519.1 gi|159040640|ref|YP_001539892.1| - 1.7e-25 90.1 0.0 2.9e-25 89.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|159040640|ref|YP_001539892.1| - 1.8e-18 66.8 0.0 8e-18 64.7 0.0 2.1 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|159040640|ref|YP_001539892.1| - 1.4e-11 44.0 0.0 4.6e-11 42.2 0.0 1.8 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein DUF58 PF01882.13 gi|159040640|ref|YP_001539892.1| - 1.3e-08 34.8 0.0 6.9e-07 29.3 0.0 3.0 3 0 0 3 3 3 1 Protein of unknown function DUF58 VWA_3 PF13768.1 gi|159040640|ref|YP_001539892.1| - 4.1e-08 33.0 0.0 1.5e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|159040640|ref|YP_001539892.1| - 7.1e-08 32.5 0.0 1.4e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 vWA found in TerF C terminus DUF444 PF04285.7 gi|159040640|ref|YP_001539892.1| - 0.035 12.7 0.1 0.069 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF444) DUF2201 PF09967.4 gi|159040640|ref|YP_001539892.1| - 0.051 13.5 0.0 0.21 11.6 0.0 2.0 2 1 0 2 2 2 0 VWA-like domain (DUF2201) MFS_1 PF07690.11 gi|159040641|ref|YP_001539893.1| - 5.5e-39 133.8 58.4 5.5e-39 133.8 40.5 3.3 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159040641|ref|YP_001539893.1| - 3.1e-09 35.9 41.4 5.8e-08 31.7 7.7 4.0 4 1 0 4 4 4 3 Sugar (and other) transporter Thioredoxin_4 PF13462.1 gi|159040642|ref|YP_001539894.1| - 2e-10 40.9 0.0 3.2e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin AAA_21 PF13304.1 gi|159040643|ref|YP_001539895.1| - 2.6e-11 44.0 0.2 1.8e-05 24.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|159040643|ref|YP_001539895.1| - 1.5e-07 31.9 0.0 1.8e-07 31.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159040643|ref|YP_001539895.1| - 5.3e-06 25.8 0.0 0.00013 21.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|159040643|ref|YP_001539895.1| - 0.0022 17.5 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|159040643|ref|YP_001539895.1| - 0.023 13.7 0.1 0.03 13.3 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|159040643|ref|YP_001539895.1| - 0.03 14.2 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|159040643|ref|YP_001539895.1| - 0.062 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Dynamin family KTI12 PF08433.5 gi|159040643|ref|YP_001539895.1| - 0.066 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|159040643|ref|YP_001539895.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|159040643|ref|YP_001539895.1| - 0.12 11.8 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|159040643|ref|YP_001539895.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|159040643|ref|YP_001539895.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF1408 PF07193.6 gi|159040645|ref|YP_001539897.1| - 0.045 13.2 0.3 0.27 10.8 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1408) Oxidored_q2 PF00420.19 gi|159040645|ref|YP_001539897.1| - 0.15 11.6 4.0 0.13 11.8 1.1 2.2 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L adh_short_C2 PF13561.1 gi|159040646|ref|YP_001539898.1| - 3.3e-34 118.7 0.5 3.9e-34 118.4 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|159040646|ref|YP_001539898.1| - 3.4e-31 108.4 0.3 4.5e-31 108.0 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|159040646|ref|YP_001539898.1| - 1.9e-09 37.4 0.1 2.7e-09 36.9 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|159040646|ref|YP_001539898.1| - 0.0091 15.4 0.3 0.016 14.6 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.14 gi|159040646|ref|YP_001539898.1| - 0.039 13.1 0.2 0.1 11.7 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF460 PF04312.8 gi|159040646|ref|YP_001539898.1| - 0.062 12.8 0.4 0.2 11.1 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF460) 5TM-5TMR_LYT PF07694.7 gi|159040647|ref|YP_001539899.1| - 0.029 13.7 2.6 0.033 13.5 1.8 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT O-antigen_lig PF13425.1 gi|159040647|ref|YP_001539899.1| - 0.054 13.4 3.6 0.057 13.4 2.5 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF1212 PF06738.7 gi|159040647|ref|YP_001539899.1| - 0.23 10.9 2.4 0.27 10.6 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) Oxidored_q3 PF00499.15 gi|159040647|ref|YP_001539899.1| - 0.24 11.1 7.0 0.28 10.9 4.9 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Syndecan PF01034.15 gi|159040647|ref|YP_001539899.1| - 1.4 8.6 5.2 4.9 6.8 1.0 2.1 2 0 0 2 2 2 0 Syndecan domain DUF3561 PF12084.3 gi|159040647|ref|YP_001539899.1| - 1.9 8.3 6.8 3.8 7.3 4.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3561) NTP_transferase PF00483.18 gi|159040648|ref|YP_001539900.1| - 4.1e-23 81.9 0.0 4.7e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|159040648|ref|YP_001539900.1| - 7.4e-08 32.6 0.0 8.8e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain MASE2 PF05230.6 gi|159040649|ref|YP_001539901.1| - 0.019 14.8 0.3 0.095 12.6 0.2 2.3 1 0 0 1 1 1 0 MASE2 domain FUR PF01475.14 gi|159040650|ref|YP_001539902.1| - 8.6e-25 86.9 0.0 9.8e-25 86.8 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.2 gi|159040650|ref|YP_001539902.1| - 3.1e-05 23.7 0.0 6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2551 PF10826.3 gi|159040650|ref|YP_001539902.1| - 0.0053 16.6 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|159040650|ref|YP_001539902.1| - 0.0087 16.1 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_32 PF13565.1 gi|159040650|ref|YP_001539902.1| - 0.011 16.5 0.0 0.017 15.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|159040650|ref|YP_001539902.1| - 0.02 14.4 0.1 0.061 12.9 0.1 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|159040650|ref|YP_001539902.1| - 0.055 13.1 0.1 22 4.8 0.0 3.1 2 1 1 3 3 3 0 Homeodomain-like domain Helicase_C PF00271.26 gi|159040650|ref|YP_001539902.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 Helicase conserved C-terminal domain TrmB PF01978.14 gi|159040650|ref|YP_001539902.1| - 0.14 11.8 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rubrerythrin PF02915.12 gi|159040651|ref|YP_001539903.1| - 4.7e-22 78.7 5.2 1.5e-21 77.1 3.5 1.8 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|159040651|ref|YP_001539903.1| - 1.9e-06 27.7 3.5 0.0011 18.7 0.3 2.1 1 1 1 2 2 2 2 Ferritin-like domain Ferritin_2 PF13668.1 gi|159040651|ref|YP_001539903.1| - 0.0017 18.2 0.9 0.0032 17.4 0.5 1.5 1 1 0 1 1 1 1 Ferritin-like domain PocR PF10114.4 gi|159040651|ref|YP_001539903.1| - 0.11 11.6 0.1 0.17 10.9 0.1 1.3 1 0 0 1 1 1 0 Sensory domain found in PocR DUF3501 PF12007.3 gi|159040652|ref|YP_001539904.1| - 8e-52 175.7 0.0 9e-52 175.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) TMP-TENI PF02581.12 gi|159040653|ref|YP_001539905.1| - 3.1e-57 192.5 0.2 3.6e-57 192.3 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|159040653|ref|YP_001539905.1| - 5e-05 22.6 2.2 0.00011 21.4 1.5 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase DeoC PF01791.4 gi|159040653|ref|YP_001539905.1| - 0.037 13.3 2.0 0.24 10.6 1.4 2.3 1 1 0 1 1 1 0 DeoC/LacD family aldolase DUF561 PF04481.7 gi|159040653|ref|YP_001539905.1| - 0.044 12.7 0.1 5 6.0 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|159040653|ref|YP_001539905.1| - 0.052 12.8 3.5 0.13 11.5 0.1 2.6 2 2 1 3 3 3 0 Histidine biosynthesis protein HK PF02110.10 gi|159040654|ref|YP_001539906.1| - 2.3e-87 292.2 1.8 2.7e-87 292.0 1.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|159040654|ref|YP_001539906.1| - 0.00029 20.0 0.4 0.00046 19.4 0.3 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|159040654|ref|YP_001539906.1| - 0.00059 19.1 0.4 0.00068 18.9 0.3 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Glu_synthase PF01645.12 gi|159040655|ref|YP_001539907.1| - 2.5e-23 82.5 2.2 8.9e-23 80.7 1.5 1.9 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|159040655|ref|YP_001539907.1| - 9.6e-20 70.7 3.6 1.6e-12 46.9 1.2 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|159040655|ref|YP_001539907.1| - 0.0004 19.6 0.4 0.00059 19.0 0.3 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase tRNA-synt_2 PF00152.15 gi|159040656|ref|YP_001539908.1| - 1.1e-53 182.1 0.0 1.9e-53 181.4 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) MMR_HSR1_C PF08438.5 gi|159040657|ref|YP_001539909.1| - 1.8e-36 124.6 0.1 4.6e-36 123.3 0.0 1.7 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|159040657|ref|YP_001539909.1| - 5.8e-17 61.7 0.0 1.7e-16 60.1 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|159040657|ref|YP_001539909.1| - 2.2e-09 37.0 0.0 4.7e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|159040657|ref|YP_001539909.1| - 1.4e-06 27.6 0.2 0.00031 20.0 0.0 2.6 2 0 0 2 2 2 2 Ferrous iron transport protein B DUF460 PF04312.8 gi|159040657|ref|YP_001539909.1| - 0.0089 15.5 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF460) GTP_EFTU PF00009.22 gi|159040657|ref|YP_001539909.1| - 0.012 15.0 0.5 4.9 6.5 0.0 2.6 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain HARE-HTH PF05066.8 gi|159040658|ref|YP_001539910.1| - 0.094 13.0 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain Band_7 PF01145.20 gi|159040659|ref|YP_001539911.1| - 3e-33 115.2 1.2 3.9e-33 114.8 0.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|159040659|ref|YP_001539911.1| - 0.00066 19.2 0.1 0.0011 18.5 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family Pox_mRNA-cap PF03341.8 gi|159040659|ref|YP_001539911.1| - 0.094 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Poxvirus mRNA capping enzyme, small subunit NfeD PF01957.13 gi|159040660|ref|YP_001539912.1| - 1.2e-16 61.2 4.9 1.2e-16 61.2 3.4 3.0 3 1 1 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|159040660|ref|YP_001539912.1| - 6e-05 22.7 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|159040660|ref|YP_001539912.1| - 0.0011 17.8 0.1 0.0022 16.8 0.0 1.5 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Tetraspannin PF00335.15 gi|159040661|ref|YP_001539913.1| - 3.7e-05 23.0 2.5 4.4e-05 22.8 1.7 1.0 1 0 0 1 1 1 1 Tetraspanin family DUF2919 PF11143.3 gi|159040661|ref|YP_001539913.1| - 0.045 13.5 0.8 0.057 13.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2919) DUF2207 PF09972.4 gi|159040661|ref|YP_001539913.1| - 0.074 11.6 3.5 0.075 11.6 2.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Arif-1 PF06770.6 gi|159040661|ref|YP_001539913.1| - 0.085 12.2 1.1 0.1 11.9 0.7 1.1 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) PMP22_Claudin PF00822.15 gi|159040661|ref|YP_001539913.1| - 0.092 12.4 0.7 0.098 12.3 0.5 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family E1-E2_ATPase PF00122.15 gi|159040661|ref|YP_001539913.1| - 0.3 10.0 2.9 0.37 9.7 2.0 1.1 1 0 0 1 1 1 0 E1-E2 ATPase DUF3753 PF12575.3 gi|159040661|ref|YP_001539913.1| - 0.54 10.0 6.0 6.3 6.6 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) zf-DHHC PF01529.15 gi|159040661|ref|YP_001539913.1| - 0.65 9.3 2.8 0.75 9.1 2.0 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase FxsA PF04186.8 gi|159040663|ref|YP_001539915.1| - 0.006 16.1 2.6 0.18 11.4 0.2 2.1 2 0 0 2 2 2 1 FxsA cytoplasmic membrane protein OppC_N PF12911.2 gi|159040663|ref|YP_001539915.1| - 0.037 13.3 1.6 0.037 13.3 1.1 2.6 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Nitrate_red_gam PF02665.9 gi|159040663|ref|YP_001539915.1| - 0.078 12.3 1.3 0.11 11.8 0.1 1.8 2 1 0 2 2 2 0 Nitrate reductase gamma subunit Neurensin PF14927.1 gi|159040663|ref|YP_001539915.1| - 0.18 11.1 2.2 3.1 7.1 0.1 2.2 2 0 0 2 2 2 0 Neurensin NfeD PF01957.13 gi|159040663|ref|YP_001539915.1| - 0.2 11.8 6.7 0.85 9.7 0.3 2.2 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF4064 PF13273.1 gi|159040663|ref|YP_001539915.1| - 0.31 11.1 9.5 2.7 8.1 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Cation_ATPase_C PF00689.16 gi|159040663|ref|YP_001539915.1| - 0.35 10.3 6.8 0.48 9.9 4.7 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF872 PF05915.7 gi|159040663|ref|YP_001539915.1| - 0.49 10.2 5.0 7.6 6.4 0.1 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF2371 PF10177.4 gi|159040663|ref|YP_001539915.1| - 0.57 10.0 8.5 1.6 8.6 0.1 2.2 1 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF2627 PF11118.3 gi|159040663|ref|YP_001539915.1| - 1.8 8.6 6.6 0.64 10.1 1.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) DUF3040 PF11239.3 gi|159040663|ref|YP_001539915.1| - 2 8.5 5.8 16 5.5 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF202 PF02656.10 gi|159040663|ref|YP_001539915.1| - 2.4 8.4 9.2 0.26 11.5 1.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) SdpI PF13630.1 gi|159040663|ref|YP_001539915.1| - 3.5 7.3 11.1 8.6 6.1 2.2 2.7 2 0 0 2 2 2 0 SdpI/YhfL protein family IncA PF04156.9 gi|159040663|ref|YP_001539915.1| - 4.5 6.8 11.7 6.4 6.3 1.8 2.1 2 0 0 2 2 2 0 IncA protein DUF1469 PF07332.6 gi|159040663|ref|YP_001539915.1| - 5.7 6.6 6.3 8.8 6.0 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2848 PF11010.3 gi|159040664|ref|YP_001539916.1| - 1.7e-54 184.2 0.1 1.9e-54 184.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2848) Aldedh PF00171.17 gi|159040665|ref|YP_001539917.1| - 1.3e-150 501.7 0.0 1.5e-150 501.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|159040665|ref|YP_001539917.1| - 4.4e-06 25.6 0.0 3.9e-05 22.5 0.0 2.0 1 1 1 2 2 2 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|159040665|ref|YP_001539917.1| - 0.00023 20.4 0.0 0.19 10.8 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF1487) MR_MLE_C PF13378.1 gi|159040666|ref|YP_001539918.1| - 3.2e-25 88.2 0.0 5.8e-25 87.4 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|159040666|ref|YP_001539918.1| - 1.7e-16 60.5 0.0 7.1e-16 58.4 0.1 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|159040666|ref|YP_001539918.1| - 3.2e-11 43.2 0.0 6e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SGL PF08450.7 gi|159040667|ref|YP_001539919.1| - 1.6e-72 243.8 0.1 1.8e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region NHL PF01436.16 gi|159040667|ref|YP_001539919.1| - 0.012 15.5 0.1 0.55 10.2 0.0 2.9 2 0 0 2 2 2 0 NHL repeat Glyoxal_oxid_N PF07250.6 gi|159040667|ref|YP_001539919.1| - 0.027 13.5 0.1 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus Reg_prop PF07494.6 gi|159040667|ref|YP_001539919.1| - 0.11 12.5 0.5 15 6.0 0.2 3.7 3 0 0 3 3 3 0 Two component regulator propeller F420_oxidored PF03807.12 gi|159040668|ref|YP_001539920.1| - 1.2e-13 51.2 0.0 2.1e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|159040668|ref|YP_001539920.1| - 3.7e-05 22.9 0.0 5.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|159040668|ref|YP_001539920.1| - 0.00011 22.0 0.1 0.00043 20.1 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|159040668|ref|YP_001539920.1| - 0.00082 18.7 0.0 0.0013 18.1 0.0 1.4 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|159040668|ref|YP_001539920.1| - 0.003 17.5 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|159040668|ref|YP_001539920.1| - 0.0036 16.7 0.1 0.011 15.1 0.1 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|159040668|ref|YP_001539920.1| - 0.0038 16.9 0.1 0.0061 16.2 0.1 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|159040668|ref|YP_001539920.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|159040668|ref|YP_001539920.1| - 0.046 12.9 0.0 0.065 12.4 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family Bax1-I PF01027.15 gi|159040669|ref|YP_001539921.1| - 0.0075 15.8 5.1 0.0095 15.5 3.5 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF2976 PF11190.3 gi|159040669|ref|YP_001539921.1| - 0.051 13.0 4.4 1.2 8.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF2583 PF10762.4 gi|159040669|ref|YP_001539921.1| - 0.075 13.1 3.8 0.12 12.5 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) Tic20 PF09685.5 gi|159040669|ref|YP_001539921.1| - 0.1 12.5 17.3 0.23 11.4 12.0 1.6 1 1 0 1 1 1 0 Tic20-like protein MARVEL PF01284.18 gi|159040669|ref|YP_001539921.1| - 0.23 11.2 5.3 0.32 10.8 3.7 1.2 1 0 0 1 1 1 0 Membrane-associating domain DUF4534 PF15049.1 gi|159040669|ref|YP_001539921.1| - 0.62 9.6 5.9 0.83 9.2 4.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4534) DUF2754 PF10953.3 gi|159040669|ref|YP_001539921.1| - 5 7.2 16.5 3.7 7.6 0.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2754) ROK PF00480.15 gi|159040670|ref|YP_001539922.1| - 2.8e-25 89.1 0.1 5.2e-25 88.3 0.0 1.5 2 0 0 2 2 2 1 ROK family SIS_2 PF13580.1 gi|159040671|ref|YP_001539923.1| - 2.5e-32 111.4 0.0 3.5e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 SIS domain SIS PF01380.17 gi|159040671|ref|YP_001539923.1| - 1.3e-06 28.0 0.0 3.2e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 SIS domain DUF2529 PF10740.4 gi|159040671|ref|YP_001539923.1| - 0.00077 18.9 0.0 0.47 9.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2529) Glyco_hydro_42 PF02449.10 gi|159040672|ref|YP_001539924.1| - 1.4e-48 165.9 0.0 1.9e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.5 gi|159040672|ref|YP_001539924.1| - 5.7e-16 58.2 0.0 1e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_14 PF01373.12 gi|159040672|ref|YP_001539924.1| - 5.3e-07 28.7 0.4 0.00073 18.3 0.1 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 14 Glyco_hydro_35 PF01301.14 gi|159040672|ref|YP_001539924.1| - 9.8e-06 25.1 0.0 1.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Cellulase PF00150.13 gi|159040672|ref|YP_001539924.1| - 6.2e-05 22.3 0.0 0.00031 20.0 0.0 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) DUF4159 PF13709.1 gi|159040672|ref|YP_001539924.1| - 0.098 11.7 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) UPF0016 PF01169.14 gi|159040673|ref|YP_001539925.1| - 0.56 10.3 10.6 2.4 8.3 1.4 2.7 2 0 0 2 2 2 0 Uncharacterized protein family UPF0016 DUF973 PF06157.6 gi|159040674|ref|YP_001539926.1| - 1.7e-08 33.7 21.0 1.7e-08 33.7 14.6 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF996 PF06195.8 gi|159040674|ref|YP_001539926.1| - 0.0031 17.5 4.3 0.0031 17.5 3.0 4.2 1 1 2 3 3 3 1 Protein of unknown function (DUF996) PBP_like PF12727.2 gi|159040675|ref|YP_001539927.1| - 1.2e-61 207.1 0.0 2.1e-61 206.2 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|159040675|ref|YP_001539927.1| - 1.1e-46 158.1 0.0 1.6e-46 157.5 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|159040675|ref|YP_001539927.1| - 9.1e-27 93.2 0.1 1.5e-26 92.5 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|159040675|ref|YP_001539927.1| - 1.2e-14 53.9 0.0 3.1e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|159040675|ref|YP_001539927.1| - 0.00035 20.2 0.0 0.00061 19.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|159040675|ref|YP_001539927.1| - 0.00056 19.3 0.0 0.00094 18.6 0.0 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.2 gi|159040675|ref|YP_001539927.1| - 0.078 12.3 0.0 0.18 11.1 0.0 1.6 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MFS_1 PF07690.11 gi|159040676|ref|YP_001539928.1| - 6e-40 137.0 71.9 4.4e-26 91.4 29.4 4.0 2 1 2 4 4 4 3 Major Facilitator Superfamily MFS_3 PF05977.8 gi|159040676|ref|YP_001539928.1| - 1.2e-06 26.9 7.8 1.2e-06 26.9 5.4 2.5 2 0 0 2 2 2 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|159040676|ref|YP_001539928.1| - 0.0005 18.7 31.5 0.0007 18.2 11.6 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.15 gi|159040676|ref|YP_001539928.1| - 0.29 9.1 13.7 2.6 5.9 1.8 4.2 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_9 PF13527.1 gi|159040677|ref|YP_001539929.1| - 7.6e-27 93.6 0.0 3.1e-26 91.6 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|159040677|ref|YP_001539929.1| - 8.6e-12 45.0 0.0 1.5e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|159040677|ref|YP_001539929.1| - 2.8e-05 24.0 0.0 5.8e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|159040677|ref|YP_001539929.1| - 0.00068 19.7 0.0 0.0015 18.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159040677|ref|YP_001539929.1| - 0.0067 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Thermopsin PF05317.6 gi|159040678|ref|YP_001539930.1| - 8.6e-64 215.0 13.8 8.6e-64 215.0 9.6 1.9 2 0 0 2 2 2 1 Thermopsin CbiA PF01656.18 gi|159040679|ref|YP_001539931.1| - 9e-07 28.4 0.0 2.7e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|159040679|ref|YP_001539931.1| - 1.3e-06 28.4 0.1 7.8e-06 25.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|159040679|ref|YP_001539931.1| - 0.075 12.1 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 ATPase MipZ DUF4203 PF13886.1 gi|159040680|ref|YP_001539932.1| - 0.024 14.1 1.8 0.027 13.9 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) PIRT PF15099.1 gi|159040680|ref|YP_001539932.1| - 0.025 13.7 0.3 0.038 13.2 0.2 1.3 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF2371 PF10177.4 gi|159040680|ref|YP_001539932.1| - 2.5 7.9 12.6 2.8 7.8 1.3 2.1 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) Radical_SAM PF04055.16 gi|159040681|ref|YP_001539933.1| - 1.8e-19 70.5 0.5 6.8e-18 65.3 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|159040681|ref|YP_001539933.1| - 6.1e-07 29.4 0.1 3.9e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|159040681|ref|YP_001539933.1| - 1.6e-06 28.3 0.1 1.2e-05 25.4 0.0 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Glyco_hydro_15 PF00723.16 gi|159040682|ref|YP_001539934.1| - 3.1e-25 88.6 3.4 3.7e-10 38.9 0.1 3.9 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|159040682|ref|YP_001539934.1| - 3e-10 39.3 0.4 1.2e-09 37.4 0.1 1.8 1 1 1 2 2 2 1 Protein of unknown function, DUF608 Prenyltrans_2 PF13249.1 gi|159040682|ref|YP_001539934.1| - 0.004 17.5 0.7 0.16 12.3 0.1 3.2 2 1 2 4 4 4 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|159040682|ref|YP_001539934.1| - 0.035 14.1 1.0 0.23 11.4 0.3 2.6 2 1 1 3 3 3 0 Prenyltransferase-like OTCace PF00185.19 gi|159040684|ref|YP_001539936.1| - 3.3e-56 189.5 0.0 1.5e-55 187.4 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|159040684|ref|YP_001539936.1| - 8.2e-45 151.9 0.0 1.2e-44 151.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Radical_SAM PF04055.16 gi|159040685|ref|YP_001539937.1| - 2e-12 47.5 0.2 2.8e-11 43.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|159040685|ref|YP_001539937.1| - 2.5e-08 34.1 0.0 5.1e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159040685|ref|YP_001539937.1| - 7.8e-07 29.1 0.0 1.5e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|159040685|ref|YP_001539937.1| - 0.0058 16.9 0.7 0.036 14.3 0.5 2.2 1 1 0 1 1 1 1 Iron-sulfur cluster-binding domain RsmJ PF04378.8 gi|159040685|ref|YP_001539937.1| - 0.11 11.4 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ DEAD PF00270.24 gi|159040687|ref|YP_001539939.1| - 6.5e-31 107.0 0.0 1.2e-28 99.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|159040687|ref|YP_001539939.1| - 4.2e-30 104.8 0.0 1e-29 103.6 0.0 1.7 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.26 gi|159040687|ref|YP_001539939.1| - 4.5e-15 55.2 0.2 2.6e-14 52.8 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|159040687|ref|YP_001539939.1| - 1.9e-05 24.5 0.0 4.5e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|159040687|ref|YP_001539939.1| - 0.0011 17.8 0.0 0.002 16.9 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain SecA_DEAD PF07517.9 gi|159040687|ref|YP_001539939.1| - 0.0054 16.0 0.0 0.02 14.2 0.0 1.7 1 1 0 2 2 2 1 SecA DEAD-like domain AAA_11 PF13086.1 gi|159040687|ref|YP_001539939.1| - 0.015 14.9 0.0 0.096 12.2 0.0 2.3 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|159040687|ref|YP_001539939.1| - 0.023 14.0 0.0 0.088 12.1 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|159040687|ref|YP_001539939.1| - 0.028 14.1 0.2 0.53 10.0 0.1 2.8 2 0 0 2 2 2 0 Part of AAA domain HypA PF01155.14 gi|159040687|ref|YP_001539939.1| - 0.09 12.4 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family UvrD-helicase PF00580.16 gi|159040687|ref|YP_001539939.1| - 0.091 12.0 0.4 0.32 10.2 0.0 2.0 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain DSX_dimer PF08828.5 gi|159040687|ref|YP_001539939.1| - 0.13 11.7 0.2 2.5 7.7 0.0 2.5 2 0 0 2 2 2 0 Doublesex dimerisation domain ATP-cone PF03477.11 gi|159040688|ref|YP_001539940.1| - 4e-08 33.5 1.2 4.8e-08 33.3 0.8 1.2 1 0 0 1 1 1 1 ATP cone domain MHCassoc_trimer PF08831.5 gi|159040688|ref|YP_001539940.1| - 0.13 12.0 0.1 0.15 11.9 0.1 1.4 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain Ribosomal_S10 PF00338.17 gi|159040689|ref|YP_001539941.1| - 6e-28 96.5 0.0 7.3e-28 96.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L11 PF00298.14 gi|159040689|ref|YP_001539941.1| - 0.052 13.7 0.0 0.076 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain Methyltransf_31 PF13847.1 gi|159040690|ref|YP_001539942.1| - 2.1e-15 56.6 0.1 2.7e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159040690|ref|YP_001539942.1| - 1.1e-13 51.7 0.0 2e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159040690|ref|YP_001539942.1| - 1.3e-12 47.7 0.0 2.2e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159040690|ref|YP_001539942.1| - 2.9e-08 33.9 0.0 5.2e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|159040690|ref|YP_001539942.1| - 3.4e-08 33.8 0.0 6.2e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159040690|ref|YP_001539942.1| - 1.1e-06 29.0 0.0 1.8e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159040690|ref|YP_001539942.1| - 3.7e-06 26.2 0.0 5.3e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|159040690|ref|YP_001539942.1| - 3.9e-06 26.8 0.0 6.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|159040690|ref|YP_001539942.1| - 5.4e-06 26.0 0.2 1.1e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|159040690|ref|YP_001539942.1| - 9.2e-06 24.8 0.0 1.9e-05 23.7 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|159040690|ref|YP_001539942.1| - 4e-05 23.2 0.0 6.9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|159040690|ref|YP_001539942.1| - 5.6e-05 22.4 0.0 0.00027 20.1 0.0 2.0 2 0 0 2 2 2 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|159040690|ref|YP_001539942.1| - 0.00025 20.1 0.0 0.00035 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|159040690|ref|YP_001539942.1| - 0.00075 18.6 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|159040690|ref|YP_001539942.1| - 0.0013 18.4 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159040690|ref|YP_001539942.1| - 0.0019 17.6 0.0 0.0037 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain N2227 PF07942.7 gi|159040690|ref|YP_001539942.1| - 0.0043 16.0 0.0 0.045 12.6 0.0 2.1 2 0 0 2 2 2 1 N2227-like protein UPF0146 PF03686.8 gi|159040690|ref|YP_001539942.1| - 0.013 15.3 0.1 0.03 14.1 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Met_10 PF02475.11 gi|159040690|ref|YP_001539942.1| - 0.021 14.4 0.2 0.048 13.2 0.0 1.6 1 1 0 2 2 2 0 Met-10+ like-protein tRNA_U5-meth_tr PF05958.6 gi|159040690|ref|YP_001539942.1| - 0.092 11.4 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|159040690|ref|YP_001539942.1| - 0.093 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 UDPG_MGDP_dh PF00984.14 gi|159040690|ref|YP_001539942.1| - 0.12 12.6 0.0 0.36 11.0 0.0 1.8 2 0 0 2 2 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Asp_protease_2 PF13650.1 gi|159040691|ref|YP_001539943.1| - 2.5e-08 34.2 0.1 4.7e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|159040691|ref|YP_001539943.1| - 1e-05 25.3 0.1 2.1e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|159040691|ref|YP_001539943.1| - 0.00074 19.2 0.0 0.002 17.9 0.0 1.7 2 0 0 2 2 2 1 gag-polyprotein putative aspartyl protease DUF422 PF04240.7 gi|159040694|ref|YP_001539946.1| - 5.9e-25 87.9 20.8 1.9e-24 86.3 14.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF422) Tachykinin PF02202.11 gi|159040694|ref|YP_001539946.1| - 0.21 11.3 1.8 0.39 10.5 0.0 2.3 2 0 0 2 2 2 0 Tachykinin family DUF377 PF04041.8 gi|159040695|ref|YP_001539947.1| - 3.1e-59 200.2 0.0 4.2e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) Glyco_hydro_38 PF01074.17 gi|159040696|ref|YP_001539948.1| - 9.6e-70 234.9 0.0 1.6e-69 234.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|159040696|ref|YP_001539948.1| - 8.5e-51 173.1 0.0 1.1e-50 172.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|159040696|ref|YP_001539948.1| - 2.1e-16 59.8 0.0 3.6e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Alpha mannosidase, middle domain HAD_2 PF13419.1 gi|159040697|ref|YP_001539949.1| - 3e-14 53.6 0.0 5e-14 52.9 0.0 1.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|159040697|ref|YP_001539949.1| - 0.00095 19.3 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MoaC PF01967.16 gi|159040698|ref|YP_001539950.1| - 7e-57 190.8 0.0 7.1e-31 106.6 0.0 2.2 2 0 0 2 2 2 2 MoaC family DUF4168 PF13767.1 gi|159040699|ref|YP_001539951.1| - 0.27 11.8 2.7 5.6 7.6 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4168) Topoisom_bac PF01131.15 gi|159040701|ref|YP_001539953.1| - 1.4e-101 340.2 0.0 1.7e-101 339.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|159040701|ref|YP_001539953.1| - 5.6e-14 51.9 0.0 3.8e-13 49.2 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.1 gi|159040701|ref|YP_001539953.1| - 0.00044 20.2 0.0 0.0012 18.8 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Claudin_2 PF13903.1 gi|159040702|ref|YP_001539954.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction IncA PF04156.9 gi|159040702|ref|YP_001539954.1| - 0.018 14.6 5.0 0.029 13.9 3.5 1.2 1 0 0 1 1 1 0 IncA protein VirB3 PF05101.8 gi|159040702|ref|YP_001539954.1| - 0.038 13.9 0.8 0.059 13.3 0.6 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein HTH_5 PF01022.15 gi|159040703|ref|YP_001539955.1| - 1.1e-11 44.1 0.0 2.1e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|159040703|ref|YP_001539955.1| - 3.5e-09 36.3 0.0 6.6e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|159040703|ref|YP_001539955.1| - 2.7e-06 26.9 0.1 0.00095 18.8 0.0 2.6 1 1 1 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|159040703|ref|YP_001539955.1| - 6e-06 25.8 0.1 1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|159040703|ref|YP_001539955.1| - 1e-05 24.9 0.1 3.5e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|159040703|ref|YP_001539955.1| - 0.0001 21.5 0.0 0.00021 20.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|159040703|ref|YP_001539955.1| - 0.0033 17.0 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|159040703|ref|YP_001539955.1| - 0.0084 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|159040703|ref|YP_001539955.1| - 0.015 15.4 0.5 0.34 11.0 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|159040703|ref|YP_001539955.1| - 0.067 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|159040703|ref|YP_001539955.1| - 0.097 13.0 0.1 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_19 PF12844.2 gi|159040704|ref|YP_001539956.1| - 7.2e-10 38.7 0.3 1.2e-09 38.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|159040704|ref|YP_001539956.1| - 1.7e-09 37.3 0.2 3.4e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|159040704|ref|YP_001539956.1| - 3e-07 30.5 0.0 5.8e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|159040704|ref|YP_001539956.1| - 0.00014 21.4 0.0 0.0003 20.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|159040704|ref|YP_001539956.1| - 0.00023 21.2 0.7 0.00048 20.2 0.5 1.6 1 0 0 1 1 1 1 Archaeal TRASH domain DUF134 PF02001.11 gi|159040704|ref|YP_001539956.1| - 0.035 14.0 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 CENP-B_N PF04218.8 gi|159040704|ref|YP_001539956.1| - 0.06 12.7 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain DUF4428 PF14471.1 gi|159040704|ref|YP_001539956.1| - 0.11 12.2 0.8 0.44 10.3 0.3 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) Sgf11 PF08209.6 gi|159040704|ref|YP_001539956.1| - 0.3 10.4 0.2 0.3 10.4 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Peptidase_M20 PF01546.23 gi|159040705|ref|YP_001539957.1| - 7.6e-27 94.0 0.0 9.7e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|159040705|ref|YP_001539957.1| - 1.1e-17 63.8 0.0 1.7e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|159040705|ref|YP_001539957.1| - 0.00015 20.6 0.0 0.11 11.2 0.0 2.6 3 0 0 3 3 3 2 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|159040705|ref|YP_001539957.1| - 0.036 13.8 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M28 Creatininase PF02633.9 gi|159040706|ref|YP_001539958.1| - 6.3e-64 215.3 0.0 7e-64 215.1 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Beta-lactamase PF00144.19 gi|159040707|ref|YP_001539959.1| - 4.1e-65 219.9 0.0 5.4e-65 219.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|159040707|ref|YP_001539959.1| - 2.6e-37 126.7 0.8 6.1e-37 125.6 0.6 1.7 1 0 0 1 1 1 1 Pab87 octamerisation domain Phage_FRD3 PF05798.6 gi|159040707|ref|YP_001539959.1| - 0.027 14.7 0.2 0.065 13.5 0.1 1.7 1 0 0 1 1 1 0 Bacteriophage FRD3 protein HSBP1 PF06825.7 gi|159040710|ref|YP_001539962.1| - 3.4e-05 23.3 8.9 0.017 14.6 2.4 3.2 1 1 1 2 2 2 2 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.7 gi|159040710|ref|YP_001539962.1| - 9.5e-05 22.2 1.4 0.00013 21.7 0.2 1.7 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|159040710|ref|YP_001539962.1| - 0.0022 17.8 1.7 0.0031 17.3 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) CorA PF01544.13 gi|159040710|ref|YP_001539962.1| - 0.0055 15.7 1.5 0.0065 15.5 1.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MtrG PF04210.8 gi|159040710|ref|YP_001539962.1| - 0.0082 15.7 3.7 5.3 6.7 1.4 3.4 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G UPF0184 PF03670.8 gi|159040710|ref|YP_001539962.1| - 0.0088 16.1 4.0 0.041 14.0 0.3 2.6 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0184) NPV_P10 PF05531.7 gi|159040710|ref|YP_001539962.1| - 0.0094 16.1 0.8 0.17 12.1 0.6 2.2 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|159040710|ref|YP_001539962.1| - 0.01 15.4 0.0 0.015 14.9 0.0 1.3 1 1 0 1 1 1 0 IncA protein Matrilin_ccoil PF10393.4 gi|159040710|ref|YP_001539962.1| - 0.014 14.7 0.2 0.16 11.3 0.0 2.4 2 1 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin MRF_C1 PF13887.1 gi|159040710|ref|YP_001539962.1| - 0.016 14.1 4.7 3.3 6.8 0.3 3.5 3 1 0 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 F_actin_bind PF08919.5 gi|159040710|ref|YP_001539962.1| - 0.016 14.8 0.1 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 F-actin binding TelA PF05816.6 gi|159040710|ref|YP_001539962.1| - 0.024 13.3 0.2 0.03 13.0 0.1 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) DUF3921 PF13060.1 gi|159040710|ref|YP_001539962.1| - 0.03 14.2 0.5 6.6 6.6 0.0 2.5 1 1 2 3 3 2 0 Protein of unknown function (DUF3921) Hemagglutinin PF00509.13 gi|159040710|ref|YP_001539962.1| - 0.031 12.4 0.9 0.042 11.9 0.6 1.2 1 0 0 1 1 1 0 Haemagglutinin GvpK PF05121.7 gi|159040710|ref|YP_001539962.1| - 0.035 13.9 0.5 0.11 12.3 0.2 1.9 1 1 1 2 2 2 0 Gas vesicle protein K Mnd1 PF03962.10 gi|159040710|ref|YP_001539962.1| - 0.041 13.5 0.1 0.052 13.2 0.1 1.2 1 0 0 1 1 1 0 Mnd1 family PMT_C PF11647.3 gi|159040710|ref|YP_001539962.1| - 0.052 13.1 2.2 0.11 12.1 0.1 2.4 3 0 0 3 3 3 0 C-terminal region of Pasteurella multocida toxin residues 569-1285 FliD_C PF07195.7 gi|159040710|ref|YP_001539962.1| - 0.058 12.6 0.1 0.18 11.0 0.0 1.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Prefoldin_3 PF13758.1 gi|159040710|ref|YP_001539962.1| - 0.059 13.1 0.3 2.7 7.8 0.1 2.9 2 1 1 3 3 3 0 Prefoldin subunit Atg14 PF10186.4 gi|159040710|ref|YP_001539962.1| - 0.061 12.2 0.1 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 YvrJ PF12841.2 gi|159040710|ref|YP_001539962.1| - 0.063 12.5 1.3 0.91 8.8 0.2 2.8 1 1 2 3 3 3 0 YvrJ protein family COG5 PF10392.4 gi|159040710|ref|YP_001539962.1| - 0.064 13.2 0.4 0.13 12.1 0.3 1.5 1 0 0 1 1 1 0 Golgi transport complex subunit 5 AKNA PF12443.3 gi|159040710|ref|YP_001539962.1| - 0.071 13.1 0.1 0.51 10.3 0.0 2.1 1 1 1 2 2 2 0 AT-hook-containing transcription factor TSC22 PF01166.13 gi|159040710|ref|YP_001539962.1| - 0.089 12.7 0.2 0.43 10.5 0.0 2.1 2 1 0 2 2 2 0 TSC-22/dip/bun family HalX PF08663.5 gi|159040710|ref|YP_001539962.1| - 0.1 12.6 2.0 0.96 9.4 0.3 2.4 1 1 1 2 2 2 0 HalX domain ACCA PF03255.9 gi|159040710|ref|YP_001539962.1| - 0.11 12.0 0.2 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MbeD_MobD PF04899.7 gi|159040710|ref|YP_001539962.1| - 0.12 12.2 0.0 0.78 9.6 0.0 2.2 1 1 1 2 2 2 0 MbeD/MobD like CagA PF03507.8 gi|159040710|ref|YP_001539962.1| - 0.15 11.8 0.4 0.47 10.2 0.3 1.6 1 1 1 2 2 2 0 CagA exotoxin Syntaxin PF00804.20 gi|159040710|ref|YP_001539962.1| - 0.18 12.0 0.8 0.36 11.0 0.6 1.6 1 1 0 1 1 1 0 Syntaxin Osmo_CC PF08946.5 gi|159040710|ref|YP_001539962.1| - 0.24 11.4 2.1 2.4 8.2 0.1 2.3 1 1 1 2 2 2 0 Osmosensory transporter coiled coil Erythro-docking PF09277.6 gi|159040710|ref|YP_001539962.1| - 4.1 7.1 5.3 18 5.1 1.6 3.0 2 1 0 2 2 2 0 Erythronolide synthase, docking Potass_KdpF PF09604.5 gi|159040711|ref|YP_001539963.1| - 0.067 13.0 2.0 0.067 13.0 1.4 3.8 4 0 0 4 4 4 0 F subunit of K+-transporting ATPase (Potass_KdpF) NTPase_I-T PF01931.13 gi|159040712|ref|YP_001539964.1| - 1.2e-36 125.9 0.0 1.4e-36 125.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Tail_P2_I PF09684.5 gi|159040714|ref|YP_001539966.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) Dec-1 PF04624.9 gi|159040715|ref|YP_001539967.1| - 0.39 10.3 2.0 0.86 9.2 1.4 1.5 1 0 0 1 1 1 0 Dec-1 repeat Aminotran_1_2 PF00155.16 gi|159040716|ref|YP_001539968.1| - 1.9e-49 168.5 0.0 2.2e-49 168.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|159040716|ref|YP_001539968.1| - 7.6e-07 28.4 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|159040716|ref|YP_001539968.1| - 0.0037 15.6 0.0 0.0053 15.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme PALP PF00291.20 gi|159040717|ref|YP_001539969.1| - 1.9e-68 230.9 0.0 2.4e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|159040717|ref|YP_001539969.1| - 0.045 12.7 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AA_permease_2 PF13520.1 gi|159040718|ref|YP_001539970.1| - 4.1e-40 137.6 55.0 4.1e-40 137.6 38.2 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|159040718|ref|YP_001539970.1| - 1e-23 83.4 61.9 1e-23 83.4 42.9 2.4 1 1 1 2 2 2 1 Amino acid permease IGPS PF00218.16 gi|159040719|ref|YP_001539971.1| - 9.1e-53 178.9 0.0 1.1e-52 178.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|159040719|ref|YP_001539971.1| - 0.00042 19.6 0.2 0.00082 18.7 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|159040719|ref|YP_001539971.1| - 0.0039 16.1 0.0 0.0057 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|159040719|ref|YP_001539971.1| - 0.051 12.4 0.0 0.07 11.9 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) PIRT PF15099.1 gi|159040721|ref|YP_001539973.1| - 1.2 8.3 6.1 0.69 9.1 1.7 2.1 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family Ribosomal_S6e PF01092.14 gi|159040722|ref|YP_001539974.1| - 1.6e-25 89.1 0.1 1.9e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e RNA_pol_Rpc34 PF05158.7 gi|159040723|ref|YP_001539975.1| - 2.3e-05 23.7 0.0 4.5e-05 22.7 0.0 1.5 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit TrmB PF01978.14 gi|159040723|ref|YP_001539975.1| - 0.0086 15.7 0.2 0.015 14.9 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|159040723|ref|YP_001539975.1| - 0.022 14.5 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR PF01047.17 gi|159040723|ref|YP_001539975.1| - 0.025 14.3 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|159040723|ref|YP_001539975.1| - 0.043 14.1 0.0 0.058 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_1g PF09334.6 gi|159040724|ref|YP_001539976.1| - 1.2e-141 471.9 0.0 1.4e-141 471.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|159040724|ref|YP_001539976.1| - 1.8e-13 49.4 0.0 3.6e-06 25.2 0.0 4.3 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|159040724|ref|YP_001539976.1| - 7.4e-09 35.5 0.1 1.6e-08 34.4 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|159040724|ref|YP_001539976.1| - 2.3e-06 26.9 0.0 2.9e-05 23.3 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain zf-ribbon_3 PF13248.1 gi|159040724|ref|YP_001539976.1| - 0.023 13.9 6.9 0.78 9.0 3.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|159040724|ref|YP_001539976.1| - 0.19 11.5 4.5 0.46 10.3 3.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|159040724|ref|YP_001539976.1| - 0.41 10.0 6.3 0.34 10.2 1.6 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|159040724|ref|YP_001539976.1| - 1.5 8.3 9.3 1.7 8.2 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain PQQ_2 PF13360.1 gi|159040725|ref|YP_001539977.1| - 5.9e-31 107.7 5.3 3.3e-21 75.8 0.4 3.0 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|159040725|ref|YP_001539977.1| - 4.8e-24 82.6 11.8 6.3e-06 25.4 0.0 6.6 6 0 0 6 6 6 6 PQQ enzyme repeat PQQ_3 PF13570.1 gi|159040725|ref|YP_001539977.1| - 3.3e-12 46.2 15.8 0.007 16.6 0.1 7.6 7 2 1 8 8 8 5 PQQ-like domain HTH_5 PF01022.15 gi|159040726|ref|YP_001539978.1| - 8e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|159040726|ref|YP_001539978.1| - 0.00012 21.7 0.0 0.00029 20.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|159040726|ref|YP_001539978.1| - 0.0011 18.4 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|159040726|ref|YP_001539978.1| - 0.0033 17.2 0.1 0.026 14.3 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain Phage_X PF05155.10 gi|159040726|ref|YP_001539978.1| - 0.049 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Phage X family MMR_HSR1 PF01926.18 gi|159040727|ref|YP_001539979.1| - 9.9e-15 54.5 0.2 2.8e-14 53.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|159040727|ref|YP_001539979.1| - 1.5e-12 47.4 0.0 3.6e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|159040727|ref|YP_001539979.1| - 2.8e-06 26.6 0.1 8.8e-06 25.0 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|159040727|ref|YP_001539979.1| - 5.3e-05 22.7 0.1 0.019 14.4 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain PduV-EutP PF10662.4 gi|159040727|ref|YP_001539979.1| - 0.0041 16.6 1.0 0.15 11.5 0.7 2.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|159040727|ref|YP_001539979.1| - 0.016 14.4 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ABC_tran PF00005.22 gi|159040727|ref|YP_001539979.1| - 0.08 13.2 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|159040727|ref|YP_001539979.1| - 0.099 13.1 0.0 0.31 11.5 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|159040727|ref|YP_001539979.1| - 0.31 10.4 2.3 7.6 5.9 0.1 2.4 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Pcc1 PF09341.5 gi|159040728|ref|YP_001539980.1| - 5.9e-05 23.0 0.0 6.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF226 PF02890.9 gi|159040728|ref|YP_001539980.1| - 0.015 15.0 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 Borrelia family of unknown function DUF226 PhnA PF03831.9 gi|159040728|ref|YP_001539980.1| - 0.099 12.0 0.0 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 PhnA protein Reo_sigmaC PF04582.7 gi|159040729|ref|YP_001539981.1| - 2.2e-07 30.3 6.6 0.0013 18.0 1.1 3.2 1 1 3 4 4 4 3 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|159040729|ref|YP_001539981.1| - 9.2e-07 28.8 49.3 0.0028 17.5 9.3 4.3 1 1 3 4 4 4 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|159040729|ref|YP_001539981.1| - 1.2e-06 28.4 17.7 0.00019 21.2 4.5 3.5 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|159040729|ref|YP_001539981.1| - 2e-05 24.2 41.7 0.0035 16.9 6.5 3.6 1 1 2 3 3 3 2 IncA protein CALCOCO1 PF07888.6 gi|159040729|ref|YP_001539981.1| - 0.00011 20.7 38.5 0.0075 14.6 11.4 2.2 1 1 1 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like DUF4201 PF13870.1 gi|159040729|ref|YP_001539981.1| - 0.00018 21.0 48.5 0.012 15.0 14.9 4.0 2 2 2 4 4 4 2 Domain of unknown function (DUF4201) Spc7 PF08317.6 gi|159040729|ref|YP_001539981.1| - 0.00019 20.1 40.0 0.018 13.7 11.8 2.7 1 1 2 3 3 3 2 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|159040729|ref|YP_001539981.1| - 0.00023 21.1 48.8 0.00059 19.8 6.3 4.8 2 1 2 5 5 4 2 Seryl-tRNA synthetase N-terminal domain WXG100 PF06013.7 gi|159040729|ref|YP_001539981.1| - 0.00031 20.6 1.9 25 4.9 0.0 5.0 4 1 1 5 5 5 0 Proteins of 100 residues with WXG DUF948 PF06103.6 gi|159040729|ref|YP_001539981.1| - 0.00033 20.4 20.4 0.04 13.7 1.5 4.5 2 2 2 4 4 4 1 Bacterial protein of unknown function (DUF948) Myosin_tail_1 PF01576.14 gi|159040729|ref|YP_001539981.1| - 0.00038 18.3 51.1 0.0031 15.3 13.8 2.8 1 1 0 2 2 2 1 Myosin tail AAA_13 PF13166.1 gi|159040729|ref|YP_001539981.1| - 0.00051 18.6 37.4 0.026 12.9 10.9 2.2 1 1 1 2 2 2 2 AAA domain Laminin_II PF06009.7 gi|159040729|ref|YP_001539981.1| - 0.00082 19.1 31.9 0.03 14.0 8.2 3.4 2 1 1 3 3 3 2 Laminin Domain II MCPsignal PF00015.16 gi|159040729|ref|YP_001539981.1| - 0.0013 18.3 7.4 0.097 12.1 0.5 2.6 2 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Phlebovirus_NSM PF07246.6 gi|159040729|ref|YP_001539981.1| - 0.0018 17.5 5.6 0.0018 17.5 3.9 3.3 1 1 2 3 3 2 1 Phlebovirus nonstructural protein NS-M TPR_MLP1_2 PF07926.7 gi|159040729|ref|YP_001539981.1| - 0.002 17.8 46.9 0.0037 17.0 6.1 4.8 1 1 2 3 3 3 1 TPR/MLP1/MLP2-like protein Flagellar_rod PF05149.7 gi|159040729|ref|YP_001539981.1| - 0.0027 16.9 4.0 0.0027 16.9 2.8 4.1 1 1 2 4 4 4 1 Paraflagellar rod protein SlyX PF04102.7 gi|159040729|ref|YP_001539981.1| - 0.0033 17.7 23.9 0.2 12.0 0.9 5.6 2 2 2 4 4 4 2 SlyX FlxA PF14282.1 gi|159040729|ref|YP_001539981.1| - 0.0037 17.1 19.6 0.51 10.3 2.4 4.6 2 2 2 5 5 4 2 FlxA-like protein DUF972 PF06156.8 gi|159040729|ref|YP_001539981.1| - 0.0073 16.6 41.2 0.56 10.5 2.1 4.8 2 2 2 4 4 4 2 Protein of unknown function (DUF972) YlqD PF11068.3 gi|159040729|ref|YP_001539981.1| - 0.016 15.2 30.8 0.32 11.0 2.9 4.1 2 2 2 4 4 4 0 YlqD protein Cortex-I_coil PF09304.5 gi|159040729|ref|YP_001539981.1| - 0.017 15.1 50.4 0.022 14.7 5.4 5.1 1 1 5 6 6 6 0 Cortexillin I, coiled coil Syntaxin PF00804.20 gi|159040729|ref|YP_001539981.1| - 0.018 15.2 37.8 0.084 13.0 9.4 4.4 1 1 1 2 2 1 0 Syntaxin WEMBL PF05701.6 gi|159040729|ref|YP_001539981.1| - 0.02 13.3 44.5 2.4 6.5 30.6 2.8 1 1 0 1 1 1 0 Weak chloroplast movement under blue light APG6 PF04111.7 gi|159040729|ref|YP_001539981.1| - 0.021 13.8 46.0 0.037 13.0 5.8 3.9 1 1 2 4 4 4 0 Autophagy protein Apg6 MutS_III PF05192.13 gi|159040729|ref|YP_001539981.1| - 0.034 13.9 14.8 0.014 15.1 6.9 2.3 1 1 1 2 2 2 0 MutS domain III NPV_P10 PF05531.7 gi|159040729|ref|YP_001539981.1| - 0.035 14.3 19.0 1.6 9.0 3.5 4.9 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.3 gi|159040729|ref|YP_001539981.1| - 0.035 11.4 36.1 0.22 8.7 24.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) TBPIP PF07106.8 gi|159040729|ref|YP_001539981.1| - 0.043 13.3 44.6 0.6 9.6 3.4 4.3 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Snapin_Pallidin PF14712.1 gi|159040729|ref|YP_001539981.1| - 0.049 13.9 31.5 0.36 11.1 1.2 4.6 2 2 2 4 4 4 0 Snapin/Pallidin BLOC1_2 PF10046.4 gi|159040729|ref|YP_001539981.1| - 0.055 13.6 30.7 0.18 11.9 1.9 4.8 1 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CCDC155 PF14662.1 gi|159040729|ref|YP_001539981.1| - 0.064 12.8 40.3 0.067 12.7 12.4 3.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 COG2 PF06148.6 gi|159040729|ref|YP_001539981.1| - 0.07 13.0 27.0 1.2 8.9 5.6 3.9 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2421 PF10334.4 gi|159040729|ref|YP_001539981.1| - 0.081 12.5 5.4 4.2 6.9 0.1 3.8 1 1 2 4 4 4 0 Protein of unknown function (DUF2421) DUF3086 PF11285.3 gi|159040729|ref|YP_001539981.1| - 0.087 11.6 0.1 0.087 11.6 0.1 3.9 2 2 1 3 3 3 0 Protein of unknown function (DUF3086) SRP1_TIP1 PF00660.12 gi|159040729|ref|YP_001539981.1| - 0.14 12.0 0.5 6.7 6.5 0.1 2.6 1 1 1 2 2 2 0 Seripauperin and TIP1 family Mod_r PF07200.8 gi|159040729|ref|YP_001539981.1| - 0.14 12.0 43.2 0.23 11.3 3.3 4.2 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein MtrB PF05440.7 gi|159040729|ref|YP_001539981.1| - 0.14 12.1 4.2 2 8.4 0.1 4.0 2 2 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B Syntaxin_2 PF14523.1 gi|159040729|ref|YP_001539981.1| - 0.16 11.9 36.2 0.47 10.5 1.2 5.0 1 1 3 4 4 4 0 Syntaxin-like protein Bacillus_HBL PF05791.6 gi|159040729|ref|YP_001539981.1| - 0.16 11.2 26.8 0.02 14.2 5.1 3.9 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Fib_alpha PF08702.5 gi|159040729|ref|YP_001539981.1| - 0.21 11.7 31.2 0.21 11.6 2.8 3.4 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family APG17 PF04108.7 gi|159040729|ref|YP_001539981.1| - 0.23 10.2 25.2 0.75 8.5 17.4 2.1 1 1 0 1 1 1 0 Autophagy protein Apg17 PspA_IM30 PF04012.7 gi|159040729|ref|YP_001539981.1| - 0.25 10.6 39.1 0.076 12.3 1.8 5.2 1 1 3 4 4 4 0 PspA/IM30 family IFT57 PF10498.4 gi|159040729|ref|YP_001539981.1| - 0.36 9.5 30.2 0.92 8.1 5.6 3.1 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 M_domain PF12938.2 gi|159040729|ref|YP_001539981.1| - 0.43 10.3 4.4 2 8.1 0.5 2.4 2 0 0 2 2 2 0 M domain of GW182 Arena_glycoprot PF00798.13 gi|159040729|ref|YP_001539981.1| - 0.43 8.9 3.0 0.77 8.0 1.8 1.6 1 1 0 1 1 1 0 Arenavirus glycoprotein Mnd1 PF03962.10 gi|159040729|ref|YP_001539981.1| - 0.46 10.1 43.0 0.26 10.9 2.0 4.6 1 1 3 4 4 4 0 Mnd1 family RmuC PF02646.11 gi|159040729|ref|YP_001539981.1| - 0.62 8.8 25.2 0.64 8.7 1.2 4.1 2 2 2 4 4 4 0 RmuC family AKNA PF12443.3 gi|159040729|ref|YP_001539981.1| - 0.74 9.8 20.7 0.4 10.7 0.3 5.2 1 1 3 4 4 4 0 AT-hook-containing transcription factor DivIC PF04977.10 gi|159040729|ref|YP_001539981.1| - 0.76 9.3 41.7 0.11 12.0 0.9 6.3 2 2 4 6 6 6 0 Septum formation initiator Syntaxin-6_N PF09177.6 gi|159040729|ref|YP_001539981.1| - 0.81 10.1 25.6 2.4 8.6 1.6 4.9 1 1 3 4 4 4 0 Syntaxin 6, N-terminal Nup54 PF13874.1 gi|159040729|ref|YP_001539981.1| - 0.82 9.3 36.5 1.4 8.6 1.0 4.5 1 1 1 4 4 4 0 Nucleoporin complex subunit 54 DUF2203 PF09969.4 gi|159040729|ref|YP_001539981.1| - 1.3 9.2 26.4 0.74 10.0 1.9 4.5 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2203) Filament PF00038.16 gi|159040729|ref|YP_001539981.1| - 1.4 8.3 43.4 0.58 9.5 26.2 2.6 1 1 1 2 2 2 0 Intermediate filament protein GAS PF13851.1 gi|159040729|ref|YP_001539981.1| - 1.4 8.0 47.0 0.71 9.0 8.3 4.5 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding ERM PF00769.14 gi|159040729|ref|YP_001539981.1| - 1.4 8.3 42.8 6.2 6.2 10.3 3.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Spectrin PF00435.16 gi|159040729|ref|YP_001539981.1| - 1.5 9.1 27.3 1.6 9.0 7.0 4.1 1 1 1 3 3 3 0 Spectrin repeat LemA PF04011.7 gi|159040729|ref|YP_001539981.1| - 1.8 7.6 19.5 0.38 9.8 0.5 3.2 1 1 2 3 3 3 0 LemA family DUF4200 PF13863.1 gi|159040729|ref|YP_001539981.1| - 1.8 8.4 55.4 0.23 11.4 7.5 4.7 1 1 4 5 5 5 0 Domain of unknown function (DUF4200) Phage_GP20 PF06810.6 gi|159040729|ref|YP_001539981.1| - 1.9 7.9 44.0 4.1 6.8 3.9 4.9 1 1 3 5 5 5 0 Phage minor structural protein GP20 Lectin_N PF03954.9 gi|159040729|ref|YP_001539981.1| - 1.9 7.9 8.0 2.2 7.6 0.2 3.4 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain Atg14 PF10186.4 gi|159040729|ref|YP_001539981.1| - 2 7.2 48.1 0.33 9.8 4.1 4.2 1 1 3 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Prominin PF05478.6 gi|159040729|ref|YP_001539981.1| - 2.3 5.6 16.7 2.3 5.6 2.2 2.5 1 1 1 2 2 2 0 Prominin DUF1664 PF07889.7 gi|159040729|ref|YP_001539981.1| - 2.3 8.0 25.1 5.1 6.9 2.4 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Flagellin_C PF00700.16 gi|159040729|ref|YP_001539981.1| - 2.5 8.3 6.5 2.7 8.1 0.8 3.3 2 1 2 4 4 3 0 Bacterial flagellin C-terminal helical region Lipoprotein_3 PF00938.12 gi|159040729|ref|YP_001539981.1| - 2.5 7.9 12.5 1.6 8.5 0.1 3.3 3 0 0 3 3 2 0 Lipoprotein DOG1 PF14144.1 gi|159040729|ref|YP_001539981.1| - 2.6 8.1 10.9 5.7 7.0 0.1 4.0 4 1 0 4 4 3 0 Seed dormancy control Sec34 PF04136.10 gi|159040729|ref|YP_001539981.1| - 2.6 7.7 17.0 1 9.0 3.1 3.2 1 1 2 3 3 3 0 Sec34-like family Fzo_mitofusin PF04799.8 gi|159040729|ref|YP_001539981.1| - 2.6 7.3 22.5 1.4 8.2 3.1 4.2 1 1 3 4 4 4 0 fzo-like conserved region Tektin PF03148.9 gi|159040729|ref|YP_001539981.1| - 2.8 6.3 38.4 0.59 8.6 1.6 4.1 1 1 2 4 4 4 0 Tektin family DUF342 PF03961.8 gi|159040729|ref|YP_001539981.1| - 3.6 5.8 42.3 1.2 7.5 5.9 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF342) CAP59_mtransfer PF11735.3 gi|159040729|ref|YP_001539981.1| - 4.8 6.3 12.7 0.42 9.7 3.1 2.5 2 1 1 3 3 3 0 Cryptococcal mannosyltransferase 1 Osmo_CC PF08946.5 gi|159040729|ref|YP_001539981.1| - 5.7 7.0 30.4 6.6 6.8 0.3 6.8 3 3 4 7 7 7 0 Osmosensory transporter coiled coil Transposase_22 PF02994.9 gi|159040729|ref|YP_001539981.1| - 6.8 5.0 46.1 1.9 6.9 14.3 3.6 1 1 3 4 4 4 0 L1 transposable element FliD_N PF02465.13 gi|159040729|ref|YP_001539981.1| - 8.3 6.8 12.0 5 7.5 2.1 4.1 2 2 2 4 4 4 0 Flagellar hook-associated protein 2 N-terminus Aldo_ket_red PF00248.16 gi|159040730|ref|YP_001539982.1| - 1.6e-61 207.6 0.0 1.8e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Aldo_ket_red PF00248.16 gi|159040731|ref|YP_001539983.1| - 8.3e-74 247.9 0.0 9.4e-74 247.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DNA_pol_B PF00136.16 gi|159040732|ref|YP_001539984.1| - 1.4e-84 284.6 0.0 1.9e-84 284.1 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|159040732|ref|YP_001539984.1| - 1e-30 106.7 0.0 1.8e-30 105.9 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|159040732|ref|YP_001539984.1| - 1e-05 25.4 0.0 2.3e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|159040732|ref|YP_001539984.1| - 2e-05 24.2 0.1 3.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB BPD_transp_1 PF00528.17 gi|159040733|ref|YP_001539985.1| - 4.7e-32 111.0 18.4 4.7e-32 111.0 12.7 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmB PF01978.14 gi|159040734|ref|YP_001539986.1| - 1.3e-10 40.8 0.1 2.4e-10 39.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|159040734|ref|YP_001539986.1| - 1.3e-06 27.9 0.0 3.3e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_9 PF08221.6 gi|159040734|ref|YP_001539986.1| - 2.8e-06 27.1 0.5 1.8e-05 24.4 0.1 2.2 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.2 gi|159040734|ref|YP_001539986.1| - 3.4e-05 23.4 0.1 6.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|159040734|ref|YP_001539986.1| - 0.00048 19.5 0.2 0.0015 17.8 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|159040734|ref|YP_001539986.1| - 0.00067 19.2 0.0 0.0015 18.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|159040734|ref|YP_001539986.1| - 0.0008 19.0 0.2 0.002 17.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|159040734|ref|YP_001539986.1| - 0.00092 18.8 0.8 0.0031 17.1 0.3 2.1 1 1 1 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|159040734|ref|YP_001539986.1| - 0.0027 17.8 0.2 0.007 16.4 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator RuvB_C PF05491.8 gi|159040734|ref|YP_001539986.1| - 0.0029 17.1 0.1 0.012 15.1 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus HTH_24 PF13412.1 gi|159040734|ref|YP_001539986.1| - 0.0031 16.8 0.2 0.0072 15.6 0.2 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|159040734|ref|YP_001539986.1| - 0.0035 17.0 0.0 0.0069 16.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|159040734|ref|YP_001539986.1| - 0.0039 17.0 0.7 0.0093 15.8 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|159040734|ref|YP_001539986.1| - 0.0054 16.8 0.5 0.015 15.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|159040734|ref|YP_001539986.1| - 0.0082 15.9 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|159040734|ref|YP_001539986.1| - 0.009 15.4 0.6 0.04 13.3 0.1 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding B-block_TFIIIC PF04182.7 gi|159040734|ref|YP_001539986.1| - 0.011 15.5 0.1 0.017 14.9 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Penicillinase_R PF03965.11 gi|159040734|ref|YP_001539986.1| - 0.013 15.5 0.1 0.022 14.8 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor PCI PF01399.22 gi|159040734|ref|YP_001539986.1| - 0.021 15.1 0.9 0.036 14.3 0.1 1.8 2 0 0 2 2 2 0 PCI domain HTH_27 PF13463.1 gi|159040734|ref|YP_001539986.1| - 0.039 14.2 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|159040734|ref|YP_001539986.1| - 0.044 13.3 0.0 0.37 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4393 PF14337.1 gi|159040734|ref|YP_001539986.1| - 0.075 12.4 0.1 0.12 11.8 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) Dimerisation PF08100.6 gi|159040734|ref|YP_001539986.1| - 0.079 12.7 0.1 0.22 11.4 0.0 1.9 1 1 0 1 1 1 0 Dimerisation domain DUF4423 PF14394.1 gi|159040734|ref|YP_001539986.1| - 0.092 12.2 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FIVAR PF07554.8 gi|159040734|ref|YP_001539986.1| - 0.13 12.5 0.4 21 5.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised Sugar-binding Domain Sigma70_r4_2 PF08281.7 gi|159040734|ref|YP_001539986.1| - 0.34 10.4 1.9 3.3 7.2 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 Dzip-like_N PF13815.1 gi|159040734|ref|YP_001539986.1| - 0.71 9.6 4.5 0.85 9.4 0.6 2.6 2 1 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal PfkB PF00294.19 gi|159040735|ref|YP_001539987.1| - 6.2e-44 150.3 0.3 7.6e-44 150.0 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Pyr_redox PF00070.22 gi|159040735|ref|YP_001539987.1| - 0.0051 17.2 0.3 0.013 15.9 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase MFS_1 PF07690.11 gi|159040736|ref|YP_001539988.1| - 2.1e-28 99.0 49.0 2.2e-23 82.5 20.1 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|159040736|ref|YP_001539988.1| - 0.0017 16.8 31.9 0.07 11.5 5.8 3.1 1 1 1 3 3 3 3 MFS/sugar transport protein SNF PF00209.13 gi|159040737|ref|YP_001539989.1| - 0.085 11.3 0.0 0.089 11.2 0.0 1.0 1 0 0 1 1 1 0 Sodium:neurotransmitter symporter family VRP1 PF03538.9 gi|159040737|ref|YP_001539989.1| - 0.14 11.1 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Salmonella virulence plasmid 28.1kDa A protein MarR_2 PF12802.2 gi|159040738|ref|YP_001539990.1| - 0.0016 18.0 0.0 1.1 8.9 0.0 3.5 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.1 gi|159040738|ref|YP_001539990.1| - 0.0041 16.4 0.0 0.21 11.0 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|159040738|ref|YP_001539990.1| - 0.0083 15.8 0.3 7.7 6.3 0.0 3.4 4 0 0 4 4 4 2 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|159040738|ref|YP_001539990.1| - 0.0084 15.6 0.1 0.046 13.2 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RimK PF08443.6 gi|159040739|ref|YP_001539991.1| - 5.2e-40 136.9 0.0 7.4e-40 136.4 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|159040739|ref|YP_001539991.1| - 3.3e-15 55.6 0.0 4.7e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159040739|ref|YP_001539991.1| - 2e-10 40.7 0.0 3e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159040739|ref|YP_001539991.1| - 8.6e-08 32.2 0.1 1.4e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|159040739|ref|YP_001539991.1| - 3.3e-05 22.7 0.0 4.7e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Synapsin_C PF02750.9 gi|159040739|ref|YP_001539991.1| - 0.0067 15.5 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Synapsin, ATP binding domain ATPgrasp_YheCD PF14398.1 gi|159040739|ref|YP_001539991.1| - 0.0076 15.0 0.0 0.76 8.5 0.0 2.2 1 1 0 2 2 2 2 YheC/D like ATP-grasp TrmB PF01978.14 gi|159040740|ref|YP_001539992.1| - 1e-18 66.7 0.1 2.4e-18 65.6 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|159040740|ref|YP_001539992.1| - 0.00025 20.8 0.0 0.001 18.8 0.0 2.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.5 gi|159040740|ref|YP_001539992.1| - 0.00096 18.6 0.0 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|159040740|ref|YP_001539992.1| - 0.0014 18.7 0.0 0.003 17.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Phage_rep_org_N PF09681.5 gi|159040740|ref|YP_001539992.1| - 0.0019 17.7 1.0 0.014 14.9 0.0 2.4 2 1 1 3 3 3 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_20 PF12840.2 gi|159040740|ref|YP_001539992.1| - 0.0032 17.2 0.0 0.0068 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|159040740|ref|YP_001539992.1| - 0.0039 16.8 0.0 0.01 15.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|159040740|ref|YP_001539992.1| - 0.012 15.9 0.1 0.076 13.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|159040740|ref|YP_001539992.1| - 0.016 15.0 0.0 0.099 12.5 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|159040740|ref|YP_001539992.1| - 0.046 13.3 0.0 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|159040740|ref|YP_001539992.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family FaeA PF04703.7 gi|159040740|ref|YP_001539992.1| - 0.11 12.6 0.1 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein MR_MLE_C PF13378.1 gi|159040741|ref|YP_001539993.1| - 1.5e-23 82.8 0.0 3.1e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|159040741|ref|YP_001539993.1| - 1.9e-16 60.3 0.1 6.9e-16 58.5 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|159040741|ref|YP_001539993.1| - 2.4e-15 56.5 0.0 4.2e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ThiC PF01964.13 gi|159040741|ref|YP_001539993.1| - 0.089 11.2 0.0 0.13 10.7 0.0 1.2 1 0 0 1 1 1 0 ThiC family TruB_N PF01509.13 gi|159040742|ref|YP_001539994.1| - 5.3e-26 91.5 0.2 2.1e-22 79.8 0.2 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|159040742|ref|YP_001539994.1| - 9.4e-19 66.9 0.5 2.8e-18 65.4 0.1 2.0 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.7 gi|159040742|ref|YP_001539994.1| - 1.6e-18 66.4 0.1 5e-18 64.7 0.1 1.9 1 0 0 1 1 1 1 DKCLD (NUC011) domain Surf_Ag_VNR PF07244.10 gi|159040743|ref|YP_001539995.1| - 0.022 15.1 0.3 0.063 13.6 0.2 1.9 1 1 0 1 1 1 0 Surface antigen variable number repeat DUF3271 PF11675.3 gi|159040744|ref|YP_001539996.1| - 0.023 13.8 3.5 0.032 13.3 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3271) Apc3 PF12895.2 gi|159040744|ref|YP_001539996.1| - 0.04 14.0 0.4 0.04 14.0 0.3 2.0 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 Ribosomal_L14e PF01929.12 gi|159040745|ref|YP_001539997.1| - 3e-05 24.2 0.1 4.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|159040745|ref|YP_001539997.1| - 0.0041 16.7 3.4 0.011 15.4 2.4 1.7 1 0 0 1 1 1 1 KOW motif HAD_2 PF13419.1 gi|159040746|ref|YP_001539998.1| - 3.8e-16 59.8 0.0 4.9e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|159040746|ref|YP_001539998.1| - 1.4e-05 24.7 0.0 2.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|159040746|ref|YP_001539998.1| - 0.0056 17.1 0.0 0.0082 16.5 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF1743 PF08489.6 gi|159040747|ref|YP_001539999.1| - 1.1e-26 92.8 0.0 1.9e-26 92.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) zf-ribbon_3 PF13248.1 gi|159040747|ref|YP_001539999.1| - 0.0022 17.1 2.0 0.0041 16.2 1.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159040747|ref|YP_001539999.1| - 0.0052 16.2 2.4 0.011 15.1 1.6 1.5 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159040747|ref|YP_001539999.1| - 0.02 14.5 2.6 0.029 14.0 0.7 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|159040747|ref|YP_001539999.1| - 0.29 10.9 3.0 0.73 9.6 2.1 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|159040747|ref|YP_001539999.1| - 0.47 9.7 2.8 1.4 8.2 1.9 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|159040747|ref|YP_001539999.1| - 0.83 9.0 2.6 2.7 7.3 1.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|159040747|ref|YP_001539999.1| - 1.6 8.7 3.6 11 6.0 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-tcix PF14952.1 gi|159040747|ref|YP_001539999.1| - 2.2 7.7 7.9 0.56 9.5 0.7 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding MMPL PF03176.10 gi|159040748|ref|YP_001540000.1| - 2.3e-71 240.2 36.5 5.6e-43 146.9 6.8 2.3 2 0 0 2 2 2 2 MMPL family HTH_CodY PF08222.6 gi|159040749|ref|YP_001540001.1| - 0.062 12.6 1.3 0.25 10.7 0.1 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_12 PF08461.5 gi|159040749|ref|YP_001540001.1| - 0.073 12.8 0.3 0.19 11.5 0.2 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|159040749|ref|YP_001540001.1| - 0.076 13.3 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|159040749|ref|YP_001540001.1| - 0.083 12.7 0.2 0.31 10.8 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S19e PF01090.14 gi|159040749|ref|YP_001540001.1| - 0.14 11.5 0.1 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Ribosomal_L37e PF01907.14 gi|159040751|ref|YP_001540003.1| - 1.2e-18 66.6 10.0 1.5e-18 66.3 6.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|159040751|ref|YP_001540003.1| - 0.0091 15.7 0.7 0.013 15.3 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|159040751|ref|YP_001540003.1| - 0.012 15.5 0.7 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|159040751|ref|YP_001540003.1| - 0.041 13.5 3.0 0.069 12.8 2.1 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS NMD3 PF04981.8 gi|159040751|ref|YP_001540003.1| - 0.12 11.5 0.6 0.13 11.3 0.4 1.1 1 0 0 1 1 1 0 NMD3 family Mu-like_Com PF10122.4 gi|159040751|ref|YP_001540003.1| - 0.14 11.2 3.4 0.25 10.4 2.3 1.5 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-ribbon_3 PF13248.1 gi|159040751|ref|YP_001540003.1| - 0.15 11.3 6.2 1.3 8.2 4.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|159040751|ref|YP_001540003.1| - 0.18 11.6 6.2 0.68 9.7 3.7 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|159040751|ref|YP_001540003.1| - 0.18 11.4 0.7 0.32 10.6 0.1 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|159040751|ref|YP_001540003.1| - 0.31 10.5 9.2 0.61 9.6 0.6 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF164 PF02591.10 gi|159040751|ref|YP_001540003.1| - 0.4 10.5 0.1 0.4 10.5 0.1 2.4 2 1 1 3 3 3 0 Putative zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|159040751|ref|YP_001540003.1| - 2.1 7.9 7.3 21 4.7 5.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Carla_C4 PF01623.12 gi|159040751|ref|YP_001540003.1| - 3.9 7.2 8.1 0.48 10.1 1.7 1.9 1 1 1 2 2 2 0 Carlavirus putative nucleic acid binding protein UPF0547 PF10571.4 gi|159040751|ref|YP_001540003.1| - 6.9 6.4 7.1 14 5.5 1.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2752 PF10825.3 gi|159040751|ref|YP_001540003.1| - 8.4 6.5 6.2 13 5.9 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2752) Peptidase_M24 PF00557.19 gi|159040752|ref|YP_001540004.1| - 3.4e-45 154.1 0.0 3.9e-45 153.9 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Phage_Coat_B PF05356.6 gi|159040752|ref|YP_001540004.1| - 0.0024 17.4 0.1 0.033 13.8 0.1 2.3 1 1 0 1 1 1 1 Phage Coat protein B RasGAP PF00616.14 gi|159040752|ref|YP_001540004.1| - 0.056 13.0 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase PPP4R2 PF09184.6 gi|159040752|ref|YP_001540004.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 PPP4R2 gerPA PF10676.4 gi|159040752|ref|YP_001540004.1| - 0.11 12.3 0.1 0.39 10.5 0.1 1.8 2 0 0 2 2 2 0 Spore germination protein gerPA/gerPF tRNA-synt_1 PF00133.17 gi|159040753|ref|YP_001540005.1| - 4.1e-112 375.1 0.0 5e-111 371.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|159040753|ref|YP_001540005.1| - 3.5e-26 91.7 0.0 1.3e-14 53.6 0.0 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|159040753|ref|YP_001540005.1| - 4.2e-25 88.3 0.0 7.2e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|159040753|ref|YP_001540005.1| - 2.6e-05 23.6 0.0 0.0029 16.9 0.0 2.7 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|159040753|ref|YP_001540005.1| - 0.00076 18.2 0.0 0.11 11.1 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (K) RNase_PH PF01138.16 gi|159040754|ref|YP_001540006.1| - 9.8e-38 129.4 0.0 1.3e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|159040754|ref|YP_001540006.1| - 1.2e-17 63.5 0.0 2.3e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|159040755|ref|YP_001540007.1| - 2.6e-29 102.1 0.0 3.9e-29 101.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|159040755|ref|YP_001540007.1| - 9.6e-10 38.2 0.3 2.4e-09 37.0 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 Toprim_4 PF13662.1 gi|159040756|ref|YP_001540008.1| - 7e-08 32.3 0.5 2.1e-07 30.8 0.3 1.9 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|159040756|ref|YP_001540008.1| - 0.0018 18.1 2.6 0.0022 17.9 0.1 2.4 3 0 0 3 3 3 1 Toprim domain MCPVI PF02993.9 gi|159040756|ref|YP_001540008.1| - 0.1 12.7 13.4 0.16 12.0 9.3 1.2 1 0 0 1 1 1 0 Minor capsid protein VI HXXSHH PF07586.6 gi|159040756|ref|YP_001540008.1| - 1.5 7.7 5.4 3.4 6.5 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) Stn1 PF10451.4 gi|159040756|ref|YP_001540008.1| - 2.1 7.1 5.5 3.4 6.4 3.8 1.3 1 0 0 1 1 1 0 Telomere regulation protein Stn1 PAT1 PF09770.4 gi|159040756|ref|YP_001540008.1| - 3.7 5.6 19.7 5 5.2 13.6 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 Glyco_hydro_57 PF03065.10 gi|159040758|ref|YP_001540010.1| - 1.9e-53 181.6 0.2 1.3e-52 178.8 0.1 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|159040758|ref|YP_001540010.1| - 0.0069 16.0 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase Bac_rhamnosid PF05592.6 gi|159040759|ref|YP_001540011.1| - 1.9e-157 524.5 0.1 2.5e-157 524.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Bac_rhamnosid_N PF08531.5 gi|159040759|ref|YP_001540011.1| - 4.6e-51 172.7 0.0 8.7e-51 171.8 0.0 1.5 1 0 0 1 1 1 1 Alpha-L-rhamnosidase N-terminal domain Trehalase PF01204.13 gi|159040759|ref|YP_001540011.1| - 0.024 13.3 0.0 0.036 12.6 0.0 1.1 1 0 0 1 1 1 0 Trehalase ADH_N PF08240.7 gi|159040760|ref|YP_001540012.1| - 1.1e-31 108.8 0.1 2e-31 107.9 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159040760|ref|YP_001540012.1| - 3.6e-24 84.7 0.0 5.1e-24 84.2 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|159040760|ref|YP_001540012.1| - 8.5e-05 22.5 0.1 0.00015 21.7 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain ThiF PF00899.16 gi|159040760|ref|YP_001540012.1| - 9.6e-05 22.2 0.6 0.013 15.3 0.4 2.4 1 1 1 2 2 2 1 ThiF family ADH_zinc_N_2 PF13602.1 gi|159040760|ref|YP_001540012.1| - 0.00013 22.8 0.0 0.00021 22.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.2 gi|159040760|ref|YP_001540012.1| - 0.00033 21.1 0.1 0.0021 18.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain ADH_N_assoc PF13823.1 gi|159040760|ref|YP_001540012.1| - 0.0059 16.2 0.2 0.011 15.3 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Shikimate_DH PF01488.15 gi|159040760|ref|YP_001540012.1| - 0.012 15.6 0.1 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Methyltransf_11 PF08241.7 gi|159040760|ref|YP_001540012.1| - 0.012 16.0 0.0 0.049 14.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain FAD_binding_3 PF01494.14 gi|159040760|ref|YP_001540012.1| - 0.04 12.9 0.0 0.056 12.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Saccharop_dh PF03435.13 gi|159040760|ref|YP_001540012.1| - 0.042 12.8 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase MR_MLE_C PF13378.1 gi|159040761|ref|YP_001540013.1| - 5.2e-19 68.2 0.0 8.8e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|159040761|ref|YP_001540013.1| - 4.3e-15 55.7 0.0 7.6e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|159040761|ref|YP_001540013.1| - 3.2e-12 46.8 0.0 6e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain FbpA PF05833.6 gi|159040762|ref|YP_001540014.1| - 8.4e-30 103.6 0.0 1.2e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|159040762|ref|YP_001540014.1| - 1.4e-26 92.2 0.2 1.1e-25 89.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF814) BLOC1_2 PF10046.4 gi|159040762|ref|YP_001540014.1| - 0.0026 17.8 1.9 0.35 11.0 0.1 2.4 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|159040762|ref|YP_001540014.1| - 0.0044 16.6 3.2 0.17 11.4 0.1 2.2 2 0 0 2 2 2 1 IncA protein Biotin_lipoyl_2 PF13533.1 gi|159040762|ref|YP_001540014.1| - 0.027 14.1 0.6 0.67 9.6 0.3 2.7 2 0 0 2 2 2 0 Biotin-lipoyl like AAA_13 PF13166.1 gi|159040762|ref|YP_001540014.1| - 0.032 12.6 2.8 1.1 7.5 0.6 2.0 2 0 0 2 2 2 0 AAA domain Lebercilin PF15619.1 gi|159040762|ref|YP_001540014.1| - 0.047 13.1 3.1 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Seryl_tRNA_N PF02403.17 gi|159040762|ref|YP_001540014.1| - 0.054 13.5 4.3 0.41 10.6 0.6 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3441 PF11923.3 gi|159040762|ref|YP_001540014.1| - 0.066 12.8 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3441) Laminin_II PF06009.7 gi|159040762|ref|YP_001540014.1| - 0.068 12.9 0.7 5.3 6.7 0.1 2.4 2 0 0 2 2 2 0 Laminin Domain II Tropomyosin_1 PF12718.2 gi|159040762|ref|YP_001540014.1| - 0.076 12.8 4.6 0.61 9.9 0.5 2.2 2 0 0 2 2 2 0 Tropomyosin like Fzo_mitofusin PF04799.8 gi|159040762|ref|YP_001540014.1| - 0.084 12.2 0.4 0.25 10.6 0.0 1.8 2 0 0 2 2 2 0 fzo-like conserved region Prefoldin_2 PF01920.15 gi|159040762|ref|YP_001540014.1| - 0.093 12.4 4.8 6.8 6.5 1.6 2.4 2 0 0 2 2 2 0 Prefoldin subunit Prefoldin PF02996.12 gi|159040762|ref|YP_001540014.1| - 0.11 12.2 3.1 1.1 8.8 0.5 2.4 2 0 0 2 2 2 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|159040762|ref|YP_001540014.1| - 0.13 12.7 1.1 2.1 8.7 0.0 2.4 2 0 0 2 2 2 0 MerR, DNA binding Jnk-SapK_ap_N PF09744.4 gi|159040762|ref|YP_001540014.1| - 0.14 12.1 6.3 0.49 10.3 0.6 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 TMF_DNA_bd PF12329.3 gi|159040762|ref|YP_001540014.1| - 0.14 11.9 7.0 1.5 8.6 1.5 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4140 PF13600.1 gi|159040762|ref|YP_001540014.1| - 0.15 12.4 2.5 16 5.9 0.2 2.6 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) MAD PF05557.8 gi|159040762|ref|YP_001540014.1| - 0.22 9.5 3.0 0.82 7.6 0.1 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein COG2 PF06148.6 gi|159040762|ref|YP_001540014.1| - 0.23 11.3 1.5 12 5.8 0.0 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 PspA_IM30 PF04012.7 gi|159040762|ref|YP_001540014.1| - 0.24 10.7 6.1 0.35 10.2 2.0 2.1 2 0 0 2 2 2 0 PspA/IM30 family Herpes_U30 PF04523.8 gi|159040762|ref|YP_001540014.1| - 0.25 8.7 0.0 0.37 8.2 0.0 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 DUF972 PF06156.8 gi|159040762|ref|YP_001540014.1| - 0.36 11.1 1.1 22 5.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) SecA_DEAD PF07517.9 gi|159040762|ref|YP_001540014.1| - 0.45 9.7 2.0 5.3 6.2 0.0 2.1 1 1 1 2 2 2 0 SecA DEAD-like domain Myosin_tail_1 PF01576.14 gi|159040762|ref|YP_001540014.1| - 0.45 8.1 6.9 0.21 9.2 1.5 1.9 2 0 0 2 2 2 0 Myosin tail TPR_MLP1_2 PF07926.7 gi|159040762|ref|YP_001540014.1| - 0.46 10.2 7.0 0.44 10.2 1.9 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein GrpE PF01025.14 gi|159040762|ref|YP_001540014.1| - 0.48 9.9 9.8 0.56 9.7 0.1 2.3 1 1 1 2 2 2 0 GrpE DivIC PF04977.10 gi|159040762|ref|YP_001540014.1| - 0.48 9.9 4.8 7.9 6.0 1.1 2.4 2 0 0 2 2 2 0 Septum formation initiator DUF4164 PF13747.1 gi|159040762|ref|YP_001540014.1| - 0.71 10.0 5.9 7.3 6.7 1.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) APG6 PF04111.7 gi|159040762|ref|YP_001540014.1| - 1.8 7.5 4.8 12 4.7 0.1 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 Sipho_Gp157 PF05565.6 gi|159040762|ref|YP_001540014.1| - 2.4 7.7 6.0 6.2 6.3 1.0 2.4 2 0 0 2 2 2 0 Siphovirus Gp157 CENP-Q PF13094.1 gi|159040762|ref|YP_001540014.1| - 2.5 8.1 5.2 0.68 9.9 0.6 1.9 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit CCDC-167 PF15188.1 gi|159040762|ref|YP_001540014.1| - 7.7 6.5 6.6 25 4.8 0.3 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Voltage_CLC PF00654.15 gi|159040763|ref|YP_001540015.1| - 7.8e-89 298.1 38.0 3e-88 296.2 20.0 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|159040763|ref|YP_001540015.1| - 1e-18 66.7 0.0 5.3e-08 32.5 0.0 2.4 2 0 0 2 2 2 2 CBS domain GAF_2 PF13185.1 gi|159040763|ref|YP_001540015.1| - 7.2e-05 23.3 0.0 0.62 10.5 0.0 2.6 2 0 0 2 2 2 2 GAF domain H_kinase_N PF12282.3 gi|159040763|ref|YP_001540015.1| - 0.2 11.2 0.0 23 4.5 0.0 2.2 2 0 0 2 2 2 0 Signal transduction histidine kinase Arch_ATPase PF01637.13 gi|159040764|ref|YP_001540016.1| - 2.2e-25 89.7 2.1 4.8e-25 88.6 1.5 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|159040764|ref|YP_001540016.1| - 1.3e-07 31.5 0.2 0.015 15.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|159040764|ref|YP_001540016.1| - 4e-06 26.9 0.0 7.9e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_35 PF14516.1 gi|159040764|ref|YP_001540016.1| - 5.2e-06 25.3 0.1 0.0083 14.7 0.0 2.3 2 1 0 2 2 2 2 AAA-like domain MMR_HSR1 PF01926.18 gi|159040764|ref|YP_001540016.1| - 0.046 13.6 0.1 0.077 12.9 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase TRADD_N PF09034.5 gi|159040764|ref|YP_001540016.1| - 0.065 13.2 0.1 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 TRADD, N-terminal domain AAA_16 PF13191.1 gi|159040765|ref|YP_001540017.1| - 0.00078 19.4 0.5 0.037 14.0 0.0 3.2 2 2 1 3 3 3 1 AAA ATPase domain AAA PF00004.24 gi|159040765|ref|YP_001540017.1| - 0.0016 18.6 0.2 0.0063 16.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IF2_N PF04760.10 gi|159040765|ref|YP_001540017.1| - 0.01 15.4 0.1 9.9 5.9 0.0 3.9 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Arch_ATPase PF01637.13 gi|159040765|ref|YP_001540017.1| - 0.012 15.2 5.5 0.04 13.6 0.0 3.7 3 1 0 3 3 3 0 Archaeal ATPase DUF883 PF05957.8 gi|159040765|ref|YP_001540017.1| - 0.013 15.8 0.9 10 6.5 0.0 4.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF815 PF05673.8 gi|159040765|ref|YP_001540017.1| - 0.019 13.9 0.0 0.096 11.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) HALZ PF02183.13 gi|159040765|ref|YP_001540017.1| - 0.12 12.0 2.2 1.1 9.0 0.6 2.8 2 0 0 2 2 2 0 Homeobox associated leucine zipper GnsAB PF08178.6 gi|159040765|ref|YP_001540017.1| - 0.34 10.6 5.2 1.3 8.7 1.3 3.6 4 0 0 4 4 4 0 GnsA/GnsB family Phasin PF05597.6 gi|159040765|ref|YP_001540017.1| - 3.5 7.3 6.8 18 5.0 1.1 3.5 3 2 0 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) NurA PF09376.5 gi|159040767|ref|YP_001540019.1| - 8.2e-09 35.3 0.4 2.2e-08 33.8 0.3 1.7 1 1 0 1 1 1 1 NurA domain TrmB PF01978.14 gi|159040768|ref|YP_001540020.1| - 5.7e-08 32.3 0.4 8.7e-08 31.7 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|159040768|ref|YP_001540020.1| - 1.1e-06 28.1 0.0 1.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|159040768|ref|YP_001540020.1| - 4e-05 23.8 0.0 8.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|159040768|ref|YP_001540020.1| - 0.00027 20.4 0.0 0.00062 19.3 0.0 1.5 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|159040768|ref|YP_001540020.1| - 0.00058 19.1 0.4 0.0016 17.7 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|159040768|ref|YP_001540020.1| - 0.00091 18.8 0.0 0.0019 17.8 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|159040768|ref|YP_001540020.1| - 0.0018 18.1 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|159040768|ref|YP_001540020.1| - 0.0026 17.5 0.2 0.0037 17.0 0.1 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|159040768|ref|YP_001540020.1| - 0.0031 17.6 0.1 0.0046 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|159040768|ref|YP_001540020.1| - 0.0076 15.8 0.5 0.012 15.1 0.1 1.5 2 0 0 2 2 1 1 HTH domain TFIIE_alpha PF02002.12 gi|159040768|ref|YP_001540020.1| - 0.0095 15.4 0.2 0.017 14.5 0.1 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|159040768|ref|YP_001540020.1| - 0.0098 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|159040768|ref|YP_001540020.1| - 0.012 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|159040768|ref|YP_001540020.1| - 0.014 15.4 0.1 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF2250 PF10007.4 gi|159040768|ref|YP_001540020.1| - 0.023 14.6 0.1 0.053 13.4 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_38 PF13936.1 gi|159040768|ref|YP_001540020.1| - 0.039 13.5 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|159040768|ref|YP_001540020.1| - 0.048 13.6 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|159040768|ref|YP_001540020.1| - 0.053 13.6 0.9 0.074 13.1 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|159040768|ref|YP_001540020.1| - 0.053 12.9 0.0 0.093 12.1 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Mga PF05043.8 gi|159040768|ref|YP_001540020.1| - 0.06 13.6 0.0 0.094 13.0 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|159040769|ref|YP_001540021.1| - 0.8 9.2 3.6 0.38 10.3 0.2 2.1 3 0 0 3 3 3 0 N-terminal phage replisome organiser (Phage_rep_org_N) AhpC-TSA PF00578.16 gi|159040770|ref|YP_001540022.1| - 2.1e-35 121.1 0.0 2.4e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|159040770|ref|YP_001540022.1| - 1.9e-24 85.8 0.0 2.2e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|159040770|ref|YP_001540022.1| - 0.0014 18.0 0.0 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|159040770|ref|YP_001540022.1| - 0.0022 17.9 0.0 0.057 13.3 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.1 gi|159040770|ref|YP_001540022.1| - 0.028 14.5 0.1 0.058 13.5 0.0 1.6 1 1 1 2 2 2 0 Thioredoxin-like Pterin_bind PF00809.17 gi|159040771|ref|YP_001540023.1| - 3e-33 114.9 0.0 5.6e-33 114.0 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme RNA_pol_Rpb1_1 PF04997.7 gi|159040772|ref|YP_001540024.1| - 1.4e-80 271.0 0.0 2.9e-80 270.0 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|159040772|ref|YP_001540024.1| - 2e-67 226.2 0.0 4.6e-67 225.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|159040772|ref|YP_001540024.1| - 5.3e-32 110.7 0.0 9.1e-32 109.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|159040772|ref|YP_001540024.1| - 1.7e-28 99.6 0.1 3e-28 98.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|159040772|ref|YP_001540024.1| - 4.4e-28 97.1 0.0 9.3e-28 96.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 CpXC PF14353.1 gi|159040772|ref|YP_001540024.1| - 0.016 15.2 0.3 1.9 8.4 0.2 2.5 2 0 0 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|159040772|ref|YP_001540024.1| - 0.019 14.8 4.6 24 5.0 0.1 3.5 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|159040772|ref|YP_001540024.1| - 0.039 13.1 9.9 0.013 14.6 2.5 2.7 2 1 0 2 2 2 0 zinc-ribbon domain FbpA PF05833.6 gi|159040772|ref|YP_001540024.1| - 0.041 12.4 0.8 0.068 11.6 0.6 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DZR PF12773.2 gi|159040772|ref|YP_001540024.1| - 0.21 11.4 3.5 12 5.8 0.0 2.7 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|159040772|ref|YP_001540024.1| - 0.48 10.1 3.7 36 4.1 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|159040772|ref|YP_001540024.1| - 0.87 9.2 4.7 36 4.0 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159040772|ref|YP_001540024.1| - 1.8 8.1 10.3 3.1 7.4 0.7 3.0 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|159040773|ref|YP_001540025.1| - 7.3e-48 163.2 0.8 1.1e-47 162.6 0.6 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF4085 PF13315.1 gi|159040773|ref|YP_001540025.1| - 0.036 13.4 0.1 0.069 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4085) Phage_rep_O PF04492.8 gi|159040773|ref|YP_001540025.1| - 0.045 13.9 1.3 0.19 11.9 0.0 2.6 3 0 0 3 3 3 0 Bacteriophage replication protein O Grp1_Fun34_YaaH PF01184.14 gi|159040774|ref|YP_001540026.1| - 2e-28 99.1 20.8 2.8e-28 98.6 14.4 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF4131 PF13567.1 gi|159040774|ref|YP_001540026.1| - 3.3 7.0 15.0 0.39 10.1 3.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) MarR PF01047.17 gi|159040775|ref|YP_001540027.1| - 8.3e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|159040775|ref|YP_001540027.1| - 0.00057 19.8 0.0 0.001 19.1 0.0 1.6 1 1 0 1 1 1 1 HemN C-terminal domain HTH_24 PF13412.1 gi|159040775|ref|YP_001540027.1| - 0.00087 18.6 0.1 0.0017 17.7 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|159040775|ref|YP_001540027.1| - 0.00089 18.8 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|159040775|ref|YP_001540027.1| - 0.0012 18.7 0.1 0.0015 18.3 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|159040775|ref|YP_001540027.1| - 0.0015 18.1 0.3 0.0025 17.4 0.2 1.5 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|159040775|ref|YP_001540027.1| - 0.0048 16.5 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|159040775|ref|YP_001540027.1| - 0.0069 16.1 0.0 0.0081 15.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|159040775|ref|YP_001540027.1| - 0.026 14.6 0.2 0.035 14.2 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.16 gi|159040775|ref|YP_001540027.1| - 0.034 13.5 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_15 PF12324.3 gi|159040775|ref|YP_001540027.1| - 0.044 13.4 0.0 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_27 PF13463.1 gi|159040775|ref|YP_001540027.1| - 0.058 13.7 0.0 0.065 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|159040775|ref|YP_001540027.1| - 0.079 12.5 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|159040775|ref|YP_001540027.1| - 0.093 12.5 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|159040775|ref|YP_001540027.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain YwpF PF14183.1 gi|159040775|ref|YP_001540027.1| - 0.13 11.9 0.1 0.14 11.8 0.1 1.1 1 0 0 1 1 1 0 YwpF-like protein AA_permease_2 PF13520.1 gi|159040776|ref|YP_001540028.1| - 3.8e-17 61.9 61.2 5.1e-17 61.5 42.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159040776|ref|YP_001540028.1| - 5.8e-06 24.9 60.4 1.3e-05 23.7 41.9 1.5 1 1 0 1 1 1 1 Amino acid permease Aminotran_5 PF00266.14 gi|159040777|ref|YP_001540029.1| - 2.1e-26 92.5 0.0 2.8e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|159040777|ref|YP_001540029.1| - 0.0014 17.0 0.0 0.0021 16.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|159040777|ref|YP_001540029.1| - 0.063 12.3 0.2 0.091 11.7 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peptidase_M48 PF01435.13 gi|159040779|ref|YP_001540031.1| - 4.1e-18 65.7 0.0 6.6e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|159040779|ref|YP_001540031.1| - 0.0045 15.9 5.4 0.027 13.4 3.8 2.2 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF2201_N PF13203.1 gi|159040779|ref|YP_001540031.1| - 0.072 12.2 0.1 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain SprT-like PF10263.4 gi|159040779|ref|YP_001540031.1| - 0.22 11.1 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Ago_hook PF10427.4 gi|159040780|ref|YP_001540032.1| - 0.045 13.8 0.0 0.078 13.0 0.0 1.3 1 0 0 1 1 1 0 Argonaute hook H_PPase PF03030.11 gi|159040783|ref|YP_001540035.1| - 7.4e-224 744.9 35.4 8.4e-224 744.7 24.5 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Enolase_C PF00113.17 gi|159040784|ref|YP_001540036.1| - 1.6e-62 211.1 0.0 2e-62 210.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|159040784|ref|YP_001540036.1| - 1.4e-31 109.1 0.0 2.2e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|159040784|ref|YP_001540036.1| - 0.0023 18.4 0.0 0.0066 16.9 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBDS PF01172.13 gi|159040785|ref|YP_001540037.1| - 5.3e-24 83.8 0.0 1e-23 82.9 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|159040785|ref|YP_001540037.1| - 3.3e-20 72.0 0.1 4.5e-20 71.6 0.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.6 gi|159040785|ref|YP_001540037.1| - 0.0022 17.5 0.0 0.0048 16.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|159040785|ref|YP_001540037.1| - 0.04 13.7 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Elongation factor G C-terminus RE_HpaII PF09561.5 gi|159040785|ref|YP_001540037.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 HpaII restriction endonuclease eIF-6 PF01912.13 gi|159040786|ref|YP_001540038.1| - 1e-67 227.1 1.3 1.2e-67 226.9 0.9 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_S27e PF01667.12 gi|159040787|ref|YP_001540039.1| - 1.4e-19 69.3 0.2 1.5e-19 69.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|159040787|ref|YP_001540039.1| - 1.4e-05 24.2 0.5 2e-05 23.8 0.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF3797 PF12677.2 gi|159040787|ref|YP_001540039.1| - 0.0076 15.8 3.4 0.014 14.9 0.2 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) Mu-like_Com PF10122.4 gi|159040787|ref|YP_001540039.1| - 0.011 14.7 2.1 0.18 10.9 0.1 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com HypA PF01155.14 gi|159040787|ref|YP_001540039.1| - 0.021 14.4 0.1 0.026 14.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|159040787|ref|YP_001540039.1| - 0.047 13.3 0.5 5.2 6.7 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|159040787|ref|YP_001540039.1| - 0.048 12.8 0.2 3.9 6.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|159040787|ref|YP_001540039.1| - 0.048 13.3 0.4 3.2 7.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|159040787|ref|YP_001540039.1| - 0.069 12.9 0.2 0.093 12.5 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-BED PF02892.10 gi|159040787|ref|YP_001540039.1| - 0.082 12.6 1.8 3.2 7.5 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger zinc_ribbon_6 PF14599.1 gi|159040787|ref|YP_001540039.1| - 0.11 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon C1_1 PF00130.17 gi|159040787|ref|YP_001540039.1| - 0.14 11.9 0.4 0.19 11.5 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ISL3 PF14690.1 gi|159040787|ref|YP_001540039.1| - 0.14 12.2 0.7 0.36 10.8 0.4 1.8 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RanBP PF00641.13 gi|159040787|ref|YP_001540039.1| - 0.19 10.8 2.6 2.6 7.2 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others RRN7 PF11781.3 gi|159040787|ref|YP_001540039.1| - 0.21 11.1 1.9 8.3 6.0 0.3 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 RNA_pol_N PF01194.12 gi|159040787|ref|YP_001540039.1| - 0.25 11.4 1.4 5.5 7.0 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit zinc_ribbon_5 PF13719.1 gi|159040787|ref|YP_001540039.1| - 0.32 10.5 4.8 4.2 7.0 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain ZZ PF00569.12 gi|159040787|ref|YP_001540039.1| - 0.35 10.4 2.5 0.82 9.2 1.8 1.6 1 1 0 1 1 1 0 Zinc finger, ZZ type zinc_ribbon_4 PF13717.1 gi|159040787|ref|YP_001540039.1| - 0.37 10.5 5.2 6 6.6 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|159040787|ref|YP_001540039.1| - 1.1 8.7 11.0 1.9 7.9 0.5 2.8 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-DNL PF05180.7 gi|159040787|ref|YP_001540039.1| - 1.6 8.5 3.8 1.2 8.8 0.3 1.9 1 1 1 2 2 2 0 DNL zinc finger RecR PF02132.10 gi|159040787|ref|YP_001540039.1| - 1.6 8.1 4.3 11 5.5 0.0 2.2 2 0 0 2 2 2 0 RecR protein DNA_RNApol_7kD PF03604.8 gi|159040787|ref|YP_001540039.1| - 6.4 6.3 6.9 5.3 6.6 0.8 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L31e PF01198.14 gi|159040788|ref|YP_001540040.1| - 5.6e-23 80.4 1.7 6.7e-23 80.1 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e MinE PF03776.9 gi|159040788|ref|YP_001540040.1| - 0.012 15.1 0.1 0.24 10.9 0.1 2.2 2 0 0 2 2 2 0 Septum formation topological specificity factor MinE Utp12 PF04003.7 gi|159040788|ref|YP_001540040.1| - 0.1 12.5 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Dip2/Utp12 Family Ribosomal_L39 PF00832.15 gi|159040789|ref|YP_001540041.1| - 3.8e-21 74.2 7.4 4.2e-21 74.1 5.2 1.0 1 0 0 1 1 1 1 Ribosomal L39 protein Rz1 PF06085.6 gi|159040789|ref|YP_001540041.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor dsDNA_bind PF01984.15 gi|159040790|ref|YP_001540042.1| - 1.3e-28 99.1 11.5 1.5e-28 98.8 8.0 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain BAH PF01426.13 gi|159040790|ref|YP_001540042.1| - 0.071 12.8 0.4 0.078 12.7 0.3 1.2 1 0 0 1 1 1 0 BAH domain YopR_core PF09025.5 gi|159040790|ref|YP_001540042.1| - 0.08 12.9 0.6 0.098 12.6 0.4 1.2 1 0 0 1 1 1 0 YopR Core CENP-Q PF13094.1 gi|159040790|ref|YP_001540042.1| - 0.096 12.7 8.3 0.12 12.3 5.7 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2514 PF10721.4 gi|159040790|ref|YP_001540042.1| - 0.19 11.3 5.3 0.22 11.2 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2514) OmpH PF03938.9 gi|159040790|ref|YP_001540042.1| - 0.24 11.3 2.6 0.27 11.1 1.8 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Radial_spoke_3 PF06098.6 gi|159040790|ref|YP_001540042.1| - 0.77 8.7 10.1 0.94 8.4 7.0 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 Selenoprotein_S PF06936.6 gi|159040790|ref|YP_001540042.1| - 1.1 8.7 7.1 1.5 8.3 4.9 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) DUF4011 PF13195.1 gi|159040790|ref|YP_001540042.1| - 3.5 7.5 7.5 6.6 6.7 5.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4011) ELFV_dehydrog PF00208.16 gi|159040791|ref|YP_001540043.1| - 6.6e-69 232.1 1.9 8.7e-69 231.7 1.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|159040791|ref|YP_001540043.1| - 2.1e-47 159.9 0.0 3.5e-47 159.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|159040791|ref|YP_001540043.1| - 0.00083 18.5 0.2 0.0015 17.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|159040791|ref|YP_001540043.1| - 0.028 14.0 0.1 0.061 12.8 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Bac_GDH PF05088.7 gi|159040791|ref|YP_001540043.1| - 0.073 10.4 0.0 0.1 9.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AA_permease_2 PF13520.1 gi|159040792|ref|YP_001540044.1| - 1.8e-25 89.3 66.0 2.3e-25 89.0 45.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159040792|ref|YP_001540044.1| - 0.0056 15.0 60.6 0.0087 14.4 42.0 1.3 1 0 0 1 1 1 1 Amino acid permease Peptidase_M42 PF05343.9 gi|159040793|ref|YP_001540045.1| - 9.9e-87 290.3 0.0 1.1e-86 290.1 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|159040793|ref|YP_001540045.1| - 3.9e-06 26.5 0.0 5.7e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|159040793|ref|YP_001540045.1| - 0.00011 22.0 0.1 0.00041 20.1 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|159040793|ref|YP_001540045.1| - 0.066 11.7 0.1 0.17 10.3 0.1 1.6 1 1 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) GD_AH_C PF04295.8 gi|159040794|ref|YP_001540046.1| - 1.2e-156 521.3 2.9 1.3e-156 521.2 2.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.7 gi|159040795|ref|YP_001540047.1| - 4.4e-18 65.4 0.3 1.3e-17 63.9 0.2 1.7 1 1 0 1 1 1 1 SAF domain NAD_binding_2 PF03446.10 gi|159040796|ref|YP_001540048.1| - 5.9e-52 175.7 0.0 1.1e-51 174.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|159040796|ref|YP_001540048.1| - 7.2e-30 103.5 0.1 9.8e-30 103.1 0.1 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|159040796|ref|YP_001540048.1| - 5.8e-07 28.8 0.0 9.4e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|159040796|ref|YP_001540048.1| - 6.9e-07 29.6 0.1 3.2e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|159040796|ref|YP_001540048.1| - 5.9e-05 23.1 0.0 0.00015 21.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|159040796|ref|YP_001540048.1| - 0.0006 19.2 0.0 0.0017 17.7 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|159040796|ref|YP_001540048.1| - 0.0021 17.7 0.0 0.0075 15.9 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|159040796|ref|YP_001540048.1| - 0.055 12.9 0.0 0.41 10.0 0.0 2.1 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|159040796|ref|YP_001540048.1| - 0.075 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain GFO_IDH_MocA PF01408.17 gi|159040796|ref|YP_001540048.1| - 0.13 12.8 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-synt_D PF01813.12 gi|159040797|ref|YP_001540049.1| - 8.4e-40 136.4 0.6 9.4e-40 136.2 0.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Pyr_redox_2 PF07992.9 gi|159040798|ref|YP_001540050.1| - 1.5e-31 109.9 0.2 1.8e-31 109.6 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|159040798|ref|YP_001540050.1| - 1.9e-18 67.2 0.9 1.1e-13 51.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159040798|ref|YP_001540050.1| - 1.2e-16 60.8 1.7 8.3e-12 45.3 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159040798|ref|YP_001540050.1| - 9e-10 37.9 9.3 8.5e-05 21.5 1.4 4.0 4 0 0 4 4 4 3 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|159040798|ref|YP_001540050.1| - 3.6e-07 29.3 5.6 3.1e-05 22.9 1.4 3.2 4 0 0 4 4 4 2 FAD binding domain DAO PF01266.19 gi|159040798|ref|YP_001540050.1| - 4.6e-07 29.0 7.5 0.00028 19.8 1.3 3.1 2 1 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|159040798|ref|YP_001540050.1| - 8.3e-07 28.3 1.0 0.00015 20.9 0.2 2.2 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.2 gi|159040798|ref|YP_001540050.1| - 9.3e-07 28.2 1.4 6.4e-06 25.5 0.1 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|159040798|ref|YP_001540050.1| - 1.8e-06 27.2 2.5 0.0037 16.3 1.0 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|159040798|ref|YP_001540050.1| - 2e-06 26.5 4.1 0.0016 17.0 1.1 3.8 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|159040798|ref|YP_001540050.1| - 1.3e-05 25.1 2.1 0.0018 18.2 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|159040798|ref|YP_001540050.1| - 1.4e-05 25.3 0.2 0.059 13.6 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|159040798|ref|YP_001540050.1| - 5.1e-05 22.3 0.1 0.0031 16.4 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|159040798|ref|YP_001540050.1| - 0.0002 20.4 1.3 0.1 11.5 0.2 3.0 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|159040798|ref|YP_001540050.1| - 0.0072 16.1 1.7 4.2 7.1 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|159040798|ref|YP_001540050.1| - 0.01 15.9 0.3 0.59 10.2 0.0 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|159040798|ref|YP_001540050.1| - 0.16 11.5 0.6 0.34 10.4 0.2 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF697 PF05128.7 gi|159040798|ref|YP_001540050.1| - 0.31 10.5 2.3 2.7 7.4 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF697) Trp_halogenase PF04820.9 gi|159040798|ref|YP_001540050.1| - 1.3 7.5 5.2 1.9 7.0 1.4 2.0 2 0 0 2 2 2 0 Tryptophan halogenase AsnC_trans_reg PF01037.16 gi|159040799|ref|YP_001540051.1| - 2.1e-12 46.5 0.2 2.2e-12 46.4 0.2 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|159040799|ref|YP_001540051.1| - 0.12 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 GYD domain HTH_7 PF02796.10 gi|159040800|ref|YP_001540052.1| - 0.092 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sod_Fe_C PF02777.13 gi|159040801|ref|YP_001540053.1| - 2.9e-33 113.8 0.1 5e-33 113.1 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|159040801|ref|YP_001540053.1| - 4.1e-29 100.6 0.6 4.1e-29 100.6 0.4 2.2 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Thioredoxin_6 PF13848.1 gi|159040801|ref|YP_001540053.1| - 0.0052 16.6 0.0 0.0093 15.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Toxin_52 PF15605.1 gi|159040801|ref|YP_001540053.1| - 0.0091 15.8 0.0 0.027 14.3 0.0 1.8 1 1 0 1 1 1 1 Putative toxin 52 AsnC_trans_reg PF01037.16 gi|159040802|ref|YP_001540054.1| - 6.7e-09 35.3 0.1 1.2e-08 34.4 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_5 PF01022.15 gi|159040802|ref|YP_001540054.1| - 1.2e-07 31.2 0.1 1.1e-06 28.2 0.1 2.3 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|159040802|ref|YP_001540054.1| - 6.4e-07 29.0 0.2 2.4e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|159040802|ref|YP_001540054.1| - 1.6e-06 27.6 0.2 3.1e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|159040802|ref|YP_001540054.1| - 2.3e-06 26.9 0.2 8e-05 21.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|159040802|ref|YP_001540054.1| - 3.2e-06 26.8 0.6 6.5e-06 25.8 0.1 1.8 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|159040802|ref|YP_001540054.1| - 0.0002 20.9 1.4 0.0044 16.6 0.8 2.6 1 1 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.11 gi|159040802|ref|YP_001540054.1| - 0.0016 17.9 2.2 0.011 15.3 1.6 2.1 1 1 0 1 1 1 1 LexA DNA binding domain HTH_8 PF02954.14 gi|159040802|ref|YP_001540054.1| - 0.0018 17.7 0.3 0.043 13.3 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family MarR PF01047.17 gi|159040802|ref|YP_001540054.1| - 0.0024 17.5 0.1 0.0056 16.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|159040802|ref|YP_001540054.1| - 0.0045 16.5 0.8 0.3 10.7 0.0 2.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_34 PF13601.1 gi|159040802|ref|YP_001540054.1| - 0.0048 16.9 0.0 0.0091 16.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain RP-C PF03428.8 gi|159040802|ref|YP_001540054.1| - 0.0081 15.6 0.1 0.019 14.4 0.0 1.6 1 1 0 1 1 1 1 Replication protein C N-terminal domain HTH_36 PF13730.1 gi|159040802|ref|YP_001540054.1| - 0.014 15.5 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|159040802|ref|YP_001540054.1| - 0.015 15.6 0.2 0.049 13.9 0.1 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|159040802|ref|YP_001540054.1| - 0.019 14.6 0.4 0.31 10.7 0.0 2.7 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MHC2-interact PF09307.5 gi|159040802|ref|YP_001540054.1| - 0.045 13.5 0.2 0.076 12.8 0.1 1.3 1 0 0 1 1 1 0 CLIP, MHC2 interacting Rrf2 PF02082.15 gi|159040802|ref|YP_001540054.1| - 0.048 13.7 0.3 1.9 8.6 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator GerE PF00196.14 gi|159040802|ref|YP_001540054.1| - 0.1 11.9 1.2 15 4.9 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|159040802|ref|YP_001540054.1| - 0.15 11.7 0.2 0.51 10.0 0.0 2.2 2 1 0 2 2 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|159040802|ref|YP_001540054.1| - 0.26 10.9 1.1 1.1 8.9 0.1 2.4 2 1 0 2 2 2 0 IclR helix-turn-helix domain ATP-synt_ab PF00006.20 gi|159040804|ref|YP_001540056.1| - 2.6e-80 268.9 0.0 3.7e-80 268.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|159040804|ref|YP_001540056.1| - 1.1e-14 54.9 0.0 1.7e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|159040804|ref|YP_001540056.1| - 8.5e-12 45.1 1.1 1.7e-11 44.1 0.8 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_19 PF13245.1 gi|159040804|ref|YP_001540056.1| - 0.021 14.5 0.1 0.38 10.5 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_11 PF13086.1 gi|159040804|ref|YP_001540056.1| - 0.094 12.2 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain vATP-synt_E PF01991.13 gi|159040805|ref|YP_001540057.1| - 2.2e-12 46.6 5.8 3.7e-12 45.9 3.6 1.6 1 1 1 2 2 2 1 ATP synthase (E/31 kDa) subunit NIL PF09383.5 gi|159040805|ref|YP_001540057.1| - 0.024 14.1 0.0 0.063 12.8 0.0 1.8 1 1 0 1 1 1 0 NIL domain ATP-synt_F PF01990.12 gi|159040806|ref|YP_001540058.1| - 9.7e-15 54.7 0.0 1.2e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF1269 PF06897.7 gi|159040807|ref|YP_001540059.1| - 0.099 12.6 0.3 3.1 7.8 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF211 PF02680.9 gi|159040808|ref|YP_001540060.1| - 1.1e-28 98.8 3.0 1.2e-28 98.6 2.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 DUF3794 PF12673.2 gi|159040808|ref|YP_001540060.1| - 0.21 11.7 3.8 0.44 10.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3794) zf-C4H2 PF10146.4 gi|159040809|ref|YP_001540061.1| - 2e-07 31.2 24.7 1.1e-05 25.6 9.8 2.2 1 1 1 2 2 2 2 Zinc finger-containing protein IncA PF04156.9 gi|159040809|ref|YP_001540061.1| - 9.7e-07 28.5 25.0 0.001 18.6 11.3 2.2 1 1 1 2 2 2 2 IncA protein APG6 PF04111.7 gi|159040809|ref|YP_001540061.1| - 0.00012 21.2 30.8 0.0037 16.3 9.2 2.1 1 1 1 2 2 2 2 Autophagy protein Apg6 Reo_sigmaC PF04582.7 gi|159040809|ref|YP_001540061.1| - 0.00017 20.9 0.4 0.027 13.6 0.1 2.1 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|159040809|ref|YP_001540061.1| - 0.00094 19.0 4.6 0.0076 16.0 0.4 2.5 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|159040809|ref|YP_001540061.1| - 0.00097 18.9 7.1 0.5 10.2 0.1 3.7 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) DUF972 PF06156.8 gi|159040809|ref|YP_001540061.1| - 0.0011 19.3 21.8 0.062 13.6 2.5 3.2 1 1 2 3 3 3 1 Protein of unknown function (DUF972) DUF2353 PF09789.4 gi|159040809|ref|YP_001540061.1| - 0.0018 17.5 17.3 0.0026 17.0 10.3 2.0 1 1 1 2 2 2 2 Uncharacterized coiled-coil protein (DUF2353) Lectin_N PF03954.9 gi|159040809|ref|YP_001540061.1| - 0.0035 16.7 3.2 0.41 10.0 0.0 2.9 2 1 0 2 2 2 1 Hepatic lectin, N-terminal domain Lebercilin PF15619.1 gi|159040809|ref|YP_001540061.1| - 0.0046 16.3 24.6 0.0046 16.3 17.0 1.6 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease TMF_DNA_bd PF12329.3 gi|159040809|ref|YP_001540061.1| - 0.0056 16.4 29.7 0.035 13.9 8.0 3.6 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding CCDC155 PF14662.1 gi|159040809|ref|YP_001540061.1| - 0.0062 16.1 26.2 0.032 13.8 17.9 2.0 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 BLOC1_2 PF10046.4 gi|159040809|ref|YP_001540061.1| - 0.0065 16.5 16.9 0.99 9.5 2.9 4.0 1 1 3 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.1 gi|159040809|ref|YP_001540061.1| - 0.0079 15.4 27.6 0.0091 15.2 14.2 2.5 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding MCPsignal PF00015.16 gi|159040809|ref|YP_001540061.1| - 0.0087 15.6 6.1 0.33 10.4 1.1 2.3 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Tweety PF04906.8 gi|159040809|ref|YP_001540061.1| - 0.016 13.6 7.7 0.029 12.7 0.8 2.1 1 1 1 2 2 2 0 Tweety TBPIP PF07106.8 gi|159040809|ref|YP_001540061.1| - 0.017 14.7 26.1 0.77 9.2 9.4 2.8 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|159040809|ref|YP_001540061.1| - 0.05 12.0 21.3 0.22 9.9 6.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF2205 PF10224.4 gi|159040809|ref|YP_001540061.1| - 0.058 12.9 25.9 0.91 9.1 2.5 4.2 1 1 3 4 4 4 0 Predicted coiled-coil protein (DUF2205) DUF1319 PF07028.6 gi|159040809|ref|YP_001540061.1| - 0.07 13.3 23.4 1.3 9.2 1.2 4.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1319) M_domain PF12938.2 gi|159040809|ref|YP_001540061.1| - 0.07 12.9 2.1 0.81 9.4 0.0 2.1 1 1 1 2 2 2 0 M domain of GW182 Peptidase_M61 PF05299.7 gi|159040809|ref|YP_001540061.1| - 0.083 12.8 2.8 1.7 8.6 0.2 2.6 1 1 1 2 2 2 0 M61 glycyl aminopeptidase DASH_Dad3 PF08656.5 gi|159040809|ref|YP_001540061.1| - 0.085 12.5 12.9 1.2 8.9 0.6 3.7 1 1 1 3 3 3 0 DASH complex subunit Dad3 Filament PF00038.16 gi|159040809|ref|YP_001540061.1| - 0.086 12.2 22.5 0.51 9.7 10.1 2.4 1 1 1 2 2 2 0 Intermediate filament protein ADIP PF11559.3 gi|159040809|ref|YP_001540061.1| - 0.1 12.5 22.1 0.52 10.2 6.0 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Seryl_tRNA_N PF02403.17 gi|159040809|ref|YP_001540061.1| - 0.13 12.2 26.3 1.6 8.7 9.4 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain EzrA PF06160.7 gi|159040809|ref|YP_001540061.1| - 0.13 10.3 22.1 0.45 8.6 2.1 3.0 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA MitMem_reg PF13012.1 gi|159040809|ref|YP_001540061.1| - 0.16 12.0 11.4 0.64 10.1 1.2 3.0 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function Cytochrom_C_2 PF01322.15 gi|159040809|ref|YP_001540061.1| - 0.17 12.4 9.9 1.2 9.6 0.3 3.1 1 1 2 3 3 3 0 Cytochrome C' Mod_r PF07200.8 gi|159040809|ref|YP_001540061.1| - 0.17 11.7 22.1 0.16 11.8 5.4 2.5 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein ERM PF00769.14 gi|159040809|ref|YP_001540061.1| - 0.2 11.1 28.9 0.27 10.7 5.0 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF1664 PF07889.7 gi|159040809|ref|YP_001540061.1| - 0.24 11.2 13.7 1.8 8.3 1.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|159040809|ref|YP_001540061.1| - 0.25 8.8 9.5 0.49 7.8 6.6 1.4 1 1 0 1 1 1 0 Prominin PilJ PF13675.1 gi|159040809|ref|YP_001540061.1| - 0.26 11.6 11.4 3 8.1 1.7 3.1 1 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2365 PF10157.4 gi|159040809|ref|YP_001540061.1| - 0.57 10.0 3.4 1.2 9.0 0.3 2.4 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2365) WEMBL PF05701.6 gi|159040809|ref|YP_001540061.1| - 0.64 8.4 26.8 0.52 8.7 9.1 1.9 1 1 1 2 2 2 0 Weak chloroplast movement under blue light Snapin_Pallidin PF14712.1 gi|159040809|ref|YP_001540061.1| - 0.7 10.2 12.6 0.93 9.8 0.9 3.7 1 1 1 2 2 2 0 Snapin/Pallidin AAA_13 PF13166.1 gi|159040809|ref|YP_001540061.1| - 0.81 8.0 21.8 1.9 6.8 15.2 1.4 1 1 0 1 1 1 0 AAA domain DUF4618 PF15397.1 gi|159040809|ref|YP_001540061.1| - 0.83 8.9 20.6 1.5 8.1 0.4 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) Uso1_p115_C PF04871.8 gi|159040809|ref|YP_001540061.1| - 0.88 9.5 23.0 1.4 8.8 3.5 2.4 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region SmpB PF01668.13 gi|159040809|ref|YP_001540061.1| - 0.93 9.3 9.2 35 4.2 0.0 5.4 1 1 5 6 6 6 0 SmpB protein FliD_C PF07195.7 gi|159040809|ref|YP_001540061.1| - 1 8.6 8.3 5.5 6.2 0.0 3.0 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 C-terminus DUF3391 PF11871.3 gi|159040809|ref|YP_001540061.1| - 1 9.5 8.2 3.5 7.8 0.1 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Cauli_AT PF03233.8 gi|159040809|ref|YP_001540061.1| - 1.1 8.9 14.6 3 7.5 3.5 2.5 1 1 1 2 2 2 0 Aphid transmission protein DUF1759 PF03564.10 gi|159040809|ref|YP_001540061.1| - 1.2 8.9 13.2 7.5 6.3 0.7 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1759) Phage_lysis PF03245.8 gi|159040809|ref|YP_001540061.1| - 1.3 9.0 15.9 1.4 8.9 1.1 3.6 2 1 1 3 3 3 0 Bacteriophage Rz lysis protein LOH1CR12 PF10158.4 gi|159040809|ref|YP_001540061.1| - 1.3 8.7 6.9 27 4.5 0.1 3.4 1 1 3 4 4 4 0 Tumour suppressor protein DUF2422 PF10337.4 gi|159040809|ref|YP_001540061.1| - 1.5 7.5 4.2 26 3.4 2.6 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) Laminin_II PF06009.7 gi|159040809|ref|YP_001540061.1| - 2 8.1 14.8 2.9 7.6 5.2 2.5 1 1 1 2 2 2 0 Laminin Domain II EMP24_GP25L PF01105.19 gi|159040809|ref|YP_001540061.1| - 2.1 8.0 14.5 4.9e+02 0.3 8.9 3.4 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD TPR_MLP1_2 PF07926.7 gi|159040809|ref|YP_001540061.1| - 2.2 8.0 29.0 1.8 8.2 6.4 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein RasGAP_C PF03836.10 gi|159040809|ref|YP_001540061.1| - 2.2 7.9 14.1 3.6 7.2 2.5 2.9 1 1 1 2 2 2 0 RasGAP C-terminus DUF632 PF04782.7 gi|159040809|ref|YP_001540061.1| - 2.2 7.2 23.0 16 4.4 13.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF632) HALZ PF02183.13 gi|159040809|ref|YP_001540061.1| - 2.2 8.0 13.7 3 7.6 0.5 4.5 3 3 3 6 6 5 0 Homeobox associated leucine zipper FlxA PF14282.1 gi|159040809|ref|YP_001540061.1| - 2.3 8.1 11.5 28 4.7 0.2 3.2 1 1 1 2 2 2 0 FlxA-like protein Sec34 PF04136.10 gi|159040809|ref|YP_001540061.1| - 2.7 7.6 9.1 23 4.6 3.1 2.8 1 1 1 2 2 2 0 Sec34-like family Phage_GP20 PF06810.6 gi|159040809|ref|YP_001540061.1| - 3 7.2 22.9 0.81 9.1 0.9 2.8 1 1 1 2 2 2 0 Phage minor structural protein GP20 Transposase_22 PF02994.9 gi|159040809|ref|YP_001540061.1| - 3.2 6.1 24.9 0.4 9.1 4.9 2.2 1 1 1 2 2 2 0 L1 transposable element Pox_F11 PF04943.7 gi|159040809|ref|YP_001540061.1| - 3.6 6.3 6.9 5.6 5.7 0.6 2.1 1 1 1 2 2 2 0 Poxvirus F11 protein TMPIT PF07851.8 gi|159040809|ref|YP_001540061.1| - 4.6 6.2 16.3 0.41 9.6 1.6 2.2 1 1 2 3 3 3 0 TMPIT-like protein DUF2968 PF11180.3 gi|159040809|ref|YP_001540061.1| - 4.8 6.5 12.9 4.2 6.7 2.2 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) GlnE PF03710.10 gi|159040809|ref|YP_001540061.1| - 5.2 6.2 10.5 0.77 8.9 0.0 2.9 1 1 1 2 2 1 0 Glutamate-ammonia ligase adenylyltransferase UPF0242 PF06785.6 gi|159040809|ref|YP_001540061.1| - 5.3 5.6 14.9 8.4 4.9 10.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Ax_dynein_light PF10211.4 gi|159040809|ref|YP_001540061.1| - 5.3 6.8 25.6 1.5 8.6 7.6 2.9 1 1 2 3 3 3 0 Axonemal dynein light chain TSC22 PF01166.13 gi|159040809|ref|YP_001540061.1| - 7.5 6.6 21.6 3.9 7.5 0.4 3.6 1 1 2 3 3 3 0 TSC-22/dip/bun family DivIC PF04977.10 gi|159040809|ref|YP_001540061.1| - 7.5 6.1 27.2 14 5.2 0.9 4.5 1 1 3 4 4 4 0 Septum formation initiator Fib_alpha PF08702.5 gi|159040809|ref|YP_001540061.1| - 8.4 6.5 15.4 31 4.6 2.2 2.8 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF904 PF06005.7 gi|159040809|ref|YP_001540061.1| - 8.6 6.7 37.4 0.85 9.9 5.8 3.7 1 1 1 2 2 1 0 Protein of unknown function (DUF904) DNA_pol_alpha_N PF12254.3 gi|159040809|ref|YP_001540061.1| - 9.3 6.1 14.1 8.7 6.2 1.0 3.9 1 1 4 5 5 5 0 DNA polymerase alpha subunit p180 N terminal Sugar_tr PF00083.19 gi|159040810|ref|YP_001540062.1| - 2.1e-15 56.2 16.0 2.1e-15 56.2 11.1 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|159040810|ref|YP_001540062.1| - 9.2e-14 50.9 59.5 9.2e-14 50.9 41.2 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily QRPTase_C PF01729.14 gi|159040811|ref|YP_001540063.1| - 1.7e-52 177.3 4.7 2.1e-52 177.0 3.3 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|159040811|ref|YP_001540063.1| - 2.8e-21 75.1 0.0 5.5e-21 74.1 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain FMN_dh PF01070.13 gi|159040811|ref|YP_001540063.1| - 0.015 14.1 0.1 0.022 13.6 0.1 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Pox_VP8_L4R PF04498.7 gi|159040812|ref|YP_001540064.1| - 0.11 11.7 0.2 0.14 11.4 0.2 1.1 1 0 0 1 1 1 0 Poxvirus nucleic acid binding protein VP8/L4R HTH_10 PF04967.7 gi|159040813|ref|YP_001540065.1| - 5.9e-19 67.3 0.6 1.1e-18 66.4 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_17 PF12728.2 gi|159040813|ref|YP_001540065.1| - 0.015 15.5 0.0 0.035 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_AlpA PF05930.7 gi|159040813|ref|YP_001540065.1| - 0.019 14.6 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_11 PF08279.7 gi|159040813|ref|YP_001540065.1| - 0.029 14.0 0.1 0.072 12.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.6 gi|159040813|ref|YP_001540065.1| - 0.032 14.0 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain RHH_1 PF01402.16 gi|159040813|ref|YP_001540065.1| - 0.05 13.5 0.6 0.2 11.6 0.4 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family HTH_22 PF13309.1 gi|159040813|ref|YP_001540065.1| - 0.052 13.3 0.1 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_3 PF01381.17 gi|159040813|ref|YP_001540065.1| - 0.077 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix GerE PF00196.14 gi|159040813|ref|YP_001540065.1| - 0.09 12.1 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family AhpC-TSA PF00578.16 gi|159040814|ref|YP_001540066.1| - 6.8e-41 138.8 0.0 7.9e-41 138.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|159040814|ref|YP_001540066.1| - 1.8e-30 105.4 0.0 2e-30 105.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|159040814|ref|YP_001540066.1| - 0.00072 19.4 0.0 0.00092 19.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme GSHPx PF00255.14 gi|159040814|ref|YP_001540066.1| - 0.00087 18.6 0.0 0.0037 16.6 0.0 1.8 1 1 0 1 1 1 1 Glutathione peroxidase DUF899 PF05988.7 gi|159040814|ref|YP_001540066.1| - 0.0027 17.1 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.9 gi|159040814|ref|YP_001540066.1| - 0.015 14.9 0.0 0.16 11.5 0.0 2.2 1 1 1 2 2 2 0 SCO1/SenC DUF3801 PF12687.2 gi|159040814|ref|YP_001540066.1| - 0.074 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) Fucose_iso_C PF02952.12 gi|159040815|ref|YP_001540067.1| - 0.0084 15.6 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Glyco_hydro_28 PF00295.12 gi|159040816|ref|YP_001540068.1| - 3.7e-43 147.7 3.6 4e-39 134.4 2.7 2.4 2 0 0 2 2 2 2 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.2 gi|159040816|ref|YP_001540068.1| - 7.6e-25 88.3 5.0 1.3e-17 64.6 1.0 3.5 2 1 0 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|159040816|ref|YP_001540068.1| - 2.6e-08 33.7 13.1 0.00012 21.9 2.8 2.7 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.8 gi|159040816|ref|YP_001540068.1| - 0.00077 18.6 7.5 0.28 10.3 0.3 3.4 3 1 0 3 3 3 2 Periplasmic copper-binding protein (NosD) FMN_dh PF01070.13 gi|159040817|ref|YP_001540069.1| - 1.4e-35 122.8 0.8 1.4e-24 86.5 0.5 2.0 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|159040817|ref|YP_001540069.1| - 6.8e-06 25.2 0.4 6.8e-06 25.2 0.3 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.20 gi|159040817|ref|YP_001540069.1| - 0.00013 21.0 1.0 0.0024 16.7 0.8 2.3 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain SBP_bac_5 PF00496.17 gi|159040818|ref|YP_001540070.1| - 4.7e-28 98.0 5.3 7.9e-28 97.3 3.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159040818|ref|YP_001540070.1| - 0.086 12.4 9.4 0.15 11.6 6.5 1.3 1 0 0 1 1 1 0 Rifin/stevor family TAT_signal PF10518.4 gi|159040819|ref|YP_001540071.1| - 0.011 15.7 1.9 0.026 14.5 1.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2961 PF11175.3 gi|159040820|ref|YP_001540072.1| - 5.1e-74 248.5 0.8 6.8e-74 248.1 0.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2961) Sulfatase PF00884.18 gi|159040823|ref|YP_001540075.1| - 2.4e-47 161.6 0.0 3e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|159040823|ref|YP_001540075.1| - 5.4e-11 42.4 0.5 9.8e-06 25.1 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|159040823|ref|YP_001540075.1| - 0.00049 18.6 0.0 0.00072 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|159040823|ref|YP_001540075.1| - 0.01 15.2 0.1 0.15 11.4 0.0 2.2 1 1 0 1 1 1 0 Metalloenzyme superfamily DUF1501 PF07394.7 gi|159040823|ref|YP_001540075.1| - 0.11 11.3 0.0 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF91 PF01939.11 gi|159040826|ref|YP_001540078.1| - 4.6e-60 202.6 0.0 5.9e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 UPF0102 PF02021.12 gi|159040826|ref|YP_001540078.1| - 0.0013 18.6 0.0 0.0049 16.7 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 PDDEXK_4 PF14281.1 gi|159040826|ref|YP_001540078.1| - 0.0037 17.1 0.0 0.0049 16.7 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|159040826|ref|YP_001540078.1| - 0.0091 15.9 0.0 0.04 13.8 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF83 DUF1703 PF08011.6 gi|159040826|ref|YP_001540078.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) HSDR_N PF04313.9 gi|159040826|ref|YP_001540078.1| - 0.022 14.4 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_1 PF12705.2 gi|159040826|ref|YP_001540078.1| - 0.063 12.6 0.0 0.074 12.4 0.0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily SGL PF08450.7 gi|159040827|ref|YP_001540079.1| - 4.7e-74 248.8 0.0 5.5e-74 248.6 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Glyoxal_oxid_N PF07250.6 gi|159040827|ref|YP_001540079.1| - 0.051 12.6 0.0 0.084 11.9 0.0 1.3 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus Reg_prop PF07494.6 gi|159040827|ref|YP_001540079.1| - 0.068 13.2 0.4 4.5 7.6 0.0 3.9 4 0 0 4 4 4 0 Two component regulator propeller Str_synth PF03088.11 gi|159040827|ref|YP_001540079.1| - 0.083 12.9 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Strictosidine synthase NHL PF01436.16 gi|159040827|ref|YP_001540079.1| - 0.3 11.1 1.9 44 4.2 0.0 4.3 5 0 0 5 5 5 0 NHL repeat DNA_RNApol_7kD PF03604.8 gi|159040828|ref|YP_001540080.1| - 0.0003 20.2 4.8 0.0039 16.6 3.3 2.1 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-C2HC_2 PF13913.1 gi|159040828|ref|YP_001540080.1| - 0.0007 19.1 3.1 0.18 11.5 0.1 2.2 2 0 0 2 2 2 2 zinc-finger of a C2HC-type Ribosomal_S27e PF01667.12 gi|159040828|ref|YP_001540080.1| - 0.0047 16.4 0.7 0.57 9.7 0.0 2.2 1 1 1 2 2 2 1 Ribosomal protein S27 zf-H2C2_2 PF13465.1 gi|159040828|ref|YP_001540080.1| - 0.0048 17.1 0.4 2.1 8.7 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zf-C2H2 PF00096.21 gi|159040828|ref|YP_001540080.1| - 0.005 17.1 0.8 1.3 9.5 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|159040828|ref|YP_001540080.1| - 0.0056 15.8 1.0 0.14 11.4 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159040828|ref|YP_001540080.1| - 0.007 15.8 1.1 0.25 10.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF164 PF02591.10 gi|159040828|ref|YP_001540080.1| - 0.012 15.4 0.3 4.2 7.2 0.0 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|159040828|ref|YP_001540080.1| - 0.012 15.3 0.6 2.1 8.2 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|159040828|ref|YP_001540080.1| - 0.014 15.3 0.7 0.039 13.8 0.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|159040828|ref|YP_001540080.1| - 0.015 15.1 0.3 0.072 12.9 0.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|159040828|ref|YP_001540080.1| - 0.024 14.3 1.0 0.1 12.3 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.1 gi|159040828|ref|YP_001540080.1| - 0.049 13.4 0.9 0.068 12.9 0.0 1.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG A2L_zn_ribbon PF08792.5 gi|159040828|ref|YP_001540080.1| - 0.057 12.8 0.6 3.2 7.3 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C3HC4_2 PF13923.1 gi|159040828|ref|YP_001540080.1| - 0.061 13.3 0.4 0.087 12.8 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|159040828|ref|YP_001540080.1| - 0.075 13.0 0.1 6 6.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger CpXC PF14353.1 gi|159040828|ref|YP_001540080.1| - 0.077 12.9 0.5 0.47 10.4 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Elf1 PF05129.8 gi|159040828|ref|YP_001540080.1| - 0.079 12.6 0.4 0.47 10.1 0.0 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-C3HC4_3 PF13920.1 gi|159040828|ref|YP_001540080.1| - 0.097 12.3 0.2 0.14 11.8 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TFIIS_C PF01096.13 gi|159040828|ref|YP_001540080.1| - 0.11 12.1 0.5 5.2 6.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|159040828|ref|YP_001540080.1| - 0.22 11.2 0.8 4.2 7.0 0.0 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Sgf11 PF08209.6 gi|159040828|ref|YP_001540080.1| - 0.26 10.6 1.3 7.4 5.9 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) PyrI_C PF02748.10 gi|159040828|ref|YP_001540080.1| - 0.34 10.3 1.8 1.4 8.3 0.1 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain TF_Zn_Ribbon PF08271.7 gi|159040828|ref|YP_001540080.1| - 2.7 7.3 8.3 2.5 7.4 2.1 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2791 PF10923.3 gi|159040829|ref|YP_001540081.1| - 0.0022 16.6 0.1 0.0029 16.2 0.0 1.1 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.1 gi|159040829|ref|YP_001540081.1| - 0.0058 16.6 0.0 0.0074 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|159040829|ref|YP_001540081.1| - 0.0083 15.7 0.1 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 OCD_Mu_crystall PF02423.10 gi|159040830|ref|YP_001540082.1| - 4.8e-42 143.8 0.0 5.7e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|159040830|ref|YP_001540082.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|159040830|ref|YP_001540082.1| - 0.034 14.5 0.0 0.058 13.8 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF328 PF03883.9 gi|159040831|ref|YP_001540083.1| - 0.012 14.9 0.1 0.013 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF328) ThiS PF02597.15 gi|159040832|ref|YP_001540084.1| - 3.5e-15 56.1 0.0 4.1e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|159040832|ref|YP_001540084.1| - 8.3e-06 25.8 0.1 9.1e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.16 gi|159040832|ref|YP_001540084.1| - 0.067 13.0 0.3 0.22 11.4 0.1 1.7 2 0 0 2 2 2 0 TGS domain Phosphodiest PF01663.17 gi|159040833|ref|YP_001540085.1| - 1.4e-27 97.0 0.2 1.3e-25 90.5 0.1 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|159040833|ref|YP_001540085.1| - 6.3e-08 32.4 0.0 1.2e-05 25.0 0.0 2.3 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.13 gi|159040833|ref|YP_001540085.1| - 0.001 18.5 0.0 0.014 14.7 0.0 2.3 2 0 0 2 2 2 1 Metalloenzyme superfamily DUF59 PF01883.14 gi|159040834|ref|YP_001540086.1| - 2e-14 53.3 0.1 3.7e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF59 Pyr_redox_dim PF02852.17 gi|159040835|ref|YP_001540087.1| - 1.6e-29 102.1 0.2 3.1e-29 101.2 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|159040835|ref|YP_001540087.1| - 6.6e-25 88.1 9.4 7.4e-14 52.1 0.0 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159040835|ref|YP_001540087.1| - 9.4e-22 77.2 6.6 1.5e-20 73.3 0.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159040835|ref|YP_001540087.1| - 2.7e-13 49.5 0.2 5.8e-07 28.7 0.0 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|159040835|ref|YP_001540087.1| - 9.8e-11 42.0 0.0 9.2e-09 35.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|159040835|ref|YP_001540087.1| - 5.5e-09 34.9 6.0 0.00078 18.0 0.2 4.2 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.19 gi|159040835|ref|YP_001540087.1| - 1.7e-08 33.7 18.0 0.013 14.4 3.1 3.9 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|159040835|ref|YP_001540087.1| - 8.5e-07 28.3 3.4 9.1e-05 21.7 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|159040835|ref|YP_001540087.1| - 1.2e-06 27.7 12.5 2.5e-05 23.2 0.5 3.3 2 1 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|159040835|ref|YP_001540087.1| - 7.3e-06 25.2 2.5 0.019 14.0 0.1 2.6 2 0 0 2 2 2 2 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|159040835|ref|YP_001540087.1| - 0.00041 19.7 0.4 0.00041 19.7 0.3 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|159040835|ref|YP_001540087.1| - 0.00049 19.2 10.5 0.056 12.4 2.4 2.4 2 1 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.16 gi|159040835|ref|YP_001540087.1| - 0.0014 18.2 0.5 0.0048 16.4 0.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|159040835|ref|YP_001540087.1| - 0.0039 17.1 9.3 0.038 14.0 2.4 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|159040835|ref|YP_001540087.1| - 0.012 14.5 4.3 0.84 8.4 0.1 2.9 3 1 0 4 4 4 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|159040835|ref|YP_001540087.1| - 0.062 13.5 0.3 7.1 6.9 0.1 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|159040835|ref|YP_001540087.1| - 0.24 11.0 6.4 0.11 12.0 0.3 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|159040835|ref|YP_001540087.1| - 0.96 9.4 6.5 5.5 7.0 0.2 3.2 3 0 0 3 3 3 0 TrkA-N domain DUF89 PF01937.14 gi|159040836|ref|YP_001540088.1| - 2.3e-19 69.4 0.2 1.5e-18 66.7 0.2 2.2 1 1 0 1 1 1 1 Protein of unknown function DUF89 GATase_3 PF07685.9 gi|159040837|ref|YP_001540089.1| - 3.2e-30 104.8 0.0 4.7e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|159040837|ref|YP_001540089.1| - 1.4e-11 44.1 0.0 3.2e-11 43.0 0.0 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|159040837|ref|YP_001540089.1| - 4.5e-08 32.9 0.0 1.7e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|159040837|ref|YP_001540089.1| - 0.0054 16.2 0.0 0.0082 15.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|159040837|ref|YP_001540089.1| - 0.051 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Amidohydro_1 PF01979.15 gi|159040838|ref|YP_001540090.1| - 1.4e-39 136.7 0.0 3.1e-39 135.5 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|159040838|ref|YP_001540090.1| - 2.5e-13 50.0 0.0 1.2e-10 41.2 0.0 3.0 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|159040838|ref|YP_001540090.1| - 3e-09 37.3 0.2 1.3e-05 25.4 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|159040838|ref|YP_001540090.1| - 3.1e-08 33.2 0.4 7.5e-08 32.0 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase ABC_tran PF00005.22 gi|159040839|ref|YP_001540091.1| - 2.8e-09 37.3 0.0 3.1e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159040839|ref|YP_001540091.1| - 2e-07 31.2 0.0 2.2e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|159040839|ref|YP_001540091.1| - 2.5e-07 31.2 0.0 2.5e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159040839|ref|YP_001540091.1| - 0.00011 21.5 0.1 0.00013 21.3 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|159040839|ref|YP_001540091.1| - 0.00012 21.5 0.1 0.00017 21.0 0.1 1.2 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|159040839|ref|YP_001540091.1| - 0.00016 20.4 0.1 0.00017 20.3 0.1 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|159040839|ref|YP_001540091.1| - 0.00034 20.2 0.2 0.00043 19.9 0.1 1.2 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|159040839|ref|YP_001540091.1| - 0.00046 20.2 0.0 0.00046 20.2 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|159040839|ref|YP_001540091.1| - 0.00048 19.1 0.0 0.00048 19.1 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|159040839|ref|YP_001540091.1| - 0.00097 18.7 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|159040839|ref|YP_001540091.1| - 0.0018 18.0 0.0 0.0019 17.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_15 PF13175.1 gi|159040839|ref|YP_001540091.1| - 0.0026 16.9 0.1 0.0026 16.9 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|159040839|ref|YP_001540091.1| - 0.0028 17.8 0.0 0.003 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|159040839|ref|YP_001540091.1| - 0.005 16.5 0.0 0.0074 15.9 0.0 1.2 1 0 0 1 1 1 1 NACHT domain DUF258 PF03193.11 gi|159040839|ref|YP_001540091.1| - 0.01 15.0 0.1 0.015 14.4 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|159040839|ref|YP_001540091.1| - 0.011 15.9 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|159040839|ref|YP_001540091.1| - 0.013 16.3 0.0 0.015 16.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|159040839|ref|YP_001540091.1| - 0.015 14.2 0.0 0.019 13.9 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase ATP_bind_1 PF03029.12 gi|159040839|ref|YP_001540091.1| - 0.017 14.6 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|159040839|ref|YP_001540091.1| - 0.02 14.3 0.1 0.024 14.0 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|159040839|ref|YP_001540091.1| - 0.021 13.9 0.0 0.024 13.7 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.16 gi|159040839|ref|YP_001540091.1| - 0.021 13.9 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|159040839|ref|YP_001540091.1| - 0.025 13.0 0.0 0.025 13.0 0.0 1.0 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|159040839|ref|YP_001540091.1| - 0.027 13.9 0.1 0.036 13.5 0.1 1.1 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|159040839|ref|YP_001540091.1| - 0.03 14.0 0.1 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|159040839|ref|YP_001540091.1| - 0.033 13.6 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|159040839|ref|YP_001540091.1| - 0.037 13.8 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|159040839|ref|YP_001540091.1| - 0.041 13.8 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|159040839|ref|YP_001540091.1| - 0.046 14.0 0.0 0.056 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|159040839|ref|YP_001540091.1| - 0.048 13.2 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|159040839|ref|YP_001540091.1| - 0.049 13.5 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|159040839|ref|YP_001540091.1| - 0.061 13.0 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 NTPase DUF3584 PF12128.3 gi|159040839|ref|YP_001540091.1| - 0.086 10.1 0.2 0.11 9.8 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_25 PF13481.1 gi|159040839|ref|YP_001540091.1| - 0.096 12.0 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|159040839|ref|YP_001540091.1| - 0.097 11.3 0.1 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein PduV-EutP PF10662.4 gi|159040839|ref|YP_001540091.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|159040839|ref|YP_001540091.1| - 0.13 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF1614 PF07758.6 gi|159040840|ref|YP_001540092.1| - 1.8e-48 164.5 20.0 1.8e-48 164.5 13.8 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) Amidohydro_4 PF13147.1 gi|159040841|ref|YP_001540093.1| - 5e-16 59.5 0.4 5e-15 56.2 0.3 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|159040841|ref|YP_001540093.1| - 3.4e-15 56.5 0.6 1.1e-14 54.8 0.4 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|159040841|ref|YP_001540093.1| - 7e-08 32.0 0.0 0.00017 20.9 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|159040841|ref|YP_001540093.1| - 1.3e-06 28.1 0.0 2.6e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase AMP-binding PF00501.23 gi|159040842|ref|YP_001540094.1| - 1.7e-91 306.6 0.0 2.1e-91 306.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|159040842|ref|YP_001540094.1| - 5.3e-25 88.1 0.7 1.3e-24 86.8 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Hydrolase_3 PF08282.7 gi|159040843|ref|YP_001540095.1| - 6.2e-24 84.9 0.5 4.8e-20 72.1 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|159040843|ref|YP_001540095.1| - 4.4e-06 27.2 0.0 8.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|159040843|ref|YP_001540095.1| - 4.2e-05 22.9 0.0 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|159040843|ref|YP_001540095.1| - 5.4e-05 23.4 0.0 7.6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|159040843|ref|YP_001540095.1| - 0.00098 18.0 0.0 0.76 8.6 0.0 2.1 1 1 1 2 2 2 2 Trehalose-phosphatase Fcf1 PF04900.7 gi|159040844|ref|YP_001540096.1| - 2.2e-05 24.4 0.0 4.3e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Fcf1 UPF0278 PF08745.6 gi|159040844|ref|YP_001540096.1| - 0.0032 16.7 0.1 0.013 14.8 0.0 1.8 2 0 0 2 2 2 1 UPF0278 family PIN_4 PF13638.1 gi|159040844|ref|YP_001540096.1| - 0.0084 16.2 0.1 2.8 8.0 0.0 2.2 1 1 1 2 2 2 2 PIN domain PIN PF01850.16 gi|159040844|ref|YP_001540096.1| - 0.011 16.1 0.9 0.34 11.2 0.7 2.1 1 1 0 1 1 1 0 PIN domain Mut7-C PF01927.11 gi|159040844|ref|YP_001540096.1| - 0.025 14.5 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain FAA_hydrolase PF01557.13 gi|159040845|ref|YP_001540097.1| - 3.1e-32 111.7 0.0 4.2e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family AFOR_C PF01314.13 gi|159040846|ref|YP_001540098.1| - 9.5e-106 353.6 0.0 1.2e-105 353.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|159040846|ref|YP_001540098.1| - 4.8e-68 228.4 0.0 9.4e-68 227.5 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain GHMP_kinases_N PF00288.21 gi|159040847|ref|YP_001540099.1| - 4.8e-16 58.5 1.9 1.1e-15 57.4 1.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|159040847|ref|YP_001540099.1| - 7.4e-08 32.4 0.0 2.1e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal WIYLD PF10440.4 gi|159040847|ref|YP_001540099.1| - 0.018 14.9 0.0 0.043 13.7 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain Thioredoxin_3 PF13192.1 gi|159040848|ref|YP_001540100.1| - 3.8e-09 36.2 0.0 1e-08 34.8 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|159040848|ref|YP_001540100.1| - 3.3e-07 30.1 0.0 8.7e-07 28.8 0.0 1.8 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|159040848|ref|YP_001540100.1| - 0.012 15.6 0.3 0.13 12.2 0.0 2.4 2 1 0 3 3 3 0 Thioredoxin AFOR_N PF02730.10 gi|159040849|ref|YP_001540101.1| - 3.5e-34 117.9 0.2 5.8e-34 117.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|159040849|ref|YP_001540101.1| - 2.4e-16 59.3 0.0 4.6e-15 55.1 0.0 2.6 2 1 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 eRF1_2 PF03464.10 gi|159040850|ref|YP_001540102.1| - 1.4e-29 103.0 0.0 2.4e-29 102.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|159040850|ref|YP_001540102.1| - 2.4e-19 69.2 0.0 4.1e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|159040850|ref|YP_001540102.1| - 1.5e-08 34.8 0.7 1.4e-07 31.7 0.5 2.5 1 1 0 1 1 1 1 eRF1 domain 3 Ribosomal_L7Ae PF01248.21 gi|159040850|ref|YP_001540102.1| - 2.1e-06 27.1 0.1 4.6e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF763 PF05559.6 gi|159040851|ref|YP_001540103.1| - 2.1e-118 394.9 0.0 2.5e-118 394.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Fucose_iso_C PF02952.12 gi|159040853|ref|YP_001540105.1| - 8.3e-11 41.5 0.1 1.3e-10 40.9 0.1 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Methyltrn_RNA_3 PF02598.12 gi|159040854|ref|YP_001540106.1| - 4.5e-45 154.2 0.0 5.2e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SPOUT_MTase_2 PF14419.1 gi|159040854|ref|YP_001540106.1| - 0.0027 16.9 0.4 0.71 9.0 0.1 2.2 2 0 0 2 2 2 2 AF2226-like SPOUT RNA Methylase fused to THUMP FAD-oxidase_C PF02913.14 gi|159040855|ref|YP_001540107.1| - 6.5e-56 189.4 0.0 9.1e-56 188.9 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|159040855|ref|YP_001540107.1| - 9.1e-40 135.3 0.1 1.6e-39 134.5 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|159040856|ref|YP_001540108.1| - 2.6e-11 43.3 2.9 3.8e-11 42.8 2.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159040856|ref|YP_001540108.1| - 6.5e-11 42.4 4.0 4.2e-05 23.8 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159040856|ref|YP_001540108.1| - 2.5e-09 37.3 2.1 3.5e-09 36.8 1.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159040856|ref|YP_001540108.1| - 5.7e-08 32.2 9.4 0.0012 18.6 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|159040856|ref|YP_001540108.1| - 6.7e-08 32.6 2.9 0.003 17.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159040856|ref|YP_001540108.1| - 2e-07 30.6 7.6 1.1e-05 25.1 6.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159040856|ref|YP_001540108.1| - 2.1e-07 31.1 6.5 5.8e-07 29.8 4.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159040856|ref|YP_001540108.1| - 1e-06 28.5 5.1 0.01 15.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159040856|ref|YP_001540108.1| - 1.2e-05 24.6 12.0 0.0044 16.5 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|159040856|ref|YP_001540108.1| - 4.9e-05 23.3 11.7 0.0077 16.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159040856|ref|YP_001540108.1| - 0.00037 20.2 12.6 0.0091 15.8 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|159040856|ref|YP_001540108.1| - 0.0014 18.2 2.7 0.3 10.7 0.0 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|159040856|ref|YP_001540108.1| - 0.0023 18.6 8.8 0.016 15.9 6.3 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|159040856|ref|YP_001540108.1| - 0.0042 17.6 5.0 0.99 10.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|159040856|ref|YP_001540108.1| - 0.0094 16.4 16.4 0.25 12.0 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|159040856|ref|YP_001540108.1| - 0.21 11.9 8.4 2.3 8.6 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.9 gi|159040857|ref|YP_001540109.1| - 7.8e-05 22.1 11.5 0.0065 15.8 1.9 2.1 1 1 1 2 2 2 2 Nitrate reductase gamma subunit DUF4117 PF13491.1 gi|159040857|ref|YP_001540109.1| - 0.0085 15.5 11.2 0.0085 15.5 7.8 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4117) APS-reductase_C PF12139.3 gi|159040858|ref|YP_001540110.1| - 2.6e-29 101.1 0.0 3.6e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.2 gi|159040858|ref|YP_001540110.1| - 1.9e-12 47.3 10.6 3.3e-12 46.5 7.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159040858|ref|YP_001540110.1| - 7.5e-12 44.3 13.1 4.3e-06 26.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|159040858|ref|YP_001540110.1| - 3.7e-10 39.9 10.4 7.1e-10 39.0 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159040858|ref|YP_001540110.1| - 9.3e-09 34.7 13.4 7.1e-06 25.6 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159040858|ref|YP_001540110.1| - 2.8e-08 33.4 11.6 7e-08 32.1 8.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|159040858|ref|YP_001540110.1| - 8.6e-08 32.1 9.5 1.7e-07 31.1 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159040858|ref|YP_001540110.1| - 5.7e-07 30.1 3.6 0.011 16.4 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|159040858|ref|YP_001540110.1| - 3.8e-06 26.5 14.4 0.002 17.9 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|159040858|ref|YP_001540110.1| - 2.2e-05 24.4 14.0 0.00031 20.8 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|159040858|ref|YP_001540110.1| - 3.5e-05 24.0 17.8 0.022 15.3 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|159040858|ref|YP_001540110.1| - 0.00016 22.1 3.6 0.013 16.0 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|159040858|ref|YP_001540110.1| - 0.00022 21.5 12.8 0.0048 17.2 8.9 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159040858|ref|YP_001540110.1| - 0.00026 20.8 13.1 0.055 13.3 1.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159040858|ref|YP_001540110.1| - 0.00047 20.5 12.2 0.026 14.9 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159040858|ref|YP_001540110.1| - 0.013 15.8 9.7 0.12 12.7 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|159040858|ref|YP_001540110.1| - 0.068 13.0 5.7 1.1 9.2 4.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|159040859|ref|YP_001540111.1| - 1.3e-14 53.9 0.4 1.9e-13 50.0 0.0 2.4 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|159040859|ref|YP_001540111.1| - 1.2e-09 38.1 0.1 2.3e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|159040859|ref|YP_001540111.1| - 4e-05 22.6 4.3 8.6e-05 21.5 0.5 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|159040859|ref|YP_001540111.1| - 0.0079 16.2 0.4 0.054 13.5 0.3 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|159040859|ref|YP_001540111.1| - 0.012 15.5 2.9 0.17 11.7 1.5 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159040859|ref|YP_001540111.1| - 0.013 14.4 1.0 0.044 12.6 0.4 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|159040859|ref|YP_001540111.1| - 0.02 13.9 0.1 0.028 13.5 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|159040859|ref|YP_001540111.1| - 0.27 9.6 0.3 0.93 7.8 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein ATP-sulfurylase PF01747.12 gi|159040860|ref|YP_001540112.1| - 9.5e-80 266.9 0.0 1.3e-79 266.5 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|159040860|ref|YP_001540112.1| - 1.1e-40 138.6 0.0 1.6e-40 138.1 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain Malectin_like PF12819.2 gi|159040860|ref|YP_001540112.1| - 0.18 10.8 0.0 0.27 10.2 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate-binding protein of the ER CTP_transf_2 PF01467.21 gi|159040862|ref|YP_001540114.1| - 6.8e-12 45.7 0.0 1e-11 45.1 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase Glyoxalase_4 PF13669.1 gi|159040863|ref|YP_001540115.1| - 2.1e-24 85.6 0.0 2.5e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|159040863|ref|YP_001540115.1| - 5.3e-06 27.0 0.0 2.7e-05 24.7 0.0 1.9 1 1 1 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|159040863|ref|YP_001540115.1| - 0.00017 21.5 0.0 0.00026 20.9 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_5 PF14696.1 gi|159040863|ref|YP_001540115.1| - 0.001 18.9 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Fucose_iso_C PF02952.12 gi|159040863|ref|YP_001540115.1| - 0.019 14.4 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 L-fucose isomerase, C-terminal domain Ponericin PF07442.6 gi|159040863|ref|YP_001540115.1| - 0.069 12.9 0.5 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Ponericin Glyoxalase_3 PF13468.1 gi|159040863|ref|YP_001540115.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.7 1 1 1 2 2 2 0 Glyoxalase-like domain Peptidase_M1 PF01433.15 gi|159040864|ref|YP_001540116.1| - 9.6e-60 202.7 0.0 1.5e-59 202.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|159040864|ref|YP_001540116.1| - 4.7e-30 103.7 4.6 4.4e-13 49.3 0.0 3.5 1 1 2 3 3 3 3 HEAT repeats Peptidase_MA_2 PF13485.1 gi|159040864|ref|YP_001540116.1| - 1.8e-15 57.1 0.4 4.9e-15 55.7 0.3 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily HEAT_PBS PF03130.11 gi|159040864|ref|YP_001540116.1| - 8.6e-15 53.6 15.4 0.00054 20.1 0.1 6.5 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|159040864|ref|YP_001540116.1| - 2.1e-12 45.9 1.4 0.054 13.5 0.0 5.7 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|159040864|ref|YP_001540116.1| - 2.2e-08 34.3 5.1 0.00024 21.4 0.1 4.6 3 1 1 4 4 4 3 HEAT-like repeat Arm PF00514.18 gi|159040864|ref|YP_001540116.1| - 0.015 15.0 1.5 0.19 11.5 0.0 3.4 4 1 1 5 5 5 0 Armadillo/beta-catenin-like repeat DUF1546 PF07571.8 gi|159040864|ref|YP_001540116.1| - 0.18 11.9 0.3 3.9 7.6 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1546) Sua5_yciO_yrdC PF01300.13 gi|159040867|ref|YP_001540119.1| - 5.9e-54 182.0 0.0 9.9e-54 181.2 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|159040867|ref|YP_001540119.1| - 1.2e-29 102.9 0.0 1.8e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Aminotran_3 PF00202.16 gi|159040870|ref|YP_001540122.1| - 4.8e-61 206.4 0.0 6.6e-61 206.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|159040870|ref|YP_001540122.1| - 0.005 15.8 0.0 0.075 11.9 0.0 2.3 2 0 0 2 2 2 1 Aminotransferase class I and II DUF2175 PF09943.4 gi|159040871|ref|YP_001540123.1| - 2e-36 124.0 0.0 2.3e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) COX1 PF00115.15 gi|159040872|ref|YP_001540124.1| - 3.2e-16 59.0 55.0 3.2e-16 59.0 38.1 2.2 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I HTH_10 PF04967.7 gi|159040873|ref|YP_001540125.1| - 1.7e-17 62.7 0.1 3.7e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|159040873|ref|YP_001540125.1| - 4.4e-05 22.6 0.5 0.00015 21.0 0.3 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|159040873|ref|YP_001540125.1| - 0.00022 20.8 0.1 0.00047 19.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|159040873|ref|YP_001540125.1| - 0.00027 20.2 0.0 0.00066 19.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|159040873|ref|YP_001540125.1| - 0.0021 18.0 0.0 0.0068 16.3 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|159040873|ref|YP_001540125.1| - 0.003 17.1 0.1 0.0082 15.7 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|159040873|ref|YP_001540125.1| - 0.0031 17.1 0.1 0.012 15.3 0.1 2.0 1 1 0 1 1 1 1 MarR family HTH_17 PF12728.2 gi|159040873|ref|YP_001540125.1| - 0.0032 17.6 0.0 0.007 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|159040873|ref|YP_001540125.1| - 0.0033 17.0 0.1 0.0081 15.7 0.1 1.7 1 0 0 1 1 1 1 HTH domain Mga PF05043.8 gi|159040873|ref|YP_001540125.1| - 0.01 16.1 0.0 0.025 14.8 0.0 1.7 1 1 0 1 1 1 0 Mga helix-turn-helix domain MerR PF00376.18 gi|159040873|ref|YP_001540125.1| - 0.011 15.2 0.1 0.021 14.3 0.1 1.4 1 0 0 1 1 1 0 MerR family regulatory protein HTH_AraC PF00165.18 gi|159040873|ref|YP_001540125.1| - 0.012 15.4 0.0 0.35 10.7 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family FeoC PF09012.5 gi|159040873|ref|YP_001540125.1| - 0.014 15.1 0.0 0.046 13.4 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator Sigma70_r4_2 PF08281.7 gi|159040873|ref|YP_001540125.1| - 0.014 14.8 0.4 0.027 13.9 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|159040873|ref|YP_001540125.1| - 0.016 14.8 0.3 0.79 9.4 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|159040873|ref|YP_001540125.1| - 0.027 14.1 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family IF2_N PF04760.10 gi|159040873|ref|YP_001540125.1| - 0.027 14.1 0.0 0.078 12.6 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_Mga PF08280.6 gi|159040873|ref|YP_001540125.1| - 0.031 14.0 0.0 0.072 12.8 0.0 1.7 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_8 PF02954.14 gi|159040873|ref|YP_001540125.1| - 0.033 13.7 0.1 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.1 gi|159040873|ref|YP_001540125.1| - 0.039 13.5 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GerE PF00196.14 gi|159040873|ref|YP_001540125.1| - 0.043 13.1 2.3 5.7 6.3 0.0 2.9 3 0 0 3 3 2 0 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|159040873|ref|YP_001540125.1| - 0.044 13.6 0.0 0.098 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_26 PF13443.1 gi|159040873|ref|YP_001540125.1| - 0.044 13.9 0.0 0.18 12.0 0.0 2.0 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain NUMOD1 PF07453.8 gi|159040873|ref|YP_001540125.1| - 0.051 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_DeoR PF08220.7 gi|159040873|ref|YP_001540125.1| - 0.053 13.0 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|159040873|ref|YP_001540125.1| - 0.053 13.4 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MerR_1 PF13411.1 gi|159040873|ref|YP_001540125.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_22 PF13309.1 gi|159040873|ref|YP_001540125.1| - 0.067 12.9 0.1 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_Tnp_1 PF01527.15 gi|159040873|ref|YP_001540125.1| - 0.067 13.1 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_38 PF13936.1 gi|159040873|ref|YP_001540125.1| - 0.082 12.4 0.1 0.42 10.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_6 PF01418.12 gi|159040873|ref|YP_001540125.1| - 0.096 12.4 0.1 0.28 10.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family HTH_27 PF13463.1 gi|159040873|ref|YP_001540125.1| - 0.11 12.7 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Hemerythrin PF01814.18 gi|159040874|ref|YP_001540126.1| - 4.7e-19 68.8 0.2 8.1e-13 48.6 0.0 1.5 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain DUF488 PF04343.8 gi|159040875|ref|YP_001540127.1| - 1.9e-30 105.7 0.1 2.1e-30 105.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 NIR_SIR PF01077.17 gi|159040876|ref|YP_001540128.1| - 5.4e-29 100.5 0.0 2.2e-19 69.3 0.0 2.4 2 1 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|159040876|ref|YP_001540128.1| - 5.8e-13 48.2 0.0 1.4e-05 24.6 0.0 2.4 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|159040877|ref|YP_001540129.1| - 8.7e-12 44.1 14.8 3.3e-09 35.9 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159040877|ref|YP_001540129.1| - 5.9e-09 36.1 9.1 2.9e-08 33.9 6.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159040877|ref|YP_001540129.1| - 2.8e-08 33.2 9.8 4.4e-07 29.4 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|159040877|ref|YP_001540129.1| - 3.6e-08 33.5 8.4 6.9e-08 32.6 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159040877|ref|YP_001540129.1| - 5e-08 32.6 6.9 7.6e-08 32.0 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159040877|ref|YP_001540129.1| - 5.1e-08 32.5 10.2 9.6e-08 31.7 5.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159040877|ref|YP_001540129.1| - 1.3e-07 31.2 3.3 1.3e-07 31.2 2.3 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159040877|ref|YP_001540129.1| - 4.7e-07 30.4 8.3 0.00016 22.3 0.8 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|159040877|ref|YP_001540129.1| - 3.3e-06 26.9 12.3 3.9e-05 23.6 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|159040877|ref|YP_001540129.1| - 3.7e-06 27.4 10.4 4.7e-05 23.8 7.2 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|159040877|ref|YP_001540129.1| - 1.2e-05 25.5 7.7 0.002 18.4 0.7 2.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|159040877|ref|YP_001540129.1| - 4.9e-05 23.5 19.4 0.00011 22.4 5.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|159040877|ref|YP_001540129.1| - 0.00011 22.5 0.8 0.00011 22.5 0.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|159040877|ref|YP_001540129.1| - 0.00022 21.1 20.9 0.004 17.1 1.8 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159040877|ref|YP_001540129.1| - 0.0073 16.6 11.4 0.31 11.4 7.9 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|159040877|ref|YP_001540129.1| - 0.078 12.8 2.7 0.18 11.7 1.9 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Tenui_PVC2 PF06656.6 gi|159040877|ref|YP_001540129.1| - 0.11 10.2 2.2 0.13 9.9 1.5 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein EamA PF00892.15 gi|159040878|ref|YP_001540130.1| - 1e-24 86.9 33.7 6.7e-14 52.0 9.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|159040878|ref|YP_001540130.1| - 0.014 15.5 11.5 0.014 15.5 8.0 3.6 1 1 2 3 3 3 0 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|159040878|ref|YP_001540130.1| - 0.17 11.7 13.2 1.3 8.8 0.6 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 PsbJ PF01788.12 gi|159040879|ref|YP_001540131.1| - 0.75 9.3 7.9 0.63 9.6 1.7 2.6 2 0 0 2 2 2 0 PsbJ PaREP1 PF05942.6 gi|159040880|ref|YP_001540132.1| - 8.2e-27 93.3 3.0 1e-26 93.0 2.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family RTC PF01137.16 gi|159040881|ref|YP_001540133.1| - 1.4e-83 279.1 0.0 1.6e-83 278.9 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|159040881|ref|YP_001540133.1| - 5.9e-30 103.3 0.1 1.1e-29 102.5 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain SRP54 PF00448.17 gi|159040882|ref|YP_001540134.1| - 9.9e-64 214.4 0.1 1.4e-63 213.9 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|159040882|ref|YP_001540134.1| - 1e-29 102.8 3.9 7.7e-29 100.0 1.8 2.4 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|159040882|ref|YP_001540134.1| - 3.4e-10 39.8 0.3 3.4e-10 39.8 0.2 2.7 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|159040882|ref|YP_001540134.1| - 9.5e-07 28.4 0.3 3.7e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|159040882|ref|YP_001540134.1| - 1e-05 25.2 0.3 4.3e-05 23.2 0.1 2.0 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|159040882|ref|YP_001540134.1| - 1.5e-05 25.1 0.1 6.7e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|159040882|ref|YP_001540134.1| - 0.00015 22.5 0.1 0.00047 20.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain cobW PF02492.14 gi|159040882|ref|YP_001540134.1| - 0.0004 19.8 0.9 0.0017 17.8 0.6 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|159040882|ref|YP_001540134.1| - 0.0024 17.5 0.0 0.0046 16.6 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase ArgK PF03308.11 gi|159040882|ref|YP_001540134.1| - 0.0038 16.0 0.5 0.0087 14.8 0.1 1.8 2 1 0 2 2 2 1 ArgK protein AAA_10 PF12846.2 gi|159040882|ref|YP_001540134.1| - 0.0076 15.7 0.5 0.014 14.8 0.3 1.7 1 1 0 1 1 1 1 AAA-like domain Zeta_toxin PF06414.7 gi|159040882|ref|YP_001540134.1| - 0.0082 15.2 0.0 0.022 13.8 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin MipZ PF09140.6 gi|159040882|ref|YP_001540134.1| - 0.0088 15.1 0.1 0.32 10.0 0.1 2.3 1 1 0 1 1 1 1 ATPase MipZ AAA_33 PF13671.1 gi|159040882|ref|YP_001540134.1| - 0.0091 15.8 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|159040882|ref|YP_001540134.1| - 0.011 15.1 0.3 2.4 7.6 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.10 gi|159040882|ref|YP_001540134.1| - 0.022 14.4 0.7 1.7 8.3 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|159040882|ref|YP_001540134.1| - 0.038 13.9 0.1 0.1 12.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_31 PF13614.1 gi|159040882|ref|YP_001540134.1| - 0.043 13.7 0.0 5.8 6.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|159040882|ref|YP_001540134.1| - 0.047 13.9 0.2 0.33 11.2 0.0 2.3 2 1 0 2 2 2 0 ABC transporter AAA_25 PF13481.1 gi|159040882|ref|YP_001540134.1| - 0.052 12.9 0.9 0.17 11.2 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|159040882|ref|YP_001540134.1| - 0.057 12.9 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|159040882|ref|YP_001540134.1| - 0.058 12.7 0.2 0.41 10.0 0.1 2.4 2 0 0 2 2 2 0 Thymidylate kinase RNA_helicase PF00910.17 gi|159040882|ref|YP_001540134.1| - 0.06 13.5 0.2 12 6.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|159040882|ref|YP_001540134.1| - 0.075 12.7 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|159040882|ref|YP_001540134.1| - 0.21 11.8 2.6 0.76 9.9 0.5 3.0 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|159040882|ref|YP_001540134.1| - 0.26 10.8 1.4 1.7 8.1 0.4 2.6 2 1 1 3 3 3 0 AAA domain KaiC PF06745.8 gi|159040883|ref|YP_001540135.1| - 6.1e-59 198.8 0.1 1.1e-58 198.1 0.0 1.3 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|159040883|ref|YP_001540135.1| - 3.2e-09 36.4 0.0 4.9e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|159040883|ref|YP_001540135.1| - 0.0065 15.3 0.0 0.0094 14.8 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.6 gi|159040883|ref|YP_001540135.1| - 0.0065 14.8 0.1 0.098 10.9 0.0 2.0 2 0 0 2 2 2 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|159040883|ref|YP_001540135.1| - 0.037 12.9 0.0 0.049 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|159040883|ref|YP_001540135.1| - 0.044 13.9 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|159040884|ref|YP_001540136.1| - 3.8e-13 48.9 0.0 5.9e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|159040884|ref|YP_001540136.1| - 3.3e-06 27.9 0.2 6.2e-05 23.8 0.0 2.9 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|159040884|ref|YP_001540136.1| - 4.2e-05 23.8 0.0 0.0004 20.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|159040884|ref|YP_001540136.1| - 0.00031 20.7 0.0 0.001 19.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|159040884|ref|YP_001540136.1| - 0.0018 17.4 0.0 0.0038 16.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|159040884|ref|YP_001540136.1| - 0.0025 17.6 0.0 0.023 14.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|159040884|ref|YP_001540136.1| - 0.0028 17.8 0.0 0.12 12.6 0.0 2.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0278 PF08745.6 gi|159040884|ref|YP_001540136.1| - 0.0032 16.7 0.0 0.018 14.2 0.0 2.2 3 0 0 3 3 3 1 UPF0278 family AAA_14 PF13173.1 gi|159040884|ref|YP_001540136.1| - 0.0035 17.2 0.0 0.012 15.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|159040884|ref|YP_001540136.1| - 0.0049 16.3 0.0 0.0093 15.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|159040884|ref|YP_001540136.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain KTI12 PF08433.5 gi|159040884|ref|YP_001540136.1| - 0.0072 15.5 0.0 0.015 14.5 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|159040884|ref|YP_001540136.1| - 0.013 14.9 0.0 0.03 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|159040884|ref|YP_001540136.1| - 0.013 15.1 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 FtsK_SpoIIIE PF01580.13 gi|159040884|ref|YP_001540136.1| - 0.013 14.9 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|159040884|ref|YP_001540136.1| - 0.016 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|159040884|ref|YP_001540136.1| - 0.03 13.8 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RuvB_N PF05496.7 gi|159040884|ref|YP_001540136.1| - 0.032 13.2 0.0 0.094 11.7 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus ATP_bind_1 PF03029.12 gi|159040884|ref|YP_001540136.1| - 0.037 13.5 0.1 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|159040884|ref|YP_001540136.1| - 0.038 14.1 0.0 0.09 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|159040884|ref|YP_001540136.1| - 0.054 13.0 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PRK PF00485.13 gi|159040884|ref|YP_001540136.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|159040884|ref|YP_001540136.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|159040884|ref|YP_001540136.1| - 0.07 11.8 0.2 0.17 10.6 0.0 1.7 2 0 0 2 2 2 0 ArgK protein KH_1 PF00013.24 gi|159040884|ref|YP_001540136.1| - 0.082 12.5 0.3 0.22 11.1 0.0 2.0 2 0 0 2 2 1 0 KH domain Thymidylate_kin PF02223.12 gi|159040884|ref|YP_001540136.1| - 0.092 12.1 0.0 0.31 10.4 0.0 1.9 1 1 1 2 2 2 0 Thymidylate kinase NACHT PF05729.7 gi|159040884|ref|YP_001540136.1| - 0.12 12.0 0.1 0.26 10.9 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|159040884|ref|YP_001540136.1| - 0.15 11.5 0.1 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF364 PF04016.7 gi|159040885|ref|YP_001540137.1| - 2e-42 143.9 0.0 3.1e-42 143.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|159040885|ref|YP_001540137.1| - 1.1e-22 79.9 0.7 1.4e-21 76.3 0.3 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4213) THF_DHG_CYH_C PF02882.14 gi|159040885|ref|YP_001540137.1| - 0.032 13.3 0.1 0.14 11.2 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thymidylate_kin PF02223.12 gi|159040886|ref|YP_001540138.1| - 8.7e-47 158.9 0.0 9.8e-47 158.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|159040886|ref|YP_001540138.1| - 6.9e-06 26.3 0.1 6e-05 23.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|159040886|ref|YP_001540138.1| - 0.0025 18.6 0.1 0.16 12.8 0.0 2.3 1 1 1 2 2 2 1 AAA domain dNK PF01712.14 gi|159040886|ref|YP_001540138.1| - 0.005 16.7 0.0 0.0089 15.9 0.0 1.4 1 0 0 1 1 1 1 Deoxynucleoside kinase MobB PF03205.9 gi|159040886|ref|YP_001540138.1| - 0.0088 15.7 0.0 0.031 13.9 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|159040886|ref|YP_001540138.1| - 0.016 15.0 0.0 0.1 12.4 0.0 2.3 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|159040886|ref|YP_001540138.1| - 0.016 13.9 0.0 0.055 12.2 0.0 1.7 2 0 0 2 2 2 0 ArgK protein SKI PF01202.17 gi|159040886|ref|YP_001540138.1| - 0.017 15.0 0.0 4.6 7.0 0.0 2.5 2 1 0 2 2 2 0 Shikimate kinase Gag_spuma PF03276.9 gi|159040886|ref|YP_001540138.1| - 0.023 13.0 0.0 0.032 12.5 0.0 1.1 1 0 0 1 1 1 0 Spumavirus gag protein AAA_16 PF13191.1 gi|159040886|ref|YP_001540138.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Lzipper-MIP1 PF14389.1 gi|159040887|ref|YP_001540139.1| - 0.058 13.5 0.1 2.2 8.4 0.0 2.6 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DegS PF05384.6 gi|159040887|ref|YP_001540139.1| - 0.095 11.9 0.6 0.39 9.9 0.0 2.2 1 1 0 2 2 2 0 Sensor protein DegS DUF948 PF06103.6 gi|159040887|ref|YP_001540139.1| - 6.8 6.6 11.9 14 5.6 0.3 4.3 5 0 0 5 5 5 0 Bacterial protein of unknown function (DUF948) ABC_tran PF00005.22 gi|159040888|ref|YP_001540140.1| - 5e-32 111.0 0.0 7.3e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159040888|ref|YP_001540140.1| - 3.7e-13 50.1 0.0 4.1e-07 30.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159040888|ref|YP_001540140.1| - 4.1e-08 32.7 0.1 1.3e-07 31.0 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|159040888|ref|YP_001540140.1| - 0.00012 21.4 0.0 0.00025 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|159040888|ref|YP_001540140.1| - 0.00017 21.1 0.3 0.0085 15.5 0.2 2.1 1 1 1 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|159040888|ref|YP_001540140.1| - 0.00017 20.8 0.0 0.00028 20.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|159040888|ref|YP_001540140.1| - 0.00036 19.7 0.0 0.37 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|159040888|ref|YP_001540140.1| - 0.0011 18.4 0.0 0.0038 16.6 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|159040888|ref|YP_001540140.1| - 0.0012 18.9 0.0 0.01 15.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|159040888|ref|YP_001540140.1| - 0.0013 19.5 0.0 0.0077 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|159040888|ref|YP_001540140.1| - 0.0014 18.0 0.1 0.99 8.7 0.0 2.2 2 0 0 2 2 2 2 MutS domain V AAA_22 PF13401.1 gi|159040888|ref|YP_001540140.1| - 0.0023 18.0 0.3 0.024 14.7 0.2 2.5 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|159040888|ref|YP_001540140.1| - 0.0082 16.0 0.1 0.018 14.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|159040888|ref|YP_001540140.1| - 0.009 15.9 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|159040888|ref|YP_001540140.1| - 0.0092 15.4 0.0 0.44 9.9 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein T2SE PF00437.15 gi|159040888|ref|YP_001540140.1| - 0.012 14.5 0.0 0.02 13.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|159040888|ref|YP_001540140.1| - 0.013 15.3 0.1 0.13 12.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|159040888|ref|YP_001540140.1| - 0.014 15.7 0.0 0.033 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|159040888|ref|YP_001540140.1| - 0.02 13.5 0.0 0.027 13.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein Arch_ATPase PF01637.13 gi|159040888|ref|YP_001540140.1| - 0.028 14.1 1.2 0.037 13.7 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|159040888|ref|YP_001540140.1| - 0.031 14.5 0.0 0.063 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|159040888|ref|YP_001540140.1| - 0.037 13.4 0.1 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|159040888|ref|YP_001540140.1| - 0.048 13.3 0.0 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|159040888|ref|YP_001540140.1| - 0.086 13.0 0.0 0.25 11.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|159040888|ref|YP_001540140.1| - 0.087 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|159040888|ref|YP_001540140.1| - 0.1 12.3 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|159040888|ref|YP_001540140.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|159040888|ref|YP_001540140.1| - 0.11 12.1 1.8 4.4 6.9 0.0 3.0 2 1 1 3 3 3 0 NTPase G-alpha PF00503.15 gi|159040888|ref|YP_001540140.1| - 0.14 10.7 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit CbiA PF01656.18 gi|159040888|ref|YP_001540140.1| - 0.25 10.7 1.5 0.72 9.2 1.1 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NADHdh PF00146.16 gi|159040889|ref|YP_001540141.1| - 6.8e-52 176.4 20.4 8.7e-52 176.1 14.2 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|159040890|ref|YP_001540142.1| - 2.2e-12 46.0 11.0 4.3e-06 26.1 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|159040890|ref|YP_001540142.1| - 6.3e-11 42.3 19.1 1.2e-07 31.8 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159040890|ref|YP_001540142.1| - 8.5e-10 38.8 7.6 1.8e-09 37.8 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159040890|ref|YP_001540142.1| - 9e-10 38.2 16.8 1e-06 28.3 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159040890|ref|YP_001540142.1| - 1.5e-09 37.5 5.8 2.4e-09 36.9 4.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159040890|ref|YP_001540142.1| - 2.3e-09 36.7 11.9 0.0002 21.0 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|159040890|ref|YP_001540142.1| - 2.9e-09 36.3 10.8 0.00026 20.7 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159040890|ref|YP_001540142.1| - 3.1e-09 37.4 2.6 0.0021 18.7 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|159040890|ref|YP_001540142.1| - 9.4e-08 31.9 28.3 6.1e-05 22.9 7.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159040890|ref|YP_001540142.1| - 2.5e-07 30.9 0.7 0.019 15.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|159040890|ref|YP_001540142.1| - 1.3e-06 28.2 10.3 0.0056 16.9 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|159040890|ref|YP_001540142.1| - 1.2e-05 25.5 4.6 0.044 14.2 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|159040890|ref|YP_001540142.1| - 0.00024 21.4 17.1 0.052 14.1 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|159040890|ref|YP_001540142.1| - 0.00038 20.7 9.1 0.012 15.9 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|159040890|ref|YP_001540142.1| - 0.002 18.6 8.7 0.59 10.7 2.6 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_5 PF12801.2 gi|159040890|ref|YP_001540142.1| - 0.007 16.1 3.4 0.88 9.4 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|159040890|ref|YP_001540142.1| - 0.01 15.4 2.3 1.7 8.3 0.2 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster zf-C2HC_2 PF13913.1 gi|159040891|ref|YP_001540143.1| - 0.00037 20.0 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 zinc-finger of a C2HC-type DUF2225 PF09986.4 gi|159040891|ref|YP_001540143.1| - 0.038 13.4 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-Di19 PF05605.7 gi|159040891|ref|YP_001540143.1| - 0.057 13.5 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|159040891|ref|YP_001540143.1| - 0.059 13.7 0.1 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type SoxD PF04267.7 gi|159040891|ref|YP_001540143.1| - 0.082 12.7 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family DUF3836 PF12930.2 gi|159040891|ref|YP_001540143.1| - 0.11 11.9 0.1 0.13 11.7 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF3836) zf-C2H2_4 PF13894.1 gi|159040891|ref|YP_001540143.1| - 0.11 12.8 0.1 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger Rad50_zn_hook PF04423.9 gi|159040891|ref|YP_001540143.1| - 0.12 11.8 0.5 0.35 10.3 0.4 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif Citrate_synt PF00285.16 gi|159040892|ref|YP_001540144.1| - 1.8e-137 457.8 0.0 2e-137 457.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase SIS PF01380.17 gi|159040894|ref|YP_001540146.1| - 9.7e-17 60.7 0.1 1.6e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|159040894|ref|YP_001540146.1| - 1.5e-11 44.1 2.4 1.8e-06 27.6 1.0 2.3 1 1 1 2 2 2 2 SIS domain CPSase_L_chain PF00289.17 gi|159040894|ref|YP_001540146.1| - 0.067 13.3 0.4 1.3 9.2 0.1 2.3 2 1 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain PRMT5 PF05185.11 gi|159040894|ref|YP_001540146.1| - 0.17 10.8 0.7 0.61 8.9 0.0 1.9 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase AlaDh_PNT_C PF01262.16 gi|159040894|ref|YP_001540146.1| - 0.21 11.1 6.2 3.8 7.0 0.7 2.2 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoMet_dc PF02675.10 gi|159040895|ref|YP_001540147.1| - 1.9e-35 120.9 0.2 2.2e-35 120.7 0.1 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF3384 PF11864.3 gi|159040896|ref|YP_001540148.1| - 0.054 11.9 2.7 0.091 11.2 1.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3384) RseC_MucC PF04246.7 gi|159040896|ref|YP_001540148.1| - 2.6 7.6 5.0 0.59 9.7 0.7 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Ribosomal_L24e PF01246.15 gi|159040897|ref|YP_001540149.1| - 1.7e-17 63.0 0.6 1.8e-17 62.9 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|159040897|ref|YP_001540149.1| - 1.3e-05 24.7 0.2 2e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-ribbon_3 PF13248.1 gi|159040897|ref|YP_001540149.1| - 0.03 13.5 0.0 0.053 12.7 0.0 1.4 1 1 0 1 1 1 0 zinc-ribbon domain Ta0938 PF11494.3 gi|159040897|ref|YP_001540149.1| - 0.11 12.5 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Ta0938 zf-GRF PF06839.7 gi|159040897|ref|YP_001540149.1| - 0.2 11.6 1.1 0.6 10.0 0.0 2.0 2 0 0 2 2 2 0 GRF zinc finger zf-HIT PF04438.11 gi|159040897|ref|YP_001540149.1| - 0.22 11.2 4.0 0.4 10.3 2.8 1.5 1 1 0 1 1 1 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|159040897|ref|YP_001540149.1| - 0.44 10.1 3.1 0.44 10.0 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DUF2116 PF09889.4 gi|159040897|ref|YP_001540149.1| - 0.64 9.8 2.7 6 6.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NTPase_1 PF03266.10 gi|159040898|ref|YP_001540150.1| - 3e-43 147.4 0.1 3.4e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 NTPase MobB PF03205.9 gi|159040898|ref|YP_001540150.1| - 9.8e-06 25.3 0.2 1.7e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|159040898|ref|YP_001540150.1| - 1.7e-05 24.9 0.4 0.00047 20.3 0.0 2.4 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.1 gi|159040898|ref|YP_001540150.1| - 2.2e-05 24.1 0.2 4.1e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|159040898|ref|YP_001540150.1| - 5.2e-05 24.0 0.0 8.1e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|159040898|ref|YP_001540150.1| - 0.00013 20.8 0.5 0.00019 20.3 0.4 1.2 1 0 0 1 1 1 1 ArgK protein IstB_IS21 PF01695.12 gi|159040898|ref|YP_001540150.1| - 0.00015 21.2 0.1 0.089 12.2 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|159040898|ref|YP_001540150.1| - 0.00036 20.5 0.1 0.0007 19.6 0.1 1.5 2 0 0 2 2 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|159040898|ref|YP_001540150.1| - 0.00037 20.2 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|159040898|ref|YP_001540150.1| - 0.00037 20.8 0.1 0.00052 20.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|159040898|ref|YP_001540150.1| - 0.0004 20.5 0.0 0.00064 19.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|159040898|ref|YP_001540150.1| - 0.00048 19.8 0.0 0.0016 18.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|159040898|ref|YP_001540150.1| - 0.00086 18.8 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|159040898|ref|YP_001540150.1| - 0.0013 18.3 0.0 0.004 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|159040898|ref|YP_001540150.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|159040898|ref|YP_001540150.1| - 0.0029 17.2 0.1 0.009 15.6 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.1 gi|159040898|ref|YP_001540150.1| - 0.0033 17.3 0.1 0.0045 16.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|159040898|ref|YP_001540150.1| - 0.0047 16.3 0.1 0.0063 15.9 0.1 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|159040898|ref|YP_001540150.1| - 0.014 15.3 0.1 0.084 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|159040898|ref|YP_001540150.1| - 0.021 14.6 0.0 0.025 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|159040898|ref|YP_001540150.1| - 0.021 13.8 0.1 0.07 12.1 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus ATP_bind_1 PF03029.12 gi|159040898|ref|YP_001540150.1| - 0.031 13.8 0.4 0.062 12.8 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KaiC PF06745.8 gi|159040898|ref|YP_001540150.1| - 0.032 13.3 0.1 1.1 8.3 0.0 2.0 2 0 0 2 2 2 0 KaiC MMR_HSR1 PF01926.18 gi|159040898|ref|YP_001540150.1| - 0.032 14.1 0.2 0.039 13.9 0.1 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2478 PF10649.4 gi|159040898|ref|YP_001540150.1| - 0.039 13.2 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) AAA_25 PF13481.1 gi|159040898|ref|YP_001540150.1| - 0.039 13.3 0.1 0.087 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|159040898|ref|YP_001540150.1| - 0.041 14.3 0.1 0.067 13.6 0.1 1.4 1 0 0 1 1 1 0 Miro-like protein APS_kinase PF01583.15 gi|159040898|ref|YP_001540150.1| - 0.041 13.5 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.17 gi|159040898|ref|YP_001540150.1| - 0.06 12.7 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2075 PF09848.4 gi|159040898|ref|YP_001540150.1| - 0.07 12.0 0.1 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|159040898|ref|YP_001540150.1| - 0.075 12.5 0.1 0.17 11.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|159040898|ref|YP_001540150.1| - 0.077 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|159040898|ref|YP_001540150.1| - 0.092 11.5 0.3 0.16 10.7 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.9 gi|159040898|ref|YP_001540150.1| - 0.1 11.6 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_24 PF13479.1 gi|159040898|ref|YP_001540150.1| - 0.1 12.1 0.3 0.18 11.3 0.2 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|159040898|ref|YP_001540150.1| - 0.11 11.5 0.1 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.12 gi|159040898|ref|YP_001540150.1| - 0.12 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase DUF258 PF03193.11 gi|159040898|ref|YP_001540150.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Viral_helicase1 PF01443.13 gi|159040898|ref|YP_001540150.1| - 0.15 11.5 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MFS_1 PF07690.11 gi|159040899|ref|YP_001540151.1| - 6.2e-18 64.6 35.8 9.1e-12 44.3 10.0 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily ROK PF00480.15 gi|159040900|ref|YP_001540152.1| - 7.1e-36 123.7 0.3 9.4e-36 123.2 0.2 1.2 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.16 gi|159040900|ref|YP_001540152.1| - 0.0011 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Ribosomal_L23 PF00276.15 gi|159040901|ref|YP_001540153.1| - 8.8e-15 54.4 4.7 1.3e-14 53.8 3.3 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 DUF1246 PF06849.7 gi|159040901|ref|YP_001540153.1| - 0.012 15.4 0.1 0.013 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1246) DNA_mis_repair PF01119.14 gi|159040901|ref|YP_001540153.1| - 0.029 13.8 0.2 0.2 11.1 0.1 1.9 1 1 0 2 2 2 0 DNA mismatch repair protein, C-terminal domain DUF3854 PF12965.2 gi|159040901|ref|YP_001540153.1| - 0.044 13.4 0.1 0.14 11.8 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3854) NTNH_C PF08470.5 gi|159040901|ref|YP_001540153.1| - 0.047 13.3 1.6 0.13 11.8 1.0 1.6 1 1 0 1 1 1 0 Nontoxic nonhaemagglutinin C-terminal RRM_6 PF14259.1 gi|159040901|ref|YP_001540153.1| - 0.057 13.3 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Ribosomal_L4 PF00573.17 gi|159040902|ref|YP_001540154.1| - 1.1e-42 145.6 1.1 1.3e-42 145.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|159040903|ref|YP_001540155.1| - 1.9e-56 191.3 0.5 2.3e-56 191.1 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 DEAD PF00270.24 gi|159040904|ref|YP_001540156.1| - 3e-27 95.1 0.0 8.5e-27 93.6 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|159040904|ref|YP_001540156.1| - 6.2e-15 55.1 0.9 3.1e-14 52.8 0.1 2.8 3 0 0 3 3 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|159040904|ref|YP_001540156.1| - 6e-09 35.6 0.0 1.4e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|159040904|ref|YP_001540156.1| - 2.2e-08 33.8 0.1 1e-07 31.7 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif ResIII PF04851.10 gi|159040904|ref|YP_001540156.1| - 2e-06 27.7 0.0 3.9e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|159040904|ref|YP_001540156.1| - 7.2e-06 25.4 0.7 0.012 15.3 0.1 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|159040904|ref|YP_001540156.1| - 1.1e-05 24.8 0.0 3.4e-05 23.2 0.0 2.0 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.18 gi|159040904|ref|YP_001540156.1| - 0.00073 18.4 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Sec63 PF02889.11 gi|159040904|ref|YP_001540156.1| - 0.0041 16.3 0.0 0.011 14.9 0.0 1.7 1 1 0 1 1 1 1 Sec63 Brl domain HHH_8 PF14716.1 gi|159040904|ref|YP_001540156.1| - 0.0063 16.6 0.1 0.074 13.2 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|159040904|ref|YP_001540156.1| - 0.034 14.1 0.0 0.13 12.2 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|159040904|ref|YP_001540156.1| - 0.057 12.8 0.0 0.2 11.1 0.0 2.0 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain DUF4332 PF14229.1 gi|159040904|ref|YP_001540156.1| - 0.063 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) SOCS_box PF07525.11 gi|159040904|ref|YP_001540156.1| - 0.13 12.1 0.2 0.3 10.9 0.1 1.6 1 0 0 1 1 1 0 SOCS box AMMECR1 PF01871.12 gi|159040905|ref|YP_001540157.1| - 1.4e-16 60.0 0.0 2e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 AMMECR1 TAFII28 PF04719.9 gi|159040905|ref|YP_001540157.1| - 0.082 12.7 0.3 0.28 11.0 0.0 2.0 3 0 0 3 3 3 0 hTAFII28-like protein conserved region YqzL PF14006.1 gi|159040905|ref|YP_001540157.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 YqzL-like protein Ribosomal_L7Ae PF01248.21 gi|159040906|ref|YP_001540158.1| - 6.4e-17 60.8 0.0 7e-17 60.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|159040907|ref|YP_001540159.1| - 5.2e-13 48.3 1.0 1.2e-08 34.3 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|159040907|ref|YP_001540159.1| - 1.9e-11 43.6 1.0 2.3e-11 43.3 0.1 1.5 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|159040907|ref|YP_001540159.1| - 0.012 15.2 0.3 0.03 13.9 0.2 1.8 1 1 0 1 1 1 0 KH domain Ribosom_S12_S23 PF00164.20 gi|159040908|ref|YP_001540160.1| - 2.8e-29 101.0 1.1 1.6e-14 53.3 0.1 2.4 2 0 0 2 2 2 2 Ribosomal protein S12/S23 LAGLIDADG_3 PF14528.1 gi|159040908|ref|YP_001540160.1| - 4.5e-06 26.8 0.2 8.3e-05 22.7 0.0 2.9 3 0 0 3 3 3 1 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|159040908|ref|YP_001540160.1| - 7e-06 25.1 0.0 0.044 12.6 0.0 2.2 2 0 0 2 2 2 2 Intein splicing domain HTH_Tnp_IS630 PF01710.11 gi|159040908|ref|YP_001540160.1| - 0.011 15.4 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Transposase TrmB PF01978.14 gi|159040908|ref|YP_001540160.1| - 0.079 12.6 0.3 5.3 6.8 0.0 3.0 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Aminotran_1_2 PF00155.16 gi|159040909|ref|YP_001540161.1| - 3.1e-78 263.2 0.0 3.6e-78 263.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|159040909|ref|YP_001540161.1| - 2e-13 50.1 0.0 3.2e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|159040909|ref|YP_001540161.1| - 1.7e-11 43.4 0.0 1.3e-10 40.6 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|159040909|ref|YP_001540161.1| - 2.9e-08 32.4 0.0 7.7e-08 31.0 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|159040909|ref|YP_001540161.1| - 3.2e-07 29.7 0.0 4.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|159040909|ref|YP_001540161.1| - 0.0074 14.8 0.0 0.013 14.0 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Radical_SAM PF04055.16 gi|159040909|ref|YP_001540161.1| - 0.092 12.9 0.0 1 9.5 0.0 2.4 2 1 1 3 3 3 0 Radical SAM superfamily gag-asp_proteas PF13975.1 gi|159040910|ref|YP_001540162.1| - 6.3e-08 32.3 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.1 gi|159040910|ref|YP_001540162.1| - 1.6e-07 31.7 0.1 2.2e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|159040910|ref|YP_001540162.1| - 0.0001 22.1 0.0 0.00015 21.6 0.0 1.3 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.5 gi|159040910|ref|YP_001540162.1| - 0.022 14.3 0.0 0.04 13.4 0.0 1.6 1 1 0 1 1 1 0 Aspartyl protease Baculo_PEP_C PF04513.7 gi|159040911|ref|YP_001540163.1| - 7.2e-08 32.3 11.9 0.00043 20.1 2.8 2.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HSBP1 PF06825.7 gi|159040911|ref|YP_001540163.1| - 1.7e-07 30.7 21.4 0.0063 16.0 1.3 4.8 1 1 3 4 4 4 3 Heat shock factor binding protein 1 AAA_13 PF13166.1 gi|159040911|ref|YP_001540163.1| - 6.1e-07 28.3 9.8 7.7e-07 27.9 6.8 1.0 1 0 0 1 1 1 1 AAA domain NPV_P10 PF05531.7 gi|159040911|ref|YP_001540163.1| - 1.6e-06 28.2 15.8 0.046 13.9 2.7 4.3 1 1 2 3 3 3 3 Nucleopolyhedrovirus P10 protein RmuC PF02646.11 gi|159040911|ref|YP_001540163.1| - 8.3e-06 24.8 7.2 0.0041 16.0 0.2 2.2 2 0 0 2 2 2 2 RmuC family Matrilin_ccoil PF10393.4 gi|159040911|ref|YP_001540163.1| - 1.8e-05 23.9 10.7 0.76 9.1 0.1 5.7 3 1 3 6 6 5 1 Trimeric coiled-coil oligomerisation domain of matrilin DUF4455 PF14643.1 gi|159040911|ref|YP_001540163.1| - 5.7e-05 21.9 3.1 7.9e-05 21.4 2.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) Apolipoprotein PF01442.13 gi|159040911|ref|YP_001540163.1| - 0.00011 21.8 5.7 0.00022 20.7 3.9 1.8 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Syntaxin PF00804.20 gi|159040911|ref|YP_001540163.1| - 0.00011 22.3 17.0 0.0016 18.5 10.0 3.0 1 1 1 2 2 2 2 Syntaxin IFT57 PF10498.4 gi|159040911|ref|YP_001540163.1| - 0.00018 20.3 9.7 0.00018 20.3 6.7 1.5 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF948 PF06103.6 gi|159040911|ref|YP_001540163.1| - 0.00029 20.6 10.2 0.04 13.7 0.5 3.3 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF948) DUF2130 PF09903.4 gi|159040911|ref|YP_001540163.1| - 0.00032 19.5 8.9 0.0031 16.3 5.3 2.3 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2130) FliD_C PF07195.7 gi|159040911|ref|YP_001540163.1| - 0.00036 19.9 9.1 0.053 12.8 1.4 2.7 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus MCPsignal PF00015.16 gi|159040911|ref|YP_001540163.1| - 0.00052 19.6 15.3 0.0053 16.3 2.1 2.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Spectrin PF00435.16 gi|159040911|ref|YP_001540163.1| - 0.0006 20.0 8.0 0.18 12.0 2.2 3.1 1 1 1 2 2 2 2 Spectrin repeat Mt_ATP-synt_D PF05873.7 gi|159040911|ref|YP_001540163.1| - 0.00066 19.3 3.3 0.25 10.9 0.1 2.3 1 1 1 2 2 2 1 ATP synthase D chain, mitochondrial (ATP5H) ApoLp-III PF07464.6 gi|159040911|ref|YP_001540163.1| - 0.00072 19.6 5.7 0.0061 16.5 3.9 2.1 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) DUF3584 PF12128.3 gi|159040911|ref|YP_001540163.1| - 0.0008 16.8 7.1 0.001 16.5 5.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) HalX PF08663.5 gi|159040911|ref|YP_001540163.1| - 0.0012 18.7 8.6 0.45 10.5 0.4 4.2 1 1 3 4 4 4 1 HalX domain Mer2 PF09074.5 gi|159040911|ref|YP_001540163.1| - 0.0012 18.7 14.3 0.0013 18.6 9.3 1.5 1 1 0 1 1 1 1 Mer2 Phage_GPO PF05929.6 gi|159040911|ref|YP_001540163.1| - 0.0014 17.9 5.5 0.0034 16.6 3.8 1.7 1 1 0 1 1 1 1 Phage capsid scaffolding protein (GPO) serine peptidase Atg14 PF10186.4 gi|159040911|ref|YP_001540163.1| - 0.0018 17.2 14.7 0.004 16.1 10.2 1.6 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF1664 PF07889.7 gi|159040911|ref|YP_001540163.1| - 0.0019 18.0 13.0 0.26 11.0 4.0 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Transcrip_act PF04949.8 gi|159040911|ref|YP_001540163.1| - 0.0019 17.8 12.6 0.017 14.7 7.8 2.5 1 1 1 2 2 2 2 Transcriptional activator Mnd1 PF03962.10 gi|159040911|ref|YP_001540163.1| - 0.002 17.8 5.6 0.0036 17.0 3.8 1.5 1 1 0 1 1 1 1 Mnd1 family DUF4515 PF14988.1 gi|159040911|ref|YP_001540163.1| - 0.0024 17.5 6.2 0.18 11.4 0.2 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4515) Rsd_AlgQ PF04353.8 gi|159040911|ref|YP_001540163.1| - 0.0034 17.0 4.3 0.0039 16.9 1.0 2.1 1 1 1 2 2 2 1 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PilJ PF13675.1 gi|159040911|ref|YP_001540163.1| - 0.0043 17.3 2.3 0.035 14.4 1.6 2.4 1 1 0 1 1 1 1 Type IV pili methyl-accepting chemotaxis transducer N-term Transposase_22 PF02994.9 gi|159040911|ref|YP_001540163.1| - 0.0046 15.5 16.5 0.012 14.1 10.2 1.8 1 1 0 1 1 1 1 L1 transposable element KMP11 PF03037.11 gi|159040911|ref|YP_001540163.1| - 0.0053 17.3 4.1 0.14 12.7 1.9 3.2 1 1 1 2 2 2 1 Kinetoplastid membrane protein 11 Phasin PF05597.6 gi|159040911|ref|YP_001540163.1| - 0.0059 16.3 9.5 0.04 13.6 5.8 2.6 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) YlqD PF11068.3 gi|159040911|ref|YP_001540163.1| - 0.006 16.6 3.5 0.006 16.6 2.4 2.6 2 1 1 3 3 2 1 YlqD protein DUF3450 PF11932.3 gi|159040911|ref|YP_001540163.1| - 0.0063 15.8 6.2 0.0063 15.8 4.3 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) DUF883 PF05957.8 gi|159040911|ref|YP_001540163.1| - 0.0065 16.8 6.0 0.8 10.1 0.8 2.6 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF883) GAS PF13851.1 gi|159040911|ref|YP_001540163.1| - 0.0069 15.5 11.3 0.0083 15.3 7.1 1.7 2 0 0 2 2 1 1 Growth-arrest specific micro-tubule binding Prefoldin_3 PF13758.1 gi|159040911|ref|YP_001540163.1| - 0.007 16.1 20.2 0.37 10.5 1.6 3.7 1 1 2 3 3 3 2 Prefoldin subunit DUF4041 PF13250.1 gi|159040911|ref|YP_001540163.1| - 0.0071 15.8 10.5 1.2 8.6 0.1 4.5 1 1 4 5 5 4 0 Domain of unknown function (DUF4041) DUF4407 PF14362.1 gi|159040911|ref|YP_001540163.1| - 0.0083 15.1 2.6 0.012 14.5 1.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) CHASE3 PF05227.8 gi|159040911|ref|YP_001540163.1| - 0.0085 15.7 12.7 0.35 10.5 3.9 2.6 1 1 1 2 2 2 2 CHASE3 domain CorA PF01544.13 gi|159040911|ref|YP_001540163.1| - 0.0089 15.0 17.5 1.3 8.0 12.2 2.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2884 PF11101.3 gi|159040911|ref|YP_001540163.1| - 0.0089 15.4 5.2 0.059 12.7 1.8 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF2884) Prefoldin_2 PF01920.15 gi|159040911|ref|YP_001540163.1| - 0.0095 15.6 12.8 0.15 11.8 0.9 3.6 2 1 1 4 4 3 1 Prefoldin subunit Erythro-docking PF09277.6 gi|159040911|ref|YP_001540163.1| - 0.0096 15.5 5.1 1.4 8.6 0.0 4.2 2 1 0 3 3 2 0 Erythronolide synthase, docking HR1 PF02185.11 gi|159040911|ref|YP_001540163.1| - 0.013 15.2 14.1 0.57 9.9 0.9 4.0 1 1 2 3 3 3 0 Hr1 repeat Fzo_mitofusin PF04799.8 gi|159040911|ref|YP_001540163.1| - 0.013 14.9 6.7 0.5 9.7 1.7 2.4 1 1 1 2 2 2 0 fzo-like conserved region Laminin_II PF06009.7 gi|159040911|ref|YP_001540163.1| - 0.013 15.2 11.8 0.65 9.7 7.0 2.7 1 1 1 2 2 2 0 Laminin Domain II IMD PF08397.6 gi|159040911|ref|YP_001540163.1| - 0.014 14.6 3.8 0.024 13.9 2.6 1.5 1 1 0 1 1 1 0 IRSp53/MIM homology domain AAA_32 PF13654.1 gi|159040911|ref|YP_001540163.1| - 0.015 14.0 10.0 0.11 11.0 1.0 2.0 1 1 1 2 2 2 0 AAA domain TACC PF05010.9 gi|159040911|ref|YP_001540163.1| - 0.016 14.9 7.6 0.087 12.5 1.6 2.3 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) DUF848 PF05852.6 gi|159040911|ref|YP_001540163.1| - 0.016 15.0 12.2 0.17 11.7 0.8 2.3 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Rad50_zn_hook PF04423.9 gi|159040911|ref|YP_001540163.1| - 0.018 14.4 3.4 30 4.1 0.1 4.3 1 1 2 4 4 4 0 Rad50 zinc hook motif MtrG PF04210.8 gi|159040911|ref|YP_001540163.1| - 0.018 14.6 13.2 2.4 7.8 1.4 4.4 1 1 2 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G MbeD_MobD PF04899.7 gi|159040911|ref|YP_001540163.1| - 0.019 14.8 8.3 0.99 9.3 0.2 4.1 2 1 2 4 4 3 0 MbeD/MobD like COG5 PF10392.4 gi|159040911|ref|YP_001540163.1| - 0.02 14.8 5.9 0.52 10.2 0.6 2.6 1 1 1 2 2 2 0 Golgi transport complex subunit 5 ISG65-75 PF11727.3 gi|159040911|ref|YP_001540163.1| - 0.02 13.9 5.9 0.018 14.0 1.5 1.8 1 1 1 2 2 2 0 Invariant surface glycoprotein Alpha-E PF04168.7 gi|159040911|ref|YP_001540163.1| - 0.022 14.1 3.8 0.028 13.7 0.4 2.0 1 1 1 2 2 2 0 A predicted alpha-helical domain with a conserved ER motif. BLOC1_2 PF10046.4 gi|159040911|ref|YP_001540163.1| - 0.024 14.7 9.2 0.1 12.7 5.7 2.4 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.14 gi|159040911|ref|YP_001540163.1| - 0.026 12.3 7.7 0.061 11.1 4.1 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family TBPIP PF07106.8 gi|159040911|ref|YP_001540163.1| - 0.026 14.0 10.5 0.023 14.2 5.9 1.8 1 1 1 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1993 PF09351.5 gi|159040911|ref|YP_001540163.1| - 0.029 14.3 0.5 1.6 8.6 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) HSCB_C PF07743.8 gi|159040911|ref|YP_001540163.1| - 0.031 14.7 10.6 1.3 9.5 0.7 3.5 2 1 1 3 3 2 0 HSCB C-terminal oligomerisation domain Hemerythrin PF01814.18 gi|159040911|ref|YP_001540163.1| - 0.031 14.4 1.0 0.25 11.4 0.3 2.2 1 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Lipoprotein_7 PF01540.11 gi|159040911|ref|YP_001540163.1| - 0.031 13.3 7.0 0.68 8.9 3.6 1.9 1 1 1 2 2 2 0 Adhesin lipoprotein Pox_F11 PF04943.7 gi|159040911|ref|YP_001540163.1| - 0.032 13.0 10.7 0.21 10.4 7.4 2.0 1 1 0 1 1 1 0 Poxvirus F11 protein Hemagglutinin PF00509.13 gi|159040911|ref|YP_001540163.1| - 0.034 12.2 12.1 0.59 8.2 3.6 2.2 1 1 1 2 2 2 0 Haemagglutinin DUF148 PF02520.12 gi|159040911|ref|YP_001540163.1| - 0.043 13.6 8.3 0.18 11.6 2.2 2.7 1 1 2 3 3 2 0 Domain of unknown function DUF148 Lge1 PF11488.3 gi|159040911|ref|YP_001540163.1| - 0.043 13.9 7.4 1.4 9.1 0.0 3.4 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 Phage_GP20 PF06810.6 gi|159040911|ref|YP_001540163.1| - 0.045 13.1 10.4 0.26 10.7 1.7 2.4 1 1 1 2 2 2 0 Phage minor structural protein GP20 PLAC9 PF15205.1 gi|159040911|ref|YP_001540163.1| - 0.045 14.0 0.2 3.4 8.0 0.0 2.7 1 1 1 2 2 2 0 Placenta-specific protein 9 YjcZ PF13990.1 gi|159040911|ref|YP_001540163.1| - 0.046 12.8 5.3 0.62 9.1 0.5 2.6 1 1 2 3 3 3 0 YjcZ-like protein ALMT PF11744.3 gi|159040911|ref|YP_001540163.1| - 0.054 12.1 4.1 0.095 11.3 2.8 1.5 1 1 0 1 1 1 0 Aluminium activated malate transporter GLE1 PF07817.8 gi|159040911|ref|YP_001540163.1| - 0.054 12.4 3.8 0.37 9.6 0.2 2.1 1 1 1 2 2 2 0 GLE1-like protein Tho2 PF11262.3 gi|159040911|ref|YP_001540163.1| - 0.056 12.4 6.5 0.041 12.9 3.2 1.7 1 1 0 2 2 1 0 Transcription factor/nuclear export subunit protein 2 Occludin_ELL PF07303.8 gi|159040911|ref|YP_001540163.1| - 0.058 14.1 5.2 14 6.4 2.2 3.6 1 1 1 2 2 2 0 Occludin homology domain AKNA PF12443.3 gi|159040911|ref|YP_001540163.1| - 0.064 13.2 5.0 4 7.5 1.0 3.5 1 1 1 2 2 2 0 AT-hook-containing transcription factor Mst1_SARAH PF11629.3 gi|159040911|ref|YP_001540163.1| - 0.064 13.0 10.3 0.7 9.7 0.6 4.0 3 1 2 5 5 4 0 C terminal SARAH domain of Mst1 DUF4351 PF14261.1 gi|159040911|ref|YP_001540163.1| - 0.074 12.9 7.5 4.4 7.2 0.4 4.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4351) ACCA PF03255.9 gi|159040911|ref|YP_001540163.1| - 0.081 12.4 7.2 1 8.9 0.7 2.6 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Prominin PF05478.6 gi|159040911|ref|YP_001540163.1| - 0.083 10.4 7.0 0.044 11.3 2.7 1.7 1 1 1 2 2 2 0 Prominin SlyX PF04102.7 gi|159040911|ref|YP_001540163.1| - 0.084 13.2 18.3 1.7 9.1 3.5 4.3 1 1 2 3 3 3 0 SlyX CobN-Mg_chel PF02514.11 gi|159040911|ref|YP_001540163.1| - 0.09 10.1 2.9 0.12 9.7 2.0 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF1484 PF07363.6 gi|159040911|ref|YP_001540163.1| - 0.091 13.1 1.0 0.48 10.8 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1484) TMPIT PF07851.8 gi|159040911|ref|YP_001540163.1| - 0.091 11.8 5.0 0.18 10.8 3.2 1.6 1 1 0 1 1 1 0 TMPIT-like protein THOC7 PF05615.8 gi|159040911|ref|YP_001540163.1| - 0.092 13.0 12.6 2.2 8.5 3.8 2.7 1 1 1 2 2 2 0 Tho complex subunit 7 MIS13 PF08202.6 gi|159040911|ref|YP_001540163.1| - 0.1 11.6 9.9 1 8.3 6.8 2.2 1 1 0 1 1 1 0 Mis12-Mtw1 protein family PDDEXK_1 PF12705.2 gi|159040911|ref|YP_001540163.1| - 0.11 11.8 0.8 0.16 11.3 0.6 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily HemX PF04375.9 gi|159040911|ref|YP_001540163.1| - 0.12 10.9 9.0 0.44 9.0 6.1 1.9 1 1 0 1 1 1 0 HemX Nup54 PF13874.1 gi|159040911|ref|YP_001540163.1| - 0.13 11.8 13.5 3.3 7.3 0.7 3.3 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 DUF4200 PF13863.1 gi|159040911|ref|YP_001540163.1| - 0.14 12.0 10.0 2.6 7.9 7.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Lipoprotein_6 PF01441.14 gi|159040911|ref|YP_001540163.1| - 0.14 11.9 4.0 0.16 11.7 1.1 1.9 1 1 2 3 3 3 0 Lipoprotein Tropomyosin_1 PF12718.2 gi|159040911|ref|YP_001540163.1| - 0.15 11.9 10.8 0.34 10.7 7.5 1.7 1 1 0 1 1 1 0 Tropomyosin like IncA PF04156.9 gi|159040911|ref|YP_001540163.1| - 0.15 11.6 11.1 0.6 9.6 7.6 2.0 1 1 0 1 1 1 0 IncA protein WXG100 PF06013.7 gi|159040911|ref|YP_001540163.1| - 0.16 11.9 2.4 25 4.9 0.4 3.2 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Sec2p PF06428.6 gi|159040911|ref|YP_001540163.1| - 0.16 11.7 11.4 12 5.7 4.0 3.3 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Reo_sigmaC PF04582.7 gi|159040911|ref|YP_001540163.1| - 0.16 11.0 7.3 0.33 10.1 5.1 1.4 1 1 0 1 1 1 0 Reovirus sigma C capsid protein NYD-SP28 PF14772.1 gi|159040911|ref|YP_001540163.1| - 0.17 11.9 13.1 0.38 10.8 8.4 2.0 1 1 1 2 2 2 0 Sperm tail SF-assemblin PF06705.6 gi|159040911|ref|YP_001540163.1| - 0.18 10.9 18.1 0.2 10.7 12.0 1.4 1 1 0 1 1 1 0 SF-assemblin/beta giardin LTXXQ PF07813.7 gi|159040911|ref|YP_001540163.1| - 0.19 12.2 2.0 1.5 9.3 1.4 2.5 1 1 0 1 1 1 0 LTXXQ motif family protein Phage_Mu_Gam PF07352.7 gi|159040911|ref|YP_001540163.1| - 0.19 11.2 8.7 0.57 9.6 0.5 2.5 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein DUF16 PF01519.11 gi|159040911|ref|YP_001540163.1| - 0.19 11.9 11.2 0.52 10.5 1.0 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4404 PF14357.1 gi|159040911|ref|YP_001540163.1| - 0.19 12.1 9.9 0.092 13.1 0.7 3.2 1 1 2 3 3 2 0 Domain of unknown function (DUF4404) GP41 PF00517.12 gi|159040911|ref|YP_001540163.1| - 0.2 11.1 8.3 1.7 8.1 0.8 3.1 1 1 2 3 3 3 0 Retroviral envelope protein NTP_transf_4 PF13562.1 gi|159040911|ref|YP_001540163.1| - 0.22 11.1 3.1 0.77 9.3 2.2 1.8 1 1 0 1 1 1 0 Sugar nucleotidyl transferase MscS_porin PF12795.2 gi|159040911|ref|YP_001540163.1| - 0.23 10.7 14.1 0.33 10.2 5.5 3.1 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain HAUS-augmin3 PF14932.1 gi|159040911|ref|YP_001540163.1| - 0.25 10.4 10.6 0.6 9.2 7.3 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 MtrB PF05440.7 gi|159040911|ref|YP_001540163.1| - 0.26 11.3 3.7 22 5.1 0.2 3.4 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B Peptidase_M75 PF09375.5 gi|159040911|ref|YP_001540163.1| - 0.28 10.4 2.5 0.87 8.8 1.8 1.8 1 1 1 2 2 2 0 Imelysin Vip3A_N PF12495.3 gi|159040911|ref|YP_001540163.1| - 0.29 10.8 9.5 0.65 9.6 6.1 1.9 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal Allexi_40kDa PF05549.6 gi|159040911|ref|YP_001540163.1| - 0.3 10.3 9.9 0.48 9.6 4.5 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF745 PF05335.8 gi|159040911|ref|YP_001540163.1| - 0.3 10.5 4.2 0.18 11.3 1.4 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF745) RPW8 PF05659.6 gi|159040911|ref|YP_001540163.1| - 0.31 10.5 11.5 1.9 8.0 1.0 3.4 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Phage_Gp23 PF10669.4 gi|159040911|ref|YP_001540163.1| - 0.31 11.1 14.7 0.73 9.9 1.3 3.2 1 1 1 3 3 2 0 Protein gp23 (Bacteriophage A118) DUF1351 PF07083.6 gi|159040911|ref|YP_001540163.1| - 0.32 10.5 9.8 2.2 7.8 2.7 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1351) LUC7 PF03194.10 gi|159040911|ref|YP_001540163.1| - 0.33 10.4 9.8 0.31 10.5 5.9 1.7 1 1 0 1 1 1 0 LUC7 N_terminus Peripla_BP_2 PF01497.13 gi|159040911|ref|YP_001540163.1| - 0.33 10.0 6.0 7.2 5.6 0.1 3.0 1 1 1 2 2 2 0 Periplasmic binding protein DUF2203 PF09969.4 gi|159040911|ref|YP_001540163.1| - 0.33 11.1 6.7 0.61 10.3 1.3 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF842 PF05811.8 gi|159040911|ref|YP_001540163.1| - 0.35 10.3 3.4 0.13 11.7 0.5 1.7 2 0 0 2 2 1 0 Eukaryotic protein of unknown function (DUF842) DUF3373 PF11853.3 gi|159040911|ref|YP_001540163.1| - 0.42 9.0 5.0 0.84 8.0 3.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) DUF1020 PF06255.8 gi|159040911|ref|YP_001540163.1| - 0.47 9.6 2.6 2.2 7.4 1.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1020) DUF4226 PF10774.4 gi|159040911|ref|YP_001540163.1| - 0.49 10.4 6.2 0.94 9.5 0.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4226) PMC2NT PF08066.7 gi|159040911|ref|YP_001540163.1| - 0.5 10.7 11.1 0.17 12.2 4.3 2.6 1 1 3 4 4 3 0 PMC2NT (NUC016) domain DUF3552 PF12072.3 gi|159040911|ref|YP_001540163.1| - 0.51 9.5 14.8 0.41 9.8 9.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DUF2730 PF10805.3 gi|159040911|ref|YP_001540163.1| - 0.52 10.0 5.8 6.1 6.6 2.9 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) OmpH PF03938.9 gi|159040911|ref|YP_001540163.1| - 0.57 10.0 6.6 2 8.3 4.6 2.1 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4140 PF13600.1 gi|159040911|ref|YP_001540163.1| - 0.58 10.6 10.3 16 6.0 4.0 3.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF2968 PF11180.3 gi|159040911|ref|YP_001540163.1| - 0.61 9.4 8.3 2.3 7.5 2.2 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) AATF-Che1 PF13339.1 gi|159040911|ref|YP_001540163.1| - 0.64 10.1 7.3 0.85 9.7 2.8 2.3 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Corona_S2 PF01601.11 gi|159040911|ref|YP_001540163.1| - 0.66 8.0 4.3 1.1 7.2 2.6 1.6 1 1 0 1 1 1 0 Coronavirus S2 glycoprotein FemAB PF02388.11 gi|159040911|ref|YP_001540163.1| - 0.67 8.5 5.8 0.75 8.4 3.4 1.6 1 1 1 2 2 2 0 FemAB family MRP-L51 PF10244.4 gi|159040911|ref|YP_001540163.1| - 0.69 9.9 4.3 13 5.8 0.4 2.9 1 1 3 4 4 3 0 Mitochondrial ribosomal subunit KH_5 PF13184.1 gi|159040911|ref|YP_001540163.1| - 0.72 9.6 11.7 3.9 7.3 1.6 3.7 1 1 1 2 2 2 0 NusA-like KH domain Med21 PF11221.3 gi|159040911|ref|YP_001540163.1| - 0.74 9.7 8.7 3.3 7.6 1.8 3.2 1 1 2 3 3 3 0 Subunit 21 of Mediator complex TMF_DNA_bd PF12329.3 gi|159040911|ref|YP_001540163.1| - 0.8 9.5 13.0 1.8 8.4 4.3 3.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding YtxH PF12732.2 gi|159040911|ref|YP_001540163.1| - 0.8 10.1 4.4 1.9 8.9 1.2 2.5 1 1 1 2 2 2 0 YtxH-like protein DUF2175 PF09943.4 gi|159040911|ref|YP_001540163.1| - 0.8 9.7 7.4 3.4 7.7 1.4 2.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) Prefoldin PF02996.12 gi|159040911|ref|YP_001540163.1| - 0.87 9.2 12.4 1.2 8.8 1.1 3.4 2 1 1 4 4 2 0 Prefoldin subunit Syntaxin_2 PF14523.1 gi|159040911|ref|YP_001540163.1| - 0.87 9.6 13.1 33 4.5 9.1 2.8 1 1 0 1 1 1 0 Syntaxin-like protein DUF4279 PF14106.1 gi|159040911|ref|YP_001540163.1| - 0.88 9.4 3.6 2.6 7.9 1.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) APG6 PF04111.7 gi|159040911|ref|YP_001540163.1| - 0.89 8.5 7.8 1.2 8.0 5.4 1.4 1 1 0 1 1 1 0 Autophagy protein Apg6 DASH_Duo1 PF08651.5 gi|159040911|ref|YP_001540163.1| - 1 9.0 9.1 28 4.3 0.0 3.6 1 1 1 2 2 2 0 DASH complex subunit Duo1 DUF2746 PF10874.3 gi|159040911|ref|YP_001540163.1| - 1.2 9.3 17.0 8.5 6.6 0.6 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF2746) DSX_dimer PF08828.5 gi|159040911|ref|YP_001540163.1| - 1.2 8.6 5.8 6.2 6.4 0.3 3.6 1 1 2 3 3 3 0 Doublesex dimerisation domain DUF972 PF06156.8 gi|159040911|ref|YP_001540163.1| - 1.2 9.4 10.7 16 5.8 5.9 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) HAP1_N PF04849.8 gi|159040911|ref|YP_001540163.1| - 1.2 7.9 15.8 2.6 6.8 0.5 2.2 1 1 1 2 2 2 0 HAP1 N-terminal conserved region DUF2450 PF10475.4 gi|159040911|ref|YP_001540163.1| - 1.3 7.8 8.7 1.5 7.6 5.5 1.5 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) Kinetocho_Slk19 PF12709.2 gi|159040911|ref|YP_001540163.1| - 1.3 9.1 7.4 7 6.7 0.9 3.0 1 1 1 2 2 2 0 Central kinetochore-associated LXG PF04740.7 gi|159040911|ref|YP_001540163.1| - 1.3 8.7 9.0 1.4 8.6 5.2 1.7 1 1 0 1 1 1 0 LXG domain of WXG superfamily COG2 PF06148.6 gi|159040911|ref|YP_001540163.1| - 1.3 8.8 12.6 12 5.7 1.8 3.2 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 PRKCSH-like PF12999.2 gi|159040911|ref|YP_001540163.1| - 1.4 8.4 8.2 2.8 7.4 0.8 2.2 1 1 1 2 2 2 0 Glucosidase II beta subunit-like Snapin_Pallidin PF14712.1 gi|159040911|ref|YP_001540163.1| - 1.4 9.2 14.2 2.4 8.5 6.1 3.1 1 1 1 2 2 2 0 Snapin/Pallidin HWE_HK PF07536.9 gi|159040911|ref|YP_001540163.1| - 1.5 9.3 5.3 2.7 8.4 0.3 3.2 1 1 2 3 3 2 0 HWE histidine kinase DUF4446 PF14584.1 gi|159040911|ref|YP_001540163.1| - 1.8 8.3 9.6 2.8 7.7 3.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF2200 PF09966.4 gi|159040911|ref|YP_001540163.1| - 2 8.3 6.2 3.9 7.3 0.5 3.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2200) SPX PF03105.14 gi|159040911|ref|YP_001540163.1| - 2 8.0 6.0 4.3 7.0 4.2 1.5 1 1 0 1 1 1 0 SPX domain Fib_alpha PF08702.5 gi|159040911|ref|YP_001540163.1| - 2.1 8.4 14.4 20 5.2 9.5 2.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Microtub_assoc PF07989.6 gi|159040911|ref|YP_001540163.1| - 2.2 8.1 9.4 1.7 8.5 1.9 3.3 2 1 1 3 3 2 0 Microtubule associated zf-ZPR1 PF03367.8 gi|159040911|ref|YP_001540163.1| - 2.2 7.4 4.9 3.9 6.5 0.7 2.3 1 1 1 2 2 2 0 ZPR1 zinc-finger domain DUF4320 PF14208.1 gi|159040911|ref|YP_001540163.1| - 2.2 8.2 4.6 2.4 8.1 0.4 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4320) DUF3422 PF11902.3 gi|159040911|ref|YP_001540163.1| - 2.4 6.9 10.2 13 4.5 7.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3422) DUF1192 PF06698.6 gi|159040911|ref|YP_001540163.1| - 2.6 7.9 9.7 16 5.3 0.6 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF1192) Rota_NSP4 PF01452.11 gi|159040911|ref|YP_001540163.1| - 2.9 7.1 12.4 6.7 6.0 6.3 2.1 1 1 1 2 2 2 0 Rotavirus non structural protein IATP PF04568.7 gi|159040911|ref|YP_001540163.1| - 3 7.9 5.2 15 5.6 0.2 3.0 1 1 2 3 3 3 0 Mitochondrial ATPase inhibitor, IATP Cep57_MT_bd PF06657.8 gi|159040911|ref|YP_001540163.1| - 3 7.8 13.3 16 5.5 0.1 4.6 3 1 2 5 5 5 0 Centrosome microtubule-binding domain of Cep57 ECM11 PF15463.1 gi|159040911|ref|YP_001540163.1| - 3.2 8.0 9.5 33 4.7 1.1 2.9 1 1 2 3 3 3 0 Extracellular mutant protein 11 EIAV_Rev PF11129.3 gi|159040911|ref|YP_001540163.1| - 3.5 7.6 6.3 7.3 6.5 0.9 2.4 1 1 1 2 2 2 0 Rev protein of equine infectious anaemia virus CHD5 PF04420.9 gi|159040911|ref|YP_001540163.1| - 3.5 7.2 12.3 3 7.4 1.3 2.9 2 2 1 3 3 3 0 CHD5-like protein ING PF12998.2 gi|159040911|ref|YP_001540163.1| - 3.8 7.8 13.1 32 4.8 7.9 2.9 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding DivIC PF04977.10 gi|159040911|ref|YP_001540163.1| - 3.8 7.0 18.0 3.3 7.2 2.3 4.2 2 1 1 3 3 2 0 Septum formation initiator DUF1515 PF07439.6 gi|159040911|ref|YP_001540163.1| - 5.1 6.9 12.5 37 4.1 3.5 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) TPR_MLP1_2 PF07926.7 gi|159040911|ref|YP_001540163.1| - 5.4 6.7 14.7 2.1 8.0 1.1 2.7 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein FlxA PF14282.1 gi|159040911|ref|YP_001540163.1| - 7.1 6.6 15.5 1.2 9.0 0.8 2.8 2 1 1 3 3 2 0 FlxA-like protein L31 PF09784.4 gi|159040911|ref|YP_001540163.1| - 7.2 6.7 11.9 28 4.8 1.5 3.2 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L31 DUF1640 PF07798.6 gi|159040911|ref|YP_001540163.1| - 7.6 6.5 16.3 7 6.6 10.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) MerR-DNA-bind PF09278.6 gi|159040911|ref|YP_001540163.1| - 8.2 6.9 12.7 8.2 6.9 2.4 3.9 2 1 1 3 3 2 0 MerR, DNA binding Sugar_tr PF00083.19 gi|159040912|ref|YP_001540164.1| - 6.7e-15 54.6 7.9 6.7e-15 54.6 5.5 2.6 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|159040912|ref|YP_001540164.1| - 9.6e-12 44.2 45.5 9.6e-12 44.2 31.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily PfkB PF00294.19 gi|159040913|ref|YP_001540165.1| - 8.9e-43 146.5 0.1 9.9e-43 146.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF2953 PF11167.3 gi|159040913|ref|YP_001540165.1| - 0.0051 16.6 0.3 0.013 15.4 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Phlebovirus_NSM PF07246.6 gi|159040915|ref|YP_001540167.1| - 0.094 11.8 0.8 0.1 11.7 0.5 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M TM2 PF05154.11 gi|159040915|ref|YP_001540167.1| - 0.3 11.3 0.3 0.3 11.3 0.2 2.0 2 0 0 2 2 2 0 TM2 domain Chordopox_A33R PF05966.7 gi|159040915|ref|YP_001540167.1| - 0.38 9.4 2.2 0.42 9.3 1.5 1.1 1 0 0 1 1 1 0 Chordopoxvirus A33R protein DUF2583 PF10762.4 gi|159040915|ref|YP_001540167.1| - 4.9 7.3 5.6 1.6 8.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) SK_channel PF03530.9 gi|159040916|ref|YP_001540168.1| - 0.00026 20.8 0.5 0.00031 20.5 0.4 1.1 1 0 0 1 1 1 1 Calcium-activated SK potassium channel Pox_A14 PF05767.7 gi|159040916|ref|YP_001540168.1| - 0.008 16.1 5.6 0.015 15.2 3.9 1.5 1 1 0 1 1 1 1 Poxvirus virion envelope protein A14 Claudin_2 PF13903.1 gi|159040916|ref|YP_001540168.1| - 0.0096 15.6 2.6 0.013 15.2 1.6 1.3 1 1 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction DUF4203 PF13886.1 gi|159040916|ref|YP_001540168.1| - 0.011 15.2 5.8 0.013 14.9 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Yip1 PF04893.12 gi|159040916|ref|YP_001540168.1| - 0.015 14.7 4.2 0.018 14.5 2.9 1.1 1 0 0 1 1 1 0 Yip1 domain DUF4190 PF13828.1 gi|159040916|ref|YP_001540168.1| - 0.019 14.5 0.3 0.019 14.5 0.2 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) CYSTM PF12734.2 gi|159040916|ref|YP_001540168.1| - 0.039 14.0 0.1 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Cysteine-rich TM module stress tolerance DUF2208 PF09973.4 gi|159040916|ref|YP_001540168.1| - 0.04 13.1 2.7 0.047 12.9 1.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Gemini_mov PF01708.11 gi|159040916|ref|YP_001540168.1| - 0.049 13.1 0.1 0.049 13.1 0.1 1.7 2 0 0 2 2 2 0 Geminivirus putative movement protein SUR7 PF06687.7 gi|159040916|ref|YP_001540168.1| - 0.11 12.0 0.8 0.14 11.7 0.6 1.2 1 0 0 1 1 1 0 SUR7/PalI family DUF2207 PF09972.4 gi|159040916|ref|YP_001540168.1| - 0.11 11.0 1.8 0.12 10.9 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Herpes_US9 PF06072.6 gi|159040916|ref|YP_001540168.1| - 0.15 11.8 1.4 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 DUF3040 PF11239.3 gi|159040916|ref|YP_001540168.1| - 0.62 10.1 9.3 0.28 11.2 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) YIF1 PF03878.10 gi|159040916|ref|YP_001540168.1| - 0.99 8.4 4.2 1.2 8.2 2.9 1.1 1 0 0 1 1 1 0 YIF1 TrbC PF04956.8 gi|159040916|ref|YP_001540168.1| - 1.3 9.0 6.5 2.7 8.0 4.5 1.5 1 1 0 1 1 1 0 TrbC/VIRB2 family ABC2_membrane_2 PF12679.2 gi|159040916|ref|YP_001540168.1| - 1.8 7.3 7.7 2.3 7.0 5.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MerC PF03203.9 gi|159040916|ref|YP_001540168.1| - 2.2 8.6 7.8 6.2 7.2 0.8 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein Tetraspannin PF00335.15 gi|159040916|ref|YP_001540168.1| - 6.5 5.9 8.8 15 4.8 6.1 1.5 1 1 0 1 1 1 0 Tetraspanin family CTP_synth_N PF06418.9 gi|159040917|ref|YP_001540169.1| - 6.1e-122 406.0 0.1 8e-122 405.6 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|159040917|ref|YP_001540169.1| - 4.6e-45 153.4 0.0 9.2e-45 152.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|159040917|ref|YP_001540169.1| - 5.2e-11 42.4 0.0 9.1e-11 41.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|159040917|ref|YP_001540169.1| - 6.6e-07 28.9 0.0 1.1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1884 PF08967.5 gi|159040917|ref|YP_001540169.1| - 0.021 14.9 0.0 12 6.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) FAA_hydrolase PF01557.13 gi|159040918|ref|YP_001540170.1| - 2.1e-68 230.0 0.0 3.2e-68 229.4 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF3820 PF12843.2 gi|159040918|ref|YP_001540170.1| - 0.05 13.2 0.0 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3820) Glyco_tranf_2_3 PF13641.1 gi|159040919|ref|YP_001540171.1| - 4.3e-31 108.4 0.0 6.4e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|159040919|ref|YP_001540171.1| - 1.4e-21 77.0 0.4 1.4e-21 77.0 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|159040919|ref|YP_001540171.1| - 7e-18 64.8 0.0 9.7e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|159040919|ref|YP_001540171.1| - 2.5e-05 23.5 0.0 3.4e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|159040919|ref|YP_001540171.1| - 7.5e-05 22.0 0.1 0.00017 20.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 DUF3302 PF11742.3 gi|159040919|ref|YP_001540171.1| - 0.024 14.4 0.8 0.09 12.6 0.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3302) WD40_alt PF14077.1 gi|159040919|ref|YP_001540171.1| - 0.062 12.9 0.3 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif tRNA-synt_2b PF00587.20 gi|159040920|ref|YP_001540172.1| - 8e-47 159.0 0.1 1e-46 158.6 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|159040920|ref|YP_001540172.1| - 4.5e-22 77.7 0.3 1e-21 76.6 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain zinc_ribbon_2 PF13240.1 gi|159040920|ref|YP_001540172.1| - 0.008 15.6 0.7 4 7.0 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|159040920|ref|YP_001540172.1| - 0.01 15.0 0.5 3.4 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|159040920|ref|YP_001540172.1| - 0.074 12.6 2.8 1.7 8.3 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159040920|ref|YP_001540172.1| - 0.076 12.7 2.6 1.7 8.4 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF678 PF05077.7 gi|159040920|ref|YP_001540172.1| - 0.095 12.6 0.1 0.52 10.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF678) zf-C2HC_2 PF13913.1 gi|159040920|ref|YP_001540172.1| - 0.11 12.2 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 zinc-finger of a C2HC-type ECH PF00378.15 gi|159040921|ref|YP_001540173.1| - 2.4e-70 236.4 0.0 3.4e-70 235.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|159040921|ref|YP_001540173.1| - 6.6e-67 224.6 0.0 1e-66 224.0 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|159040921|ref|YP_001540173.1| - 3.8e-41 139.4 0.5 9.2e-25 86.8 0.1 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|159040921|ref|YP_001540173.1| - 4.3e-07 29.9 0.0 1.3e-06 28.3 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|159040921|ref|YP_001540173.1| - 2.1e-06 27.5 0.0 6.2e-06 26.0 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|159040921|ref|YP_001540173.1| - 0.0004 20.7 0.4 0.0025 18.1 0.3 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|159040921|ref|YP_001540173.1| - 0.088 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SDH_sah PF01972.11 gi|159040921|ref|YP_001540173.1| - 0.088 11.5 0.0 0.23 10.2 0.0 1.6 1 0 0 1 1 1 0 Serine dehydrogenase proteinase DFP PF04127.10 gi|159040921|ref|YP_001540173.1| - 0.15 11.7 0.5 0.72 9.4 0.2 2.2 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein AFOR_C PF01314.13 gi|159040922|ref|YP_001540174.1| - 3.5e-125 417.6 0.0 4.3e-125 417.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|159040922|ref|YP_001540174.1| - 5.3e-70 234.8 0.0 7.7e-70 234.3 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HobA PF12163.3 gi|159040923|ref|YP_001540175.1| - 0.0042 16.3 0.0 0.0085 15.3 0.0 1.5 1 0 0 1 1 1 1 DNA replication regulator PhosphMutase PF10143.4 gi|159040924|ref|YP_001540176.1| - 1.1e-48 165.1 0.0 1.9e-48 164.3 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|159040924|ref|YP_001540176.1| - 1.5e-31 109.7 0.0 1.8e-31 109.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Prefoldin_2 PF01920.15 gi|159040925|ref|YP_001540177.1| - 2.7e-21 75.2 10.7 3.1e-21 75.1 7.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|159040925|ref|YP_001540177.1| - 0.00069 19.2 9.5 0.0014 18.2 1.9 2.1 1 1 1 2 2 2 1 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|159040925|ref|YP_001540177.1| - 0.0095 15.7 7.8 0.61 9.9 0.2 2.0 2 0 0 2 2 2 2 Tropomyosin like TPR_MLP1_2 PF07926.7 gi|159040925|ref|YP_001540177.1| - 0.023 14.4 9.1 0.054 13.2 6.3 1.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.5 gi|159040925|ref|YP_001540177.1| - 0.026 14.6 3.1 0.033 14.3 2.1 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Enkurin PF13864.1 gi|159040925|ref|YP_001540177.1| - 0.039 14.1 5.0 2.6 8.2 0.6 2.3 2 1 0 2 2 2 0 Calmodulin-binding EzrA PF06160.7 gi|159040925|ref|YP_001540177.1| - 0.05 11.7 6.1 0.08 11.1 4.2 1.3 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA CCDC155 PF14662.1 gi|159040925|ref|YP_001540177.1| - 0.088 12.4 9.7 0.1 12.1 6.7 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 Flagellin_N PF00669.15 gi|159040925|ref|YP_001540177.1| - 0.13 12.0 2.4 0.25 11.1 0.2 2.0 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region Filament PF00038.16 gi|159040925|ref|YP_001540177.1| - 0.2 11.0 10.0 0.17 11.3 1.7 2.0 1 1 0 2 2 2 0 Intermediate filament protein Snapin_Pallidin PF14712.1 gi|159040925|ref|YP_001540177.1| - 0.23 11.7 9.6 2.2 8.6 0.3 2.3 2 1 0 2 2 2 0 Snapin/Pallidin DUF1465 PF07323.7 gi|159040925|ref|YP_001540177.1| - 0.38 10.3 5.0 0.65 9.5 0.5 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1465) HTH_1 PF00126.22 gi|159040925|ref|YP_001540177.1| - 0.76 9.5 2.8 12 5.7 0.3 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DivIVA PF05103.8 gi|159040925|ref|YP_001540177.1| - 0.76 9.8 5.7 3.5 7.7 0.3 2.1 1 1 1 2 2 2 0 DivIVA protein FlaC_arch PF05377.6 gi|159040925|ref|YP_001540177.1| - 0.99 9.3 6.7 0.6 10.0 1.6 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.1 gi|159040925|ref|YP_001540177.1| - 1.2 9.6 8.5 6.5 7.2 0.6 2.3 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Nsp1_C PF05064.8 gi|159040925|ref|YP_001540177.1| - 1.7 8.3 10.6 0.55 9.8 1.9 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF3552 PF12072.3 gi|159040925|ref|YP_001540177.1| - 1.7 7.8 9.2 0.27 10.4 1.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) bZIP_1 PF00170.16 gi|159040925|ref|YP_001540177.1| - 1.9 8.5 12.1 1.4 8.9 1.6 2.7 3 0 0 3 3 3 0 bZIP transcription factor Viral_P18 PF04521.8 gi|159040925|ref|YP_001540177.1| - 2 7.8 7.3 4 6.9 1.1 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein APG6 PF04111.7 gi|159040925|ref|YP_001540177.1| - 2.9 6.8 9.6 10 5.0 6.6 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 Snf7 PF03357.16 gi|159040925|ref|YP_001540177.1| - 3.2 7.1 9.5 2.1 7.6 1.9 2.4 1 1 0 2 2 2 0 Snf7 Spc7 PF08317.6 gi|159040925|ref|YP_001540177.1| - 4 6.0 9.9 17 3.9 6.9 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|159040925|ref|YP_001540177.1| - 4.6 4.9 6.6 8.1 4.1 4.6 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GP20 PF06810.6 gi|159040925|ref|YP_001540177.1| - 5.2 6.5 13.5 4.3 6.7 3.7 2.3 1 1 1 2 2 2 0 Phage minor structural protein GP20 Cortex-I_coil PF09304.5 gi|159040925|ref|YP_001540177.1| - 5.5 7.0 12.4 3.4 7.7 3.1 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil NTR2 PF15458.1 gi|159040925|ref|YP_001540177.1| - 9.1 5.4 11.5 4.7 6.3 3.9 2.0 2 0 0 2 2 2 0 Nineteen complex-related protein 2 ATP-synt_ab PF00006.20 gi|159040926|ref|YP_001540178.1| - 1.8e-61 207.4 0.0 2.4e-61 206.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|159040926|ref|YP_001540178.1| - 3.4e-09 37.1 0.0 5.7e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|159040926|ref|YP_001540178.1| - 3.1e-07 30.5 0.6 5.4e-07 29.7 0.4 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Met_10 PF02475.11 gi|159040927|ref|YP_001540179.1| - 2.5e-51 174.1 0.1 3.4e-51 173.6 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.11 gi|159040927|ref|YP_001540179.1| - 2.6e-06 26.6 0.0 4.6e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|159040927|ref|YP_001540179.1| - 0.00082 19.3 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159040927|ref|YP_001540179.1| - 0.0013 18.1 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|159040927|ref|YP_001540179.1| - 0.043 13.4 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|159040927|ref|YP_001540179.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF2153 PF09921.4 gi|159040928|ref|YP_001540180.1| - 5.7e-30 103.5 0.0 7.1e-30 103.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) tRNA_bind_2 PF13725.1 gi|159040928|ref|YP_001540180.1| - 0.067 13.3 0.1 0.42 10.7 0.0 2.1 1 1 0 1 1 1 0 Possible tRNA binding domain DAO PF01266.19 gi|159040929|ref|YP_001540181.1| - 1.7e-09 37.0 3.0 2.8e-08 33.0 2.0 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|159040929|ref|YP_001540181.1| - 3.7e-09 36.4 0.2 8.8e-09 35.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|159040929|ref|YP_001540181.1| - 1e-07 31.4 0.1 0.00019 20.6 0.1 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|159040929|ref|YP_001540181.1| - 4.5e-06 26.9 2.5 0.00028 21.2 0.7 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|159040929|ref|YP_001540181.1| - 5.8e-06 25.6 0.4 9.7e-06 24.9 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|159040929|ref|YP_001540181.1| - 2.4e-05 23.0 0.9 5.4e-05 21.8 0.6 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|159040929|ref|YP_001540181.1| - 4.7e-05 22.4 1.2 8.1e-05 21.6 0.5 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|159040929|ref|YP_001540181.1| - 0.0003 20.9 0.6 0.00049 20.2 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|159040929|ref|YP_001540181.1| - 0.00058 19.0 0.6 0.001 18.2 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|159040929|ref|YP_001540181.1| - 0.00076 19.4 0.2 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159040929|ref|YP_001540181.1| - 0.00093 18.1 1.0 0.00093 18.1 0.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|159040929|ref|YP_001540181.1| - 0.021 13.9 0.9 0.065 12.3 0.1 2.0 2 0 0 2 2 2 0 Thi4 family Trp_halogenase PF04820.9 gi|159040929|ref|YP_001540181.1| - 0.027 13.1 0.2 0.047 12.3 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase IlvN PF07991.7 gi|159040929|ref|YP_001540181.1| - 0.059 12.7 0.1 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain SHMT PF00464.14 gi|159040930|ref|YP_001540182.1| - 3e-69 233.3 0.7 3.6e-69 233.0 0.5 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|159040930|ref|YP_001540182.1| - 7.7e-14 51.5 0.1 1e-13 51.1 0.1 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|159040930|ref|YP_001540182.1| - 1.5e-08 33.9 0.0 3.9e-08 32.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|159040930|ref|YP_001540182.1| - 4.4e-06 25.6 0.0 0.00022 20.1 0.0 2.2 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|159040930|ref|YP_001540182.1| - 2.4e-05 23.5 0.0 3.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.8 gi|159040930|ref|YP_001540182.1| - 0.00027 19.8 0.0 0.0008 18.2 0.0 1.8 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase SecY PF00344.15 gi|159040930|ref|YP_001540182.1| - 0.051 12.5 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 SecY translocase tRNA_int_endo PF01974.12 gi|159040932|ref|YP_001540184.1| - 6.9e-24 83.4 0.1 1.1e-23 82.7 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|159040932|ref|YP_001540184.1| - 2.9e-18 65.1 0.1 4.4e-18 64.5 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|159040932|ref|YP_001540184.1| - 0.0018 17.6 0.1 0.0051 16.2 0.0 1.8 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term Flavin_Reduct PF01613.13 gi|159040933|ref|YP_001540185.1| - 3.5e-39 134.1 0.0 4e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CCG PF02754.11 gi|159040934|ref|YP_001540186.1| - 2.9e-08 33.5 0.0 3.6e-07 30.0 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain DUF3794 PF12673.2 gi|159040936|ref|YP_001540188.1| - 0.074 13.2 0.3 0.11 12.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3794) Acetyltransf_1 PF00583.19 gi|159040937|ref|YP_001540189.1| - 1.3e-09 37.9 0.1 2.1e-09 37.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|159040937|ref|YP_001540189.1| - 2e-05 24.6 0.1 3.2e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|159040937|ref|YP_001540189.1| - 8.8e-05 22.6 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159040937|ref|YP_001540189.1| - 0.00069 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|159040937|ref|YP_001540189.1| - 0.00076 19.4 0.1 0.00097 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|159040937|ref|YP_001540189.1| - 0.0033 17.5 0.0 0.004 17.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|159040937|ref|YP_001540189.1| - 0.0083 15.9 0.0 0.027 14.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|159040939|ref|YP_001540191.1| - 2.1e-19 69.3 0.1 4.3e-19 68.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|159040939|ref|YP_001540191.1| - 1e-11 45.1 0.1 2.4e-11 43.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|159040939|ref|YP_001540191.1| - 2.3e-10 40.5 0.0 4.6e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|159040939|ref|YP_001540191.1| - 2.5e-10 40.2 0.0 5.1e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159040939|ref|YP_001540191.1| - 9.7e-09 34.8 0.0 1.6e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|159040939|ref|YP_001540191.1| - 9e-08 32.1 0.0 1.8e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|159040939|ref|YP_001540191.1| - 1.8e-05 24.7 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|159040939|ref|YP_001540191.1| - 0.00018 21.5 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|159040939|ref|YP_001540191.1| - 0.00081 18.9 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Adenosine_kin PF04008.9 gi|159040939|ref|YP_001540191.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Adenosine specific kinase Acetyltransf_CG PF14542.1 gi|159040939|ref|YP_001540191.1| - 0.022 14.6 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|159040939|ref|YP_001540191.1| - 0.042 13.7 0.0 0.097 12.5 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GFO_IDH_MocA PF01408.17 gi|159040940|ref|YP_001540192.1| - 8e-25 87.6 0.1 1.3e-24 87.0 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159040940|ref|YP_001540192.1| - 2.8e-05 23.8 0.0 8.9e-05 22.2 0.0 1.8 1 1 1 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|159040940|ref|YP_001540192.1| - 0.0039 17.5 0.0 0.0074 16.6 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sua5_yciO_yrdC PF01300.13 gi|159040940|ref|YP_001540192.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Telomere recombination DUF981 PF06168.6 gi|159040941|ref|YP_001540193.1| - 1.2e-45 155.6 14.9 2.8e-45 154.4 10.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF981) Tetraspannin PF00335.15 gi|159040941|ref|YP_001540193.1| - 0.021 14.0 0.1 0.021 14.0 0.1 2.7 1 1 1 2 2 2 0 Tetraspanin family Bax1-I PF01027.15 gi|159040941|ref|YP_001540193.1| - 1.3 8.5 21.0 23 4.4 14.1 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 PALP PF00291.20 gi|159040942|ref|YP_001540194.1| - 3.7e-27 95.3 0.1 1.7e-25 89.8 0.1 2.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acid_phosphat_B PF03767.9 gi|159040943|ref|YP_001540195.1| - 1.5e-07 31.0 0.0 2.1e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) HAD_2 PF13419.1 gi|159040943|ref|YP_001540195.1| - 0.0002 21.6 0.3 0.21 11.7 0.0 2.1 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|159040943|ref|YP_001540195.1| - 0.0046 17.3 0.0 3.4 8.0 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|159040943|ref|YP_001540195.1| - 0.0048 16.7 0.0 0.0065 16.3 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2410 PF10307.4 gi|159040943|ref|YP_001540195.1| - 0.17 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2410) AMMECR1 PF01871.12 gi|159040944|ref|YP_001540196.1| - 1.2e-51 174.2 0.0 1.4e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 MacB_PCD PF12704.2 gi|159040945|ref|YP_001540197.1| - 0.0042 16.6 1.6 0.0065 16.0 1.1 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain ABC2_membrane PF01061.19 gi|159040947|ref|YP_001540199.1| - 8.5e-34 116.5 22.0 8.5e-34 116.5 15.3 2.2 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|159040947|ref|YP_001540199.1| - 4.2e-15 55.6 27.5 4.2e-15 55.6 19.0 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|159040947|ref|YP_001540199.1| - 1.7e-12 46.8 20.4 2e-12 46.5 14.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|159040947|ref|YP_001540199.1| - 1.3e-07 31.0 27.8 1.8e-07 30.5 19.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|159040947|ref|YP_001540199.1| - 0.072 12.3 22.4 0.044 13.0 12.2 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|159040948|ref|YP_001540200.1| - 3.4e-33 114.8 0.0 4.8e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159040948|ref|YP_001540200.1| - 2.3e-13 50.7 0.0 6e-09 36.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|159040948|ref|YP_001540200.1| - 3.3e-09 37.1 0.0 6.2e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|159040948|ref|YP_001540200.1| - 0.0022 18.3 0.1 0.0037 17.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|159040948|ref|YP_001540200.1| - 0.0075 15.7 0.1 0.013 15.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|159040948|ref|YP_001540200.1| - 0.014 14.8 0.2 0.034 13.5 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|159040948|ref|YP_001540200.1| - 0.026 13.5 0.0 0.92 8.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|159040948|ref|YP_001540200.1| - 0.06 13.5 1.1 0.51 10.5 0.4 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|159040948|ref|YP_001540200.1| - 0.16 12.1 0.3 0.53 10.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF2203 PF09969.4 gi|159040949|ref|YP_001540201.1| - 1.7e-10 41.1 0.0 7.7e-08 32.5 0.0 2.1 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2203) KH_1 PF00013.24 gi|159040950|ref|YP_001540202.1| - 2e-08 33.7 1.2 3.8e-08 32.8 0.1 2.0 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|159040950|ref|YP_001540202.1| - 6.8e-05 22.3 0.0 0.00018 21.0 0.0 1.8 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|159040950|ref|YP_001540202.1| - 0.00032 20.7 0.2 0.0013 18.8 0.0 2.1 2 0 0 2 2 2 1 S1 RNA binding domain KH_3 PF13014.1 gi|159040950|ref|YP_001540202.1| - 0.00084 18.9 0.7 0.0052 16.3 0.0 2.6 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|159040950|ref|YP_001540202.1| - 0.041 13.5 0.0 0.096 12.3 0.0 1.7 1 0 0 1 1 1 0 KH domain SRP19 PF01922.12 gi|159040951|ref|YP_001540203.1| - 4.3e-23 81.6 0.2 5e-23 81.5 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein ATP_bind_1 PF03029.12 gi|159040952|ref|YP_001540204.1| - 6e-55 186.3 0.0 6.7e-55 186.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|159040952|ref|YP_001540204.1| - 6e-07 30.3 0.0 9.6e-07 29.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|159040952|ref|YP_001540204.1| - 3.5e-06 26.0 0.0 3.1e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|159040952|ref|YP_001540204.1| - 4.2e-06 26.8 0.0 9.7e-06 25.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain GTP_EFTU PF00009.22 gi|159040952|ref|YP_001540204.1| - 8.4e-06 25.3 0.1 8.3e-05 22.1 0.1 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain CbiA PF01656.18 gi|159040952|ref|YP_001540204.1| - 1.8e-05 24.2 0.1 2.6e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|159040952|ref|YP_001540204.1| - 4.3e-05 23.0 0.8 0.098 12.0 0.2 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|159040952|ref|YP_001540204.1| - 6.5e-05 23.2 0.0 0.00012 22.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|159040952|ref|YP_001540204.1| - 0.0001 21.4 0.1 0.0012 17.9 0.0 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase DUF87 PF01935.12 gi|159040952|ref|YP_001540204.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 MMR_HSR1 PF01926.18 gi|159040952|ref|YP_001540204.1| - 0.00018 21.4 0.1 0.00038 20.3 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|159040952|ref|YP_001540204.1| - 0.0004 19.9 0.0 0.00082 18.8 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain APS_kinase PF01583.15 gi|159040952|ref|YP_001540204.1| - 0.00044 19.9 0.0 0.00073 19.2 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase NTPase_1 PF03266.10 gi|159040952|ref|YP_001540204.1| - 0.00083 19.1 0.0 0.0059 16.3 0.0 2.0 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.1 gi|159040952|ref|YP_001540204.1| - 0.0016 18.4 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|159040952|ref|YP_001540204.1| - 0.0017 17.8 0.1 4.4 6.8 0.0 3.3 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|159040952|ref|YP_001540204.1| - 0.0017 17.8 0.1 0.0031 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|159040952|ref|YP_001540204.1| - 0.002 17.7 0.0 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|159040952|ref|YP_001540204.1| - 0.0021 17.2 0.0 0.0032 16.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin HSBP1 PF06825.7 gi|159040952|ref|YP_001540204.1| - 0.0021 17.6 2.1 0.29 10.7 0.0 2.4 2 0 0 2 2 2 1 Heat shock factor binding protein 1 ABC_tran PF00005.22 gi|159040952|ref|YP_001540204.1| - 0.0034 17.6 0.0 0.007 16.6 0.0 1.6 2 0 0 2 2 1 1 ABC transporter T2SE PF00437.15 gi|159040952|ref|YP_001540204.1| - 0.0035 16.2 0.0 0.0081 15.0 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|159040952|ref|YP_001540204.1| - 0.0036 17.0 0.0 0.0068 16.1 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|159040952|ref|YP_001540204.1| - 0.0043 16.5 0.1 0.025 14.0 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|159040952|ref|YP_001540204.1| - 0.0053 16.9 0.3 0.022 14.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|159040952|ref|YP_001540204.1| - 0.0058 16.5 0.0 0.01 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|159040952|ref|YP_001540204.1| - 0.0062 15.5 0.0 0.011 14.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.9 gi|159040952|ref|YP_001540204.1| - 0.0091 15.0 0.0 0.011 14.7 0.0 1.4 1 1 0 1 1 1 1 KAP family P-loop domain NACHT PF05729.7 gi|159040952|ref|YP_001540204.1| - 0.0097 15.5 0.1 0.041 13.5 0.0 2.0 2 1 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|159040952|ref|YP_001540204.1| - 0.011 15.5 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain KTI12 PF08433.5 gi|159040952|ref|YP_001540204.1| - 0.015 14.4 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Septin PF00735.13 gi|159040952|ref|YP_001540204.1| - 0.023 13.6 0.0 2 7.3 0.0 2.2 2 0 0 2 2 2 0 Septin RNA_helicase PF00910.17 gi|159040952|ref|YP_001540204.1| - 0.03 14.5 0.0 0.073 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.11 gi|159040952|ref|YP_001540204.1| - 0.033 13.4 0.0 0.12 11.5 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein DUF258 PF03193.11 gi|159040952|ref|YP_001540204.1| - 0.049 12.8 0.1 0.48 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Herpes_Helicase PF02689.9 gi|159040952|ref|YP_001540204.1| - 0.055 11.2 0.1 0.078 10.7 0.1 1.1 1 0 0 1 1 1 0 Helicase AAA_5 PF07728.9 gi|159040952|ref|YP_001540204.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|159040952|ref|YP_001540204.1| - 0.068 12.0 0.0 0.13 11.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain TrwB_AAD_bind PF10412.4 gi|159040952|ref|YP_001540204.1| - 0.072 11.7 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.1 gi|159040952|ref|YP_001540204.1| - 0.082 12.8 0.1 0.23 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain Methyltransf_32 PF13679.1 gi|159040952|ref|YP_001540204.1| - 0.092 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CobU PF02283.11 gi|159040952|ref|YP_001540204.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_25 PF13481.1 gi|159040952|ref|YP_001540204.1| - 0.16 11.3 1.3 0.82 9.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain PfkB PF00294.19 gi|159040953|ref|YP_001540205.1| - 3.3e-48 164.3 0.0 3.8e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|159040953|ref|YP_001540205.1| - 0.099 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase NTP_transf_5 PF14907.1 gi|159040954|ref|YP_001540206.1| - 5e-07 29.3 0.0 8.1e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase PhageMin_Tail PF10145.4 gi|159040955|ref|YP_001540207.1| - 0.015 14.9 0.6 0.021 14.5 0.4 1.1 1 0 0 1 1 1 0 Phage-related minor tail protein KaiC PF06745.8 gi|159040956|ref|YP_001540208.1| - 2.8e-21 75.6 0.0 5e-21 74.8 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|159040956|ref|YP_001540208.1| - 4.8e-10 39.1 0.0 7.3e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|159040956|ref|YP_001540208.1| - 3.8e-05 22.2 0.3 5.2e-05 21.7 0.2 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_16 PF13191.1 gi|159040956|ref|YP_001540208.1| - 0.00014 21.9 0.0 0.0002 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|159040956|ref|YP_001540208.1| - 0.00037 20.4 0.0 0.0018 18.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|159040956|ref|YP_001540208.1| - 0.00064 19.8 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|159040956|ref|YP_001540208.1| - 0.00065 19.3 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|159040956|ref|YP_001540208.1| - 0.0014 18.3 0.2 0.0063 16.1 0.1 2.2 1 1 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|159040956|ref|YP_001540208.1| - 0.003 17.2 0.0 0.0043 16.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|159040956|ref|YP_001540208.1| - 0.0033 17.6 0.1 0.011 15.9 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|159040956|ref|YP_001540208.1| - 0.025 14.3 0.0 0.076 12.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|159040956|ref|YP_001540208.1| - 0.048 13.3 0.0 0.16 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) EIIBC-GUT_N PF03612.9 gi|159040956|ref|YP_001540208.1| - 0.065 12.8 0.0 2 8.0 0.0 2.2 1 1 1 2 2 2 0 Sorbitol phosphotransferase enzyme II N-terminus CSTF2_hinge PF14327.1 gi|159040956|ref|YP_001540208.1| - 0.069 13.2 0.7 8.1 6.6 0.1 2.7 1 1 1 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 Sigma54_activat PF00158.21 gi|159040956|ref|YP_001540208.1| - 0.082 12.3 0.0 0.7 9.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|159040956|ref|YP_001540208.1| - 0.093 12.1 0.1 1 8.7 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|159040956|ref|YP_001540208.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Malic_M PF03949.10 gi|159040957|ref|YP_001540209.1| - 1.7e-66 224.3 0.7 2.3e-66 223.9 0.5 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|159040957|ref|YP_001540209.1| - 4.9e-22 78.3 0.2 5.3e-14 52.2 0.1 3.2 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain THF_DHG_CYH_C PF02882.14 gi|159040957|ref|YP_001540209.1| - 0.0057 15.7 0.0 0.018 14.1 0.0 1.8 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.15 gi|159040957|ref|YP_001540209.1| - 0.024 14.7 3.0 1.1 9.3 0.0 2.7 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Peripla_BP_6 PF13458.1 gi|159040957|ref|YP_001540209.1| - 0.043 13.1 0.0 0.15 11.4 0.0 1.9 3 0 0 3 3 3 0 Periplasmic binding protein OTCace PF00185.19 gi|159040957|ref|YP_001540209.1| - 0.065 13.1 0.9 0.73 9.6 0.1 2.3 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SIS_2 PF13580.1 gi|159040957|ref|YP_001540209.1| - 0.11 12.2 3.8 0.11 12.1 0.1 2.8 3 1 0 3 3 3 0 SIS domain AdoHcyase_NAD PF00670.16 gi|159040957|ref|YP_001540209.1| - 0.11 12.3 0.0 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Acetyltransf_1 PF00583.19 gi|159040958|ref|YP_001540210.1| - 4.6e-16 58.6 0.1 6.8e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|159040958|ref|YP_001540210.1| - 5.2e-13 49.2 0.0 6.2e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|159040958|ref|YP_001540210.1| - 9.4e-11 41.8 0.0 9.9e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|159040958|ref|YP_001540210.1| - 1.4e-10 41.1 0.0 2e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|159040958|ref|YP_001540210.1| - 5.5e-08 32.7 0.5 1.5e-07 31.2 0.4 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|159040958|ref|YP_001540210.1| - 2.1e-07 31.1 0.0 2.5e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159040958|ref|YP_001540210.1| - 7.8e-07 28.7 0.0 1.3e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|159040958|ref|YP_001540210.1| - 9.3e-06 25.5 0.0 1.3e-05 25.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|159040958|ref|YP_001540210.1| - 0.00026 20.6 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|159040958|ref|YP_001540210.1| - 0.0005 20.0 0.1 0.001 19.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|159040958|ref|YP_001540210.1| - 0.0033 17.2 0.0 0.0052 16.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Mec-17 PF05301.6 gi|159040958|ref|YP_001540210.1| - 0.0055 16.6 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 Touch receptor neuron protein Mec-17 DUF429 PF04250.8 gi|159040960|ref|YP_001540212.1| - 4.5e-27 94.6 1.9 4.3e-26 91.4 1.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF4200 PF13863.1 gi|159040961|ref|YP_001540213.1| - 3.8e-06 26.8 80.7 0.012 15.5 6.2 6.0 3 2 2 5 5 5 3 Domain of unknown function (DUF4200) DUF1664 PF07889.7 gi|159040961|ref|YP_001540213.1| - 1.9e-05 24.4 39.6 0.0082 15.9 0.2 6.3 2 1 4 6 6 6 3 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|159040961|ref|YP_001540213.1| - 4.5e-05 22.8 26.6 0.028 13.5 1.0 4.5 1 1 4 5 5 5 3 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|159040961|ref|YP_001540213.1| - 0.00025 20.8 29.9 0.38 10.5 2.7 5.8 1 1 4 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|159040961|ref|YP_001540213.1| - 0.0012 17.4 12.7 0.0012 17.4 8.8 3.7 1 1 2 3 3 3 2 AAA domain NPV_P10 PF05531.7 gi|159040961|ref|YP_001540213.1| - 0.0025 18.0 33.4 0.59 10.4 0.6 7.8 2 1 4 7 7 7 1 Nucleopolyhedrovirus P10 protein Vip3A_N PF12495.3 gi|159040961|ref|YP_001540213.1| - 0.0025 17.5 3.0 0.0025 17.5 2.1 2.9 2 1 1 3 3 3 1 Vegetative insecticide protein 3A N terminal DUF3552 PF12072.3 gi|159040961|ref|YP_001540213.1| - 0.0033 16.6 90.0 0.13 11.4 9.6 5.9 1 1 4 6 6 6 3 Domain of unknown function (DUF3552) DUF3581 PF12119.3 gi|159040961|ref|YP_001540213.1| - 0.0066 15.7 0.7 0.02 14.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3581) APG17 PF04108.7 gi|159040961|ref|YP_001540213.1| - 0.0094 14.7 0.0 0.0094 14.7 0.0 4.3 1 1 1 3 3 2 1 Autophagy protein Apg17 DUF2365 PF10157.4 gi|159040961|ref|YP_001540213.1| - 0.02 14.7 0.9 0.02 14.7 0.6 4.2 2 2 0 3 3 3 0 Uncharacterized conserved protein (DUF2365) DUF869 PF05911.6 gi|159040961|ref|YP_001540213.1| - 0.03 12.5 57.5 0.16 10.2 7.8 3.1 1 1 2 3 3 3 0 Plant protein of unknown function (DUF869) BLOC1_2 PF10046.4 gi|159040961|ref|YP_001540213.1| - 0.047 13.8 52.1 1.1 9.4 2.1 7.6 2 1 5 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.4 gi|159040961|ref|YP_001540213.1| - 0.067 11.9 63.0 0.018 13.8 5.9 5.1 1 1 2 5 5 5 0 Intra-flagellar transport protein 57 Laminin_II PF06009.7 gi|159040961|ref|YP_001540213.1| - 0.12 12.1 52.9 0.098 12.4 0.3 6.5 1 1 6 7 7 7 0 Laminin Domain II IncA PF04156.9 gi|159040961|ref|YP_001540213.1| - 0.18 11.3 86.9 4.9 6.7 0.1 5.1 1 1 4 5 5 5 0 IncA protein Spc7 PF08317.6 gi|159040961|ref|YP_001540213.1| - 0.18 10.4 70.8 0.46 9.1 15.4 4.2 1 1 3 4 4 4 0 Spc7 kinetochore protein MCPsignal PF00015.16 gi|159040961|ref|YP_001540213.1| - 0.28 10.6 32.7 0.1 12.1 1.4 4.7 2 1 3 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Nup54 PF13874.1 gi|159040961|ref|YP_001540213.1| - 0.72 9.5 63.3 0.026 14.1 6.9 5.3 2 2 1 4 4 4 0 Nucleoporin complex subunit 54 DUF948 PF06103.6 gi|159040961|ref|YP_001540213.1| - 1.1 9.1 21.3 9.7 6.1 0.3 6.1 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Prefoldin_2 PF01920.15 gi|159040961|ref|YP_001540213.1| - 2.2 8.0 0.0 2.2 8.0 0.0 8.7 4 1 4 8 8 6 0 Prefoldin subunit MscS_porin PF12795.2 gi|159040961|ref|YP_001540213.1| - 3.1 7.0 72.9 0.49 9.6 27.6 4.8 2 2 2 5 5 5 0 Mechanosensitive ion channel porin domain Rootletin PF15035.1 gi|159040961|ref|YP_001540213.1| - 6.2 6.7 71.2 3.3 7.6 14.6 5.6 1 1 4 5 5 5 0 Ciliary rootlet component, centrosome cohesion Lipoprotein_7 PF01540.11 gi|159040961|ref|YP_001540213.1| - 7.8 5.4 33.3 10 5.0 0.0 3.5 1 1 2 3 3 3 0 Adhesin lipoprotein Tropomyosin PF00261.15 gi|159040961|ref|YP_001540213.1| - 8 5.4 83.1 1.4 7.9 11.0 4.2 1 1 2 3 3 3 0 Tropomyosin AAA_18 PF13238.1 gi|159040962|ref|YP_001540214.1| - 2.4e-10 40.8 0.0 1e-09 38.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|159040962|ref|YP_001540214.1| - 8e-06 26.6 0.1 1.5e-05 25.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|159040962|ref|YP_001540214.1| - 0.028 13.7 1.4 0.82 9.0 1.0 2.4 1 1 0 1 1 1 0 Thymidylate kinase AAA_33 PF13671.1 gi|159040962|ref|YP_001540214.1| - 0.058 13.2 0.0 0.18 11.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|159040964|ref|YP_001540216.1| - 0.00047 19.6 0.0 0.00087 18.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|159040964|ref|YP_001540216.1| - 0.00081 18.3 0.0 0.0011 17.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|159040964|ref|YP_001540216.1| - 0.0016 18.6 0.0 0.0052 16.9 0.0 1.8 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|159040964|ref|YP_001540216.1| - 0.0023 17.1 0.0 0.0044 16.2 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.1 gi|159040964|ref|YP_001540216.1| - 0.0048 16.6 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|159040964|ref|YP_001540216.1| - 0.0057 16.7 0.1 0.016 15.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|159040964|ref|YP_001540216.1| - 0.0099 15.3 0.0 0.02 14.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Pox_A32 PF04665.7 gi|159040964|ref|YP_001540216.1| - 0.01 15.1 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein NACHT PF05729.7 gi|159040964|ref|YP_001540216.1| - 0.012 15.3 0.0 0.03 13.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain RecA PF00154.16 gi|159040964|ref|YP_001540216.1| - 0.021 13.9 0.0 0.035 13.1 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_31 PF13614.1 gi|159040964|ref|YP_001540216.1| - 0.023 14.6 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|159040964|ref|YP_001540216.1| - 0.023 14.3 0.0 0.059 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|159040964|ref|YP_001540216.1| - 0.044 13.3 0.0 0.074 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|159040964|ref|YP_001540216.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter DUF2075 PF09848.4 gi|159040964|ref|YP_001540216.1| - 0.16 10.8 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sld5 PF05916.6 gi|159040965|ref|YP_001540217.1| - 1.4e-07 31.7 0.1 1.8e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 GINS complex protein Antig_Caf1 PF09255.5 gi|159040965|ref|YP_001540217.1| - 0.14 12.0 0.0 13 5.6 0.0 2.1 2 0 0 2 2 2 0 Caf1 Capsule antigen MCM PF00493.18 gi|159040966|ref|YP_001540218.1| - 1.1e-138 461.6 0.1 1.4e-138 461.2 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|159040966|ref|YP_001540218.1| - 1.1e-17 64.5 0.9 3.9e-17 62.8 0.6 2.0 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|159040966|ref|YP_001540218.1| - 2.2e-08 33.5 0.1 3.4e-05 23.1 0.0 2.6 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|159040966|ref|YP_001540218.1| - 2.1e-07 30.6 0.0 4.6e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|159040966|ref|YP_001540218.1| - 3.9e-07 29.8 0.0 1.3e-06 28.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.5 gi|159040966|ref|YP_001540218.1| - 0.00014 21.6 1.1 0.00029 20.7 0.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|159040966|ref|YP_001540218.1| - 0.00061 19.4 0.2 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Sigma54_activat PF00158.21 gi|159040966|ref|YP_001540218.1| - 0.0025 17.2 0.1 0.014 14.8 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|159040966|ref|YP_001540218.1| - 0.012 15.7 0.1 0.061 13.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|159040966|ref|YP_001540218.1| - 0.031 14.2 1.3 0.12 12.3 0.1 2.8 2 1 0 2 2 2 0 AAA ATPase domain zinc_ribbon_2 PF13240.1 gi|159040966|ref|YP_001540218.1| - 0.034 13.6 3.3 0.13 11.7 2.2 1.9 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|159040966|ref|YP_001540218.1| - 0.042 13.6 0.6 0.088 12.6 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Bot1p PF12298.3 gi|159040966|ref|YP_001540218.1| - 0.07 13.0 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein zf-ribbon_3 PF13248.1 gi|159040966|ref|YP_001540218.1| - 0.094 11.9 2.7 0.7 9.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|159040966|ref|YP_001540218.1| - 0.19 11.1 2.0 0.23 10.8 0.1 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RNHCP PF12647.2 gi|159040966|ref|YP_001540218.1| - 0.19 11.5 0.4 0.44 10.4 0.3 1.6 1 0 0 1 1 1 0 RNHCP domain UPF0547 PF10571.4 gi|159040966|ref|YP_001540218.1| - 0.54 9.9 4.0 5.2 6.8 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.1 gi|159040966|ref|YP_001540218.1| - 1.8 7.9 4.5 0.28 10.5 0.4 1.6 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|159040966|ref|YP_001540218.1| - 9.5 6.1 8.3 14 5.6 2.0 2.5 1 1 1 2 2 2 0 YhfH-like protein Spermine_synth PF01564.12 gi|159040967|ref|YP_001540219.1| - 1.5e-52 177.9 0.6 1.9e-52 177.6 0.4 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_31 PF13847.1 gi|159040967|ref|YP_001540219.1| - 6.5e-08 32.3 0.0 8.5e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159040967|ref|YP_001540219.1| - 2.2e-05 25.0 0.0 3.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159040967|ref|YP_001540219.1| - 3.7e-05 24.1 0.1 0.00011 22.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159040967|ref|YP_001540219.1| - 8.3e-05 22.8 0.0 0.00022 21.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159040967|ref|YP_001540219.1| - 0.00056 19.9 0.0 0.00088 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|159040967|ref|YP_001540219.1| - 0.0019 17.6 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|159040967|ref|YP_001540219.1| - 0.0025 17.5 0.0 0.0085 15.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|159040967|ref|YP_001540219.1| - 0.0047 17.3 0.0 0.0089 16.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain ABC_tran PF00005.22 gi|159040969|ref|YP_001540221.1| - 8.1e-26 90.9 0.0 1.6e-25 89.9 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|159040969|ref|YP_001540221.1| - 4.2e-14 53.1 0.4 1.4e-08 35.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159040969|ref|YP_001540221.1| - 0.00038 19.7 0.3 0.12 11.5 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|159040969|ref|YP_001540221.1| - 0.0016 18.0 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|159040969|ref|YP_001540221.1| - 0.002 18.5 0.2 0.0037 17.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|159040969|ref|YP_001540221.1| - 0.0028 17.5 0.0 0.015 15.1 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|159040969|ref|YP_001540221.1| - 0.0049 16.3 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|159040969|ref|YP_001540221.1| - 0.0078 15.4 0.1 0.013 14.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|159040969|ref|YP_001540221.1| - 0.011 14.8 0.1 0.96 8.4 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|159040969|ref|YP_001540221.1| - 0.012 15.7 0.2 0.03 14.5 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|159040969|ref|YP_001540221.1| - 0.023 13.7 0.2 0.13 11.3 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin ETF PF01012.16 gi|159040969|ref|YP_001540221.1| - 0.031 14.0 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain AAA_22 PF13401.1 gi|159040969|ref|YP_001540221.1| - 0.037 14.1 0.1 0.16 12.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|159040969|ref|YP_001540221.1| - 0.063 13.2 0.5 0.15 11.9 0.1 1.7 2 0 0 2 2 2 0 AAA ATPase domain STAS PF01740.16 gi|159040969|ref|YP_001540221.1| - 0.07 12.5 0.0 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 STAS domain UPF0079 PF02367.12 gi|159040969|ref|YP_001540221.1| - 0.079 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 OrfB_Zn_ribbon PF07282.6 gi|159040970|ref|YP_001540222.1| - 5.8e-23 80.3 0.3 1.1e-22 79.4 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|159040970|ref|YP_001540222.1| - 8.8e-18 64.5 6.7 2.1e-17 63.3 4.6 1.6 1 1 0 1 1 1 1 Probable transposase Prok-RING_1 PF14446.1 gi|159040970|ref|YP_001540222.1| - 0.15 11.7 0.9 0.27 11.0 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1610 PF07754.6 gi|159040970|ref|YP_001540222.1| - 0.26 11.4 0.2 0.26 11.4 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) MFS_1 PF07690.11 gi|159040971|ref|YP_001540223.1| - 1.4e-43 148.9 51.4 1.4e-43 148.9 35.6 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159040971|ref|YP_001540223.1| - 3.2e-08 32.5 14.2 3.2e-08 32.5 9.8 3.5 2 2 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|159040971|ref|YP_001540223.1| - 4.1e-07 28.4 14.9 2.7e-06 25.8 4.5 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|159040971|ref|YP_001540223.1| - 0.51 8.6 51.1 0.084 11.2 6.4 4.1 1 1 3 4 4 4 0 MFS/sugar transport protein PaREP1 PF05942.6 gi|159040972|ref|YP_001540224.1| - 1.1e-33 115.5 3.4 1.8e-33 114.8 2.4 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|159040972|ref|YP_001540224.1| - 0.00031 20.3 1.2 0.0011 18.6 0.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF357) DUF4398 PF14346.1 gi|159040972|ref|YP_001540224.1| - 0.0026 17.7 2.7 0.0039 17.2 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) ALMS_motif PF15309.1 gi|159040972|ref|YP_001540224.1| - 0.051 13.4 0.7 0.075 12.8 0.5 1.2 1 0 0 1 1 1 0 ALMS motif BRX_N PF13713.1 gi|159040972|ref|YP_001540224.1| - 0.053 12.9 1.3 0.29 10.6 0.2 2.4 2 0 0 2 2 2 0 Transcription factor BRX N-terminal domain HEPN PF05168.9 gi|159040972|ref|YP_001540224.1| - 0.18 11.6 7.0 0.12 12.2 3.5 1.9 2 1 0 2 2 2 0 HEPN domain SBP_bac_5 PF00496.17 gi|159040973|ref|YP_001540225.1| - 1.1e-27 96.8 9.0 1.9e-27 96.0 6.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159040973|ref|YP_001540225.1| - 0.16 11.6 13.1 0.26 10.8 9.1 1.3 1 0 0 1 1 1 0 Rifin/stevor family Alpha_L_fucos PF01120.12 gi|159040974|ref|YP_001540226.1| - 7.9e-99 330.8 0.1 9.8e-99 330.5 0.1 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase GHL6 PF14871.1 gi|159040974|ref|YP_001540226.1| - 0.0012 18.9 0.0 0.0038 17.2 0.0 1.8 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 GFO_IDH_MocA PF01408.17 gi|159040975|ref|YP_001540227.1| - 0.15 12.5 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PNP_UDP_1 PF01048.15 gi|159040976|ref|YP_001540228.1| - 2.8e-42 144.2 0.3 3.6e-42 143.9 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SpoA PF01052.15 gi|159040976|ref|YP_001540228.1| - 0.071 12.7 0.0 0.69 9.5 0.0 2.4 2 0 0 2 2 2 0 Surface presentation of antigens (SPOA) His_Phos_1 PF00300.17 gi|159040977|ref|YP_001540229.1| - 3.2e-11 43.5 0.1 1.6e-10 41.2 0.0 1.8 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) Nol1_Nop2_Fmu PF01189.12 gi|159040978|ref|YP_001540230.1| - 1.2e-33 116.7 0.0 9e-32 110.5 0.0 2.1 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|159040978|ref|YP_001540230.1| - 1.4e-12 47.1 0.1 2.6e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.1 gi|159040978|ref|YP_001540230.1| - 4.8e-08 32.7 0.0 7.5e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159040978|ref|YP_001540230.1| - 1.6e-05 25.4 0.0 3.5e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|159040978|ref|YP_001540230.1| - 5.7e-05 23.1 0.0 0.00012 22.0 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|159040978|ref|YP_001540230.1| - 0.00041 20.3 0.0 0.00099 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159040978|ref|YP_001540230.1| - 0.0056 16.0 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|159040978|ref|YP_001540230.1| - 0.011 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|159040978|ref|YP_001540230.1| - 0.032 13.6 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 UspB PF10625.4 gi|159040978|ref|YP_001540230.1| - 0.16 11.7 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 Universal stress protein B (UspB) IF-2B PF01008.12 gi|159040980|ref|YP_001540232.1| - 6.4e-69 232.0 0.0 7.8e-69 231.7 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Inositol_P PF00459.20 gi|159040981|ref|YP_001540233.1| - 1.6e-27 96.4 0.0 1.9e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|159040981|ref|YP_001540233.1| - 0.00013 20.9 0.0 0.00017 20.5 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase PfkB PF00294.19 gi|159040982|ref|YP_001540234.1| - 1.5e-09 37.4 0.0 9.8e-09 34.7 0.0 1.9 1 1 0 1 1 1 1 pfkB family carbohydrate kinase TFIIS_C PF01096.13 gi|159040983|ref|YP_001540235.1| - 5.2e-21 73.9 15.1 1.7e-20 72.3 3.4 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|159040983|ref|YP_001540235.1| - 2.4e-09 36.8 11.0 5.2e-05 22.9 1.2 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159040983|ref|YP_001540235.1| - 2.2e-08 33.6 7.6 3.5e-05 23.3 0.4 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|159040983|ref|YP_001540235.1| - 1.6e-07 30.3 12.7 0.11 11.7 0.3 4.2 4 0 0 4 4 4 3 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|159040983|ref|YP_001540235.1| - 2.8e-07 29.7 9.0 0.0019 17.5 0.8 3.4 2 2 0 2 2 2 2 TFIIB zinc-binding RNA_POL_M_15KD PF02150.11 gi|159040983|ref|YP_001540235.1| - 3.6e-07 29.7 0.5 3.6e-07 29.7 0.4 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|159040983|ref|YP_001540235.1| - 5.6e-07 29.1 10.3 0.22 11.2 0.0 4.4 5 0 0 5 5 4 2 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|159040983|ref|YP_001540235.1| - 9.2e-07 28.5 6.5 0.00072 19.3 0.2 2.4 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.5 gi|159040983|ref|YP_001540235.1| - 2.9e-06 27.0 3.8 0.018 14.9 0.2 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|159040983|ref|YP_001540235.1| - 3.4e-05 23.3 12.4 0.32 10.6 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|159040983|ref|YP_001540235.1| - 4.6e-05 23.3 12.6 0.085 12.8 0.4 4.1 3 1 1 4 4 4 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|159040983|ref|YP_001540235.1| - 5.4e-05 22.5 14.9 0.27 10.7 0.3 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159040983|ref|YP_001540235.1| - 0.00012 21.7 13.7 0.53 10.0 0.2 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zf-TFIIB PF13453.1 gi|159040983|ref|YP_001540235.1| - 0.00016 20.7 12.6 0.00016 20.7 0.5 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger Zn_ribbon_recom PF13408.1 gi|159040983|ref|YP_001540235.1| - 0.00076 19.6 9.7 0.0065 16.6 0.4 2.6 2 1 0 2 2 2 1 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.1 gi|159040983|ref|YP_001540235.1| - 0.0019 18.4 9.6 0.26 11.6 0.8 3.0 1 1 2 3 3 3 3 Restriction alleviation protein Lar IBR PF01485.16 gi|159040983|ref|YP_001540235.1| - 0.002 17.9 9.5 0.034 14.0 0.7 3.0 2 1 0 2 2 2 1 IBR domain Zn-ribbon_8 PF09723.5 gi|159040983|ref|YP_001540235.1| - 0.0026 17.6 14.4 2.2 8.3 0.0 4.0 3 1 0 3 3 3 0 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|159040983|ref|YP_001540235.1| - 0.012 14.9 1.6 0.072 12.4 0.1 2.2 2 1 0 2 2 2 0 DNA Polymerase alpha zinc finger PhnA_Zn_Ribbon PF08274.7 gi|159040983|ref|YP_001540235.1| - 0.014 15.1 4.5 1 9.2 0.6 3.3 2 2 0 2 2 2 0 PhnA Zinc-Ribbon DUF2082 PF09855.4 gi|159040983|ref|YP_001540235.1| - 0.018 14.9 10.8 8.1 6.3 0.0 4.1 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-Sec23_Sec24 PF04810.10 gi|159040983|ref|YP_001540235.1| - 0.035 13.6 1.4 0.035 13.6 1.0 3.1 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger Zn_Tnp_IS1 PF03811.8 gi|159040983|ref|YP_001540235.1| - 0.035 13.5 14.9 0.12 11.8 0.0 4.0 3 1 1 4 4 4 0 InsA N-terminal domain RNHCP PF12647.2 gi|159040983|ref|YP_001540235.1| - 0.055 13.2 7.1 0.033 14.0 1.5 2.5 1 1 1 2 2 2 0 RNHCP domain RecR PF02132.10 gi|159040983|ref|YP_001540235.1| - 0.061 12.7 9.4 1.5 8.3 0.0 3.9 4 0 0 4 4 4 0 RecR protein C1_1 PF00130.17 gi|159040983|ref|YP_001540235.1| - 0.068 12.9 0.6 0.068 12.9 0.4 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) A2L_zn_ribbon PF08792.5 gi|159040983|ref|YP_001540235.1| - 0.074 12.5 9.2 3.2 7.3 0.0 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain FdhE PF04216.7 gi|159040983|ref|YP_001540235.1| - 0.081 12.6 0.3 0.081 12.6 0.2 2.3 2 1 1 3 3 2 0 Protein involved in formate dehydrogenase formation zf-RING_3 PF14369.1 gi|159040983|ref|YP_001540235.1| - 0.082 12.9 7.6 1.8 8.6 0.0 3.9 4 0 0 4 4 4 0 zinc-finger DUF164 PF02591.10 gi|159040983|ref|YP_001540235.1| - 0.093 12.5 5.6 6.2 6.7 0.1 3.8 4 0 0 4 4 4 0 Putative zinc ribbon domain T4_baseplate PF12322.3 gi|159040983|ref|YP_001540235.1| - 0.12 11.6 2.4 6.7 5.8 0.2 2.5 1 1 2 3 3 3 0 T4 bacteriophage base plate protein eIF-5_eIF-2B PF01873.12 gi|159040983|ref|YP_001540235.1| - 0.12 12.0 1.8 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Terminase_GpA PF05876.7 gi|159040983|ref|YP_001540235.1| - 0.13 10.5 8.2 0.066 11.5 1.3 2.3 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) Nudix_N_2 PF14803.1 gi|159040983|ref|YP_001540235.1| - 0.13 11.9 14.2 0.83 9.3 0.1 4.1 3 1 0 3 3 3 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|159040983|ref|YP_001540235.1| - 0.16 9.6 3.7 1.5 6.4 0.2 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Rubredoxin PF00301.15 gi|159040983|ref|YP_001540235.1| - 0.2 11.5 19.8 10 6.0 0.9 4.2 3 1 0 3 3 3 0 Rubredoxin DUF4379 PF14311.1 gi|159040983|ref|YP_001540235.1| - 0.22 11.3 0.1 0.22 11.3 0.1 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4379) DUF2072 PF09845.4 gi|159040983|ref|YP_001540235.1| - 0.23 11.4 7.5 3.6 7.5 0.7 3.1 2 1 1 3 3 3 0 Zn-ribbon containing protein (DUF2072) zf-C2H2_4 PF13894.1 gi|159040983|ref|YP_001540235.1| - 0.24 11.8 10.1 12 6.5 0.0 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger DUF2296 PF10058.4 gi|159040983|ref|YP_001540235.1| - 0.24 11.1 14.3 0.51 10.1 2.4 3.6 2 2 1 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Opy2 PF09463.5 gi|159040983|ref|YP_001540235.1| - 0.24 11.5 6.3 5.2 7.2 0.0 3.7 4 0 0 4 4 4 0 Opy2 protein HypA PF01155.14 gi|159040983|ref|YP_001540235.1| - 0.26 10.9 8.0 5.8 6.6 2.4 3.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Ogr_Delta PF04606.7 gi|159040983|ref|YP_001540235.1| - 0.26 10.9 14.3 18 5.1 0.1 4.0 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger zf-UBP PF02148.14 gi|159040983|ref|YP_001540235.1| - 0.3 11.2 2.3 1.7 8.8 0.3 2.5 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Zn_Tnp_IS91 PF14319.1 gi|159040983|ref|YP_001540235.1| - 0.33 10.4 9.8 0.89 9.0 0.3 3.2 2 2 1 3 3 3 0 Transposase zinc-binding domain DUF35_N PF12172.3 gi|159040983|ref|YP_001540235.1| - 0.36 10.8 10.0 25 4.9 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.14 gi|159040983|ref|YP_001540235.1| - 0.41 10.4 9.4 10 6.0 0.0 3.5 3 1 0 3 3 3 0 Ribosomal protein L37e DUF1610 PF07754.6 gi|159040983|ref|YP_001540235.1| - 0.54 10.4 21.2 0.82 9.8 0.5 4.6 5 0 0 5 5 4 0 Domain of unknown function (DUF1610) Baculo_LEF5_C PF11792.3 gi|159040983|ref|YP_001540235.1| - 0.63 9.4 0.0 0.63 9.4 0.0 3.2 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-MYND PF01753.13 gi|159040983|ref|YP_001540235.1| - 0.68 9.8 8.7 5.1 7.0 0.6 2.9 2 1 1 3 3 3 0 MYND finger Rpr2 PF04032.11 gi|159040983|ref|YP_001540235.1| - 0.72 9.7 8.3 4.8 7.1 4.5 2.9 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-NADH-PPase PF09297.6 gi|159040983|ref|YP_001540235.1| - 0.73 9.3 18.0 0.53 9.8 3.1 4.0 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|159040983|ref|YP_001540235.1| - 0.73 8.9 13.0 0.95 8.5 0.2 4.0 3 1 1 4 4 4 0 Mu-like prophage protein Com zf-CHY PF05495.7 gi|159040983|ref|YP_001540235.1| - 0.9 9.7 5.1 7.8 6.7 0.3 2.5 2 1 0 2 2 2 0 CHY zinc finger DUF3797 PF12677.2 gi|159040983|ref|YP_001540235.1| - 0.93 9.1 11.9 1.3 8.6 0.4 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) NOB1_Zn_bind PF08772.6 gi|159040983|ref|YP_001540235.1| - 1 9.2 12.0 1.2 8.9 0.0 3.8 3 1 1 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like DRP PF06044.7 gi|159040983|ref|YP_001540235.1| - 1.1 8.2 4.1 4.2 6.2 0.4 2.1 2 0 0 2 2 2 0 Dam-replacing family TerY-C PF15616.1 gi|159040983|ref|YP_001540235.1| - 1.2 9.0 4.7 6.9 6.6 0.0 2.6 2 1 0 2 2 2 0 TerY-C metal binding domain SIR2 PF02146.12 gi|159040983|ref|YP_001540235.1| - 1.3 8.7 3.6 13 5.5 0.5 2.8 1 1 1 2 2 2 0 Sir2 family zf-HIT PF04438.11 gi|159040983|ref|YP_001540235.1| - 1.3 8.7 17.1 5.1 6.8 0.1 4.1 4 0 0 4 4 4 0 HIT zinc finger SprT-like PF10263.4 gi|159040983|ref|YP_001540235.1| - 1.3 8.6 5.6 23 4.6 3.9 2.0 1 1 0 1 1 1 0 SprT-like family zf-Mss51 PF13824.1 gi|159040983|ref|YP_001540235.1| - 1.4 8.7 12.7 6.1 6.7 2.0 3.4 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-tcix PF14952.1 gi|159040983|ref|YP_001540235.1| - 1.8 7.9 18.7 0.94 8.8 0.6 4.1 3 1 1 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|159040983|ref|YP_001540235.1| - 1.8 8.3 11.2 22 4.9 0.3 4.2 3 1 1 4 4 4 0 YhfH-like protein zf-C4_Topoisom PF01396.14 gi|159040983|ref|YP_001540235.1| - 2.8 7.5 15.7 5.5 6.5 0.1 3.6 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|159040983|ref|YP_001540235.1| - 2.9 7.8 11.7 10 6.1 0.2 3.7 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_S27e PF01667.12 gi|159040983|ref|YP_001540235.1| - 3 7.4 10.0 3.8 7.1 0.6 3.4 2 2 0 2 2 2 0 Ribosomal protein S27 NMD3 PF04981.8 gi|159040983|ref|YP_001540235.1| - 3.2 6.7 5.7 7.5 5.5 0.0 2.7 1 1 0 2 2 2 0 NMD3 family zf-Di19 PF05605.7 gi|159040983|ref|YP_001540235.1| - 3.5 7.8 6.7 5.9 7.1 0.0 2.9 2 1 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zf-LITAF-like PF10601.4 gi|159040983|ref|YP_001540235.1| - 4.3 7.2 9.9 18 5.2 0.0 3.6 3 1 1 4 4 3 0 LITAF-like zinc ribbon domain DUF1936 PF09151.5 gi|159040983|ref|YP_001540235.1| - 4.5 6.8 13.2 5.5 6.5 0.1 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF1936) FYDLN_acid PF09538.5 gi|159040983|ref|YP_001540235.1| - 6.6 7.3 8.2 13 6.4 0.9 3.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-H2C2_2 PF13465.1 gi|159040983|ref|YP_001540235.1| - 6.7 7.2 15.3 7.6 7.0 0.2 4.2 3 1 1 4 4 4 0 Zinc-finger double domain VP_N-CPKC PF11475.3 gi|159040983|ref|YP_001540235.1| - 6.8 6.3 11.5 1.2 8.6 0.1 3.4 4 0 0 4 4 3 0 Virion protein N terminal domain DNA_RNApol_7kD PF03604.8 gi|159040983|ref|YP_001540235.1| - 6.8 6.2 14.1 24 4.4 0.5 3.8 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.9 gi|159040983|ref|YP_001540235.1| - 7.6 6.2 13.0 13 5.5 0.1 3.8 3 1 0 3 3 3 0 Adenylate kinase, active site lid Cys_rich_KTR PF14205.1 gi|159040983|ref|YP_001540235.1| - 8.9 5.8 9.8 11 5.6 0.0 3.6 4 0 0 4 4 3 0 Cysteine-rich KTR zf-C3HC4_3 PF13920.1 gi|159040983|ref|YP_001540235.1| - 9.2 6.0 8.5 3.4 7.3 0.5 2.7 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) SurE PF01975.12 gi|159040984|ref|YP_001540236.1| - 1.8e-47 161.1 0.0 2.2e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Glyco_transf_4 PF13439.1 gi|159040984|ref|YP_001540236.1| - 0.029 14.0 0.0 0.074 12.7 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase Family 4 GPP34 PF05719.6 gi|159040985|ref|YP_001540237.1| - 0.0068 16.5 0.0 0.0096 16.0 0.0 1.2 1 0 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) Pro_Al_protease PF02983.9 gi|159040985|ref|YP_001540237.1| - 0.63 10.0 2.6 0.97 9.4 1.8 1.3 1 0 0 1 1 1 0 Alpha-lytic protease prodomain DUF3107 PF11305.3 gi|159040986|ref|YP_001540238.1| - 0.2 11.5 0.9 1.7 8.5 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3107) OrfB_IS605 PF01385.14 gi|159040988|ref|YP_001540240.1| - 1e-69 234.4 4.4 1.3e-69 234.0 3.1 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|159040988|ref|YP_001540240.1| - 2.1e-20 72.1 0.0 5.8e-20 70.7 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|159040988|ref|YP_001540240.1| - 0.0042 17.1 0.0 0.01 15.9 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) Baculo_PEP_C PF04513.7 gi|159040989|ref|YP_001540241.1| - 8.9e-07 28.8 6.2 6.5e-05 22.7 2.4 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|159040989|ref|YP_001540241.1| - 6.4e-06 25.8 1.6 0.0078 15.8 0.5 2.2 2 0 0 2 2 2 2 IncA protein COG2 PF06148.6 gi|159040989|ref|YP_001540241.1| - 7e-06 25.9 4.3 0.00058 19.7 0.1 3.0 1 1 1 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Apolipoprotein PF01442.13 gi|159040989|ref|YP_001540241.1| - 9.4e-06 25.2 0.7 1.6e-05 24.5 0.5 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain TBPIP PF07106.8 gi|159040989|ref|YP_001540241.1| - 1.5e-05 24.6 3.8 0.0079 15.7 0.7 2.2 1 1 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Filament PF00038.16 gi|159040989|ref|YP_001540241.1| - 4.4e-05 23.1 2.6 0.0041 16.6 0.5 2.1 1 1 1 2 2 2 1 Intermediate filament protein Laminin_II PF06009.7 gi|159040989|ref|YP_001540241.1| - 8.5e-05 22.3 4.6 0.0013 18.4 1.0 2.1 1 1 0 2 2 2 1 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|159040989|ref|YP_001540241.1| - 9.9e-05 22.3 1.2 0.33 10.9 0.1 2.5 2 1 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|159040989|ref|YP_001540241.1| - 0.00017 20.3 4.3 0.048 12.3 2.0 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|159040989|ref|YP_001540241.1| - 0.00027 20.2 5.3 0.03 13.4 1.3 2.2 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Phe_tRNA-synt_N PF02912.13 gi|159040989|ref|YP_001540241.1| - 0.00037 20.1 0.2 0.79 9.4 0.0 2.6 2 0 0 2 2 2 1 Aminoacyl tRNA synthetase class II, N-terminal domain TelA PF05816.6 gi|159040989|ref|YP_001540241.1| - 0.00042 19.1 3.2 0.39 9.3 1.7 2.1 1 1 1 2 2 2 2 Toxic anion resistance protein (TelA) DUF1351 PF07083.6 gi|159040989|ref|YP_001540241.1| - 0.00046 19.8 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1351) CorA PF01544.13 gi|159040989|ref|YP_001540241.1| - 0.00067 18.7 3.8 0.00083 18.4 2.2 1.5 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|159040989|ref|YP_001540241.1| - 0.00073 19.3 2.9 0.16 11.8 0.4 2.5 1 1 0 2 2 2 1 Protein of unknown function (DUF1664) EzrA PF06160.7 gi|159040989|ref|YP_001540241.1| - 0.00098 17.4 2.0 0.0024 16.1 1.4 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Phage_GPO PF05929.6 gi|159040989|ref|YP_001540241.1| - 0.0011 18.3 0.3 0.061 12.5 0.0 2.0 1 1 1 2 2 2 1 Phage capsid scaffolding protein (GPO) serine peptidase RmuC PF02646.11 gi|159040989|ref|YP_001540241.1| - 0.0011 17.8 3.5 0.25 10.1 0.1 2.8 1 1 2 3 3 3 1 RmuC family Syntaxin-6_N PF09177.6 gi|159040989|ref|YP_001540241.1| - 0.0014 18.9 5.9 5 7.6 0.5 3.3 1 1 1 3 3 3 0 Syntaxin 6, N-terminal PspA_IM30 PF04012.7 gi|159040989|ref|YP_001540241.1| - 0.0017 17.7 0.4 0.0085 15.4 0.0 2.0 1 1 1 2 2 2 1 PspA/IM30 family FliJ PF02050.11 gi|159040989|ref|YP_001540241.1| - 0.0018 18.3 2.3 0.62 10.1 0.4 2.9 2 1 1 3 3 3 1 Flagellar FliJ protein TPR_MLP1_2 PF07926.7 gi|159040989|ref|YP_001540241.1| - 0.002 17.8 2.0 0.036 13.8 0.3 2.4 1 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein DASH_Dad2 PF08654.5 gi|159040989|ref|YP_001540241.1| - 0.0022 17.9 6.8 2.4 8.1 0.0 3.2 1 1 2 3 3 3 0 DASH complex subunit Dad2 DegS PF05384.6 gi|159040989|ref|YP_001540241.1| - 0.0022 17.1 3.5 0.0097 15.1 0.6 2.4 1 1 1 2 2 2 1 Sensor protein DegS TMF_DNA_bd PF12329.3 gi|159040989|ref|YP_001540241.1| - 0.0024 17.6 7.4 0.15 11.8 0.1 3.4 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding Syntaxin PF00804.20 gi|159040989|ref|YP_001540241.1| - 0.0025 17.9 1.3 0.27 11.4 0.9 2.5 1 1 0 1 1 1 1 Syntaxin Mod_r PF07200.8 gi|159040989|ref|YP_001540241.1| - 0.0029 17.5 1.9 1.1 9.1 0.0 2.8 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein WXG100 PF06013.7 gi|159040989|ref|YP_001540241.1| - 0.0034 17.3 0.7 4.2 7.4 0.1 3.2 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Myosin_tail_1 PF01576.14 gi|159040989|ref|YP_001540241.1| - 0.0037 15.0 1.0 0.0058 14.4 0.7 1.3 1 0 0 1 1 1 1 Myosin tail BLOC1_2 PF10046.4 gi|159040989|ref|YP_001540241.1| - 0.0039 17.3 4.9 0.52 10.4 0.1 3.0 2 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mnd1 PF03962.10 gi|159040989|ref|YP_001540241.1| - 0.0044 16.6 0.0 0.01 15.5 0.0 1.6 1 1 0 1 1 1 1 Mnd1 family Fib_alpha PF08702.5 gi|159040989|ref|YP_001540241.1| - 0.0045 17.1 3.7 0.31 11.1 1.1 2.1 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family MscS_porin PF12795.2 gi|159040989|ref|YP_001540241.1| - 0.0056 16.0 3.3 0.029 13.6 1.0 2.1 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain DUF883 PF05957.8 gi|159040989|ref|YP_001540241.1| - 0.0058 17.0 0.2 2.9 8.3 0.0 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Latarcin PF10279.4 gi|159040989|ref|YP_001540241.1| - 0.0061 16.7 6.0 0.89 9.7 1.0 3.1 2 1 1 3 3 3 1 Latarcin precursor ZapA PF05164.8 gi|159040989|ref|YP_001540241.1| - 0.0062 16.4 4.6 0.72 9.8 0.9 2.9 2 1 1 3 3 3 1 Cell division protein ZapA WEMBL PF05701.6 gi|159040989|ref|YP_001540241.1| - 0.007 14.8 1.1 0.019 13.4 0.8 1.6 1 1 0 1 1 1 1 Weak chloroplast movement under blue light APG6 PF04111.7 gi|159040989|ref|YP_001540241.1| - 0.0075 15.3 0.3 0.028 13.4 0.0 1.7 1 1 1 2 2 2 1 Autophagy protein Apg6 Prefoldin PF02996.12 gi|159040989|ref|YP_001540241.1| - 0.0077 15.8 3.6 10 5.8 0.1 3.4 2 1 1 3 3 3 0 Prefoldin subunit DUF948 PF06103.6 gi|159040989|ref|YP_001540241.1| - 0.0086 15.9 2.8 2.8 7.8 0.3 2.9 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.1 gi|159040989|ref|YP_001540241.1| - 0.0088 16.0 1.7 6.5 6.8 0.0 2.6 2 1 0 2 2 2 0 Syntaxin-like protein RRF_GI PF12614.3 gi|159040989|ref|YP_001540241.1| - 0.0095 15.7 0.7 0.082 12.7 0.0 2.5 1 1 2 3 3 3 1 Ribosome recycling factor STAT_alpha PF01017.15 gi|159040989|ref|YP_001540241.1| - 0.0097 15.6 0.2 0.027 14.2 0.1 1.8 1 1 0 1 1 1 1 STAT protein, all-alpha domain Pox_A_type_inc PF04508.7 gi|159040989|ref|YP_001540241.1| - 0.01 15.5 8.4 16 5.5 0.3 5.3 3 2 2 5 5 5 0 Viral A-type inclusion protein repeat FlgN PF05130.7 gi|159040989|ref|YP_001540241.1| - 0.01 16.0 3.9 0.77 9.9 0.0 2.3 1 1 1 2 2 2 0 FlgN protein Erythro-docking PF09277.6 gi|159040989|ref|YP_001540241.1| - 0.012 15.2 0.5 3.1 7.5 0.0 3.1 3 0 0 3 3 3 0 Erythronolide synthase, docking Prominin PF05478.6 gi|159040989|ref|YP_001540241.1| - 0.013 13.1 2.4 0.11 10.0 0.6 2.1 1 1 1 2 2 2 0 Prominin FlaC_arch PF05377.6 gi|159040989|ref|YP_001540241.1| - 0.016 15.0 9.5 1.4 8.8 0.2 4.1 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) HSBP1 PF06825.7 gi|159040989|ref|YP_001540241.1| - 0.017 14.7 5.0 0.7 9.5 0.9 3.8 3 2 0 3 3 3 0 Heat shock factor binding protein 1 Snapin_Pallidin PF14712.1 gi|159040989|ref|YP_001540241.1| - 0.017 15.4 4.7 1.8 8.9 1.2 2.9 1 1 0 2 2 2 0 Snapin/Pallidin IF-2B PF01008.12 gi|159040989|ref|YP_001540241.1| - 0.019 13.9 1.5 0.19 10.6 0.3 2.0 2 0 0 2 2 2 0 Initiation factor 2 subunit family DivIC PF04977.10 gi|159040989|ref|YP_001540241.1| - 0.019 14.4 2.6 3.9 7.0 0.1 3.6 1 1 3 4 4 4 0 Septum formation initiator GLE1 PF07817.8 gi|159040989|ref|YP_001540241.1| - 0.019 13.9 0.1 0.091 11.6 0.0 1.8 1 1 1 2 2 2 0 GLE1-like protein DUF342 PF03961.8 gi|159040989|ref|YP_001540241.1| - 0.02 13.3 3.2 0.22 9.8 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Sec34 PF04136.10 gi|159040989|ref|YP_001540241.1| - 0.02 14.5 3.4 0.58 9.8 1.0 2.3 1 1 0 2 2 2 0 Sec34-like family DUF4200 PF13863.1 gi|159040989|ref|YP_001540241.1| - 0.02 14.8 0.5 1 9.3 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DUF972 PF06156.8 gi|159040989|ref|YP_001540241.1| - 0.023 15.0 4.9 3.1 8.2 0.0 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) AAA_13 PF13166.1 gi|159040989|ref|YP_001540241.1| - 0.026 12.9 0.7 0.92 7.8 0.2 1.6 1 1 1 2 2 2 0 AAA domain Lipoprotein_7 PF01540.11 gi|159040989|ref|YP_001540241.1| - 0.028 13.5 0.9 1.9 7.5 0.1 2.1 1 1 1 2 2 2 0 Adhesin lipoprotein Flagellin_C PF00700.16 gi|159040989|ref|YP_001540241.1| - 0.028 14.5 3.7 2 8.6 0.7 3.2 1 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region ING PF12998.2 gi|159040989|ref|YP_001540241.1| - 0.032 14.5 1.6 0.38 11.0 1.0 2.5 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Arfaptin PF06456.8 gi|159040989|ref|YP_001540241.1| - 0.037 13.3 0.3 1.7 7.9 0.0 2.1 1 1 1 2 2 2 0 Arfaptin-like domain HalX PF08663.5 gi|159040989|ref|YP_001540241.1| - 0.039 13.9 4.5 21 5.2 0.0 4.0 3 1 1 4 4 4 0 HalX domain APG17 PF04108.7 gi|159040989|ref|YP_001540241.1| - 0.04 12.7 3.2 0.28 9.9 2.1 2.0 1 1 0 1 1 1 0 Autophagy protein Apg17 F_actin_bind PF08919.5 gi|159040989|ref|YP_001540241.1| - 0.045 13.4 3.2 3.5 7.3 0.0 2.9 2 1 0 2 2 2 0 F-actin binding DUF1423 PF07227.6 gi|159040989|ref|YP_001540241.1| - 0.047 12.3 0.4 0.1 11.2 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1423) Vps5 PF09325.5 gi|159040989|ref|YP_001540241.1| - 0.056 12.6 5.9 0.9 8.7 0.1 2.2 1 1 1 2 2 2 0 Vps5 C terminal like Nup54 PF13874.1 gi|159040989|ref|YP_001540241.1| - 0.056 13.1 3.5 2.3 7.8 1.1 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF4559 PF15112.1 gi|159040989|ref|YP_001540241.1| - 0.077 12.1 4.4 1.2 8.2 1.3 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4559) DUF2746 PF10874.3 gi|159040989|ref|YP_001540241.1| - 0.08 13.1 4.3 0.47 10.6 0.1 3.2 3 2 0 3 3 3 0 Protein of unknown function (DUF2746) CCDC-167 PF15188.1 gi|159040989|ref|YP_001540241.1| - 0.083 12.8 4.7 0.47 10.4 0.2 3.3 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 Laminin_I PF06008.9 gi|159040989|ref|YP_001540241.1| - 0.093 12.0 5.9 1.8 7.8 2.5 2.8 1 1 0 1 1 1 0 Laminin Domain I DUF3450 PF11932.3 gi|159040989|ref|YP_001540241.1| - 0.098 11.9 1.9 1.6 7.8 0.5 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Tup_N PF08581.5 gi|159040989|ref|YP_001540241.1| - 0.1 12.7 2.7 6.1 7.1 0.1 2.9 2 1 1 3 3 3 0 Tup N-terminal Mer2 PF09074.5 gi|159040989|ref|YP_001540241.1| - 0.1 12.4 5.1 0.24 11.3 1.3 2.1 1 1 1 2 2 2 0 Mer2 IFT57 PF10498.4 gi|159040989|ref|YP_001540241.1| - 0.11 11.2 2.6 1 8.0 0.8 1.9 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 ORF6C PF10552.4 gi|159040989|ref|YP_001540241.1| - 0.12 12.1 1.1 1.6 8.5 0.0 2.7 1 1 2 3 3 3 0 ORF6C domain DUF3552 PF12072.3 gi|159040989|ref|YP_001540241.1| - 0.12 11.5 2.0 0.57 9.3 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) AKNA PF12443.3 gi|159040989|ref|YP_001540241.1| - 0.13 12.3 0.2 22 5.1 0.0 2.8 2 1 1 3 3 3 0 AT-hook-containing transcription factor DASH_Dad3 PF08656.5 gi|159040989|ref|YP_001540241.1| - 0.14 11.8 8.7 0.45 10.2 0.3 3.6 1 1 1 3 3 3 0 DASH complex subunit Dad3 UPF0118 PF01594.11 gi|159040989|ref|YP_001540241.1| - 0.18 10.7 0.5 0.54 9.2 0.3 1.7 1 1 1 2 2 2 0 Domain of unknown function DUF20 ADIP PF11559.3 gi|159040989|ref|YP_001540241.1| - 0.19 11.6 4.0 6.9 6.5 1.3 2.2 1 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF848 PF05852.6 gi|159040989|ref|YP_001540241.1| - 0.19 11.5 3.0 11 5.8 0.2 2.5 1 1 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) LOH1CR12 PF10158.4 gi|159040989|ref|YP_001540241.1| - 0.23 11.2 1.6 11 5.7 1.0 2.4 1 1 0 1 1 1 0 Tumour suppressor protein DivIVA PF05103.8 gi|159040989|ref|YP_001540241.1| - 0.32 11.0 3.7 7.6 6.5 0.1 2.6 2 1 1 3 3 2 0 DivIVA protein DUF2205 PF10224.4 gi|159040989|ref|YP_001540241.1| - 0.34 10.5 5.9 0.45 10.1 0.1 3.3 3 2 1 4 4 3 0 Predicted coiled-coil protein (DUF2205) Bacillus_HBL PF05791.6 gi|159040989|ref|YP_001540241.1| - 0.39 10.0 3.9 4.9 6.4 1.1 2.2 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Tropomyosin PF00261.15 gi|159040989|ref|YP_001540241.1| - 0.44 9.5 5.7 2.6 7.0 1.2 2.9 1 1 0 1 1 1 0 Tropomyosin DUF3907 PF13047.1 gi|159040989|ref|YP_001540241.1| - 0.52 9.9 2.3 0.97 9.0 0.3 2.2 2 1 1 3 3 2 0 Protein of unknown function (DUF3907) Med11 PF10280.4 gi|159040989|ref|YP_001540241.1| - 0.68 10.0 3.9 0.98 9.4 1.5 2.1 2 1 0 2 2 1 0 Mediator complex protein bZIP_1 PF00170.16 gi|159040989|ref|YP_001540241.1| - 1 9.4 9.3 5.9 6.9 0.1 3.2 3 0 0 3 3 3 0 bZIP transcription factor DUF904 PF06005.7 gi|159040989|ref|YP_001540241.1| - 1.1 9.5 6.1 17 5.7 4.3 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF904) BBP1_C PF15272.1 gi|159040989|ref|YP_001540241.1| - 1.4 8.3 6.4 3.4 7.1 2.0 2.1 2 0 0 2 2 2 0 Spindle pole body component BBP1, C-terminal TSC22 PF01166.13 gi|159040989|ref|YP_001540241.1| - 3.8 7.5 6.7 4.8 7.2 0.3 3.2 2 1 1 3 3 3 0 TSC-22/dip/bun family Cep57_CLD_2 PF14197.1 gi|159040989|ref|YP_001540241.1| - 5.6 6.9 9.1 2.4 8.1 0.1 3.3 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 Mrr_cat PF04471.7 gi|159040990|ref|YP_001540242.1| - 1.1e-05 25.2 0.0 1.7e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.6 gi|159040990|ref|YP_001540242.1| - 0.037 14.3 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain GP46 PF07409.7 gi|159040990|ref|YP_001540242.1| - 0.065 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Phage protein GP46 Gmad2 PF10648.4 gi|159040990|ref|YP_001540242.1| - 0.086 13.0 0.0 0.22 11.7 0.0 1.6 2 0 0 2 2 2 0 Immunoglobulin-like domain of bacterial spore germination Glyco_hydro_1 PF00232.13 gi|159040991|ref|YP_001540243.1| - 3.9e-62 209.9 8.1 3.4e-55 187.0 3.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_cc PF11790.3 gi|159040991|ref|YP_001540243.1| - 0.016 14.6 0.2 0.033 13.6 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase catalytic core Methyltransf_11 PF08241.7 gi|159040992|ref|YP_001540244.1| - 6.1e-13 49.0 0.0 1e-12 48.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159040992|ref|YP_001540244.1| - 1.4e-05 24.7 0.0 5.6e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159040992|ref|YP_001540244.1| - 5e-05 23.7 0.0 0.00011 22.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159040992|ref|YP_001540244.1| - 0.00012 22.6 0.0 0.00055 20.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|159040992|ref|YP_001540244.1| - 0.00048 19.5 0.0 0.00078 18.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.1 gi|159040992|ref|YP_001540244.1| - 0.00067 19.4 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159040992|ref|YP_001540244.1| - 0.0076 15.3 0.0 0.012 14.7 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|159040992|ref|YP_001540244.1| - 0.05 13.2 0.1 0.11 12.0 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase PadR PF03551.9 gi|159040994|ref|YP_001540246.1| - 1.7e-16 59.7 0.0 2.7e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.1 gi|159040994|ref|YP_001540246.1| - 0.0022 17.6 0.4 0.012 15.2 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4364) DUF505 PF04458.7 gi|159040994|ref|YP_001540246.1| - 0.0084 14.2 0.0 0.011 13.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_42 PF06224.7 gi|159040994|ref|YP_001540246.1| - 0.08 12.2 0.0 0.085 12.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|159040994|ref|YP_001540246.1| - 0.09 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|159040994|ref|YP_001540246.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HMG-CoA_red PF00368.13 gi|159040995|ref|YP_001540247.1| - 1.1e-145 485.0 0.4 1.3e-145 484.8 0.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Fic PF02661.13 gi|159040995|ref|YP_001540247.1| - 0.029 15.0 0.0 0.071 13.8 0.0 1.7 1 0 0 1 1 1 0 Fic/DOC family Hexapep PF00132.19 gi|159040996|ref|YP_001540248.1| - 9.2e-29 97.6 33.7 3.7e-07 29.3 1.4 5.5 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|159040996|ref|YP_001540248.1| - 9.7e-15 53.8 34.2 7.9e-06 25.3 4.6 6.4 2 2 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase DUF2613 PF11021.3 gi|159040996|ref|YP_001540248.1| - 0.19 11.4 3.5 0.75 9.5 2.4 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) Cpn10 PF00166.16 gi|159040996|ref|YP_001540248.1| - 2 8.3 6.0 2.8 7.9 0.5 2.9 1 1 1 2 2 2 0 Chaperonin 10 Kd subunit DUF759 PF05537.6 gi|159040997|ref|YP_001540249.1| - 0.034 12.9 0.0 0.046 12.4 0.0 1.3 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) FlhD PF05247.8 gi|159040997|ref|YP_001540249.1| - 0.059 13.3 0.3 0.36 10.8 0.0 2.2 2 1 0 2 2 2 0 Flagellar transcriptional activator (FlhD) DUF2356 PF10189.4 gi|159040997|ref|YP_001540249.1| - 0.074 12.1 0.0 0.097 11.7 0.0 1.2 1 0 0 1 1 1 0 Conserved protein (DUF2356) Lactamase_B_2 PF12706.2 gi|159040998|ref|YP_001540250.1| - 2.2e-30 105.6 0.0 2.5e-30 105.4 0.0 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|159040998|ref|YP_001540250.1| - 1.4e-14 54.1 0.7 2e-14 53.6 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|159040998|ref|YP_001540250.1| - 1.8e-07 30.9 0.0 3.1e-07 30.2 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain IF3_N PF05198.11 gi|159040998|ref|YP_001540250.1| - 0.037 13.9 0.0 0.28 11.1 0.0 2.2 1 1 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain DUF1628 PF07790.6 gi|159041001|ref|YP_001540253.1| - 0.016 15.9 1.0 0.016 15.9 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) Arch_flagellin PF01917.11 gi|159041001|ref|YP_001540253.1| - 0.087 12.4 7.7 0.33 10.5 5.3 1.9 1 1 0 1 1 1 0 Archaebacterial flagellin DUF2614 PF11023.3 gi|159041001|ref|YP_001540253.1| - 3.3 7.5 4.9 0.61 9.8 0.4 1.9 2 1 0 3 3 3 0 Protein of unknown function (DUF2614) Asp_decarbox PF02261.11 gi|159041002|ref|YP_001540254.1| - 0.09 12.3 0.2 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 Aspartate decarboxylase MNSV_P7B PF06692.6 gi|159041002|ref|YP_001540254.1| - 1.4 8.7 4.2 8.7 6.2 0.3 2.7 1 1 1 2 2 2 0 Melon necrotic spot virus P7B protein Col_cuticle_N PF01484.12 gi|159041002|ref|YP_001540254.1| - 3.5 7.4 5.1 7.2 6.3 3.5 1.5 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain CoA_trans PF01144.18 gi|159041004|ref|YP_001540256.1| - 9.8e-39 132.7 0.2 5e-35 120.6 0.0 3.3 4 0 0 4 4 4 3 Coenzyme A transferase UbiD PF01977.11 gi|159041005|ref|YP_001540257.1| - 8.2e-110 367.0 0.0 9.4e-110 366.8 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase T2SF PF00482.18 gi|159041006|ref|YP_001540258.1| - 0.033 14.1 0.8 0.033 14.1 0.6 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|159041007|ref|YP_001540259.1| - 9.7e-53 178.8 0.0 1.6e-52 178.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_21 PF13304.1 gi|159041007|ref|YP_001540259.1| - 5.3e-05 23.3 1.3 0.0002 21.4 0.0 2.4 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|159041007|ref|YP_001540259.1| - 9.2e-05 22.7 0.0 0.00028 21.1 0.0 1.8 2 0 0 2 2 1 1 ABC transporter AAA_29 PF13555.1 gi|159041007|ref|YP_001540259.1| - 9.7e-05 21.8 0.0 0.00022 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|159041007|ref|YP_001540259.1| - 0.00012 22.4 1.8 0.00013 22.4 0.2 1.7 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|159041007|ref|YP_001540259.1| - 0.00034 20.6 0.0 0.00091 19.2 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|159041007|ref|YP_001540259.1| - 0.00096 19.9 3.2 0.0022 18.7 0.8 2.8 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|159041007|ref|YP_001540259.1| - 0.0013 19.0 0.4 0.0087 16.3 0.0 2.5 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|159041007|ref|YP_001540259.1| - 0.0018 17.9 0.0 0.0039 16.9 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|159041007|ref|YP_001540259.1| - 0.0022 17.4 0.5 0.0039 16.6 0.1 1.6 2 0 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|159041007|ref|YP_001540259.1| - 0.0051 16.7 0.0 0.0095 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|159041007|ref|YP_001540259.1| - 0.0066 15.6 0.0 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|159041007|ref|YP_001540259.1| - 0.0076 15.9 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|159041007|ref|YP_001540259.1| - 0.0089 15.9 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|159041007|ref|YP_001540259.1| - 0.012 15.0 0.2 0.064 12.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|159041007|ref|YP_001540259.1| - 0.016 14.7 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_2 PF07724.9 gi|159041007|ref|YP_001540259.1| - 0.019 14.8 0.0 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|159041007|ref|YP_001540259.1| - 0.024 14.3 0.5 0.19 11.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|159041007|ref|YP_001540259.1| - 0.025 14.6 0.0 0.066 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|159041007|ref|YP_001540259.1| - 0.027 13.9 0.1 0.07 12.5 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|159041007|ref|YP_001540259.1| - 0.034 13.2 0.0 0.072 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|159041007|ref|YP_001540259.1| - 0.037 13.5 0.0 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|159041007|ref|YP_001540259.1| - 0.039 13.5 0.3 0.53 9.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|159041007|ref|YP_001540259.1| - 0.045 12.9 0.0 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NACHT PF05729.7 gi|159041007|ref|YP_001540259.1| - 0.071 12.7 0.1 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|159041007|ref|YP_001540259.1| - 0.075 12.4 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|159041007|ref|YP_001540259.1| - 0.087 12.6 0.0 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|159041007|ref|YP_001540259.1| - 0.093 11.3 0.1 0.18 10.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.1 gi|159041007|ref|YP_001540259.1| - 0.14 11.6 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|159041007|ref|YP_001540259.1| - 0.23 10.9 1.1 0.3 10.5 0.1 1.6 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation T2SF PF00482.18 gi|159041008|ref|YP_001540260.1| - 6.8e-10 38.9 1.9 6.8e-10 38.9 1.3 2.5 3 1 0 3 3 3 1 Type II secretion system (T2SS), protein F Oxidored_q4 PF00507.14 gi|159041009|ref|YP_001540261.1| - 0.0032 17.2 5.4 0.0081 15.9 3.7 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Complex1_30kDa PF00329.14 gi|159041010|ref|YP_001540262.1| - 2.5e-23 82.2 0.0 4.3e-23 81.4 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|159041010|ref|YP_001540262.1| - 5.2e-21 74.6 0.2 7.8e-21 74.0 0.1 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|159041011|ref|YP_001540263.1| - 3.1e-57 193.6 0.0 3.8e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDK PF00334.14 gi|159041012|ref|YP_001540264.1| - 1.3e-42 144.7 0.0 1.5e-24 86.3 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Aldo_ket_red PF00248.16 gi|159041013|ref|YP_001540265.1| - 2.7e-78 262.6 0.0 3e-78 262.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family S19 PF06756.6 gi|159041013|ref|YP_001540265.1| - 0.072 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Chorion protein S19 C-terminal GFO_IDH_MocA PF01408.17 gi|159041014|ref|YP_001540266.1| - 5.9e-32 110.7 0.5 1.7e-31 109.2 0.3 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041014|ref|YP_001540266.1| - 1.1e-05 25.1 0.0 2.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|159041014|ref|YP_001540266.1| - 0.00034 19.7 0.2 0.00053 19.0 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_3 PF03447.11 gi|159041014|ref|YP_001540266.1| - 0.0062 16.9 0.2 0.01 16.2 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|159041014|ref|YP_001540266.1| - 0.02 15.2 0.8 0.031 14.5 0.0 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.19 gi|159041015|ref|YP_001540267.1| - 1.8e-22 79.7 0.1 2.6e-22 79.1 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|159041015|ref|YP_001540267.1| - 0.035 13.6 0.1 0.11 12.0 0.1 1.8 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus AP_endonuc_2 PF01261.19 gi|159041016|ref|YP_001540268.1| - 1.2e-27 96.6 0.0 1.7e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GFO_IDH_MocA PF01408.17 gi|159041017|ref|YP_001540269.1| - 5.6e-29 101.0 0.6 8.9e-29 100.4 0.4 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041017|ref|YP_001540269.1| - 2.4e-08 33.7 0.1 4.2e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|159041017|ref|YP_001540269.1| - 1.8e-05 24.2 0.5 0.18 11.2 0.0 2.8 1 1 1 2 2 2 2 Putative oxidoreductase C terminal NAD_binding_3 PF03447.11 gi|159041017|ref|YP_001540269.1| - 3.6e-05 24.1 0.9 9.9e-05 22.7 0.3 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|159041017|ref|YP_001540269.1| - 0.021 13.9 0.0 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|159041017|ref|YP_001540269.1| - 0.043 14.1 0.1 0.088 13.1 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Phage_Gp19 PF09355.5 gi|159041017|ref|YP_001540269.1| - 0.069 12.9 0.4 0.92 9.3 0.0 2.5 3 0 0 3 3 3 0 Phage protein Gp19/Gp15/Gp42 AP_endonuc_2 PF01261.19 gi|159041018|ref|YP_001540270.1| - 2e-22 79.5 0.1 2.6e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|159041018|ref|YP_001540270.1| - 0.014 14.9 0.1 0.031 13.8 0.1 1.5 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus Cellulase PF00150.13 gi|159041018|ref|YP_001540270.1| - 0.09 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) DUF325 PF03804.8 gi|159041018|ref|YP_001540270.1| - 0.23 11.1 1.1 1 9.1 0.2 2.4 2 0 0 2 2 2 0 Viral domain of unknown function NAD_kinase PF01513.16 gi|159041019|ref|YP_001540271.1| - 1.3e-33 116.0 0.1 1.6e-33 115.6 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|159041019|ref|YP_001540271.1| - 0.08 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Glyco_tran_WecB PF03808.8 gi|159041019|ref|YP_001540271.1| - 0.14 11.5 0.0 8.8 5.7 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family PIN PF01850.16 gi|159041020|ref|YP_001540272.1| - 0.0046 17.2 0.2 0.01 16.1 0.2 1.6 1 1 0 1 1 1 1 PIN domain Fcf1 PF04900.7 gi|159041020|ref|YP_001540272.1| - 0.056 13.5 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 Fcf1 5_3_exonuc_N PF02739.11 gi|159041020|ref|YP_001540272.1| - 0.092 12.1 0.3 0.098 12.0 0.2 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain STT3 PF02516.9 gi|159041021|ref|YP_001540273.1| - 1.1e-15 57.6 56.1 4e-15 55.7 38.9 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit ETF_alpha PF00766.14 gi|159041022|ref|YP_001540274.1| - 3.3e-29 100.3 0.0 7.2e-29 99.2 0.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|159041022|ref|YP_001540274.1| - 1.2e-07 31.5 0.0 4.8e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF PF01012.16 gi|159041023|ref|YP_001540275.1| - 2.8e-33 114.9 1.4 4.2e-33 114.3 1.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Peptidase_M32 PF02074.10 gi|159041024|ref|YP_001540276.1| - 1.4e-164 548.4 0.5 1.7e-164 548.1 0.4 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF1640 PF07798.6 gi|159041024|ref|YP_001540276.1| - 0.13 12.3 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) SIR2 PF02146.12 gi|159041025|ref|YP_001540277.1| - 6e-50 169.4 0.0 7.2e-50 169.1 0.0 1.1 1 0 0 1 1 1 1 Sir2 family DUF2039 PF10217.4 gi|159041025|ref|YP_001540277.1| - 0.0036 17.2 0.1 0.0057 16.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2039) zf-CSL PF05207.8 gi|159041025|ref|YP_001540277.1| - 0.031 13.7 0.1 0.068 12.6 0.0 1.5 1 0 0 1 1 1 0 CSL zinc finger DZR PF12773.2 gi|159041025|ref|YP_001540277.1| - 0.065 13.0 0.4 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|159041025|ref|YP_001540277.1| - 0.066 13.1 1.3 0.14 12.0 0.9 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|159041025|ref|YP_001540277.1| - 0.11 12.2 1.9 3 7.5 0.0 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Lipase_GDSL_2 PF13472.1 gi|159041026|ref|YP_001540278.1| - 2.8e-23 82.9 0.0 3.1e-23 82.8 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|159041026|ref|YP_001540278.1| - 1.4e-11 44.6 0.0 1.9e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Glycos_transf_1 PF00534.15 gi|159041027|ref|YP_001540279.1| - 1.5e-46 157.9 0.0 2.4e-46 157.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159041027|ref|YP_001540279.1| - 6.3e-22 78.1 0.0 2.3e-21 76.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|159041027|ref|YP_001540279.1| - 1.5e-19 70.4 3.7 8.4e-18 64.7 2.6 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.1 gi|159041027|ref|YP_001540279.1| - 8.3e-19 68.2 0.0 1.5e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|159041027|ref|YP_001540279.1| - 1.2e-12 47.8 0.8 2.1e-12 47.1 0.6 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|159041027|ref|YP_001540279.1| - 6.5e-11 42.3 0.0 1.2e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.8 gi|159041027|ref|YP_001540279.1| - 0.0025 16.1 0.1 0.19 9.9 0.0 2.1 2 0 0 2 2 2 2 Glycogen synthase Glyco_trans_4_4 PF13579.1 gi|159041028|ref|YP_001540280.1| - 2e-05 24.8 0.0 2.7e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|159041028|ref|YP_001540280.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like HSP20 PF00011.16 gi|159041029|ref|YP_001540281.1| - 2.3e-13 49.8 0.0 3.2e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|159041029|ref|YP_001540281.1| - 0.066 13.7 0.0 0.27 11.8 0.0 1.9 1 1 0 1 1 1 0 CS domain Phage_DNA_bind PF02303.12 gi|159041029|ref|YP_001540281.1| - 0.07 13.1 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-destabilising protein Pox_A_type_inc PF04508.7 gi|159041029|ref|YP_001540281.1| - 0.11 12.2 0.9 0.28 11.0 0.6 1.7 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat PhoU PF01895.14 gi|159041030|ref|YP_001540282.1| - 1.4e-15 57.4 7.5 4.7e-13 49.3 1.2 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|159041030|ref|YP_001540282.1| - 6.7e-14 51.2 0.2 2.2e-13 49.5 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE TOBE PF03459.12 gi|159041030|ref|YP_001540282.1| - 0.0021 18.1 0.0 0.0053 16.8 0.0 1.6 1 0 0 1 1 1 1 TOBE domain NCD1 PF04904.8 gi|159041030|ref|YP_001540282.1| - 0.023 14.4 0.3 0.25 11.1 0.0 2.5 2 1 1 3 3 3 0 NAB conserved region 1 (NCD1) MTS PF05175.9 gi|159041031|ref|YP_001540283.1| - 8.8e-07 28.4 0.0 1.2e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|159041031|ref|YP_001540283.1| - 7.9e-05 22.6 0.0 9.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041031|ref|YP_001540283.1| - 0.00032 20.3 0.1 0.00041 19.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|159041031|ref|YP_001540283.1| - 0.00035 19.6 0.0 0.00047 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|159041031|ref|YP_001540283.1| - 0.0014 18.9 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041031|ref|YP_001540283.1| - 0.094 13.3 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RNA_pol_Rpb2_6 PF00562.23 gi|159041032|ref|YP_001540284.1| - 7.2e-126 420.0 0.0 1e-125 419.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|159041032|ref|YP_001540284.1| - 1.9e-52 177.1 0.0 2.7e-52 176.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.11 gi|159041032|ref|YP_001540284.1| - 7e-28 96.1 0.1 1.4e-27 95.2 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|159041032|ref|YP_001540284.1| - 3.1e-27 94.6 0.0 6.4e-27 93.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.9 gi|159041032|ref|YP_001540284.1| - 1.9e-23 82.8 0.0 4.6e-23 81.6 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.8 gi|159041032|ref|YP_001540284.1| - 1e-19 70.0 2.3 1e-19 70.0 1.6 2.5 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|159041032|ref|YP_001540284.1| - 5.5e-11 42.2 0.4 1.6e-10 40.8 0.2 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DUF2070 PF09843.4 gi|159041033|ref|YP_001540285.1| - 1.4e-42 145.1 0.0 2.4e-42 144.4 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) AdoMet_dc PF02675.10 gi|159041034|ref|YP_001540286.1| - 5.3e-33 113.0 0.0 6e-33 112.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase mRNA_stabil PF13929.1 gi|159041034|ref|YP_001540286.1| - 0.14 11.1 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 mRNA stabilisation Phos_pyr_kin PF08543.7 gi|159041035|ref|YP_001540287.1| - 7.8e-96 320.0 0.1 1.1e-95 319.5 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|159041035|ref|YP_001540287.1| - 3e-16 59.4 0.1 4.2e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|159041035|ref|YP_001540287.1| - 0.009 15.2 0.1 0.022 13.9 0.1 1.7 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|159041035|ref|YP_001540287.1| - 0.012 14.9 0.4 0.02 14.1 0.3 1.4 1 1 0 1 1 1 0 Carbohydrate kinase MarR PF01047.17 gi|159041036|ref|YP_001540288.1| - 1.1e-11 44.1 0.4 2.4e-11 43.1 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|159041036|ref|YP_001540288.1| - 2.9e-10 39.7 0.1 5.3e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|159041036|ref|YP_001540288.1| - 8e-10 38.2 0.1 1.3e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|159041036|ref|YP_001540288.1| - 2.5e-08 33.1 0.6 4.4e-08 32.3 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|159041036|ref|YP_001540288.1| - 5.1e-07 29.2 0.5 9.5e-07 28.3 0.2 1.6 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|159041036|ref|YP_001540288.1| - 1.1e-05 25.0 0.1 1.8e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|159041036|ref|YP_001540288.1| - 2.1e-05 24.4 0.3 2.9e-05 24.0 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|159041036|ref|YP_001540288.1| - 3.5e-05 23.4 0.2 6.6e-05 22.5 0.0 1.5 2 0 0 2 2 1 1 MarR family B-block_TFIIIC PF04182.7 gi|159041036|ref|YP_001540288.1| - 6.4e-05 22.7 0.1 0.00015 21.5 0.1 1.7 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|159041036|ref|YP_001540288.1| - 0.00029 21.0 0.1 0.0004 20.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|159041036|ref|YP_001540288.1| - 0.00031 20.2 0.2 0.0005 19.5 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HxlR PF01638.12 gi|159041036|ref|YP_001540288.1| - 0.00056 19.4 0.1 0.00068 19.2 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|159041036|ref|YP_001540288.1| - 0.0006 19.4 0.0 0.00093 18.8 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|159041036|ref|YP_001540288.1| - 0.0006 19.3 0.2 0.0018 17.8 0.0 1.8 1 1 1 2 2 2 1 Homeodomain-like domain HTH_30 PF13556.1 gi|159041036|ref|YP_001540288.1| - 0.00098 18.6 0.4 0.01 15.4 0.1 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.1 gi|159041036|ref|YP_001540288.1| - 0.0013 18.6 0.1 0.0025 17.7 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|159041036|ref|YP_001540288.1| - 0.002 17.8 0.2 0.0032 17.2 0.1 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|159041036|ref|YP_001540288.1| - 0.0026 17.5 0.5 0.0042 16.8 0.3 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix Phage_rep_org_N PF09681.5 gi|159041036|ref|YP_001540288.1| - 0.003 17.1 0.1 0.0031 17.0 0.0 1.1 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_AsnC-type PF13404.1 gi|159041036|ref|YP_001540288.1| - 0.0058 16.1 0.1 0.0092 15.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DUF2250 PF10007.4 gi|159041036|ref|YP_001540288.1| - 0.0058 16.5 2.7 0.015 15.1 0.5 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|159041036|ref|YP_001540288.1| - 0.01 15.3 0.2 0.018 14.5 0.1 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|159041036|ref|YP_001540288.1| - 0.011 15.1 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.11 gi|159041036|ref|YP_001540288.1| - 0.016 15.2 0.1 0.024 14.7 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor FeoC PF09012.5 gi|159041036|ref|YP_001540288.1| - 0.019 14.6 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|159041036|ref|YP_001540288.1| - 0.021 14.9 0.2 0.028 14.5 0.2 1.3 1 0 0 1 1 1 0 Transcriptional regulator Replic_Relax PF13814.1 gi|159041036|ref|YP_001540288.1| - 0.024 14.5 0.5 0.03 14.1 0.3 1.2 1 0 0 1 1 1 0 Replication-relaxation DDE_Tnp_2 PF04693.7 gi|159041036|ref|YP_001540288.1| - 0.027 13.4 0.1 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 FaeA PF04703.7 gi|159041036|ref|YP_001540288.1| - 0.03 14.4 0.2 0.048 13.8 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_9 PF08221.6 gi|159041036|ref|YP_001540288.1| - 0.046 13.6 0.1 0.093 12.6 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_29 PF13551.1 gi|159041036|ref|YP_001540288.1| - 0.048 13.8 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2513 PF10711.4 gi|159041036|ref|YP_001540288.1| - 0.11 12.5 0.5 0.32 11.0 0.2 1.9 1 1 1 2 2 2 0 Hypothetical protein (DUF2513) Beta-Casp PF10996.3 gi|159041038|ref|YP_001540290.1| - 2.2e-30 105.1 0.0 4.9e-30 104.0 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|159041038|ref|YP_001540290.1| - 6.9e-22 78.0 0.9 1.4e-21 77.0 0.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|159041038|ref|YP_001540290.1| - 1.1e-10 41.4 0.2 3.3e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|159041038|ref|YP_001540290.1| - 2e-09 37.1 0.3 2.7e-08 33.4 0.0 2.9 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|159041038|ref|YP_001540290.1| - 0.00043 20.0 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain eIF-5a PF01287.15 gi|159041038|ref|YP_001540290.1| - 0.065 13.1 0.9 0.36 10.8 0.0 2.5 2 0 0 2 2 2 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold ABC_tran PF00005.22 gi|159041039|ref|YP_001540291.1| - 1.8e-30 106.0 0.0 2.4e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|159041039|ref|YP_001540291.1| - 1.1e-20 73.7 0.8 1.8e-20 73.0 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|159041039|ref|YP_001540291.1| - 6.4e-08 32.8 0.4 0.0002 21.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|159041039|ref|YP_001540291.1| - 0.00032 20.8 0.4 0.0027 17.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041039|ref|YP_001540291.1| - 0.00062 19.8 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|159041039|ref|YP_001540291.1| - 0.00076 18.9 0.2 0.0014 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|159041039|ref|YP_001540291.1| - 0.00082 19.6 0.0 0.0017 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|159041039|ref|YP_001540291.1| - 0.001 18.5 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|159041039|ref|YP_001540291.1| - 0.0029 17.3 0.1 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|159041039|ref|YP_001540291.1| - 0.0063 16.0 0.1 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family NACHT PF05729.7 gi|159041039|ref|YP_001540291.1| - 0.0085 15.7 0.7 0.028 14.0 0.2 2.0 1 1 1 2 2 2 1 NACHT domain DUF87 PF01935.12 gi|159041039|ref|YP_001540291.1| - 0.012 15.4 0.4 0.018 14.8 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF87 SMC_N PF02463.14 gi|159041039|ref|YP_001540291.1| - 0.013 14.7 0.3 1.5 7.9 0.0 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|159041039|ref|YP_001540291.1| - 0.028 13.9 0.1 0.057 12.9 0.1 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|159041039|ref|YP_001540291.1| - 0.032 15.0 0.3 0.076 13.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|159041039|ref|YP_001540291.1| - 0.036 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF2636 PF11120.3 gi|159041039|ref|YP_001540291.1| - 0.064 12.7 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2636) KaiC PF06745.8 gi|159041039|ref|YP_001540291.1| - 0.1 11.6 0.1 0.19 10.8 0.1 1.3 1 0 0 1 1 1 0 KaiC AAA_13 PF13166.1 gi|159041039|ref|YP_001540291.1| - 0.12 10.8 1.9 3.2 6.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|159041039|ref|YP_001540291.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|159041039|ref|YP_001540291.1| - 0.13 11.3 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Pox_A32 PF04665.7 gi|159041039|ref|YP_001540291.1| - 0.16 11.2 0.1 0.16 11.2 0.1 1.5 2 0 0 2 2 2 0 Poxvirus A32 protein APS_kinase PF01583.15 gi|159041039|ref|YP_001540291.1| - 0.16 11.6 0.1 0.36 10.4 0.0 1.6 2 0 0 2 2 1 0 Adenylylsulphate kinase GTP_EFTU_D4 PF14578.1 gi|159041040|ref|YP_001540292.1| - 5.8e-29 99.5 6.0 5.8e-29 99.5 4.2 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|159041040|ref|YP_001540292.1| - 1.8e-28 99.2 0.0 4.3e-27 94.7 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|159041040|ref|YP_001540292.1| - 4.1e-19 68.4 0.6 8.3e-19 67.4 0.4 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|159041040|ref|YP_001540292.1| - 1e-12 47.9 0.3 1e-12 47.9 0.2 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|159041040|ref|YP_001540292.1| - 8.1e-06 25.7 0.0 1.8e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|159041040|ref|YP_001540292.1| - 0.0021 18.5 0.0 0.0053 17.2 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|159041040|ref|YP_001540292.1| - 0.02 14.6 0.1 0.061 13.0 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|159041040|ref|YP_001540292.1| - 0.023 14.2 0.0 0.2 11.1 0.0 2.5 3 1 0 3 3 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|159041040|ref|YP_001540292.1| - 0.038 13.4 0.0 0.96 8.9 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|159041040|ref|YP_001540292.1| - 0.082 12.2 0.0 1.2 8.5 0.0 2.2 1 1 0 1 1 1 0 Ras family Proteasome PF00227.21 gi|159041041|ref|YP_001540293.1| - 2.5e-50 170.4 0.1 2.8e-50 170.2 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit FKBP_C PF00254.23 gi|159041042|ref|YP_001540294.1| - 7.4e-11 41.9 1.0 6e-10 39.0 0.7 2.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Usp PF00582.21 gi|159041042|ref|YP_001540294.1| - 0.15 12.2 3.4 11 6.2 0.6 2.8 3 0 0 3 3 3 0 Universal stress protein family DNA_pol3_a_NII PF11490.3 gi|159041042|ref|YP_001540294.1| - 0.31 10.6 10.8 0.054 13.1 3.5 2.3 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II APC_CDC26 PF10471.4 gi|159041042|ref|YP_001540294.1| - 9.6 7.0 12.6 23 5.7 8.1 2.0 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 Ribosomal_S17e PF00833.13 gi|159041043|ref|YP_001540295.1| - 5.7e-19 68.0 0.2 6.9e-19 67.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal S17 HemN_C PF06969.11 gi|159041044|ref|YP_001540296.1| - 0.02 14.9 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain RNA_pol_Rpb6 PF01192.17 gi|159041045|ref|YP_001540297.1| - 2.2e-11 43.3 0.1 5.6e-11 42.0 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb6 Glyco_hydro_42 PF02449.10 gi|159041046|ref|YP_001540298.1| - 2.7e-11 43.2 1.4 4.3e-11 42.5 1.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_14 PF01373.12 gi|159041046|ref|YP_001540298.1| - 4.4e-07 29.0 0.2 1.2e-05 24.2 0.1 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 14 Glyco_hydro_35 PF01301.14 gi|159041046|ref|YP_001540298.1| - 0.01 15.2 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 35 Glyco_hydro_12 PF01670.11 gi|159041047|ref|YP_001540299.1| - 8.1e-09 35.4 0.7 2e-08 34.1 0.5 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Rifin_STEVOR PF02009.11 gi|159041047|ref|YP_001540299.1| - 0.015 14.9 9.9 0.019 14.5 6.9 1.1 1 0 0 1 1 1 0 Rifin/stevor family GFO_IDH_MocA PF01408.17 gi|159041048|ref|YP_001540300.1| - 3.6e-19 69.4 0.0 5.7e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041048|ref|YP_001540300.1| - 7.8e-08 32.1 0.1 1.5e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain G6PD_N PF00479.17 gi|159041048|ref|YP_001540300.1| - 0.00091 19.4 0.0 0.0016 18.7 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain PTH2 PF01981.11 gi|159041049|ref|YP_001540301.1| - 7.6e-43 144.8 0.0 8.4e-43 144.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 VKOR PF07884.9 gi|159041050|ref|YP_001540302.1| - 1.1e-22 80.3 12.6 1.5e-22 79.9 8.7 1.1 1 0 0 1 1 1 1 Vitamin K epoxide reductase family CM2 PF03021.9 gi|159041050|ref|YP_001540302.1| - 0.063 12.8 1.3 0.21 11.1 0.2 2.3 1 1 0 1 1 1 0 Influenza C virus M2 protein Glyco_hydro_16 PF00722.16 gi|159041051|ref|YP_001540303.1| - 0.023 14.0 0.1 0.27 10.5 0.0 2.1 1 1 1 2 2 2 0 Glycosyl hydrolases family 16 zf-H2C2 PF09337.5 gi|159041051|ref|YP_001540303.1| - 0.036 13.4 1.9 2 7.8 0.0 3.2 4 0 0 4 4 4 0 His(2)-Cys(2) zinc finger MFS_1 PF07690.11 gi|159041052|ref|YP_001540304.1| - 2.4e-23 82.4 43.9 9.4e-16 57.4 22.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Potex_coat PF06184.6 gi|159041052|ref|YP_001540304.1| - 0.0079 15.5 0.2 0.027 13.8 0.0 1.8 2 0 0 2 2 2 1 Potexvirus coat protein MFS_1_like PF12832.2 gi|159041052|ref|YP_001540304.1| - 0.011 15.5 0.3 0.011 15.5 0.2 4.4 5 1 2 7 7 7 0 MFS_1 like family CMD PF02627.15 gi|159041053|ref|YP_001540305.1| - 5.3e-23 80.6 0.0 9.1e-23 79.9 0.0 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cupin_2 PF07883.6 gi|159041053|ref|YP_001540305.1| - 2.3e-09 36.6 1.1 3.4e-09 36.0 0.8 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|159041053|ref|YP_001540305.1| - 4.4e-06 26.2 0.2 6.8e-06 25.5 0.2 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|159041053|ref|YP_001540305.1| - 5e-06 26.2 0.2 9.5e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.11 gi|159041053|ref|YP_001540305.1| - 0.079 12.3 0.1 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Auxin binding protein Cupin_6 PF12852.2 gi|159041053|ref|YP_001540305.1| - 0.12 12.0 0.1 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Aldo_ket_red PF00248.16 gi|159041054|ref|YP_001540306.1| - 4.6e-79 265.1 0.0 5.2e-79 265.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family S19 PF06756.6 gi|159041054|ref|YP_001540306.1| - 0.076 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Chorion protein S19 C-terminal AIM24 PF01987.12 gi|159041055|ref|YP_001540307.1| - 1.9e-49 168.0 4.4 2.2e-49 167.8 3.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Translin PF01997.11 gi|159041056|ref|YP_001540308.1| - 2.4e-33 115.4 2.0 2.8e-33 115.2 1.4 1.0 1 0 0 1 1 1 1 Translin family RPN7 PF10602.4 gi|159041056|ref|YP_001540308.1| - 0.0058 16.0 0.3 0.0095 15.3 0.1 1.4 1 1 0 1 1 1 1 26S proteasome subunit RPN7 Sec5 PF15469.1 gi|159041056|ref|YP_001540308.1| - 0.04 13.6 1.5 0.18 11.5 0.1 2.2 2 1 0 2 2 2 0 Exocyst complex component Sec5 HisKA PF00512.20 gi|159041056|ref|YP_001540308.1| - 0.13 12.2 1.5 6.7 6.7 0.1 2.6 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain TatD_DNase PF01026.16 gi|159041057|ref|YP_001540309.1| - 3e-23 82.3 0.0 3.6e-23 82.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase zf-ZPR1 PF03367.8 gi|159041058|ref|YP_001540310.1| - 1.6e-26 92.3 0.0 1.9e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|159041058|ref|YP_001540310.1| - 0.06 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar Nop10p PF04135.7 gi|159041058|ref|YP_001540310.1| - 0.14 11.8 0.1 0.42 10.3 0.1 1.7 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Rad50_zn_hook PF04423.9 gi|159041058|ref|YP_001540310.1| - 0.17 11.4 0.2 0.4 10.1 0.0 1.7 2 0 0 2 2 2 0 Rad50 zinc hook motif ETF PF01012.16 gi|159041059|ref|YP_001540311.1| - 4.5e-42 143.5 0.1 8.3e-42 142.6 0.0 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|159041059|ref|YP_001540311.1| - 5.8e-32 109.1 1.8 6.1e-32 109.0 0.4 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.17 gi|159041059|ref|YP_001540311.1| - 0.02 14.6 1.5 1.5 8.5 0.1 2.8 2 1 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain ETF PF01012.16 gi|159041060|ref|YP_001540312.1| - 3.8e-28 98.2 0.0 5.2e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_11 PF13247.1 gi|159041061|ref|YP_001540313.1| - 1.9e-08 34.0 5.7 2.5e-08 33.7 3.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159041061|ref|YP_001540313.1| - 1.4e-07 31.7 36.7 0.00022 21.5 10.3 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041061|ref|YP_001540313.1| - 7.3e-07 28.7 12.1 0.0012 18.5 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159041061|ref|YP_001540313.1| - 1.4e-06 27.9 23.3 8.4e-05 22.2 10.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159041061|ref|YP_001540313.1| - 2.5e-06 26.8 15.0 5e-06 25.8 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041061|ref|YP_001540313.1| - 4.2e-05 23.2 17.5 0.0025 17.6 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159041061|ref|YP_001540313.1| - 0.00015 21.5 11.7 0.00031 20.5 8.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041061|ref|YP_001540313.1| - 0.00015 21.9 14.0 0.0015 18.7 10.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041061|ref|YP_001540313.1| - 0.0017 19.0 7.3 0.0094 16.6 0.7 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|159041061|ref|YP_001540313.1| - 0.0056 16.9 1.2 0.0056 16.9 0.8 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|159041061|ref|YP_001540313.1| - 0.0097 16.4 5.1 0.0097 16.4 3.6 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|159041061|ref|YP_001540313.1| - 0.037 14.0 3.0 0.037 14.0 2.1 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041061|ref|YP_001540313.1| - 0.087 13.1 2.9 0.087 13.1 2.0 2.2 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159041061|ref|YP_001540313.1| - 0.32 11.3 10.9 0.4 11.0 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain RLI PF04068.10 gi|159041061|ref|YP_001540313.1| - 0.93 9.1 7.4 2.4 7.8 5.2 1.7 1 1 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI DAO PF01266.19 gi|159041062|ref|YP_001540314.1| - 1.1e-13 50.8 6.1 3.2e-07 29.5 0.0 2.7 2 1 2 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|159041062|ref|YP_001540314.1| - 4.3e-10 39.0 1.0 4e-07 29.2 0.4 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|159041062|ref|YP_001540314.1| - 8.9e-10 37.5 0.2 2.8e-09 35.9 0.1 1.7 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|159041062|ref|YP_001540314.1| - 2.3e-09 36.6 1.4 1.7e-08 33.8 0.8 2.1 1 1 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|159041062|ref|YP_001540314.1| - 6.5e-09 35.9 0.1 1.1e-08 35.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|159041062|ref|YP_001540314.1| - 3e-08 33.5 0.3 8.2e-08 32.1 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|159041062|ref|YP_001540314.1| - 8.6e-07 28.3 0.2 1.3e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|159041062|ref|YP_001540314.1| - 3.4e-06 26.3 1.0 6.1e-06 25.5 0.7 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|159041062|ref|YP_001540314.1| - 5.5e-06 26.5 0.0 9.9e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|159041062|ref|YP_001540314.1| - 6e-06 26.1 0.2 2.2e-05 24.2 0.1 2.0 1 1 0 1 1 1 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|159041062|ref|YP_001540314.1| - 5e-05 22.3 0.1 0.00013 21.0 0.1 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.17 gi|159041062|ref|YP_001540314.1| - 0.00014 20.8 0.7 0.0054 15.6 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|159041062|ref|YP_001540314.1| - 0.00038 19.6 3.5 0.0011 18.1 0.0 2.8 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.9 gi|159041062|ref|YP_001540314.1| - 0.00066 18.4 0.3 0.15 10.6 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase GDI PF00996.13 gi|159041062|ref|YP_001540314.1| - 0.0018 16.6 0.0 0.22 9.8 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor Pyr_redox PF00070.22 gi|159041062|ref|YP_001540314.1| - 0.0038 17.5 1.6 0.054 13.8 0.8 2.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|159041062|ref|YP_001540314.1| - 0.024 13.8 0.0 2.1 7.4 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase nlz1 PF12402.3 gi|159041062|ref|YP_001540314.1| - 0.11 12.8 0.1 0.28 11.5 0.1 1.7 1 0 0 1 1 1 0 NocA-like zinc-finger protein 1 TENA_THI-4 PF03070.11 gi|159041063|ref|YP_001540315.1| - 6.2e-40 137.1 4.3 7e-40 137.0 3.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF4373 PF14297.1 gi|159041063|ref|YP_001540315.1| - 0.031 14.5 0.3 0.31 11.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4373) TM_helix PF05552.7 gi|159041064|ref|YP_001540316.1| - 0.015 14.9 1.6 0.015 14.9 1.1 4.7 5 1 0 5 5 5 0 Conserved TM helix FAM176 PF14851.1 gi|159041064|ref|YP_001540316.1| - 0.34 10.5 0.9 0.72 9.5 0.6 1.5 1 0 0 1 1 1 0 FAM176 family HTH_11 PF08279.7 gi|159041065|ref|YP_001540317.1| - 2.8e-05 23.6 0.1 0.00014 21.3 0.0 2.3 2 1 0 2 2 2 1 HTH domain HTH_3 PF01381.17 gi|159041065|ref|YP_001540317.1| - 3.2e-05 23.6 0.1 9.6e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|159041065|ref|YP_001540317.1| - 0.00048 19.3 0.6 0.23 10.7 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_38 PF13936.1 gi|159041065|ref|YP_001540317.1| - 0.00057 19.3 0.0 0.0012 18.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|159041065|ref|YP_001540317.1| - 0.00066 19.2 0.0 0.0017 17.9 0.0 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|159041065|ref|YP_001540317.1| - 0.00092 19.0 0.1 0.0041 16.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_20 PF12840.2 gi|159041065|ref|YP_001540317.1| - 0.0012 18.6 0.0 0.0035 17.1 0.0 1.9 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|159041065|ref|YP_001540317.1| - 0.0026 17.8 0.1 0.0066 16.5 0.1 1.7 2 1 0 2 2 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|159041065|ref|YP_001540317.1| - 0.0028 17.0 0.4 0.011 15.2 0.0 2.1 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|159041065|ref|YP_001540317.1| - 0.0083 15.4 0.0 0.04 13.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.1 gi|159041065|ref|YP_001540317.1| - 0.0084 16.3 0.1 0.017 15.3 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|159041065|ref|YP_001540317.1| - 0.012 14.9 0.8 0.11 11.8 0.0 2.5 3 0 0 3 3 3 0 CodY helix-turn-helix domain GerE PF00196.14 gi|159041065|ref|YP_001540317.1| - 0.024 13.9 0.1 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Put_DNA-bind_N PF06971.8 gi|159041065|ref|YP_001540317.1| - 0.034 13.9 0.3 0.73 9.6 0.0 2.9 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus HTH_19 PF12844.2 gi|159041065|ref|YP_001540317.1| - 0.04 13.9 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|159041065|ref|YP_001540317.1| - 0.044 13.7 0.0 0.098 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|159041065|ref|YP_001540317.1| - 0.045 13.3 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|159041065|ref|YP_001540317.1| - 0.065 12.7 0.1 0.32 10.5 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_31 PF13560.1 gi|159041065|ref|YP_001540317.1| - 0.072 13.2 1.1 0.089 13.0 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|159041065|ref|YP_001540317.1| - 0.074 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_5 PF01022.15 gi|159041065|ref|YP_001540317.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family KaiC PF06745.8 gi|159041066|ref|YP_001540318.1| - 1.2e-79 266.6 0.0 1.7e-79 266.1 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|159041066|ref|YP_001540318.1| - 2.9e-08 33.3 0.1 1.9e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|159041066|ref|YP_001540318.1| - 2.2e-05 23.0 0.0 2.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|159041066|ref|YP_001540318.1| - 0.00037 19.5 0.1 0.00083 18.4 0.1 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|159041066|ref|YP_001540318.1| - 0.0047 16.8 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|159041066|ref|YP_001540318.1| - 0.0099 15.6 0.5 0.026 14.2 0.3 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|159041066|ref|YP_001540318.1| - 0.031 14.2 0.1 0.055 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|159041066|ref|YP_001540318.1| - 0.063 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|159041066|ref|YP_001540318.1| - 0.074 13.1 0.3 0.21 11.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|159041066|ref|YP_001540318.1| - 0.098 12.9 1.2 0.25 11.6 0.2 2.1 2 1 0 2 2 2 0 AAA domain DrsE_2 PF13686.1 gi|159041067|ref|YP_001540319.1| - 6.8e-17 61.6 0.2 3.6e-16 59.2 0.1 1.8 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|159041067|ref|YP_001540319.1| - 3.5e-07 30.3 0.0 8.4e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.12 gi|159041068|ref|YP_001540320.1| - 6.5e-18 64.1 0.0 7.4e-18 63.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.9 gi|159041069|ref|YP_001540321.1| - 1.4e-12 47.8 0.0 4.1e-12 46.3 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159041069|ref|YP_001540321.1| - 6.9e-06 26.3 0.0 0.081 13.3 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|159041069|ref|YP_001540321.1| - 1.3e-05 25.0 0.0 4.2e-05 23.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|159041069|ref|YP_001540321.1| - 0.00024 20.9 0.0 0.079 12.7 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|159041069|ref|YP_001540321.1| - 0.0016 17.0 0.0 0.0063 15.0 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.19 gi|159041069|ref|YP_001540321.1| - 0.0025 16.7 0.0 0.017 14.0 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|159041069|ref|YP_001540321.1| - 0.004 16.0 0.0 0.006 15.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|159041069|ref|YP_001540321.1| - 0.011 14.7 0.0 0.026 13.5 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.7 gi|159041069|ref|YP_001540321.1| - 0.013 14.4 0.0 0.042 12.7 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein TrkA_N PF02254.13 gi|159041069|ref|YP_001540321.1| - 0.018 15.0 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|159041069|ref|YP_001540321.1| - 0.04 14.1 0.0 0.081 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DUF1641 PF07849.6 gi|159041070|ref|YP_001540322.1| - 0.0076 15.8 1.4 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) AsiA PF09010.5 gi|159041070|ref|YP_001540322.1| - 0.28 11.0 4.2 1 9.2 0.1 3.2 2 1 1 3 3 3 0 Anti-Sigma Factor A Pribosyltran_N PF13793.1 gi|159041071|ref|YP_001540323.1| - 7.5e-26 90.1 0.0 1.3e-21 76.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|159041071|ref|YP_001540323.1| - 9.6e-14 51.1 0.4 4.3e-13 49.0 0.1 2.1 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|159041071|ref|YP_001540323.1| - 3.6e-09 36.6 1.0 5.6e-09 36.0 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|159041071|ref|YP_001540323.1| - 0.00051 19.3 0.0 0.00081 18.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|159041071|ref|YP_001540323.1| - 0.017 14.4 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Rotavirus_VP1 PF12289.3 gi|159041071|ref|YP_001540323.1| - 0.041 13.5 0.0 0.096 12.3 0.0 1.6 1 0 0 1 1 1 0 Rotavirus VP1 structural protein Tsp45I PF06300.7 gi|159041071|ref|YP_001540323.1| - 0.056 12.8 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme ACT PF01842.20 gi|159041072|ref|YP_001540324.1| - 2.9e-09 36.2 0.0 1.1e-08 34.3 0.0 1.9 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|159041072|ref|YP_001540324.1| - 0.0037 16.9 0.0 0.006 16.2 0.0 1.3 1 0 0 1 1 1 1 ACT domain CBP PF12192.3 gi|159041072|ref|YP_001540324.1| - 0.38 10.7 1.5 0.63 10.0 1.1 1.4 1 0 0 1 1 1 0 Fungal calcium binding protein DUF2324 PF10086.4 gi|159041073|ref|YP_001540325.1| - 3.2e-05 23.2 12.5 0.00011 21.5 8.6 1.8 1 1 0 1 1 1 1 Putative membrane peptidase family (DUF2324) YbjQ_1 PF01906.12 gi|159041074|ref|YP_001540326.1| - 1e-34 119.1 0.6 1.2e-34 118.9 0.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|159041074|ref|YP_001540326.1| - 0.013 15.6 0.0 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 Selenium binding protein GNAT_acetyltr_2 PF13718.1 gi|159041074|ref|YP_001540326.1| - 0.067 12.5 0.0 0.074 12.3 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF2204 PF09970.4 gi|159041075|ref|YP_001540327.1| - 3.4e-61 205.8 0.2 3.8e-61 205.7 0.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) tRNA-Thr_ED PF08915.6 gi|159041076|ref|YP_001540328.1| - 2.6e-50 169.9 0.0 4.1e-50 169.3 0.0 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|159041076|ref|YP_001540328.1| - 3.8e-22 78.0 0.5 7.5e-22 77.0 0.1 1.7 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|159041076|ref|YP_001540328.1| - 8e-17 61.3 0.3 1.5e-16 60.5 0.2 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Aldo_ket_red PF00248.16 gi|159041077|ref|YP_001540329.1| - 1e-34 119.7 0.0 1.1e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family VKOR PF07884.9 gi|159041079|ref|YP_001540331.1| - 0.0093 15.8 19.4 0.54 10.1 13.4 2.9 1 1 0 1 1 1 1 Vitamin K epoxide reductase family DUF3159 PF11361.3 gi|159041079|ref|YP_001540331.1| - 0.019 14.4 8.3 0.026 13.9 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) DsbB PF02600.11 gi|159041079|ref|YP_001540331.1| - 1.6 8.4 13.0 6.4 6.5 9.0 2.0 1 1 0 1 1 1 0 Disulfide bond formation protein DsbB DUF3329 PF11808.3 gi|159041079|ref|YP_001540331.1| - 3.2 7.8 6.0 18 5.4 3.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3329) DUF1056 PF06341.6 gi|159041079|ref|YP_001540331.1| - 7.3 6.7 10.7 1.4 9.0 2.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) DAO PF01266.19 gi|159041080|ref|YP_001540332.1| - 1.4e-20 73.5 0.0 4.5e-13 48.8 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|159041080|ref|YP_001540332.1| - 3.8e-05 23.6 0.2 0.00016 21.6 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159041080|ref|YP_001540332.1| - 0.00026 21.3 0.2 0.001 19.4 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|159041080|ref|YP_001540332.1| - 0.0012 18.7 0.5 0.0025 17.7 0.1 1.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|159041080|ref|YP_001540332.1| - 0.0013 17.6 0.1 0.0021 17.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|159041080|ref|YP_001540332.1| - 0.017 14.1 0.2 0.059 12.4 0.1 1.8 2 0 0 2 2 2 0 FAD binding domain GIDA PF01134.17 gi|159041080|ref|YP_001540332.1| - 0.053 12.3 0.0 0.54 9.0 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|159041080|ref|YP_001540332.1| - 0.064 13.5 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding HI0933_like PF03486.9 gi|159041080|ref|YP_001540332.1| - 0.074 11.5 0.2 0.15 10.5 0.0 1.5 2 0 0 2 2 2 0 HI0933-like protein B12-binding PF02310.14 gi|159041080|ref|YP_001540332.1| - 0.14 12.0 0.1 0.37 10.6 0.1 1.7 1 0 0 1 1 1 0 B12 binding domain RIO1 PF01163.17 gi|159041081|ref|YP_001540333.1| - 4.1e-55 186.0 0.0 5.7e-55 185.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|159041081|ref|YP_001540333.1| - 0.00015 21.6 0.1 0.02 14.6 0.1 2.2 2 0 0 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|159041081|ref|YP_001540333.1| - 0.0029 16.7 0.1 0.012 14.7 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|159041081|ref|YP_001540333.1| - 0.08 12.0 0.0 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 Protein kinase domain PEP-utilizers_C PF02896.13 gi|159041082|ref|YP_001540334.1| - 3e-81 272.5 0.1 4.8e-81 271.8 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|159041082|ref|YP_001540334.1| - 3.1e-53 180.9 0.0 1.1e-52 179.1 0.0 1.8 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|159041082|ref|YP_001540334.1| - 3e-22 77.9 0.6 1e-21 76.2 0.4 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Rho_Binding PF08912.6 gi|159041082|ref|YP_001540334.1| - 0.22 11.8 1.4 2 8.7 0.1 2.6 2 0 0 2 2 2 0 Rho Binding PRD PF00874.15 gi|159041082|ref|YP_001540334.1| - 0.32 11.1 3.2 25 5.0 0.0 3.7 4 0 0 4 4 4 0 PRD domain polyprenyl_synt PF00348.12 gi|159041083|ref|YP_001540335.1| - 1.1e-39 135.9 0.5 1.3e-39 135.5 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase CN_hydrolase PF00795.17 gi|159041084|ref|YP_001540336.1| - 3.4e-28 98.2 0.0 4.6e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ribosomal_S13 PF00416.17 gi|159041085|ref|YP_001540337.1| - 2.2e-30 105.2 0.1 2.7e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_6 PF14579.1 gi|159041085|ref|YP_001540337.1| - 0.096 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif Peptidase_S24 PF00717.18 gi|159041086|ref|YP_001540338.1| - 0.00033 20.2 0.0 0.00054 19.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like PEMT PF04191.8 gi|159041086|ref|YP_001540338.1| - 0.86 9.7 3.6 0.63 10.1 0.4 2.1 2 0 0 2 2 2 0 Phospholipid methyltransferase Phageshock_PspG PF09583.5 gi|159041086|ref|YP_001540338.1| - 8.4 6.5 11.0 0.5 10.4 2.3 2.3 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) MFS_1 PF07690.11 gi|159041087|ref|YP_001540339.1| - 1.6e-33 115.8 47.8 2.3e-19 69.3 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|159041087|ref|YP_001540339.1| - 4.2e-05 23.2 6.9 0.0047 16.6 0.0 4.2 3 2 1 4 4 4 2 MFS_1 like family ABC_tran PF00005.22 gi|159041088|ref|YP_001540340.1| - 9.4e-32 110.1 0.0 1.4e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041088|ref|YP_001540340.1| - 2.9e-08 34.0 0.4 0.00014 21.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|159041088|ref|YP_001540340.1| - 0.00056 19.7 0.0 0.005 16.7 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|159041088|ref|YP_001540340.1| - 0.00071 19.0 0.3 0.0013 18.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|159041088|ref|YP_001540340.1| - 0.00092 18.5 0.6 0.13 11.4 0.2 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|159041088|ref|YP_001540340.1| - 0.001 19.4 0.5 0.0017 18.6 0.3 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|159041088|ref|YP_001540340.1| - 0.0013 17.9 0.1 0.002 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|159041088|ref|YP_001540340.1| - 0.0024 16.9 0.1 0.7 8.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain TOBE_2 PF08402.5 gi|159041088|ref|YP_001540340.1| - 0.003 17.5 0.0 0.0074 16.2 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_30 PF13604.1 gi|159041088|ref|YP_001540340.1| - 0.0041 16.7 0.1 0.012 15.1 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|159041088|ref|YP_001540340.1| - 0.0047 16.6 0.1 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|159041088|ref|YP_001540340.1| - 0.0057 16.8 0.0 0.025 14.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|159041088|ref|YP_001540340.1| - 0.0069 15.8 0.1 0.013 14.9 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|159041088|ref|YP_001540340.1| - 0.011 16.5 0.0 0.018 15.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|159041088|ref|YP_001540340.1| - 0.012 14.7 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin T2SE PF00437.15 gi|159041088|ref|YP_001540340.1| - 0.012 14.5 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|159041088|ref|YP_001540340.1| - 0.016 14.6 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|159041088|ref|YP_001540340.1| - 0.02 14.7 0.0 0.088 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|159041088|ref|YP_001540340.1| - 0.023 14.8 0.2 0.15 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|159041088|ref|YP_001540340.1| - 0.028 14.3 0.0 0.069 13.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain Arch_ATPase PF01637.13 gi|159041088|ref|YP_001540340.1| - 0.033 13.8 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|159041088|ref|YP_001540340.1| - 0.033 13.9 0.1 0.13 11.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.10 gi|159041088|ref|YP_001540340.1| - 0.043 12.4 0.4 0.22 10.1 0.1 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_18 PF13238.1 gi|159041088|ref|YP_001540340.1| - 0.046 14.0 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF87 PF01935.12 gi|159041088|ref|YP_001540340.1| - 0.05 13.4 0.2 0.094 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 cobW PF02492.14 gi|159041088|ref|YP_001540340.1| - 0.051 13.0 0.1 0.1 12.0 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TOBE PF03459.12 gi|159041088|ref|YP_001540340.1| - 0.052 13.6 0.0 0.26 11.4 0.0 2.2 2 0 0 2 2 2 0 TOBE domain AAA_16 PF13191.1 gi|159041088|ref|YP_001540340.1| - 0.065 13.2 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.1 gi|159041088|ref|YP_001540340.1| - 0.12 10.8 0.1 0.17 10.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|159041088|ref|YP_001540340.1| - 0.13 10.7 0.1 0.2 10.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein MobB PF03205.9 gi|159041088|ref|YP_001540340.1| - 0.14 11.8 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|159041089|ref|YP_001540341.1| - 1.2e-16 60.7 20.5 1.2e-16 60.7 14.2 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|159041090|ref|YP_001540342.1| - 6.6e-34 117.5 0.0 9.6e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|159041090|ref|YP_001540342.1| - 0.014 15.1 0.1 0.041 13.6 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein vATP-synt_AC39 PF01992.11 gi|159041091|ref|YP_001540343.1| - 1.3e-15 57.4 0.0 1.7e-15 56.9 0.0 1.3 1 1 0 1 1 1 1 ATP synthase (C/AC39) subunit RFC1 PF08519.7 gi|159041091|ref|YP_001540343.1| - 0.11 12.2 0.0 0.74 9.5 0.0 2.1 2 0 0 2 2 2 0 Replication factor RFC1 C terminal domain ECR1_N PF14382.1 gi|159041092|ref|YP_001540344.1| - 1.2e-09 37.2 0.0 3.1e-09 35.9 0.0 1.8 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region UPF0547 PF10571.4 gi|159041092|ref|YP_001540344.1| - 3.1e-05 23.5 3.1 5.3e-05 22.8 2.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|159041092|ref|YP_001540344.1| - 0.0041 16.7 0.4 0.0073 15.9 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|159041092|ref|YP_001540344.1| - 0.014 15.2 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 IBR domain DZR PF12773.2 gi|159041092|ref|YP_001540344.1| - 0.023 14.5 0.3 0.037 13.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|159041092|ref|YP_001540344.1| - 0.036 13.6 5.1 3 7.4 3.5 2.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041092|ref|YP_001540344.1| - 0.047 13.3 4.9 3.5 7.3 3.4 2.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|159041092|ref|YP_001540344.1| - 0.057 13.7 1.8 0.64 10.4 0.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.1 gi|159041092|ref|YP_001540344.1| - 0.1 11.8 3.6 0.87 8.8 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159041092|ref|YP_001540344.1| - 0.13 11.7 1.0 0.31 10.5 0.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|159041092|ref|YP_001540344.1| - 0.14 11.9 1.4 0.24 11.1 0.9 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|159041092|ref|YP_001540344.1| - 0.18 11.5 0.5 0.31 10.8 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2 PF00096.21 gi|159041092|ref|YP_001540344.1| - 0.2 12.1 1.1 0.61 10.5 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.7 gi|159041092|ref|YP_001540344.1| - 0.25 10.6 1.1 0.48 9.7 0.8 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|159041092|ref|YP_001540344.1| - 0.43 10.1 3.1 1.6 8.3 2.1 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger DUF1610 PF07754.6 gi|159041092|ref|YP_001540344.1| - 1 9.5 5.5 6.4 6.9 3.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|159041092|ref|YP_001540344.1| - 1.7 8.6 4.6 12 5.9 3.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain GAGA PF09237.6 gi|159041092|ref|YP_001540344.1| - 4.4 6.9 5.6 17 5.0 0.1 2.5 1 1 1 2 2 2 0 GAGA factor AAA_5 PF07728.9 gi|159041094|ref|YP_001540346.1| - 8.4e-22 77.3 0.0 2e-21 76.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|159041094|ref|YP_001540346.1| - 4.3e-19 68.4 0.0 7.2e-19 67.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|159041094|ref|YP_001540346.1| - 1.7e-10 40.6 0.0 9.8e-10 38.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|159041094|ref|YP_001540346.1| - 1.1e-08 35.3 0.0 2.5e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|159041094|ref|YP_001540346.1| - 1.9e-08 34.5 0.0 6.1e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|159041094|ref|YP_001540346.1| - 1.5e-07 30.8 0.5 1.2e-05 24.6 0.1 2.6 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|159041094|ref|YP_001540346.1| - 2.1e-05 23.7 0.9 0.0044 16.1 0.6 2.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|159041094|ref|YP_001540346.1| - 2.3e-05 24.2 0.0 4.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041094|ref|YP_001540346.1| - 7.8e-05 22.7 0.0 0.0008 19.4 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA_PrkA PF08298.6 gi|159041094|ref|YP_001540346.1| - 0.00019 20.2 0.1 0.11 11.1 0.0 2.3 1 1 1 2 2 2 2 PrkA AAA domain AAA_17 PF13207.1 gi|159041094|ref|YP_001540346.1| - 0.00028 21.6 0.1 0.00088 20.0 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|159041094|ref|YP_001540346.1| - 0.00032 21.0 0.0 0.00075 19.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain MCM PF00493.18 gi|159041094|ref|YP_001540346.1| - 0.00046 19.0 0.0 0.00099 17.9 0.0 1.5 2 0 0 2 2 2 1 MCM2/3/5 family NACHT PF05729.7 gi|159041094|ref|YP_001540346.1| - 0.00069 19.3 0.0 0.0017 18.0 0.0 1.8 2 0 0 2 2 1 1 NACHT domain MobB PF03205.9 gi|159041094|ref|YP_001540346.1| - 0.00087 19.0 0.0 0.0021 17.7 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.20 gi|159041094|ref|YP_001540346.1| - 0.0013 18.3 0.0 0.0014 18.1 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.24 gi|159041094|ref|YP_001540346.1| - 0.0013 18.2 0.1 0.76 9.2 0.0 2.5 1 1 1 2 2 2 1 DEAD/DEAH box helicase NTPase_1 PF03266.10 gi|159041094|ref|YP_001540346.1| - 0.0014 18.3 0.0 0.026 14.2 0.0 2.4 1 1 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|159041094|ref|YP_001540346.1| - 0.0038 16.8 0.0 0.007 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|159041094|ref|YP_001540346.1| - 0.0099 15.3 0.1 0.17 11.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|159041094|ref|YP_001540346.1| - 0.0099 16.1 0.1 0.031 14.5 0.0 1.8 2 0 0 2 2 1 1 ABC transporter Arch_ATPase PF01637.13 gi|159041094|ref|YP_001540346.1| - 0.013 15.2 0.0 0.75 9.4 0.0 2.5 2 0 0 2 2 2 0 Archaeal ATPase PduV-EutP PF10662.4 gi|159041094|ref|YP_001540346.1| - 0.018 14.5 0.1 0.066 12.7 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Sigma54_activ_2 PF14532.1 gi|159041094|ref|YP_001540346.1| - 0.021 14.8 0.0 0.13 12.2 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|159041094|ref|YP_001540346.1| - 0.024 14.2 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|159041094|ref|YP_001540346.1| - 0.029 13.7 0.0 0.047 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|159041094|ref|YP_001540346.1| - 0.042 13.0 0.0 0.077 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|159041094|ref|YP_001540346.1| - 0.048 13.4 0.1 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|159041094|ref|YP_001540346.1| - 0.071 11.9 0.1 0.15 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain UPF0079 PF02367.12 gi|159041094|ref|YP_001540346.1| - 0.078 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 TIP49 PF06068.8 gi|159041094|ref|YP_001540346.1| - 0.08 11.6 0.1 0.28 9.8 0.0 1.8 2 0 0 2 2 2 0 TIP49 C-terminus AAA_2 PF07724.9 gi|159041094|ref|YP_001540346.1| - 0.081 12.8 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|159041094|ref|YP_001540346.1| - 0.088 12.9 0.0 0.28 11.3 0.0 1.8 2 0 0 2 2 1 0 RNA helicase KaiC PF06745.8 gi|159041094|ref|YP_001540346.1| - 0.09 11.8 0.0 0.18 10.9 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_33 PF13671.1 gi|159041094|ref|YP_001540346.1| - 0.095 12.5 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|159041094|ref|YP_001540346.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1997 PF09366.5 gi|159041094|ref|YP_001540346.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1997) AAA_28 PF13521.1 gi|159041094|ref|YP_001540346.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|159041094|ref|YP_001540346.1| - 0.15 11.6 0.0 0.5 9.8 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Aminotran_1_2 PF00155.16 gi|159041095|ref|YP_001540347.1| - 2.4e-35 122.1 0.0 3.1e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II GPP34 PF05719.6 gi|159041095|ref|YP_001540347.1| - 0.099 12.7 0.1 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) FliP PF00813.15 gi|159041095|ref|YP_001540347.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 FliP family CobS PF02654.10 gi|159041096|ref|YP_001540348.1| - 3.4e-31 108.6 7.2 4.2e-31 108.3 5.0 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase 60KD_IMP PF02096.15 gi|159041096|ref|YP_001540348.1| - 0.34 10.5 1.9 15 5.1 0.0 2.2 2 0 0 2 2 2 0 60Kd inner membrane protein RseC_MucC PF04246.7 gi|159041096|ref|YP_001540348.1| - 1.6 8.3 9.1 0.31 10.5 0.4 2.4 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC UPF0086 PF01868.11 gi|159041097|ref|YP_001540349.1| - 2.8e-07 30.0 0.0 3.4e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S19 PF00203.16 gi|159041098|ref|YP_001540350.1| - 1.2e-24 85.6 0.0 2.2e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_S17 PF00366.15 gi|159041099|ref|YP_001540351.1| - 5.1e-17 61.6 0.9 7.4e-17 61.1 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.4 gi|159041099|ref|YP_001540351.1| - 0.094 12.2 0.8 0.15 11.5 0.5 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain FolB PF02152.13 gi|159041100|ref|YP_001540352.1| - 6e-32 110.1 0.1 9.4e-32 109.5 0.1 1.3 1 0 0 1 1 1 1 Dihydroneopterin aldolase HPPK PF01288.15 gi|159041100|ref|YP_001540352.1| - 5.8e-31 106.8 0.0 8.3e-31 106.3 0.0 1.2 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) adh_short_C2 PF13561.1 gi|159041101|ref|YP_001540353.1| - 1.1e-28 100.6 0.0 1.3e-28 100.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|159041101|ref|YP_001540353.1| - 5e-23 81.8 0.0 6.9e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|159041101|ref|YP_001540353.1| - 6.4e-10 38.9 0.0 8.2e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|159041101|ref|YP_001540353.1| - 4.8e-07 29.4 0.1 7.3e-06 25.5 0.0 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|159041101|ref|YP_001540353.1| - 0.0076 14.9 0.0 0.01 14.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Wax2_C PF12076.3 gi|159041101|ref|YP_001540353.1| - 0.025 14.3 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 WAX2 C-terminal domain NAD_binding_10 PF13460.1 gi|159041101|ref|YP_001540353.1| - 0.051 13.5 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 NADH(P)-binding Peptidase_M48 PF01435.13 gi|159041102|ref|YP_001540354.1| - 2.8e-30 105.5 0.0 5.7e-30 104.5 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|159041102|ref|YP_001540354.1| - 0.0003 19.8 0.5 0.00051 19.1 0.3 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 SUR7 PF06687.7 gi|159041102|ref|YP_001540354.1| - 0.33 10.4 0.1 0.33 10.4 0.0 2.2 2 0 0 2 2 2 0 SUR7/PalI family DUF4131 PF13567.1 gi|159041102|ref|YP_001540354.1| - 0.69 9.2 7.4 6.1 6.2 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF4013 PF13197.1 gi|159041102|ref|YP_001540354.1| - 5.9 6.1 21.3 0.36 10.1 1.8 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF4013) UbiA PF01040.13 gi|159041103|ref|YP_001540355.1| - 6.4e-27 94.4 28.8 7.7e-27 94.1 20.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family CoA_binding_3 PF13727.1 gi|159041103|ref|YP_001540355.1| - 0.21 11.3 5.1 0.11 12.2 1.6 2.0 2 0 0 2 2 2 0 CoA-binding domain GTP_cyclohydroI PF01227.17 gi|159041104|ref|YP_001540356.1| - 1e-59 200.8 0.1 1.2e-59 200.6 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.1 gi|159041104|ref|YP_001540356.1| - 0.051 13.5 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 QueF-like protein Phe_tRNA-synt_N PF02912.13 gi|159041105|ref|YP_001540357.1| - 0.015 14.9 1.5 0.018 14.7 1.0 1.2 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain FlgD_ig PF13860.1 gi|159041105|ref|YP_001540357.1| - 0.023 14.4 0.0 0.024 14.3 0.0 1.1 1 0 0 1 1 1 0 FlgD Ig-like domain Apolipoprotein PF01442.13 gi|159041105|ref|YP_001540357.1| - 0.039 13.4 1.3 0.039 13.4 0.9 1.0 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain SpoOE-like PF09388.5 gi|159041105|ref|YP_001540357.1| - 0.082 12.4 1.8 0.14 11.7 1.2 1.4 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein Orn_Arg_deC_N PF02784.11 gi|159041106|ref|YP_001540358.1| - 3.6e-39 134.4 0.0 5.4e-39 133.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|159041106|ref|YP_001540358.1| - 2.7e-22 78.6 0.0 4.3e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Cupin_1 PF00190.17 gi|159041106|ref|YP_001540358.1| - 0.0099 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Cupin Methyltransf_23 PF13489.1 gi|159041107|ref|YP_001540359.1| - 2.3e-14 53.4 0.0 3.2e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|159041107|ref|YP_001540359.1| - 6.2e-14 52.2 0.0 1.3e-13 51.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159041107|ref|YP_001540359.1| - 4.4e-09 36.7 0.0 1.3e-08 35.2 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041107|ref|YP_001540359.1| - 3.5e-08 33.1 0.0 4.8e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041107|ref|YP_001540359.1| - 1.6e-07 31.8 0.0 3.6e-07 30.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159041107|ref|YP_001540359.1| - 8.6e-05 22.5 0.0 0.00017 21.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041107|ref|YP_001540359.1| - 0.002 18.4 0.0 0.0047 17.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159041107|ref|YP_001540359.1| - 0.0021 17.1 0.0 0.0027 16.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|159041107|ref|YP_001540359.1| - 0.028 13.9 0.0 0.04 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|159041107|ref|YP_001540359.1| - 0.039 13.1 0.0 0.13 11.3 0.0 1.8 1 1 1 2 2 2 0 Tellurite resistance protein TehB dUTPase PF00692.14 gi|159041108|ref|YP_001540360.1| - 6.9e-15 54.6 0.0 4.6e-14 51.9 0.0 1.9 1 1 1 2 2 2 1 dUTPase DCD PF06559.6 gi|159041108|ref|YP_001540360.1| - 0.06 11.7 0.0 12 4.1 0.0 2.8 2 1 1 3 3 3 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Pectate_lyase_3 PF12708.2 gi|159041109|ref|YP_001540361.1| - 2.6e-05 24.4 1.5 6.2e-05 23.2 0.8 1.9 1 1 0 1 1 1 1 Pectate lyase superfamily protein HAD_2 PF13419.1 gi|159041110|ref|YP_001540362.1| - 1.2e-17 64.7 0.0 1.5e-17 64.3 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|159041110|ref|YP_001540362.1| - 0.00023 20.8 0.0 0.00049 19.7 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|159041110|ref|YP_001540362.1| - 0.00067 20.1 0.0 0.00089 19.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SIS PF01380.17 gi|159041111|ref|YP_001540363.1| - 1.7e-46 157.0 1.8 6.9e-30 103.3 0.6 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|159041111|ref|YP_001540363.1| - 5.3e-25 87.9 0.0 9.8e-25 87.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|159041111|ref|YP_001540363.1| - 3.4e-21 75.2 0.0 5.7e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|159041111|ref|YP_001540363.1| - 8e-20 70.8 0.5 7.6e-16 57.7 0.0 2.3 1 1 0 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|159041111|ref|YP_001540363.1| - 0.00015 21.5 0.1 0.00069 19.3 0.1 2.1 1 1 0 1 1 1 1 SIS domain GATase_4 PF13230.1 gi|159041111|ref|YP_001540363.1| - 0.00043 19.0 0.0 0.00073 18.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.19 gi|159041112|ref|YP_001540364.1| - 4.1e-17 60.8 13.4 7.6e-06 25.1 0.0 5.4 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|159041112|ref|YP_001540364.1| - 4.7e-07 29.2 13.3 0.096 12.2 0.8 5.3 3 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|159041112|ref|YP_001540364.1| - 0.0006 19.9 0.0 0.00095 19.2 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Chorismate_synt PF01264.16 gi|159041113|ref|YP_001540365.1| - 7.2e-128 425.9 0.0 8.1e-128 425.7 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase MoCF_biosynth PF00994.19 gi|159041113|ref|YP_001540365.1| - 0.09 12.1 0.1 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Probable molybdopterin binding domain PaREP1 PF05942.6 gi|159041114|ref|YP_001540366.1| - 7.3e-33 112.8 6.9 1.1e-32 112.2 4.8 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|159041114|ref|YP_001540366.1| - 2.6e-05 23.8 3.4 5.4e-05 22.7 0.1 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF357) DUF4398 PF14346.1 gi|159041114|ref|YP_001540366.1| - 0.0072 16.3 2.5 0.0072 16.3 1.8 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) Plasmid_stabil PF05016.9 gi|159041114|ref|YP_001540366.1| - 0.012 16.0 0.5 0.023 15.0 0.3 1.5 1 1 0 1 1 1 0 Plasmid stabilisation system protein HemY_N PF07219.8 gi|159041114|ref|YP_001540366.1| - 0.018 14.5 0.3 0.029 13.9 0.2 1.4 1 0 0 1 1 1 0 HemY protein N-terminus YfdX PF10938.3 gi|159041114|ref|YP_001540366.1| - 0.042 13.5 0.4 0.1 12.2 0.2 1.6 1 1 0 1 1 1 0 YfdX protein UPF0278 PF08745.6 gi|159041114|ref|YP_001540366.1| - 0.07 12.3 0.2 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 UPF0278 family 14-3-3 PF00244.15 gi|159041114|ref|YP_001540366.1| - 0.15 11.1 2.0 0.083 11.9 0.2 1.4 2 0 0 2 2 2 0 14-3-3 protein HEPN PF05168.9 gi|159041114|ref|YP_001540366.1| - 0.27 11.1 7.0 1.8 8.4 4.9 2.1 1 1 0 1 1 1 0 HEPN domain ODV-E18 PF10717.4 gi|159041115|ref|YP_001540367.1| - 8.9 5.8 8.3 1.3 8.5 1.7 2.2 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Transglut_core PF01841.14 gi|159041116|ref|YP_001540368.1| - 0.0026 17.9 0.1 0.0062 16.7 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily AAA_3 PF07726.6 gi|159041117|ref|YP_001540369.1| - 4.1e-63 210.8 0.0 8.7e-63 209.7 0.0 1.5 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|159041117|ref|YP_001540369.1| - 1e-13 51.1 0.0 2.2e-13 50.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|159041117|ref|YP_001540369.1| - 1.1e-08 34.2 0.0 3.4e-07 29.3 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|159041117|ref|YP_001540369.1| - 1.9e-08 34.5 0.1 6.5e-07 29.6 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|159041117|ref|YP_001540369.1| - 5.7e-06 25.9 0.0 0.01 15.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|159041117|ref|YP_001540369.1| - 1.4e-05 24.3 0.0 6.5e-05 22.0 0.0 2.2 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|159041117|ref|YP_001540369.1| - 4.7e-05 23.7 0.0 0.00011 22.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|159041117|ref|YP_001540369.1| - 5.7e-05 23.9 0.0 0.00015 22.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|159041117|ref|YP_001540369.1| - 0.00051 20.1 0.0 0.0012 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041117|ref|YP_001540369.1| - 0.0007 19.6 0.0 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|159041117|ref|YP_001540369.1| - 0.0016 17.6 0.1 0.02 14.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|159041117|ref|YP_001540369.1| - 0.0023 17.6 0.2 0.0072 16.0 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_24 PF13479.1 gi|159041117|ref|YP_001540369.1| - 0.0027 17.3 0.1 0.0056 16.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|159041117|ref|YP_001540369.1| - 0.0037 17.1 0.0 0.0085 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|159041117|ref|YP_001540369.1| - 0.0038 17.1 0.0 0.01 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF1160 PF06648.6 gi|159041117|ref|YP_001540369.1| - 0.0045 16.7 0.1 0.0096 15.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1160) NACHT PF05729.7 gi|159041117|ref|YP_001540369.1| - 0.0078 15.8 0.1 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Viral_helicase1 PF01443.13 gi|159041117|ref|YP_001540369.1| - 0.012 15.1 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.9 gi|159041117|ref|YP_001540369.1| - 0.019 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) UPF0079 PF02367.12 gi|159041117|ref|YP_001540369.1| - 0.02 14.5 0.1 0.037 13.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SKI PF01202.17 gi|159041117|ref|YP_001540369.1| - 0.029 14.2 0.1 0.054 13.3 0.1 1.4 1 0 0 1 1 1 0 Shikimate kinase NTPase_1 PF03266.10 gi|159041117|ref|YP_001540369.1| - 0.034 13.8 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 NTPase Thymidylate_kin PF02223.12 gi|159041117|ref|YP_001540369.1| - 0.038 13.3 0.0 0.089 12.1 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase DUF815 PF05673.8 gi|159041117|ref|YP_001540369.1| - 0.065 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|159041117|ref|YP_001540369.1| - 0.071 11.9 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|159041117|ref|YP_001540369.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|159041117|ref|YP_001540369.1| - 0.078 11.6 0.0 0.13 10.9 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus RNA_helicase PF00910.17 gi|159041117|ref|YP_001540369.1| - 0.09 12.9 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|159041117|ref|YP_001540369.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KaiC PF06745.8 gi|159041117|ref|YP_001540369.1| - 0.12 11.4 0.1 0.23 10.5 0.1 1.4 1 0 0 1 1 1 0 KaiC ABC_tran PF00005.22 gi|159041117|ref|YP_001540369.1| - 0.13 12.6 0.0 0.33 11.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|159041117|ref|YP_001540369.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein KTI12 PF08433.5 gi|159041117|ref|YP_001540369.1| - 0.13 11.4 0.1 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF58 PF01882.13 gi|159041118|ref|YP_001540370.1| - 1.5e-08 34.6 0.0 4.3e-08 33.1 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 Abi PF02517.11 gi|159041119|ref|YP_001540371.1| - 0.0066 16.5 3.7 0.0066 16.5 2.6 1.8 1 1 1 2 2 2 1 CAAX protease self-immunity PBP PF01161.15 gi|159041120|ref|YP_001540372.1| - 1.6e-22 79.8 0.0 2e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Radical_SAM PF04055.16 gi|159041121|ref|YP_001540373.1| - 3.4e-21 76.1 0.1 9.6e-20 71.4 0.0 2.7 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|159041121|ref|YP_001540373.1| - 2.5e-05 24.4 0.3 5.8e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|159041121|ref|YP_001540373.1| - 0.0011 18.0 1.9 0.0011 18.0 1.3 2.5 3 1 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159041121|ref|YP_001540373.1| - 0.0062 15.9 2.0 0.76 9.3 0.2 2.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|159041121|ref|YP_001540373.1| - 0.037 13.8 0.1 0.037 13.8 0.1 2.6 3 0 0 3 3 3 0 Double zinc ribbon UPF0547 PF10571.4 gi|159041121|ref|YP_001540373.1| - 0.077 12.7 0.3 0.077 12.7 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|159041121|ref|YP_001540373.1| - 0.099 12.6 4.0 1.8 8.6 0.0 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.6 gi|159041121|ref|YP_001540373.1| - 0.39 10.5 4.0 2.2 8.1 0.0 2.7 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.7 gi|159041121|ref|YP_001540373.1| - 4.1 6.7 9.5 1.6 8.1 2.6 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding RecR PF02132.10 gi|159041121|ref|YP_001540373.1| - 8.8 5.8 8.5 32 4.0 0.0 3.6 3 0 0 3 3 3 0 RecR protein PadR PF03551.9 gi|159041122|ref|YP_001540374.1| - 0.0015 18.2 0.2 0.002 17.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|159041122|ref|YP_001540374.1| - 0.0021 17.6 0.8 0.0048 16.5 0.6 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|159041122|ref|YP_001540374.1| - 0.12 12.5 0.1 0.12 12.4 0.1 1.1 1 0 0 1 1 1 0 Penicillinase repressor AAA PF00004.24 gi|159041123|ref|YP_001540375.1| - 3.5e-100 331.4 0.0 2.3e-49 166.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|159041123|ref|YP_001540375.1| - 8.8e-28 96.0 0.3 9.1e-27 92.8 0.8 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|159041123|ref|YP_001540375.1| - 7.5e-17 61.1 0.1 3.9e-07 29.3 0.0 3.1 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|159041123|ref|YP_001540375.1| - 2.6e-14 53.5 0.1 5.6e-06 26.5 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|159041123|ref|YP_001540375.1| - 1.9e-13 50.4 0.0 6.6e-06 26.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|159041123|ref|YP_001540375.1| - 2.3e-13 51.0 0.1 3.2e-06 27.9 0.0 3.4 3 2 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|159041123|ref|YP_001540375.1| - 5.3e-13 49.2 0.0 7.3e-06 25.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|159041123|ref|YP_001540375.1| - 6.7e-13 49.0 0.0 4e-06 26.9 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|159041123|ref|YP_001540375.1| - 1.6e-12 47.3 2.5 0.00012 21.7 0.4 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|159041123|ref|YP_001540375.1| - 1.3e-10 40.5 2.3 0.00031 19.5 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|159041123|ref|YP_001540375.1| - 1.6e-10 40.9 0.0 8.7e-05 22.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|159041123|ref|YP_001540375.1| - 5.8e-10 38.8 0.5 0.0013 18.1 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|159041123|ref|YP_001540375.1| - 2e-09 37.6 0.0 0.0022 17.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|159041123|ref|YP_001540375.1| - 2.3e-09 36.8 0.8 0.00092 18.9 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|159041123|ref|YP_001540375.1| - 3.5e-09 36.0 0.2 0.00095 18.3 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin CDC48_2 PF02933.12 gi|159041123|ref|YP_001540375.1| - 5.5e-09 35.5 0.6 5.5e-09 35.5 0.4 1.9 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_18 PF13238.1 gi|159041123|ref|YP_001540375.1| - 4.3e-08 33.5 0.0 0.015 15.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|159041123|ref|YP_001540375.1| - 5.8e-07 28.8 0.9 0.027 13.6 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI UFD1 PF03152.9 gi|159041123|ref|YP_001540375.1| - 9.6e-07 28.0 1.1 2e-06 27.0 0.7 1.5 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 Sigma54_activat PF00158.21 gi|159041123|ref|YP_001540375.1| - 1.6e-06 27.7 0.1 0.082 12.3 0.0 3.3 2 2 0 2 2 2 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|159041123|ref|YP_001540375.1| - 1.6e-06 28.2 0.0 0.089 12.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|159041123|ref|YP_001540375.1| - 2.2e-06 27.0 0.8 0.087 12.0 0.0 3.4 3 0 0 3 3 3 2 PhoH-like protein AAA_25 PF13481.1 gi|159041123|ref|YP_001540375.1| - 5.7e-06 25.8 10.1 0.099 12.0 0.1 4.6 2 2 2 4 4 4 2 AAA domain RNA_helicase PF00910.17 gi|159041123|ref|YP_001540375.1| - 6.7e-06 26.2 0.0 0.13 12.4 0.0 2.7 2 0 0 2 2 2 2 RNA helicase KaiC PF06745.8 gi|159041123|ref|YP_001540375.1| - 9.9e-06 24.8 0.4 0.46 9.5 0.0 3.8 2 1 0 3 3 3 2 KaiC AAA_24 PF13479.1 gi|159041123|ref|YP_001540375.1| - 2.3e-05 24.0 0.5 0.52 9.8 0.0 3.3 3 0 0 3 3 3 2 AAA domain DUF815 PF05673.8 gi|159041123|ref|YP_001540375.1| - 3.8e-05 22.7 0.0 0.24 10.3 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|159041123|ref|YP_001540375.1| - 4.4e-05 23.7 0.0 0.22 11.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|159041123|ref|YP_001540375.1| - 6.7e-05 22.6 0.4 0.47 10.1 0.0 3.4 3 0 0 3 3 3 1 NACHT domain UPF0079 PF02367.12 gi|159041123|ref|YP_001540375.1| - 0.00012 21.7 0.1 3.4 7.3 0.0 3.6 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 AAA_3 PF07726.6 gi|159041123|ref|YP_001540375.1| - 0.00018 21.1 0.0 0.59 9.7 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|159041123|ref|YP_001540375.1| - 0.00032 20.4 3.2 0.41 10.2 0.0 4.1 3 2 1 4 4 4 1 Archaeal ATPase Parvo_NS1 PF01057.12 gi|159041123|ref|YP_001540375.1| - 0.00032 19.6 0.1 0.66 8.7 0.0 2.5 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|159041123|ref|YP_001540375.1| - 0.00047 19.8 3.4 2.3 7.8 0.0 4.8 3 2 2 5 5 4 1 NTPase Vps4_C PF09336.5 gi|159041123|ref|YP_001540375.1| - 0.00056 19.7 0.5 0.14 12.0 0.0 3.0 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain NB-ARC PF00931.17 gi|159041123|ref|YP_001540375.1| - 0.00087 18.2 0.0 1 8.1 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|159041123|ref|YP_001540375.1| - 0.0011 18.0 0.0 0.71 8.7 0.0 2.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|159041123|ref|YP_001540375.1| - 0.0014 18.2 0.0 0.048 13.1 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase T2SE PF00437.15 gi|159041123|ref|YP_001540375.1| - 0.0016 17.3 0.2 0.93 8.3 0.1 3.0 2 1 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|159041123|ref|YP_001540375.1| - 0.002 17.7 0.0 0.89 9.0 0.0 2.8 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|159041123|ref|YP_001540375.1| - 0.0023 17.8 0.0 2.1 8.2 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|159041123|ref|YP_001540375.1| - 0.0033 17.0 0.0 2.6 7.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|159041123|ref|YP_001540375.1| - 0.0041 17.0 0.0 1.9 8.3 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family Guanylate_kin PF00625.16 gi|159041123|ref|YP_001540375.1| - 0.0042 16.5 0.2 17 4.7 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase Bac_DnaA PF00308.13 gi|159041123|ref|YP_001540375.1| - 0.0045 16.6 0.0 3.4 7.2 0.0 2.9 2 1 0 2 2 2 0 Bacterial dnaA protein PduV-EutP PF10662.4 gi|159041123|ref|YP_001540375.1| - 0.0053 16.2 0.0 1.8 8.0 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|159041123|ref|YP_001540375.1| - 0.0064 15.9 0.6 2.2 7.6 0.1 3.2 2 1 0 2 2 2 1 AAA-like domain ResIII PF04851.10 gi|159041123|ref|YP_001540375.1| - 0.0066 16.2 0.0 3.6 7.3 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|159041123|ref|YP_001540375.1| - 0.0071 15.8 0.0 3.1 7.2 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|159041123|ref|YP_001540375.1| - 0.0084 15.8 0.3 6 6.5 0.0 3.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4358 PF14270.1 gi|159041123|ref|YP_001540375.1| - 0.022 14.6 0.1 0.062 13.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) AAA_29 PF13555.1 gi|159041123|ref|YP_001540375.1| - 0.041 13.4 0.0 7.3 6.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain IPT PF01745.11 gi|159041123|ref|YP_001540375.1| - 0.041 13.0 0.3 1.6 7.8 0.0 2.7 3 0 0 3 3 2 0 Isopentenyl transferase cobW PF02492.14 gi|159041123|ref|YP_001540375.1| - 0.085 12.2 0.2 15 4.9 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|159041123|ref|YP_001540375.1| - 0.091 11.9 0.0 3.3 6.8 0.0 2.6 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Lipase_GDSL_2 PF13472.1 gi|159041123|ref|YP_001540375.1| - 0.11 12.5 0.6 19 5.3 0.1 3.7 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Glyco_hydro_57 PF03065.10 gi|159041123|ref|YP_001540375.1| - 0.16 10.8 0.1 6.1 5.6 0.0 2.6 3 0 0 3 3 3 0 Glycosyl hydrolase family 57 EF1_GNE PF00736.14 gi|159041124|ref|YP_001540376.1| - 9.7e-19 66.8 0.3 1e-18 66.7 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3970 PF13113.1 gi|159041124|ref|YP_001540376.1| - 0.079 12.6 0.1 0.079 12.6 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3970) DUF1610 PF07754.6 gi|159041125|ref|YP_001540377.1| - 1.2e-14 54.0 20.6 5.3e-10 39.2 2.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|159041125|ref|YP_001540377.1| - 0.00092 18.9 11.1 0.12 12.2 7.7 2.3 1 1 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|159041125|ref|YP_001540377.1| - 0.0052 16.2 5.5 0.021 14.3 0.0 2.1 1 1 1 2 2 2 1 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|159041125|ref|YP_001540377.1| - 0.006 15.7 15.2 0.18 11.0 0.1 3.7 4 0 0 4 4 4 2 zinc-ribbon domain PolC_DP2 PF03833.8 gi|159041125|ref|YP_001540377.1| - 0.0079 13.9 5.2 0.0093 13.6 3.6 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 C1_3 PF07649.7 gi|159041125|ref|YP_001540377.1| - 0.012 15.5 1.8 0.012 15.5 1.3 2.8 2 1 1 3 3 2 0 C1-like domain Ribosomal_L32p PF01783.18 gi|159041125|ref|YP_001540377.1| - 0.03 14.4 1.2 0.03 14.4 0.8 2.6 1 1 1 2 2 2 0 Ribosomal L32p protein family Zn_ribbon_recom PF13408.1 gi|159041125|ref|YP_001540377.1| - 0.045 14.0 9.6 0.068 13.4 6.7 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Desulfoferrod_N PF06397.7 gi|159041125|ref|YP_001540377.1| - 0.048 13.0 14.2 0.31 10.4 0.4 3.6 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-RING_5 PF14634.1 gi|159041125|ref|YP_001540377.1| - 0.055 13.2 12.1 5.5 6.7 8.4 2.8 1 1 0 1 1 1 0 zinc-RING finger domain zf-B_box PF00643.19 gi|159041125|ref|YP_001540377.1| - 0.055 13.3 10.2 3.5 7.5 0.0 3.0 2 1 1 3 3 3 0 B-box zinc finger DNA_RNApol_7kD PF03604.8 gi|159041125|ref|YP_001540377.1| - 0.055 12.9 0.3 0.055 12.9 0.2 2.9 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|159041125|ref|YP_001540377.1| - 0.058 13.0 1.3 0.058 13.0 0.9 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|159041125|ref|YP_001540377.1| - 0.073 12.7 11.9 0.58 9.8 5.7 2.5 1 1 2 3 3 3 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|159041125|ref|YP_001540377.1| - 0.12 12.1 10.4 0.46 10.2 3.8 2.7 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|159041125|ref|YP_001540377.1| - 0.14 11.7 21.2 0.28 10.7 5.3 3.8 2 2 1 3 3 3 0 zinc-ribbon domain FYVE_2 PF02318.11 gi|159041125|ref|YP_001540377.1| - 0.17 11.7 2.2 0.2 11.5 1.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-UBP PF02148.14 gi|159041125|ref|YP_001540377.1| - 0.23 11.5 8.0 3.4 7.8 0.6 2.9 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-FPG_IleRS PF06827.9 gi|159041125|ref|YP_001540377.1| - 0.45 10.2 16.1 0.66 9.6 1.0 3.6 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|159041125|ref|YP_001540377.1| - 0.57 10.0 18.5 39 4.1 0.0 3.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-C3HC4_4 PF15227.1 gi|159041125|ref|YP_001540377.1| - 0.62 9.9 8.3 0.8 9.6 0.7 2.3 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING DUF2752 PF10825.3 gi|159041125|ref|YP_001540377.1| - 0.64 10.0 8.2 1 9.4 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) NinF PF05810.7 gi|159041125|ref|YP_001540377.1| - 0.94 9.3 5.5 4.4 7.1 1.4 2.3 1 1 1 2 2 2 0 NinF protein PhnA_Zn_Ribbon PF08274.7 gi|159041125|ref|YP_001540377.1| - 0.94 9.3 11.5 2.3 8.0 0.2 3.9 2 1 1 3 3 3 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.1 gi|159041125|ref|YP_001540377.1| - 1.1 8.4 16.8 2.6 7.2 0.2 3.7 2 1 1 3 3 3 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|159041125|ref|YP_001540377.1| - 1.2 9.1 16.8 15 5.6 6.8 3.3 1 1 0 2 2 2 0 Zinc ribbon domain NMD3 PF04981.8 gi|159041125|ref|YP_001540377.1| - 1.2 8.1 7.5 1.5 7.8 5.2 1.1 1 0 0 1 1 1 0 NMD3 family zf-UBR PF02207.15 gi|159041125|ref|YP_001540377.1| - 1.3 8.7 10.0 2.5 7.8 0.8 2.1 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Auto_anti-p27 PF06677.7 gi|159041125|ref|YP_001540377.1| - 1.7 8.5 11.8 0.11 12.2 1.0 2.5 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-CHY PF05495.7 gi|159041125|ref|YP_001540377.1| - 1.7 8.8 8.6 3.9 7.7 6.0 1.6 1 1 0 1 1 1 0 CHY zinc finger zf-C2H2_4 PF13894.1 gi|159041125|ref|YP_001540377.1| - 1.8 9.1 18.5 5.3 7.6 0.3 4.1 2 2 2 4 4 4 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|159041125|ref|YP_001540377.1| - 1.9 7.8 18.1 0.42 9.9 3.5 3.1 2 1 1 3 3 3 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|159041125|ref|YP_001540377.1| - 2.2 8.0 15.0 6.2 6.6 0.2 3.8 2 1 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2 PF00096.21 gi|159041125|ref|YP_001540377.1| - 2.2 8.7 16.9 12 6.5 0.2 4.1 3 1 1 4 4 4 0 Zinc finger, C2H2 type DUF1272 PF06906.6 gi|159041125|ref|YP_001540377.1| - 2.5 8.0 12.5 3.9e+02 0.9 8.6 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Nudix_N_2 PF14803.1 gi|159041125|ref|YP_001540377.1| - 2.6 7.8 12.9 1.1 9.0 0.2 3.7 4 0 0 4 4 4 0 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|159041125|ref|YP_001540377.1| - 2.9 7.6 12.0 1e+02 2.6 8.3 2.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.8 gi|159041125|ref|YP_001540377.1| - 4 7.2 10.2 14 5.5 0.1 2.6 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type FYVE PF01363.16 gi|159041125|ref|YP_001540377.1| - 4.1 7.3 8.9 0.48 10.3 2.8 1.8 1 1 1 2 2 2 0 FYVE zinc finger Rubredoxin PF00301.15 gi|159041125|ref|YP_001540377.1| - 4.5 7.2 17.4 2.9 7.8 0.2 3.9 1 1 2 3 3 3 0 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|159041125|ref|YP_001540377.1| - 4.8 6.8 17.9 2.4 7.8 0.2 3.6 2 2 1 3 3 3 0 Sec23/Sec24 zinc finger ZZ PF00569.12 gi|159041125|ref|YP_001540377.1| - 5 6.7 11.7 6.1 6.4 4.9 2.8 1 1 1 2 2 2 0 Zinc finger, ZZ type Elf1 PF05129.8 gi|159041125|ref|YP_001540377.1| - 5.1 6.8 9.0 8.4 6.1 3.8 2.7 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Ribosomal_L37ae PF01780.14 gi|159041125|ref|YP_001540377.1| - 5.1 7.0 10.9 50 3.8 4.3 3.1 1 1 1 2 2 2 0 Ribosomal L37ae protein family Tnp_zf-ribbon_2 PF13842.1 gi|159041125|ref|YP_001540377.1| - 6.1 7.3 15.0 26 5.3 2.5 3.1 1 1 1 2 2 1 0 DDE_Tnp_1-like zinc-ribbon NOB1_Zn_bind PF08772.6 gi|159041125|ref|YP_001540377.1| - 7.6 6.4 11.0 3.4 7.5 4.9 2.1 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-MIZ PF02891.15 gi|159041125|ref|YP_001540377.1| - 8.5 5.9 11.8 12 5.5 0.4 2.9 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger Epimerase PF01370.16 gi|159041127|ref|YP_001540379.1| - 2.4e-50 171.2 0.1 3.5e-50 170.6 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|159041127|ref|YP_001540379.1| - 1.2e-21 76.6 0.1 1.5e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|159041127|ref|YP_001540379.1| - 1.2e-19 70.2 0.0 2e-19 69.5 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|159041127|ref|YP_001540379.1| - 3e-15 55.9 0.0 1.3e-14 53.8 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|159041127|ref|YP_001540379.1| - 1.3e-11 44.7 0.1 4.1e-11 43.2 0.0 1.8 1 1 1 2 2 2 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|159041127|ref|YP_001540379.1| - 2.4e-11 43.0 0.4 1.9e-09 36.8 0.3 2.3 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|159041127|ref|YP_001540379.1| - 1.7e-07 31.3 0.4 7.8e-07 29.1 0.3 2.0 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|159041127|ref|YP_001540379.1| - 8.1e-06 25.2 0.1 1.4e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|159041127|ref|YP_001540379.1| - 0.014 15.0 0.2 0.035 13.7 0.2 1.7 1 1 0 1 1 1 0 KR domain PHB_acc_N PF07879.6 gi|159041127|ref|YP_001540379.1| - 0.081 12.6 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain eIF-1a PF01176.14 gi|159041129|ref|YP_001540381.1| - 5.3e-24 83.4 0.5 7e-24 83.0 0.3 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2757 PF10955.3 gi|159041129|ref|YP_001540381.1| - 0.076 13.2 0.0 0.34 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) Fer4_9 PF13187.1 gi|159041130|ref|YP_001540382.1| - 1e-10 41.7 32.4 1.8e-06 28.1 8.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159041130|ref|YP_001540382.1| - 8e-10 37.8 13.1 6.1e-06 25.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159041130|ref|YP_001540382.1| - 8.7e-09 35.6 9.8 1.5e-08 34.8 6.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159041130|ref|YP_001540382.1| - 1.2e-08 34.6 21.2 1.5e-06 27.9 7.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159041130|ref|YP_001540382.1| - 2.1e-08 33.8 21.8 4.9e-06 26.2 8.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041130|ref|YP_001540382.1| - 3.6e-08 32.8 10.9 0.00027 20.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|159041130|ref|YP_001540382.1| - 4e-08 33.1 21.9 1.2e-06 28.4 7.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159041130|ref|YP_001540382.1| - 1.4e-07 31.0 11.4 0.00024 20.8 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|159041130|ref|YP_001540382.1| - 7.5e-06 25.8 11.1 0.00082 19.5 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|159041130|ref|YP_001540382.1| - 7.3e-05 23.1 10.5 0.0083 16.5 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041130|ref|YP_001540382.1| - 0.0001 22.9 11.7 0.03 15.0 0.9 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|159041130|ref|YP_001540382.1| - 0.0001 22.5 10.4 0.018 15.3 0.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|159041130|ref|YP_001540382.1| - 0.00012 21.9 3.1 0.00014 21.7 2.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159041130|ref|YP_001540382.1| - 0.00014 22.3 12.6 0.0012 19.3 1.2 2.4 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|159041130|ref|YP_001540382.1| - 0.0003 21.1 11.1 0.0027 18.0 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|159041130|ref|YP_001540382.1| - 0.00038 20.8 15.5 0.0043 17.5 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain DUF678 PF05077.7 gi|159041130|ref|YP_001540382.1| - 0.058 13.3 4.0 0.08 12.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) DUF4432 PF14486.1 gi|159041131|ref|YP_001540383.1| - 2e-11 43.0 0.0 1.8e-08 33.3 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF4432) HTH_10 PF04967.7 gi|159041132|ref|YP_001540384.1| - 2.8e-15 55.6 0.0 4.6e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|159041132|ref|YP_001540384.1| - 0.00012 21.3 0.1 0.00027 20.2 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|159041132|ref|YP_001540384.1| - 0.00016 21.2 0.1 0.00033 20.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|159041132|ref|YP_001540384.1| - 0.0002 20.9 0.1 0.00036 20.1 0.1 1.4 1 0 0 1 1 1 1 MarR family SpoIIID PF12116.3 gi|159041132|ref|YP_001540384.1| - 0.00073 19.4 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 Stage III sporulation protein D HTH_11 PF08279.7 gi|159041132|ref|YP_001540384.1| - 0.001 18.7 0.3 0.0022 17.5 0.2 1.6 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|159041132|ref|YP_001540384.1| - 0.0013 18.1 0.0 0.0032 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|159041132|ref|YP_001540384.1| - 0.0046 16.6 0.0 0.0092 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AraC PF00165.18 gi|159041132|ref|YP_001540384.1| - 0.0046 16.7 0.0 0.012 15.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_AsnC-type PF13404.1 gi|159041132|ref|YP_001540384.1| - 0.007 15.8 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|159041132|ref|YP_001540384.1| - 0.012 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Mga PF05043.8 gi|159041132|ref|YP_001540384.1| - 0.012 15.9 0.0 0.028 14.6 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_6 PF01418.12 gi|159041132|ref|YP_001540384.1| - 0.015 15.0 0.0 0.031 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_28 PF13518.1 gi|159041132|ref|YP_001540384.1| - 0.029 14.3 0.0 0.082 12.9 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|159041132|ref|YP_001540384.1| - 0.029 14.1 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_31 PF13560.1 gi|159041132|ref|YP_001540384.1| - 0.029 14.5 0.2 0.054 13.7 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|159041132|ref|YP_001540384.1| - 0.039 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family GntR PF00392.16 gi|159041132|ref|YP_001540384.1| - 0.045 13.2 0.1 0.1 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family IF2_N PF04760.10 gi|159041132|ref|YP_001540384.1| - 0.053 13.1 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_Tnp_4 PF13613.1 gi|159041132|ref|YP_001540384.1| - 0.065 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_20 PF12840.2 gi|159041132|ref|YP_001540384.1| - 0.069 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|159041132|ref|YP_001540384.1| - 0.08 13.1 0.1 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.2 gi|159041132|ref|YP_001540384.1| - 0.082 13.1 0.1 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_DBD PF04552.8 gi|159041132|ref|YP_001540384.1| - 0.094 12.2 0.1 0.25 10.8 0.0 1.7 1 1 0 1 1 1 0 Sigma-54, DNA binding domain Sigma70_r4_2 PF08281.7 gi|159041132|ref|YP_001540384.1| - 0.098 12.1 0.2 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 SBP_bac_5 PF00496.17 gi|159041133|ref|YP_001540385.1| - 3e-25 88.8 9.6 5.4e-25 88.0 6.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041133|ref|YP_001540385.1| - 0.017 14.7 11.0 0.028 14.0 7.6 1.3 1 0 0 1 1 1 0 Rifin/stevor family Peptidase_M20 PF01546.23 gi|159041134|ref|YP_001540386.1| - 1.3e-35 122.6 0.0 1.6e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|159041134|ref|YP_001540386.1| - 5.5e-20 71.1 0.0 1.1e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF3311 PF11755.3 gi|159041135|ref|YP_001540387.1| - 7e-18 63.9 8.7 7.8e-18 63.7 6.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.3 gi|159041135|ref|YP_001540387.1| - 0.0077 15.9 0.6 0.0096 15.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2975) DUF997 PF06196.7 gi|159041135|ref|YP_001540387.1| - 0.66 9.5 6.9 0.9 9.0 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF997) SSF PF00474.12 gi|159041136|ref|YP_001540388.1| - 1.1e-11 44.0 35.7 1.8e-10 40.0 24.7 2.3 1 1 0 1 1 1 1 Sodium:solute symporter family Acyl-CoA_dh_1 PF00441.19 gi|159041137|ref|YP_001540389.1| - 1.5e-35 122.5 1.3 2.1e-35 122.0 0.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|159041137|ref|YP_001540389.1| - 5.4e-20 72.0 0.0 1.4e-19 70.7 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|159041137|ref|YP_001540389.1| - 2.8e-14 53.4 0.3 4.3e-14 52.8 0.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|159041137|ref|YP_001540389.1| - 1.2e-10 40.6 0.2 3.2e-10 39.3 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain SIS PF01380.17 gi|159041138|ref|YP_001540390.1| - 7.7e-34 116.1 0.1 4.9e-25 87.6 0.0 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|159041138|ref|YP_001540390.1| - 8.8e-18 64.5 0.0 1.8e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|159041138|ref|YP_001540390.1| - 1.4e-11 43.7 0.1 5.4e-08 31.9 0.0 2.6 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|159041138|ref|YP_001540390.1| - 2.7e-10 40.0 0.0 4.7e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|159041138|ref|YP_001540390.1| - 9e-06 24.5 0.0 1.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|159041138|ref|YP_001540390.1| - 0.0007 19.3 0.0 0.0032 17.1 0.0 2.2 2 0 0 2 2 2 1 SIS domain SCF PF02404.10 gi|159041138|ref|YP_001540390.1| - 0.074 12.2 0.1 0.12 11.5 0.1 1.2 1 0 0 1 1 1 0 Stem cell factor DSPc PF00782.15 gi|159041139|ref|YP_001540391.1| - 1.3e-17 63.6 0.0 1.5e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.7 gi|159041139|ref|YP_001540391.1| - 1e-05 25.0 0.0 1.3e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.22 gi|159041139|ref|YP_001540391.1| - 2.1e-05 24.0 0.0 2.2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|159041139|ref|YP_001540391.1| - 0.00032 20.7 0.0 0.00045 20.3 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate UBA_3 PF09288.5 gi|159041139|ref|YP_001540391.1| - 0.045 13.3 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 Fungal ubiquitin-associated domain DUF504 PF04457.7 gi|159041140|ref|YP_001540392.1| - 2.7e-15 56.2 0.1 2.7e-15 56.2 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF504) S1 PF00575.18 gi|159041140|ref|YP_001540392.1| - 0.11 12.6 0.3 0.25 11.4 0.1 1.7 2 1 0 2 2 2 0 S1 RNA binding domain TPR_19 PF14559.1 gi|159041141|ref|YP_001540393.1| - 1.5e-05 25.2 0.2 0.17 12.2 0.1 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|159041141|ref|YP_001540393.1| - 4e-05 23.4 2.9 0.054 13.4 0.9 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|159041141|ref|YP_001540393.1| - 0.0069 16.2 2.0 13 5.9 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|159041141|ref|YP_001540393.1| - 0.0079 15.9 3.1 1.3 8.9 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|159041141|ref|YP_001540393.1| - 0.0082 16.6 0.8 21 6.1 0.0 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|159041141|ref|YP_001540393.1| - 0.0088 15.4 0.5 0.17 11.2 0.0 2.7 2 1 1 3 3 3 1 26S proteasome subunit RPN7 TPR_7 PF13176.1 gi|159041141|ref|YP_001540393.1| - 0.042 13.6 3.7 6.4 6.8 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat BRE PF06113.7 gi|159041141|ref|YP_001540393.1| - 0.15 11.0 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Brain and reproductive organ-expressed protein (BRE) NTP_transferase PF00483.18 gi|159041142|ref|YP_001540394.1| - 6.2e-42 143.5 0.0 8.4e-42 143.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|159041142|ref|YP_001540394.1| - 2.2e-17 61.6 12.0 5.7e-08 31.9 0.4 4.2 3 2 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|159041142|ref|YP_001540394.1| - 1.7e-08 34.7 0.0 3.1e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|159041142|ref|YP_001540394.1| - 0.0013 18.2 11.1 0.1 12.1 0.2 4.3 4 1 1 5 5 5 2 Hexapeptide repeat of succinyl-transferase K_trans PF02705.11 gi|159041143|ref|YP_001540395.1| - 0.11 10.8 7.3 0.13 10.5 5.0 1.1 1 0 0 1 1 1 0 K+ potassium transporter PGG PF13962.1 gi|159041143|ref|YP_001540395.1| - 0.18 11.4 4.0 0.097 12.2 0.9 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF624 PF04854.9 gi|159041143|ref|YP_001540395.1| - 0.65 9.8 7.1 0.77 9.6 5.0 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF624 Bac_export_2 PF01312.14 gi|159041143|ref|YP_001540395.1| - 2.1 7.1 5.4 2.2 7.0 3.7 1.0 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family FA_desaturase PF00487.19 gi|159041143|ref|YP_001540395.1| - 6.5 6.1 6.1 7.2 5.9 4.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Pribosyltran PF00156.22 gi|159041144|ref|YP_001540396.1| - 1.4e-15 57.0 0.1 2.2e-15 56.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|159041144|ref|YP_001540396.1| - 0.0023 17.1 0.6 0.0042 16.3 0.1 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase HTH_3 PF01381.17 gi|159041144|ref|YP_001540396.1| - 0.022 14.6 0.1 0.089 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix DHO_dh PF01180.16 gi|159041145|ref|YP_001540397.1| - 1.5e-33 116.0 0.0 2.5e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Pribosyltran PF00156.22 gi|159041146|ref|YP_001540398.1| - 7.3e-15 54.8 1.5 2.6e-14 53.0 1.0 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|159041146|ref|YP_001540398.1| - 0.0018 17.5 0.0 0.0022 17.2 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|159041146|ref|YP_001540398.1| - 0.0046 16.2 0.0 0.0063 15.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase PyrI PF01948.13 gi|159041147|ref|YP_001540399.1| - 2.1e-35 120.5 1.4 3.3e-35 119.9 0.9 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|159041147|ref|YP_001540399.1| - 9.8e-17 60.1 0.3 1.5e-16 59.5 0.2 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Fer4_7 PF12838.2 gi|159041148|ref|YP_001540400.1| - 3.4e-14 52.9 19.9 1.2e-08 35.1 6.6 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159041148|ref|YP_001540400.1| - 3.2e-12 45.5 14.5 3.8e-10 38.9 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159041148|ref|YP_001540400.1| - 1.6e-08 35.1 6.7 9.8e-05 23.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|159041148|ref|YP_001540400.1| - 5.4e-08 32.3 3.6 5.4e-08 32.3 2.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|159041148|ref|YP_001540400.1| - 7.3e-08 32.8 9.4 2.4e-07 31.2 6.5 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|159041148|ref|YP_001540400.1| - 1.2e-07 31.4 7.3 1.2e-07 31.4 5.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159041148|ref|YP_001540400.1| - 1.3e-07 31.3 7.8 1.8e-07 30.8 5.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041148|ref|YP_001540400.1| - 3.1e-07 30.5 9.7 1e-06 28.9 6.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041148|ref|YP_001540400.1| - 3.4e-07 29.7 3.8 3.4e-07 29.7 2.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|159041148|ref|YP_001540400.1| - 3.5e-05 24.0 11.0 0.0021 18.3 1.0 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|159041148|ref|YP_001540400.1| - 4.4e-05 23.7 16.5 0.00031 21.0 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|159041148|ref|YP_001540400.1| - 5.7e-05 22.9 3.5 0.00012 21.8 2.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|159041148|ref|YP_001540400.1| - 6.9e-05 22.8 2.9 6.9e-05 22.8 2.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|159041148|ref|YP_001540400.1| - 0.0002 21.3 8.8 0.00076 19.4 6.1 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159041148|ref|YP_001540400.1| - 0.00084 19.7 1.4 0.00084 19.7 0.9 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159041148|ref|YP_001540400.1| - 0.0024 18.2 11.0 0.034 14.5 7.6 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Thioredoxin_2 PF13098.1 gi|159041148|ref|YP_001540400.1| - 0.093 12.9 2.4 0.22 11.7 1.6 1.6 1 1 0 1 1 1 0 Thioredoxin-like domain SLT_L PF14718.1 gi|159041148|ref|YP_001540400.1| - 0.14 12.0 1.6 0.36 10.6 0.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain Myc_N PF01056.13 gi|159041149|ref|YP_001540401.1| - 0.16 11.1 1.2 0.17 11.0 0.8 1.2 1 0 0 1 1 1 0 Myc amino-terminal region COXG PF06240.8 gi|159041150|ref|YP_001540402.1| - 9.6e-21 73.9 0.2 1.2e-20 73.6 0.1 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) HTH_24 PF13412.1 gi|159041151|ref|YP_001540403.1| - 2.2e-06 26.9 0.1 5e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|159041151|ref|YP_001540403.1| - 0.0016 18.0 0.0 0.004 16.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|159041151|ref|YP_001540403.1| - 0.0022 17.5 0.0 0.0052 16.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rifin_STEVOR PF02009.11 gi|159041151|ref|YP_001540403.1| - 0.0093 15.6 10.6 0.013 15.1 7.4 1.1 1 0 0 1 1 1 1 Rifin/stevor family HTH_20 PF12840.2 gi|159041151|ref|YP_001540403.1| - 0.026 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MSC PF09402.5 gi|159041151|ref|YP_001540403.1| - 0.17 10.5 1.2 0.24 10.0 0.9 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain Plasmodium_Vir PF05795.6 gi|159041151|ref|YP_001540403.1| - 0.42 9.7 2.3 0.7 9.0 1.6 1.3 1 0 0 1 1 1 0 Plasmodium vivax Vir protein MarR PF01047.17 gi|159041151|ref|YP_001540403.1| - 0.61 9.8 0.1 0.61 9.8 0.0 2.9 4 0 0 4 4 2 0 MarR family DUF812 PF05667.6 gi|159041151|ref|YP_001540403.1| - 1.4 7.3 6.9 2.1 6.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Amnionless PF14828.1 gi|159041151|ref|YP_001540403.1| - 1.8 7.0 6.3 0.91 7.9 0.9 2.0 1 1 1 2 2 2 0 Amnionless Macoilin PF09726.4 gi|159041151|ref|YP_001540403.1| - 9.5 4.3 10.2 12 3.9 7.0 1.0 1 0 0 1 1 1 0 Transmembrane protein Fer4_8 PF13183.1 gi|159041153|ref|YP_001540405.1| - 4.7e-11 42.5 3.2 4.7e-11 42.5 2.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159041153|ref|YP_001540405.1| - 2.7e-09 37.3 1.4 0.00073 19.9 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041153|ref|YP_001540405.1| - 3.6e-08 33.6 5.1 3.6e-08 33.6 3.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.11 gi|159041153|ref|YP_001540405.1| - 4.4e-08 33.0 0.1 2.9e-07 30.4 0.0 2.4 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_9 PF13187.1 gi|159041153|ref|YP_001540405.1| - 1.6e-07 31.4 3.8 1.6e-07 31.4 2.7 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159041153|ref|YP_001540405.1| - 5.2e-06 26.7 7.0 5.2e-06 26.7 4.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159041153|ref|YP_001540405.1| - 1.4e-05 24.4 11.9 0.0058 16.1 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159041153|ref|YP_001540405.1| - 0.0016 18.1 12.8 0.0016 18.1 8.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|159041153|ref|YP_001540405.1| - 0.012 15.8 2.3 0.012 15.8 1.6 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|159041153|ref|YP_001540405.1| - 0.016 15.1 17.9 0.016 15.0 2.1 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|159041153|ref|YP_001540405.1| - 0.033 14.7 4.2 0.033 14.7 2.9 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041153|ref|YP_001540405.1| - 0.033 14.0 1.8 0.033 14.0 1.2 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|159041153|ref|YP_001540405.1| - 0.067 12.8 2.8 0.83 9.2 0.0 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|159041153|ref|YP_001540405.1| - 0.092 12.6 11.2 0.73 9.7 0.3 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041153|ref|YP_001540405.1| - 0.13 13.0 17.0 1.5 9.6 10.0 3.1 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Nitrate_red_gam PF02665.9 gi|159041154|ref|YP_001540406.1| - 1.2e-09 37.8 11.6 3.3e-09 36.4 8.0 1.6 1 1 0 1 1 1 1 Nitrate reductase gamma subunit DUF3082 PF11282.3 gi|159041154|ref|YP_001540406.1| - 0.13 12.3 2.7 2.8 8.0 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3082) Tetraspannin PF00335.15 gi|159041154|ref|YP_001540406.1| - 1.1 8.5 9.2 0.66 9.2 5.1 1.6 2 0 0 2 2 2 0 Tetraspanin family FtsX PF02687.16 gi|159041154|ref|YP_001540406.1| - 4.4 7.0 19.6 0.78 9.5 2.5 2.2 2 0 0 2 2 2 0 FtsX-like permease family DUF4428 PF14471.1 gi|159041155|ref|YP_001540407.1| - 0.33 10.7 2.0 0.57 9.9 1.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) RNA_POL_M_15KD PF02150.11 gi|159041155|ref|YP_001540407.1| - 0.43 10.2 5.4 6.1 6.6 0.8 3.1 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|159041155|ref|YP_001540407.1| - 0.73 9.5 6.7 8.4 6.1 0.2 3.5 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.1 gi|159041155|ref|YP_001540407.1| - 1.7 9.1 4.7 16 5.9 0.0 2.8 3 0 0 3 3 3 0 Zinc-finger double domain Methyltransf_26 PF13659.1 gi|159041156|ref|YP_001540408.1| - 7e-13 48.6 0.0 9.8e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|159041156|ref|YP_001540408.1| - 1.6e-11 44.1 0.0 2.3e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|159041156|ref|YP_001540408.1| - 1.7e-09 37.2 0.0 2.1e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|159041156|ref|YP_001540408.1| - 9.1e-07 28.5 0.0 1.1e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|159041156|ref|YP_001540408.1| - 2.4e-05 23.5 0.0 3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|159041156|ref|YP_001540408.1| - 0.0002 20.7 0.0 0.00025 20.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|159041156|ref|YP_001540408.1| - 0.00024 21.4 0.0 0.00036 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041156|ref|YP_001540408.1| - 0.00029 21.4 0.0 0.00039 20.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159041156|ref|YP_001540408.1| - 0.0092 16.4 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|159041156|ref|YP_001540408.1| - 0.014 15.8 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.11 gi|159041156|ref|YP_001540408.1| - 0.015 14.3 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF43 Met_10 PF02475.11 gi|159041156|ref|YP_001540408.1| - 0.022 14.3 0.0 0.052 13.1 0.0 1.6 2 0 0 2 2 2 0 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|159041156|ref|YP_001540408.1| - 0.041 13.4 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase ZapA PF05164.8 gi|159041156|ref|YP_001540408.1| - 0.18 11.7 0.3 16 5.5 0.0 2.8 2 1 1 3 3 3 0 Cell division protein ZapA GalP_UDP_transf PF01087.17 gi|159041157|ref|YP_001540409.1| - 1.1e-27 97.2 0.0 5.6e-27 94.9 0.0 2.1 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|159041157|ref|YP_001540409.1| - 1.6e-14 53.8 0.0 2.8e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|159041157|ref|YP_001540409.1| - 6.6e-06 26.3 0.1 4.9e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|159041157|ref|YP_001540409.1| - 9.5e-05 22.8 0.1 0.0048 17.4 0.0 2.3 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.10 gi|159041157|ref|YP_001540409.1| - 0.034 13.7 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 GHMP_kinases_N PF00288.21 gi|159041158|ref|YP_001540410.1| - 1.8e-16 59.9 0.3 1.8e-16 59.9 0.2 2.6 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|159041158|ref|YP_001540410.1| - 8.2e-15 54.7 0.6 4.8e-14 52.3 0.0 2.5 3 0 0 3 3 3 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|159041158|ref|YP_001540410.1| - 1.2e-10 40.4 0.0 1.9e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature PK PF00224.16 gi|159041159|ref|YP_001540411.1| - 1.3e-75 254.2 0.3 1.7e-75 253.8 0.2 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|159041159|ref|YP_001540411.1| - 8.3e-23 80.1 0.0 2.5e-22 78.5 0.0 1.8 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|159041159|ref|YP_001540411.1| - 0.077 11.8 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Fe_dep_repr_C PF02742.10 gi|159041160|ref|YP_001540412.1| - 1.2e-13 50.5 0.0 2.6e-13 49.4 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain TrmB PF01978.14 gi|159041160|ref|YP_001540412.1| - 2.8e-05 23.7 0.0 7.7e-05 22.3 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|159041160|ref|YP_001540412.1| - 3e-05 23.4 0.0 6.3e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|159041160|ref|YP_001540412.1| - 3.8e-05 23.5 0.0 0.0001 22.1 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|159041160|ref|YP_001540412.1| - 0.00013 22.1 0.0 0.00026 21.2 0.0 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|159041160|ref|YP_001540412.1| - 0.00027 20.2 0.0 0.00063 19.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|159041160|ref|YP_001540412.1| - 0.0004 20.0 0.0 0.0014 18.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|159041160|ref|YP_001540412.1| - 0.00079 19.1 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|159041160|ref|YP_001540412.1| - 0.00086 18.9 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family RuvB_C PF05491.8 gi|159041160|ref|YP_001540412.1| - 0.0037 16.8 0.0 0.0091 15.6 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus LexA_DNA_bind PF01726.11 gi|159041160|ref|YP_001540412.1| - 0.0039 16.7 0.0 0.0073 15.8 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.7 gi|159041160|ref|YP_001540412.1| - 0.01 15.4 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.1 gi|159041160|ref|YP_001540412.1| - 0.015 14.8 0.1 0.049 13.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain FeoC PF09012.5 gi|159041160|ref|YP_001540412.1| - 0.043 13.5 0.0 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_20 PF12840.2 gi|159041160|ref|YP_001540412.1| - 0.12 12.2 0.0 0.87 9.4 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HemN_C PF06969.11 gi|159041160|ref|YP_001540412.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain eIF-5_eIF-2B PF01873.12 gi|159041161|ref|YP_001540413.1| - 6.8e-33 112.9 0.0 8e-33 112.7 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.7 gi|159041161|ref|YP_001540413.1| - 0.0014 17.9 1.1 0.0026 17.0 0.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|159041161|ref|YP_001540413.1| - 0.0018 18.1 0.4 0.003 17.4 0.3 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Elf1 PF05129.8 gi|159041161|ref|YP_001540413.1| - 0.0043 16.7 0.1 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|159041161|ref|YP_001540413.1| - 0.0061 16.1 0.2 0.014 15.0 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|159041161|ref|YP_001540413.1| - 0.0067 16.7 0.2 0.011 16.0 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|159041161|ref|YP_001540413.1| - 0.008 15.3 0.5 2.2 7.5 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|159041161|ref|YP_001540413.1| - 0.04 13.6 0.7 0.07 12.9 0.5 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|159041161|ref|YP_001540413.1| - 0.064 13.0 0.5 0.21 11.4 0.3 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|159041161|ref|YP_001540413.1| - 0.07 13.2 0.8 0.33 11.0 0.6 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-NADH-PPase PF09297.6 gi|159041161|ref|YP_001540413.1| - 0.12 11.8 1.0 2 8.0 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|159041161|ref|YP_001540413.1| - 0.61 10.0 2.9 6.3 6.8 2.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain NicO PF03824.11 gi|159041162|ref|YP_001540414.1| - 0.00046 19.5 2.9 0.00046 19.5 2.0 2.3 1 1 1 2 2 2 1 High-affinity nickel-transport protein DUF3329 PF11808.3 gi|159041162|ref|YP_001540414.1| - 1.5 8.9 4.8 0.46 10.5 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3329) DUF3413 PF11893.3 gi|159041162|ref|YP_001540414.1| - 3.1 6.5 11.7 37 3.0 8.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3413) TusA PF01206.12 gi|159041163|ref|YP_001540415.1| - 1.6e-17 62.8 0.0 1.9e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|159041163|ref|YP_001540415.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Meth_synt_2 PF01717.13 gi|159041164|ref|YP_001540416.1| - 2.3e-44 151.7 0.0 8e-43 146.6 0.0 2.6 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|159041164|ref|YP_001540416.1| - 2.2e-12 46.8 0.0 0.00019 20.8 0.0 3.1 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain OsmC PF02566.14 gi|159041165|ref|YP_001540417.1| - 2.7e-18 66.0 0.0 6.1e-18 64.8 0.0 1.5 2 0 0 2 2 2 1 OsmC-like protein Rhodanese PF00581.15 gi|159041166|ref|YP_001540418.1| - 4e-32 110.8 0.0 1.2e-17 64.2 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Thioredox_DsbH PF03190.10 gi|159041167|ref|YP_001540419.1| - 1.9e-57 193.5 0.0 2.9e-57 192.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|159041167|ref|YP_001540419.1| - 5.9e-15 55.0 0.0 1e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|159041167|ref|YP_001540419.1| - 3.1e-05 24.1 0.0 6.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|159041167|ref|YP_001540419.1| - 0.016 14.8 0.1 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin TENA_THI-4 PF03070.11 gi|159041168|ref|YP_001540420.1| - 6e-35 120.9 0.4 8.1e-35 120.4 0.3 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.1 gi|159041168|ref|YP_001540420.1| - 0.00032 20.8 0.1 0.0016 18.5 0.0 2.1 2 0 0 2 2 2 1 Iron-containing redox enzyme zf-met PF12874.2 gi|159041168|ref|YP_001540420.1| - 0.013 15.6 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Zinc-finger of C2H2 type Cas_Cas02710 PF09670.5 gi|159041168|ref|YP_001540420.1| - 0.032 12.8 0.2 0.046 12.3 0.1 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) Ta0938 PF11494.3 gi|159041169|ref|YP_001540421.1| - 1.8e-47 159.7 4.3 2e-47 159.6 3.0 1.0 1 0 0 1 1 1 1 Ta0938 Holin_LLH PF09682.5 gi|159041169|ref|YP_001540421.1| - 0.0035 17.4 0.0 0.0048 17.0 0.0 1.1 1 0 0 1 1 1 1 Phage holin protein (Holin_LLH) zf-H2C2_2 PF13465.1 gi|159041169|ref|YP_001540421.1| - 0.0097 16.1 0.7 0.0097 16.1 0.5 1.8 2 0 0 2 2 2 1 Zinc-finger double domain YHS PF04945.8 gi|159041169|ref|YP_001540421.1| - 0.13 12.1 1.5 0.29 10.9 1.1 1.6 1 0 0 1 1 1 0 YHS domain Rhodanese PF00581.15 gi|159041170|ref|YP_001540422.1| - 8e-41 138.9 0.1 8.9e-22 77.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Hormone_3 PF00159.13 gi|159041170|ref|YP_001540422.1| - 0.26 11.3 1.7 17 5.4 0.0 3.2 3 0 0 3 3 3 0 Pancreatic hormone peptide Urm1 PF09138.6 gi|159041171|ref|YP_001540423.1| - 0.019 15.0 0.1 0.022 14.8 0.1 1.3 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Peptidase_M22 PF00814.20 gi|159041172|ref|YP_001540424.1| - 4.4e-82 275.5 0.2 5.5e-82 275.2 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.14 gi|159041173|ref|YP_001540425.1| - 1.1e-07 31.5 1.0 1.4e-07 31.1 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.6 gi|159041173|ref|YP_001540425.1| - 7e-05 22.4 0.3 8.5e-05 22.1 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|159041173|ref|YP_001540425.1| - 0.00037 20.2 3.4 0.00053 19.7 2.4 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain GFA PF04828.9 gi|159041173|ref|YP_001540425.1| - 0.0021 17.9 1.6 0.37 10.7 0.1 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|159041173|ref|YP_001540425.1| - 0.0039 16.6 1.9 0.2 11.1 0.1 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|159041173|ref|YP_001540425.1| - 0.0063 16.3 0.4 0.0097 15.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|159041173|ref|YP_001540425.1| - 0.0064 16.2 0.3 3.2 7.5 0.0 2.2 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2387 PF09526.5 gi|159041173|ref|YP_001540425.1| - 0.01 15.7 0.3 0.015 15.2 0.2 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|159041173|ref|YP_001540425.1| - 0.018 14.2 1.5 1.4 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|159041173|ref|YP_001540425.1| - 0.018 14.7 0.2 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|159041173|ref|YP_001540425.1| - 0.022 14.0 0.1 0.7 9.2 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.14 gi|159041173|ref|YP_001540425.1| - 0.022 14.5 1.3 0.042 13.6 0.9 1.5 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ISL3 PF14690.1 gi|159041173|ref|YP_001540425.1| - 0.048 13.6 7.0 0.083 12.9 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YhfH PF14149.1 gi|159041173|ref|YP_001540425.1| - 0.054 13.3 0.6 9.9 6.0 0.0 2.2 1 1 1 2 2 2 0 YhfH-like protein RNHCP PF12647.2 gi|159041173|ref|YP_001540425.1| - 0.063 13.1 0.4 0.08 12.7 0.3 1.2 1 0 0 1 1 1 0 RNHCP domain Rubredoxin PF00301.15 gi|159041173|ref|YP_001540425.1| - 0.071 12.9 1.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin Baculo_ME53 PF06061.6 gi|159041173|ref|YP_001540425.1| - 0.083 11.8 0.2 0.08 11.9 0.2 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 DUF1936 PF09151.5 gi|159041173|ref|YP_001540425.1| - 0.086 12.3 1.0 2.1 7.9 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Ribosomal_L37ae PF01780.14 gi|159041173|ref|YP_001540425.1| - 0.15 11.9 0.6 0.22 11.3 0.4 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family Nudix_N_2 PF14803.1 gi|159041173|ref|YP_001540425.1| - 0.18 11.5 3.6 0.71 9.6 2.5 1.9 1 1 0 1 1 1 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|159041173|ref|YP_001540425.1| - 0.26 11.5 3.9 1.1 9.6 3.0 1.7 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain FeS PF04060.8 gi|159041173|ref|YP_001540425.1| - 0.28 10.7 1.6 0.31 10.6 0.1 1.7 2 0 0 2 2 2 0 Putative Fe-S cluster zinc_ribbon_2 PF13240.1 gi|159041173|ref|YP_001540425.1| - 0.48 9.9 5.2 2.9 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|159041173|ref|YP_001540425.1| - 1.5 8.5 5.0 23 4.7 3.5 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid PhoU PF01895.14 gi|159041174|ref|YP_001540426.1| - 2.2e-19 69.6 6.1 1.1e-12 48.2 0.3 2.6 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|159041174|ref|YP_001540426.1| - 2.2e-06 27.2 0.0 7.2e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TOBE PF03459.12 gi|159041174|ref|YP_001540426.1| - 0.025 14.6 0.0 0.19 11.8 0.0 2.5 3 0 0 3 3 3 0 TOBE domain PhoH PF02562.11 gi|159041175|ref|YP_001540427.1| - 4.5e-46 156.6 0.0 5.9e-46 156.3 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.12 gi|159041175|ref|YP_001540427.1| - 1.5e-06 27.6 0.9 5.5e-06 25.8 0.2 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|159041175|ref|YP_001540427.1| - 2.2e-06 27.2 0.2 8.9e-05 22.0 0.1 2.6 2 0 0 2 2 2 1 KH domain KH_5 PF13184.1 gi|159041175|ref|YP_001540427.1| - 6.1e-05 22.7 0.2 0.0033 17.1 0.0 2.6 2 0 0 2 2 2 1 NusA-like KH domain KH_3 PF13014.1 gi|159041175|ref|YP_001540427.1| - 0.0002 20.9 0.4 0.0037 16.8 0.2 2.6 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.1 gi|159041175|ref|YP_001540427.1| - 0.0018 17.9 0.1 1.1 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain DEAD PF00270.24 gi|159041175|ref|YP_001540427.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|159041175|ref|YP_001540427.1| - 0.024 14.0 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|159041175|ref|YP_001540427.1| - 0.076 13.1 0.2 0.37 10.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain CBS PF00571.23 gi|159041176|ref|YP_001540428.1| - 9.1e-29 98.9 3.9 2.3e-14 52.8 0.3 2.2 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|159041176|ref|YP_001540428.1| - 0.097 12.6 1.3 2.8 7.9 0.0 2.7 2 2 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Ribosomal_S13_N PF08069.7 gi|159041177|ref|YP_001540429.1| - 4.5e-24 84.0 0.1 1.1e-23 82.8 0.0 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|159041177|ref|YP_001540429.1| - 7.3e-21 73.7 0.2 1.1e-20 73.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.11 gi|159041177|ref|YP_001540429.1| - 0.06 13.5 0.0 2.7 8.2 0.0 2.1 2 0 0 2 2 2 0 RecX family GAGA PF09237.6 gi|159041177|ref|YP_001540429.1| - 0.11 12.0 0.9 0.27 10.8 0.3 1.8 2 0 0 2 2 2 0 GAGA factor Aldo_ket_red PF00248.16 gi|159041178|ref|YP_001540430.1| - 2.3e-69 233.3 0.0 2.6e-69 233.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MerR_1 PF13411.1 gi|159041178|ref|YP_001540430.1| - 0.23 11.2 3.3 20 5.0 0.2 3.9 4 1 1 5 5 5 0 MerR HTH family regulatory protein SBP_bac_5 PF00496.17 gi|159041179|ref|YP_001540431.1| - 1.8e-27 96.1 10.3 3.4e-27 95.2 7.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041179|ref|YP_001540431.1| - 0.024 14.2 5.9 0.033 13.8 4.1 1.2 1 0 0 1 1 1 0 Rifin/stevor family Regulator_TrmB PF11495.3 gi|159041180|ref|YP_001540432.1| - 7.8e-61 205.0 0.1 1.4e-60 204.1 0.0 1.4 1 1 1 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|159041180|ref|YP_001540432.1| - 2.9e-17 62.1 0.1 8.2e-17 60.6 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|159041180|ref|YP_001540432.1| - 0.00028 20.5 0.0 0.0006 19.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|159041180|ref|YP_001540432.1| - 0.011 15.4 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|159041180|ref|YP_001540432.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|159041180|ref|YP_001540432.1| - 0.021 14.3 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|159041180|ref|YP_001540432.1| - 0.029 14.4 0.0 0.077 13.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|159041180|ref|YP_001540432.1| - 0.045 14.0 0.0 0.093 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|159041180|ref|YP_001540432.1| - 0.062 13.1 0.0 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|159041180|ref|YP_001540432.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_hydro_38C PF07748.8 gi|159041181|ref|YP_001540433.1| - 3.3e-10 39.3 0.1 7.1e-05 21.7 0.1 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 38 C-terminal domain Glyco_hydro_38 PF01074.17 gi|159041181|ref|YP_001540433.1| - 0.0025 17.0 0.0 0.0054 16.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain DUF4361 PF14274.1 gi|159041181|ref|YP_001540433.1| - 0.034 13.7 0.1 0.08 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4361) MEA1 PF06910.6 gi|159041181|ref|YP_001540433.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Male enhanced antigen 1 (MEA1) MFS_1 PF07690.11 gi|159041182|ref|YP_001540434.1| - 1.9e-32 112.3 66.9 8.1e-20 70.8 23.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily CbtA PF09490.5 gi|159041182|ref|YP_001540434.1| - 0.36 10.1 4.2 0.66 9.2 0.6 2.5 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) DUF3834 PF12916.2 gi|159041183|ref|YP_001540435.1| - 1.1e-79 266.1 0.0 1.3e-79 265.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) CCDC155 PF14662.1 gi|159041184|ref|YP_001540436.1| - 2.9e-08 33.5 36.5 9.4e-07 28.6 16.7 2.8 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 DUF948 PF06103.6 gi|159041184|ref|YP_001540436.1| - 3.2e-07 30.1 13.7 0.02 14.7 0.3 3.8 2 1 1 4 4 3 2 Bacterial protein of unknown function (DUF948) DUF972 PF06156.8 gi|159041184|ref|YP_001540436.1| - 9.8e-07 29.0 30.4 0.037 14.3 7.2 3.7 1 1 2 3 3 3 3 Protein of unknown function (DUF972) Reo_sigmaC PF04582.7 gi|159041184|ref|YP_001540436.1| - 3.7e-06 26.3 1.0 0.0034 16.6 1.1 2.2 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|159041184|ref|YP_001540436.1| - 4.7e-06 26.4 12.3 0.00011 22.0 6.0 2.5 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|159041184|ref|YP_001540436.1| - 2.4e-05 24.0 33.5 0.0075 15.8 11.3 2.7 1 1 1 2 2 2 2 IncA protein DivIC PF04977.10 gi|159041184|ref|YP_001540436.1| - 0.00012 21.5 35.9 0.046 13.1 3.2 5.1 1 1 6 7 7 7 3 Septum formation initiator DUF2205 PF10224.4 gi|159041184|ref|YP_001540436.1| - 0.00016 21.1 32.2 0.1 12.1 4.7 5.4 2 1 4 6 6 5 3 Predicted coiled-coil protein (DUF2205) APG6 PF04111.7 gi|159041184|ref|YP_001540436.1| - 0.0002 20.5 39.7 0.0074 15.3 9.5 3.0 1 1 1 2 2 2 1 Autophagy protein Apg6 WEMBL PF05701.6 gi|159041184|ref|YP_001540436.1| - 0.00026 19.5 32.8 0.008 14.6 15.4 2.1 1 1 1 2 2 2 2 Weak chloroplast movement under blue light Seryl_tRNA_N PF02403.17 gi|159041184|ref|YP_001540436.1| - 0.00031 20.7 35.9 0.035 14.1 3.2 3.5 1 1 2 3 3 3 2 Seryl-tRNA synthetase N-terminal domain MAD PF05557.8 gi|159041184|ref|YP_001540436.1| - 0.00048 18.3 28.2 0.00066 17.9 19.5 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein BLOC1_2 PF10046.4 gi|159041184|ref|YP_001540436.1| - 0.00064 19.8 25.5 0.21 11.7 2.6 3.5 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lebercilin PF15619.1 gi|159041184|ref|YP_001540436.1| - 0.0008 18.8 32.5 0.022 14.1 9.8 2.3 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease DUF2353 PF09789.4 gi|159041184|ref|YP_001540436.1| - 0.00088 18.6 23.2 0.0019 17.4 15.4 1.9 1 1 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) TMF_DNA_bd PF12329.3 gi|159041184|ref|YP_001540436.1| - 0.00097 18.9 39.3 0.052 13.3 5.4 3.9 2 1 2 4 4 3 2 TATA element modulatory factor 1 DNA binding Spc7 PF08317.6 gi|159041184|ref|YP_001540436.1| - 0.00099 17.8 30.8 0.026 13.1 9.2 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF1664 PF07889.7 gi|159041184|ref|YP_001540436.1| - 0.0019 18.0 18.5 0.16 11.7 1.4 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|159041184|ref|YP_001540436.1| - 0.0028 17.2 33.9 0.045 13.3 10.0 3.4 1 1 3 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ERM PF00769.14 gi|159041184|ref|YP_001540436.1| - 0.0033 17.0 37.2 0.013 15.0 11.0 2.1 1 1 1 2 2 2 1 Ezrin/radixin/moesin family DUF342 PF03961.8 gi|159041184|ref|YP_001540436.1| - 0.0033 15.8 28.3 0.037 12.4 5.2 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF342) Snapin_Pallidin PF14712.1 gi|159041184|ref|YP_001540436.1| - 0.0035 17.6 26.0 0.057 13.7 2.6 5.0 1 1 5 6 6 5 3 Snapin/Pallidin GAS PF13851.1 gi|159041184|ref|YP_001540436.1| - 0.004 16.3 34.4 0.017 14.3 11.2 2.2 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Myosin_tail_1 PF01576.14 gi|159041184|ref|YP_001540436.1| - 0.0042 14.8 39.4 0.0017 16.1 25.5 1.5 2 0 0 2 2 2 1 Myosin tail AAA_13 PF13166.1 gi|159041184|ref|YP_001540436.1| - 0.0049 15.4 11.8 0.0049 15.4 8.2 2.1 1 1 1 2 2 2 1 AAA domain Filament PF00038.16 gi|159041184|ref|YP_001540436.1| - 0.0052 16.3 28.1 0.085 12.3 18.4 2.2 1 1 0 1 1 1 1 Intermediate filament protein CENP-F_leu_zip PF10473.4 gi|159041184|ref|YP_001540436.1| - 0.0061 16.4 36.2 0.0081 16.0 12.7 2.6 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Taxilin PF09728.4 gi|159041184|ref|YP_001540436.1| - 0.0075 15.3 30.4 0.013 14.6 8.2 2.3 1 1 1 2 2 2 2 Myosin-like coiled-coil protein ATG16 PF08614.6 gi|159041184|ref|YP_001540436.1| - 0.009 15.8 11.4 0.009 15.8 7.9 2.5 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) Laminin_I PF06008.9 gi|159041184|ref|YP_001540436.1| - 0.012 14.9 28.4 0.02 14.2 19.7 1.3 1 0 0 1 1 1 0 Laminin Domain I HOOK PF05622.7 gi|159041184|ref|YP_001540436.1| - 0.012 13.4 27.5 0.021 12.6 19.1 1.3 1 0 0 1 1 1 0 HOOK protein EMP24_GP25L PF01105.19 gi|159041184|ref|YP_001540436.1| - 0.017 14.8 23.9 3.1 7.4 1.4 4.2 1 1 2 3 3 3 0 emp24/gp25L/p24 family/GOLD Transposase_22 PF02994.9 gi|159041184|ref|YP_001540436.1| - 0.017 13.6 29.9 0.39 9.1 6.8 2.2 1 1 1 2 2 2 0 L1 transposable element LOH1CR12 PF10158.4 gi|159041184|ref|YP_001540436.1| - 0.018 14.8 10.5 2.7 7.7 0.6 3.9 1 1 3 4 4 4 0 Tumour suppressor protein Syntaxin PF00804.20 gi|159041184|ref|YP_001540436.1| - 0.019 15.1 5.2 0.019 15.1 3.6 2.9 2 1 1 3 3 2 0 Syntaxin ADIP PF11559.3 gi|159041184|ref|YP_001540436.1| - 0.021 14.7 30.0 0.018 14.9 10.9 2.7 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF2968 PF11180.3 gi|159041184|ref|YP_001540436.1| - 0.023 14.1 28.6 0.053 12.9 2.5 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF2968) EzrA PF06160.7 gi|159041184|ref|YP_001540436.1| - 0.023 12.8 30.2 0.1 10.7 5.3 3.6 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA FUSC PF04632.7 gi|159041184|ref|YP_001540436.1| - 0.026 12.9 2.2 0.035 12.5 1.5 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family Latarcin PF10279.4 gi|159041184|ref|YP_001540436.1| - 0.031 14.4 30.2 0.42 10.8 3.5 4.3 1 1 2 3 3 3 0 Latarcin precursor FlxA PF14282.1 gi|159041184|ref|YP_001540436.1| - 0.038 13.9 26.7 0.027 14.4 8.9 3.2 1 1 2 3 3 3 0 FlxA-like protein HALZ PF02183.13 gi|159041184|ref|YP_001540436.1| - 0.047 13.4 24.1 1.7 8.4 0.5 6.8 3 2 2 6 6 6 0 Homeobox associated leucine zipper COG5 PF10392.4 gi|159041184|ref|YP_001540436.1| - 0.065 13.1 10.1 0.13 12.1 1.9 3.3 1 1 3 4 4 4 0 Golgi transport complex subunit 5 LXG PF04740.7 gi|159041184|ref|YP_001540436.1| - 0.067 12.9 15.4 0.44 10.3 2.7 2.4 1 1 1 2 2 2 0 LXG domain of WXG superfamily zf-C4H2 PF10146.4 gi|159041184|ref|YP_001540436.1| - 0.068 13.1 27.0 0.11 12.4 6.9 2.3 1 1 1 2 2 2 0 Zinc finger-containing protein Cauli_AT PF03233.8 gi|159041184|ref|YP_001540436.1| - 0.081 12.6 19.5 0.096 12.3 3.1 3.2 1 1 2 3 3 3 0 Aphid transmission protein TMF_TATA_bd PF12325.3 gi|159041184|ref|YP_001540436.1| - 0.11 12.2 34.6 0.37 10.5 7.0 3.6 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding NPV_P10 PF05531.7 gi|159041184|ref|YP_001540436.1| - 0.11 12.7 15.1 24 5.2 7.9 4.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein HAP1_N PF04849.8 gi|159041184|ref|YP_001540436.1| - 0.14 11.0 30.0 0.067 12.1 12.8 2.2 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Mod_r PF07200.8 gi|159041184|ref|YP_001540436.1| - 0.25 11.2 28.6 0.17 11.7 8.1 2.6 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein BRE1 PF08647.6 gi|159041184|ref|YP_001540436.1| - 0.26 11.3 25.9 0.13 12.2 6.3 3.6 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase OmpH PF03938.9 gi|159041184|ref|YP_001540436.1| - 0.31 10.9 31.3 0.99 9.3 6.7 2.6 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF3584 PF12128.3 gi|159041184|ref|YP_001540436.1| - 0.33 8.2 31.5 0.31 8.3 11.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF632 PF04782.7 gi|159041184|ref|YP_001540436.1| - 0.48 9.4 23.5 0.92 8.5 6.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF632) Prefoldin_2 PF01920.15 gi|159041184|ref|YP_001540436.1| - 0.51 10.1 37.5 0.36 10.6 4.1 4.8 1 1 4 6 6 6 0 Prefoldin subunit DUF3632 PF12311.3 gi|159041184|ref|YP_001540436.1| - 0.53 10.0 16.8 0.9 9.3 2.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3632) Prominin PF05478.6 gi|159041184|ref|YP_001540436.1| - 0.66 7.4 19.2 1.3 6.4 2.2 2.6 1 1 1 2 2 2 0 Prominin bZIP_1 PF00170.16 gi|159041184|ref|YP_001540436.1| - 0.67 9.9 35.8 0.93 9.4 2.0 5.3 1 1 4 5 5 5 0 bZIP transcription factor Ax_dynein_light PF10211.4 gi|159041184|ref|YP_001540436.1| - 0.7 9.6 33.4 1.7 8.4 5.1 3.8 1 1 4 5 5 5 0 Axonemal dynein light chain DUF2935 PF11155.3 gi|159041184|ref|YP_001540436.1| - 0.72 9.9 12.0 19 5.3 3.9 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) FERM_C PF09380.5 gi|159041184|ref|YP_001540436.1| - 0.73 10.0 4.8 0.75 10.0 0.3 3.0 1 1 1 2 2 2 0 FERM C-terminal PH-like domain NPHI_C PF08469.5 gi|159041184|ref|YP_001540436.1| - 0.8 9.5 5.4 4.8 7.0 1.7 2.3 2 0 0 2 2 2 0 Nucleoside triphosphatase I C-terminal Macoilin PF09726.4 gi|159041184|ref|YP_001540436.1| - 0.91 7.7 26.5 1.8 6.7 18.4 1.4 2 0 0 2 2 1 0 Transmembrane protein Herpes_U30 PF04523.8 gi|159041184|ref|YP_001540436.1| - 0.93 6.8 10.5 0.27 8.6 1.6 2.0 1 1 1 2 2 2 0 Herpes virus tegument protein U30 DASH_Dad3 PF08656.5 gi|159041184|ref|YP_001540436.1| - 0.93 9.2 19.6 52 3.6 0.4 4.7 1 1 3 4 4 4 0 DASH complex subunit Dad3 Nnf1 PF03980.9 gi|159041184|ref|YP_001540436.1| - 0.98 9.4 25.5 0.53 10.3 0.9 5.1 1 1 4 6 6 5 0 Nnf1 DUF4164 PF13747.1 gi|159041184|ref|YP_001540436.1| - 1 9.5 26.9 3.3 7.9 4.2 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) DUF3450 PF11932.3 gi|159041184|ref|YP_001540436.1| - 1.1 8.4 28.0 0.09 12.0 7.8 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DUF1319 PF07028.6 gi|159041184|ref|YP_001540436.1| - 1.1 9.4 25.2 3.7 7.7 3.9 4.0 1 1 3 4 4 3 0 Protein of unknown function (DUF1319) IFT57 PF10498.4 gi|159041184|ref|YP_001540436.1| - 1.2 7.8 25.7 1 8.0 9.8 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Noelin-1 PF12308.3 gi|159041184|ref|YP_001540436.1| - 1.4 8.7 8.0 0.27 11.0 1.3 2.5 2 1 0 2 2 2 0 Neurogenesis glycoprotein Bacillus_HBL PF05791.6 gi|159041184|ref|YP_001540436.1| - 1.4 8.2 20.5 0.43 9.9 4.4 3.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF904 PF06005.7 gi|159041184|ref|YP_001540436.1| - 1.6 9.0 49.9 0.99 9.7 8.3 4.8 2 1 2 4 4 2 0 Protein of unknown function (DUF904) MCPsignal PF00015.16 gi|159041184|ref|YP_001540436.1| - 1.7 8.1 15.8 2 7.9 3.5 2.5 2 1 1 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Rab5-bind PF09311.6 gi|159041184|ref|YP_001540436.1| - 1.8 8.4 31.3 1.4 8.7 7.0 2.6 1 1 2 3 3 3 0 Rabaptin-like protein DUF2422 PF10337.4 gi|159041184|ref|YP_001540436.1| - 2 7.1 4.0 2.3 6.9 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2422) Nup88 PF10168.4 gi|159041184|ref|YP_001540436.1| - 2.2 6.0 27.0 0.46 8.2 12.2 2.0 1 1 1 2 2 2 0 Nuclear pore component Exonuc_VII_L PF02601.10 gi|159041184|ref|YP_001540436.1| - 2.5 7.2 18.1 3.5 6.7 12.6 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit V_ATPase_I PF01496.14 gi|159041184|ref|YP_001540436.1| - 2.5 5.8 27.0 4.4 5.0 9.5 2.4 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family COG2 PF06148.6 gi|159041184|ref|YP_001540436.1| - 2.9 7.7 22.3 2.8 7.8 2.5 4.5 1 1 2 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3138 PF11336.3 gi|159041184|ref|YP_001540436.1| - 3 5.9 5.2 5.9 4.9 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3138) Fib_alpha PF08702.5 gi|159041184|ref|YP_001540436.1| - 3.3 7.8 21.8 0.56 10.3 5.9 2.6 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family Tweety PF04906.8 gi|159041184|ref|YP_001540436.1| - 3.3 6.0 16.1 1.9 6.8 4.3 2.4 1 1 2 3 3 3 0 Tweety Kinesin-relat_1 PF12711.2 gi|159041184|ref|YP_001540436.1| - 3.4 8.1 31.2 9.8 6.6 8.6 4.6 1 1 3 4 4 4 0 Kinesin motor Cep57_CLD_2 PF14197.1 gi|159041184|ref|YP_001540436.1| - 3.5 7.6 33.1 0.12 12.3 5.5 4.5 1 1 3 4 4 4 0 Centrosome localisation domain of PPC89 COG6 PF06419.6 gi|159041184|ref|YP_001540436.1| - 3.6 5.6 22.4 1.5 6.8 2.6 3.0 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 Laminin_II PF06009.7 gi|159041184|ref|YP_001540436.1| - 3.7 7.3 25.5 0.098 12.4 4.5 3.5 2 1 2 4 4 3 0 Laminin Domain II PTRF_SDPR PF15237.1 gi|159041184|ref|YP_001540436.1| - 4.7 6.5 22.2 2.3 7.5 10.0 2.7 1 1 2 3 3 3 0 PTRF/SDPR family Cytochrom_C_2 PF01322.15 gi|159041184|ref|YP_001540436.1| - 4.8 7.7 16.5 0.59 10.6 1.0 3.4 1 1 2 3 3 3 0 Cytochrome C' Toxin_52 PF15605.1 gi|159041184|ref|YP_001540436.1| - 5.3 6.9 15.2 3.2 7.6 2.5 3.4 1 1 2 4 4 2 0 Putative toxin 52 Spectrin PF00435.16 gi|159041184|ref|YP_001540436.1| - 6 7.2 36.0 0.7 10.2 7.9 3.9 1 1 3 4 4 4 0 Spectrin repeat DUF4446 PF14584.1 gi|159041184|ref|YP_001540436.1| - 6.7 6.5 19.3 8.3 6.2 2.6 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) CALCOCO1 PF07888.6 gi|159041184|ref|YP_001540436.1| - 8.1 4.5 30.8 2.1 6.5 9.0 2.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like CASP_C PF08172.7 gi|159041184|ref|YP_001540436.1| - 9.2 5.2 19.4 19 4.1 3.5 3.4 1 1 2 3 3 3 0 CASP C terminal DUF1759 PF03564.10 gi|159041184|ref|YP_001540436.1| - 9.9 5.9 15.5 1.6 8.5 1.9 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1759) GDPD PF03009.12 gi|159041185|ref|YP_001540437.1| - 4.5e-50 170.5 0.2 5.5e-50 170.2 0.1 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|159041185|ref|YP_001540437.1| - 3.4e-06 27.0 0.5 0.00041 20.4 0.3 2.6 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.14 gi|159041185|ref|YP_001540437.1| - 0.037 13.4 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain B5 PF03484.10 gi|159041186|ref|YP_001540438.1| - 1.9e-18 66.0 2.2 1.7e-17 62.9 0.1 3.3 4 0 0 4 4 4 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|159041186|ref|YP_001540438.1| - 1.8e-12 47.1 0.0 3.1e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|159041186|ref|YP_001540438.1| - 0.078 12.1 0.0 0.82 8.8 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|159041187|ref|YP_001540439.1| - 1.9e-74 249.9 0.0 2.5e-74 249.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|159041187|ref|YP_001540439.1| - 0.0063 15.3 0.4 0.62 8.7 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) Radical_SAM PF04055.16 gi|159041188|ref|YP_001540440.1| - 1.4e-24 87.1 0.0 3.1e-24 85.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|159041188|ref|YP_001540440.1| - 5.1e-11 42.8 0.0 1.4e-10 41.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159041188|ref|YP_001540440.1| - 2.2e-09 37.3 0.0 4.1e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|159041188|ref|YP_001540440.1| - 6.3e-08 32.8 0.5 1.3e-07 31.7 0.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AP_endonuc_2 PF01261.19 gi|159041188|ref|YP_001540440.1| - 0.0054 16.0 0.0 0.017 14.4 0.0 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Methyltransf_6 PF03737.10 gi|159041189|ref|YP_001540441.1| - 2.1e-23 82.8 0.7 2.5e-23 82.6 0.5 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase UPRTase PF14681.1 gi|159041190|ref|YP_001540442.1| - 2.8e-53 180.2 0.1 3.4e-53 179.9 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|159041190|ref|YP_001540442.1| - 3.3e-09 36.5 0.7 6.4e-09 35.5 0.5 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|159041190|ref|YP_001540442.1| - 0.11 11.7 0.1 0.18 11.0 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase Pyr_redox_2 PF07992.9 gi|159041191|ref|YP_001540443.1| - 1.1e-21 77.7 0.0 1.6e-21 77.1 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|159041191|ref|YP_001540443.1| - 2.1e-12 47.5 0.0 5.8e-06 26.5 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|159041191|ref|YP_001540443.1| - 1.5e-08 33.9 0.0 0.0017 17.3 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|159041191|ref|YP_001540443.1| - 3.7e-08 33.2 0.2 7.5e-07 29.0 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|159041191|ref|YP_001540443.1| - 3.8e-07 30.4 1.8 0.012 15.9 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|159041191|ref|YP_001540443.1| - 2.8e-05 23.1 0.6 0.13 11.1 0.0 3.5 3 1 1 4 4 4 1 FAD binding domain HI0933_like PF03486.9 gi|159041191|ref|YP_001540443.1| - 0.00014 20.4 0.4 0.00047 18.7 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|159041191|ref|YP_001540443.1| - 0.002 17.7 0.2 0.098 12.2 0.0 2.5 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|159041191|ref|YP_001540443.1| - 0.0034 16.5 0.3 0.0063 15.6 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|159041191|ref|YP_001540443.1| - 0.0055 16.4 0.1 0.016 14.9 0.0 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|159041191|ref|YP_001540443.1| - 0.011 15.3 0.8 0.03 13.9 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|159041191|ref|YP_001540443.1| - 0.014 14.4 0.1 0.029 13.4 0.0 1.4 1 0 0 1 1 1 0 Thi4 family Shikimate_DH PF01488.15 gi|159041191|ref|YP_001540443.1| - 0.024 14.7 0.1 6.1 6.9 0.0 2.7 3 0 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|159041191|ref|YP_001540443.1| - 0.033 13.0 3.5 1.4 7.7 0.4 3.1 2 1 1 3 3 3 0 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|159041191|ref|YP_001540443.1| - 0.11 11.5 0.1 2 7.3 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Lysine_decarbox PF03641.9 gi|159041192|ref|YP_001540444.1| - 8.9e-06 25.5 0.0 1.5e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|159041192|ref|YP_001540444.1| - 0.0094 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF373 PF04123.8 gi|159041193|ref|YP_001540445.1| - 5.8e-75 252.4 15.5 8e-75 252.0 10.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Methyltransf_26 PF13659.1 gi|159041194|ref|YP_001540446.1| - 3.6e-10 39.9 0.0 1.1e-08 35.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|159041194|ref|YP_001540446.1| - 7e-10 38.7 0.0 0.00011 21.8 0.0 2.2 1 1 1 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|159041194|ref|YP_001540446.1| - 1.9e-08 34.0 0.0 0.0005 19.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase AAA_13 PF13166.1 gi|159041195|ref|YP_001540447.1| - 2.3e-07 29.7 6.2 3.7e-07 29.0 4.3 1.3 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|159041195|ref|YP_001540447.1| - 1.8e-06 27.8 5.7 0.0035 17.1 2.7 2.9 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Transcrip_act PF04949.8 gi|159041195|ref|YP_001540447.1| - 3.8e-06 26.6 16.4 0.0027 17.3 0.7 3.2 1 1 2 3 3 3 3 Transcriptional activator HSBP1 PF06825.7 gi|159041195|ref|YP_001540447.1| - 2.4e-05 23.8 30.3 0.031 13.8 0.9 6.3 1 1 3 4 4 4 2 Heat shock factor binding protein 1 Mer2 PF09074.5 gi|159041195|ref|YP_001540447.1| - 4.4e-05 23.4 6.6 0.0011 18.9 1.8 2.3 1 1 1 2 2 2 1 Mer2 adh_short_C2 PF13561.1 gi|159041195|ref|YP_001540447.1| - 0.00014 21.7 2.3 0.0015 18.3 0.8 2.1 1 1 1 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Tropomyosin_1 PF12718.2 gi|159041195|ref|YP_001540447.1| - 0.00016 21.5 0.8 0.015 15.1 1.3 2.3 1 1 1 2 2 2 1 Tropomyosin like DUF2884 PF11101.3 gi|159041195|ref|YP_001540447.1| - 0.00016 21.1 2.5 0.088 12.1 0.3 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2884) NPV_P10 PF05531.7 gi|159041195|ref|YP_001540447.1| - 0.00019 21.6 8.8 0.8 10.0 2.8 4.3 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein KH_5 PF13184.1 gi|159041195|ref|YP_001540447.1| - 0.00025 20.7 12.5 0.0081 15.9 0.4 3.9 2 1 2 4 4 4 2 NusA-like KH domain FliD_C PF07195.7 gi|159041195|ref|YP_001540447.1| - 0.0005 19.4 7.0 0.12 11.6 1.5 3.5 1 1 3 4 4 4 1 Flagellar hook-associated protein 2 C-terminus Apolipoprotein PF01442.13 gi|159041195|ref|YP_001540447.1| - 0.00059 19.4 0.4 0.0026 17.3 0.3 2.0 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain TMF_TATA_bd PF12325.3 gi|159041195|ref|YP_001540447.1| - 0.00068 19.3 0.9 0.9 9.2 0.1 3.0 1 1 1 3 3 3 1 TATA element modulatory factor 1 TATA binding DUF3422 PF11902.3 gi|159041195|ref|YP_001540447.1| - 0.0008 18.3 1.4 0.15 10.9 1.0 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF3422) MCPsignal PF00015.16 gi|159041195|ref|YP_001540447.1| - 0.00099 18.7 3.5 0.15 11.5 0.2 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Matrilin_ccoil PF10393.4 gi|159041195|ref|YP_001540447.1| - 0.0011 18.2 7.2 28 4.1 0.0 7.0 2 1 7 9 9 9 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF4164 PF13747.1 gi|159041195|ref|YP_001540447.1| - 0.0011 19.0 14.2 0.26 11.4 2.1 3.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4164) APG17 PF04108.7 gi|159041195|ref|YP_001540447.1| - 0.0011 17.7 1.2 0.034 12.9 0.5 2.1 1 1 1 2 2 2 1 Autophagy protein Apg17 MtrG PF04210.8 gi|159041195|ref|YP_001540447.1| - 0.0014 18.2 17.0 2.6 7.7 0.1 5.9 1 1 5 6 6 6 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF1664 PF07889.7 gi|159041195|ref|YP_001540447.1| - 0.0016 18.2 14.0 0.071 12.9 1.5 3.9 1 1 3 4 4 4 1 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|159041195|ref|YP_001540447.1| - 0.002 17.9 3.1 0.7 9.7 0.6 3.5 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) Spectrin PF00435.16 gi|159041195|ref|YP_001540447.1| - 0.002 18.4 0.6 1 9.6 0.0 2.9 1 1 0 2 2 2 1 Spectrin repeat RmuC PF02646.11 gi|159041195|ref|YP_001540447.1| - 0.0033 16.3 1.6 0.27 10.0 0.2 2.8 1 1 2 3 3 3 1 RmuC family Flagellin_C PF00700.16 gi|159041195|ref|YP_001540447.1| - 0.0034 17.4 8.5 0.75 10.0 0.5 3.8 2 1 1 4 4 4 1 Bacterial flagellin C-terminal helical region DUF16 PF01519.11 gi|159041195|ref|YP_001540447.1| - 0.0046 17.1 7.4 3.2 8.0 5.1 3.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 Prefoldin_3 PF13758.1 gi|159041195|ref|YP_001540447.1| - 0.0064 16.2 17.9 3 7.6 1.9 5.7 1 1 3 4 4 4 0 Prefoldin subunit HrpB7 PF09486.5 gi|159041195|ref|YP_001540447.1| - 0.012 15.5 5.4 0.061 13.2 1.6 2.8 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) PDDEXK_1 PF12705.2 gi|159041195|ref|YP_001540447.1| - 0.012 14.9 1.3 0.02 14.2 0.9 1.4 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Nup54 PF13874.1 gi|159041195|ref|YP_001540447.1| - 0.013 15.1 2.0 0.19 11.3 0.5 2.5 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 ApoLp-III PF07464.6 gi|159041195|ref|YP_001540447.1| - 0.015 15.3 4.6 0.054 13.5 0.8 2.7 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Syntaxin PF00804.20 gi|159041195|ref|YP_001540447.1| - 0.015 15.4 12.7 1.9 8.6 0.9 3.2 1 1 1 2 2 2 0 Syntaxin DUF4455 PF14643.1 gi|159041195|ref|YP_001540447.1| - 0.016 13.8 3.3 1.4 7.4 0.3 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4455) Prominin PF05478.6 gi|159041195|ref|YP_001540447.1| - 0.021 12.3 2.1 0.035 11.6 1.5 1.4 1 1 0 1 1 1 0 Prominin Phasin PF05597.6 gi|159041195|ref|YP_001540447.1| - 0.022 14.5 7.3 2.2 8.0 0.7 3.3 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) V-SNARE_C PF12352.3 gi|159041195|ref|YP_001540447.1| - 0.024 14.7 6.6 6.3 6.9 0.1 4.2 3 2 2 5 5 5 0 Snare region anchored in the vesicle membrane C-terminus Ran-binding PF05508.6 gi|159041195|ref|YP_001540447.1| - 0.028 13.3 9.8 0.36 9.6 3.2 2.2 1 1 1 2 2 2 0 RanGTP-binding protein YicC_N PF03755.8 gi|159041195|ref|YP_001540447.1| - 0.029 14.2 0.8 36 4.2 0.0 3.0 1 1 2 3 3 3 0 YicC-like family, N-terminal region SF-assemblin PF06705.6 gi|159041195|ref|YP_001540447.1| - 0.032 13.3 15.1 0.66 9.0 9.7 2.4 1 1 1 2 2 2 0 SF-assemblin/beta giardin V_ATPase_I PF01496.14 gi|159041195|ref|YP_001540447.1| - 0.033 12.0 2.2 0.063 11.1 1.4 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family GCN5L1 PF06320.8 gi|159041195|ref|YP_001540447.1| - 0.034 13.9 4.8 0.44 10.3 1.0 2.9 1 1 2 3 3 3 0 GCN5-like protein 1 (GCN5L1) Snapin_Pallidin PF14712.1 gi|159041195|ref|YP_001540447.1| - 0.037 14.3 4.2 2.5 8.4 1.2 3.0 1 1 1 2 2 2 0 Snapin/Pallidin ACCA PF03255.9 gi|159041195|ref|YP_001540447.1| - 0.043 13.3 5.3 0.095 12.2 1.1 2.7 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF4407 PF14362.1 gi|159041195|ref|YP_001540447.1| - 0.048 12.6 0.8 2.8 6.8 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Laminin_I PF06008.9 gi|159041195|ref|YP_001540447.1| - 0.051 12.8 4.6 1.4 8.1 1.5 2.9 1 1 0 2 2 2 0 Laminin Domain I DUF2130 PF09903.4 gi|159041195|ref|YP_001540447.1| - 0.056 12.1 10.1 0.31 9.7 3.6 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Phage_GPO PF05929.6 gi|159041195|ref|YP_001540447.1| - 0.07 12.3 1.0 2.3 7.3 0.4 2.4 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Spc7 PF08317.6 gi|159041195|ref|YP_001540447.1| - 0.073 11.7 4.5 0.092 11.3 2.4 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF746 PF05344.6 gi|159041195|ref|YP_001540447.1| - 0.075 12.5 0.1 8.9 5.9 0.0 3.1 3 1 0 3 3 3 0 Domain of Unknown Function (DUF746) YkyA PF10368.4 gi|159041195|ref|YP_001540447.1| - 0.08 12.2 3.3 0.11 11.7 1.5 1.9 2 1 0 2 2 1 0 Putative cell-wall binding lipoprotein DUF4041 PF13250.1 gi|159041195|ref|YP_001540447.1| - 0.09 12.3 10.0 4.5 6.9 0.0 4.7 1 1 3 5 5 5 0 Domain of unknown function (DUF4041) DUF4200 PF13863.1 gi|159041195|ref|YP_001540447.1| - 0.11 12.4 4.0 4 7.4 2.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF4559 PF15112.1 gi|159041195|ref|YP_001540447.1| - 0.12 11.5 4.1 0.18 10.9 2.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Toxin_trans PF07952.7 gi|159041195|ref|YP_001540447.1| - 0.13 11.1 6.8 0.4 9.5 3.7 2.0 1 1 1 2 2 2 0 Clostridium neurotoxin, Translocation domain DUF2959 PF11172.3 gi|159041195|ref|YP_001540447.1| - 0.14 11.8 5.2 0.24 11.1 2.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) PLC-beta_C PF08703.5 gi|159041195|ref|YP_001540447.1| - 0.14 11.8 4.5 0.74 9.4 0.9 2.4 1 1 1 2 2 2 0 PLC-beta C terminal DUF3235 PF11574.3 gi|159041195|ref|YP_001540447.1| - 0.16 12.2 0.0 2.5 8.3 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3235) MitMem_reg PF13012.1 gi|159041195|ref|YP_001540447.1| - 0.17 11.9 2.2 1.8 8.6 1.4 2.5 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function Corona_S2 PF01601.11 gi|159041195|ref|YP_001540447.1| - 0.18 9.8 4.8 0.64 8.0 0.4 2.0 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein DUF4446 PF14584.1 gi|159041195|ref|YP_001540447.1| - 0.2 11.4 5.0 1.4 8.7 0.9 2.9 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) HalX PF08663.5 gi|159041195|ref|YP_001540447.1| - 0.21 11.5 11.5 18 5.4 0.8 5.2 3 2 2 5 5 5 0 HalX domain Fib_alpha PF08702.5 gi|159041195|ref|YP_001540447.1| - 0.23 11.5 7.2 0.94 9.5 1.9 2.6 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Fzo_mitofusin PF04799.8 gi|159041195|ref|YP_001540447.1| - 0.31 10.4 1.8 12 5.1 0.9 2.8 1 1 0 1 1 1 0 fzo-like conserved region SLAM PF06214.6 gi|159041195|ref|YP_001540447.1| - 0.5 10.3 4.3 1.3 8.9 0.4 2.7 1 1 2 3 3 3 0 Signaling lymphocytic activation molecule (SLAM) protein PMC2NT PF08066.7 gi|159041195|ref|YP_001540447.1| - 0.55 10.5 8.8 5.1 7.4 1.8 2.9 1 1 0 2 2 2 0 PMC2NT (NUC016) domain Bacillus_HBL PF05791.6 gi|159041195|ref|YP_001540447.1| - 0.55 9.5 6.1 0.75 9.1 2.9 2.0 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Allexi_40kDa PF05549.6 gi|159041195|ref|YP_001540447.1| - 0.75 9.0 3.9 6.5 5.9 0.2 2.1 1 1 2 3 3 3 0 Allexivirus 40kDa protein KID PF02524.9 gi|159041195|ref|YP_001540447.1| - 0.8 10.0 6.1 3.4 8.1 0.1 4.9 4 0 0 4 4 2 0 KID repeat TMCO5 PF14992.1 gi|159041195|ref|YP_001540447.1| - 0.89 8.6 7.4 0.31 10.1 2.4 1.9 1 1 1 2 2 2 0 TMCO5 family COG5 PF10392.4 gi|159041195|ref|YP_001540447.1| - 0.9 9.4 5.4 1.7 8.5 1.6 2.5 1 1 0 2 2 2 0 Golgi transport complex subunit 5 DUF4577 PF15145.1 gi|159041195|ref|YP_001540447.1| - 1.5 8.7 14.0 3.6 7.5 0.4 3.3 1 1 1 3 3 3 0 Domain of unknown function (DUF4577) Erythro-docking PF09277.6 gi|159041195|ref|YP_001540447.1| - 2 8.1 7.8 49 3.7 0.3 4.5 3 2 0 3 3 3 0 Erythronolide synthase, docking ISG65-75 PF11727.3 gi|159041195|ref|YP_001540447.1| - 2.2 7.2 8.3 5 6.0 2.4 2.4 1 1 2 3 3 3 0 Invariant surface glycoprotein Hemagglutinin PF00509.13 gi|159041195|ref|YP_001540447.1| - 2.4 6.1 13.1 2.8 5.9 1.2 2.8 1 1 2 3 3 3 0 Haemagglutinin DASH_Dad1 PF08649.5 gi|159041195|ref|YP_001540447.1| - 3 7.6 7.0 8.1 6.2 0.5 3.9 3 2 2 5 5 3 0 DASH complex subunit Dad1 DUF2762 PF10960.3 gi|159041195|ref|YP_001540447.1| - 5.2 6.8 8.2 1.4 8.6 0.9 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2762) Phage_Gp19 PF09355.5 gi|159041195|ref|YP_001540447.1| - 5.6 6.8 7.4 10 5.9 0.1 3.4 1 1 1 3 3 3 0 Phage protein Gp19/Gp15/Gp42 CorA PF01544.13 gi|159041195|ref|YP_001540447.1| - 6.3 5.7 12.0 5.8 5.8 6.1 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Phage_Mu_Gam PF07352.7 gi|159041195|ref|YP_001540447.1| - 7.6 6.0 8.6 81 2.7 3.5 3.3 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein MAPKK1_Int PF08923.5 gi|159041196|ref|YP_001540448.1| - 0.00011 21.8 0.4 0.00014 21.4 0.3 1.2 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Robl_LC7 PF03259.12 gi|159041196|ref|YP_001540448.1| - 0.00018 20.9 0.1 0.00024 20.5 0.1 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain Glycos_transf_2 PF00535.21 gi|159041198|ref|YP_001540450.1| - 1.6e-31 109.3 0.0 2.2e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|159041198|ref|YP_001540450.1| - 4.3e-22 78.2 15.0 8.2e-22 77.3 10.2 1.6 2 0 0 2 2 2 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|159041198|ref|YP_001540450.1| - 3.1e-14 53.3 0.0 4.8e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|159041198|ref|YP_001540450.1| - 0.014 14.4 0.0 0.019 14.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Helicase_C_2 PF13307.1 gi|159041199|ref|YP_001540451.1| - 2.1e-29 102.6 0.0 4e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|159041199|ref|YP_001540451.1| - 3.1e-25 88.5 0.1 4.8e-25 87.9 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|159041199|ref|YP_001540451.1| - 6.8e-07 28.9 0.0 8.5e-05 22.1 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|159041199|ref|YP_001540451.1| - 0.00078 19.5 0.2 2.8 8.1 0.0 3.0 2 1 1 3 3 3 2 AAA domain ResIII PF04851.10 gi|159041199|ref|YP_001540451.1| - 0.001 18.9 0.0 0.1 12.4 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|159041199|ref|YP_001540451.1| - 0.0014 18.3 0.1 0.0046 16.6 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|159041199|ref|YP_001540451.1| - 0.003 16.8 0.6 0.086 12.0 0.0 2.6 3 0 0 3 3 3 1 PhoH-like protein AAA_25 PF13481.1 gi|159041199|ref|YP_001540451.1| - 0.012 14.9 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTP_transf_3 PF12804.2 gi|159041200|ref|YP_001540452.1| - 0.0076 16.3 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Nitro_FeMo-Co PF02579.12 gi|159041201|ref|YP_001540453.1| - 0.00013 21.9 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor PBP_like PF12727.2 gi|159041202|ref|YP_001540454.1| - 1e-32 112.6 0.0 1.5e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.22 gi|159041202|ref|YP_001540454.1| - 2.4e-07 30.3 0.0 4.5e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family NUMOD1 PF07453.8 gi|159041202|ref|YP_001540454.1| - 0.002 17.9 0.1 0.0049 16.6 0.1 1.7 1 0 0 1 1 1 1 NUMOD1 domain HTH_29 PF13551.1 gi|159041202|ref|YP_001540454.1| - 0.0032 17.5 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|159041202|ref|YP_001540454.1| - 0.0035 16.9 0.1 0.015 14.9 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain Phosphonate-bd PF12974.2 gi|159041202|ref|YP_001540454.1| - 0.0092 15.3 0.0 0.015 14.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HTH_28 PF13518.1 gi|159041202|ref|YP_001540454.1| - 0.014 15.4 0.1 0.061 13.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF134 PF02001.11 gi|159041202|ref|YP_001540454.1| - 0.018 14.9 0.0 0.36 10.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF134 HTH_psq PF05225.11 gi|159041202|ref|YP_001540454.1| - 0.061 12.8 0.0 0.17 11.4 0.0 1.8 1 0 0 1 1 1 0 helix-turn-helix, Psq domain CBS PF00571.23 gi|159041203|ref|YP_001540455.1| - 4.5e-24 83.9 6.8 1.5e-12 47.1 0.2 2.1 2 0 0 2 2 2 2 CBS domain LacAB_rpiB PF02502.13 gi|159041203|ref|YP_001540455.1| - 0.0058 16.2 0.1 0.0088 15.6 0.1 1.2 1 0 0 1 1 1 1 Ribose/Galactose Isomerase Arch_ATPase PF01637.13 gi|159041203|ref|YP_001540455.1| - 0.061 13.0 0.6 0.11 12.1 0.5 1.5 1 1 1 2 2 2 0 Archaeal ATPase IF3_N PF05198.11 gi|159041203|ref|YP_001540455.1| - 0.1 12.5 2.9 7.3 6.5 0.1 3.1 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain MGS PF02142.17 gi|159041203|ref|YP_001540455.1| - 0.15 12.0 1.5 0.5 10.3 0.1 2.0 2 0 0 2 2 2 0 MGS-like domain EMG1 PF03587.9 gi|159041204|ref|YP_001540456.1| - 1.2e-44 152.1 0.0 1.3e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase SPOUT_MTase_2 PF14419.1 gi|159041204|ref|YP_001540456.1| - 0.02 14.1 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP SPOUT_MTase PF02590.12 gi|159041204|ref|YP_001540456.1| - 0.056 13.1 0.1 0.089 12.5 0.1 1.3 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase HrcA_DNA-bdg PF03444.10 gi|159041204|ref|YP_001540456.1| - 0.11 11.9 0.1 0.23 10.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sterol_MT_C PF08498.5 gi|159041204|ref|YP_001540456.1| - 0.12 12.3 0.1 0.31 11.0 0.1 1.7 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal Aconitase PF00330.15 gi|159041205|ref|YP_001540457.1| - 9.9e-137 456.1 0.0 1.4e-136 455.7 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|159041205|ref|YP_001540457.1| - 1e-39 135.6 0.0 1.6e-39 134.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain YwiC PF14256.1 gi|159041206|ref|YP_001540458.1| - 0.015 15.4 8.7 0.015 15.4 6.0 2.9 1 1 1 2 2 2 0 YwiC-like protein RimK PF08443.6 gi|159041207|ref|YP_001540459.1| - 6.1e-41 139.9 0.0 9.8e-41 139.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041207|ref|YP_001540459.1| - 1.6e-14 54.0 0.0 4.7e-14 52.5 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|159041207|ref|YP_001540459.1| - 2.4e-13 49.5 0.0 3.6e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159041207|ref|YP_001540459.1| - 7.9e-10 38.8 0.0 1.6e-09 37.8 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|159041207|ref|YP_001540459.1| - 9.7e-07 27.8 0.0 6.7e-06 25.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|159041207|ref|YP_001540459.1| - 0.013 14.6 0.1 0.35 9.9 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp DUF4343 PF14243.1 gi|159041207|ref|YP_001540459.1| - 0.077 12.8 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4343) AA_kinase PF00696.23 gi|159041208|ref|YP_001540460.1| - 8.3e-24 84.4 0.3 9.8e-24 84.2 0.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Flu_M1_C PF08289.6 gi|159041209|ref|YP_001540461.1| - 0.13 12.2 0.0 0.78 9.7 0.0 1.9 2 0 0 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain Cob_adeno_trans PF01923.13 gi|159041211|ref|YP_001540463.1| - 1.4e-05 24.9 0.0 1.9e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase CagA PF03507.8 gi|159041211|ref|YP_001540463.1| - 0.085 12.7 0.0 0.34 10.7 0.0 1.8 2 0 0 2 2 2 0 CagA exotoxin Pox_A51 PF04948.8 gi|159041211|ref|YP_001540463.1| - 0.11 11.1 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A51 protein Helicase_RecD PF05127.9 gi|159041212|ref|YP_001540464.1| - 1.5e-55 187.5 0.0 2.5e-55 186.8 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|159041212|ref|YP_001540464.1| - 8.7e-51 172.0 0.0 5.2e-50 169.4 0.0 2.1 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|159041212|ref|YP_001540464.1| - 2.2e-24 84.9 0.0 5e-24 83.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|159041212|ref|YP_001540464.1| - 6.9e-08 32.5 0.0 5.5e-06 26.4 0.0 2.5 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|159041212|ref|YP_001540464.1| - 3.1e-06 27.2 0.0 1.3e-05 25.2 0.0 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|159041212|ref|YP_001540464.1| - 5.7e-06 26.2 0.2 3.6e-05 23.6 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Phage-MuB_C PF09077.6 gi|159041214|ref|YP_001540466.1| - 0.0064 16.1 0.9 2.3 7.9 0.0 2.7 2 1 0 2 2 2 2 Mu B transposition protein, C terminal DUF2400 PF09674.5 gi|159041214|ref|YP_001540466.1| - 0.023 14.4 0.6 0.041 13.5 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2400) polyprenyl_synt PF00348.12 gi|159041215|ref|YP_001540467.1| - 1.3e-51 174.9 0.0 1.8e-51 174.5 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase YkyA PF10368.4 gi|159041215|ref|YP_001540467.1| - 0.08 12.2 2.9 0.14 11.5 2.0 1.3 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein Methyltransf_11 PF08241.7 gi|159041216|ref|YP_001540468.1| - 4.6e-06 27.0 0.0 6.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041216|ref|YP_001540468.1| - 0.00053 19.5 0.0 0.00087 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041216|ref|YP_001540468.1| - 0.0061 16.9 0.0 0.0086 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|159041216|ref|YP_001540468.1| - 0.049 13.1 0.1 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|159041216|ref|YP_001540468.1| - 0.056 13.1 0.0 0.067 12.9 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Ribonuc_red_lgC PF02867.10 gi|159041217|ref|YP_001540469.1| - 5.6e-143 477.3 0.0 7.1e-143 477.0 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|159041217|ref|YP_001540469.1| - 2.4e-27 94.5 0.5 3.6e-26 90.7 0.0 2.5 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|159041217|ref|YP_001540469.1| - 6.4e-08 32.9 0.0 1.7e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 ATP cone domain Tachykinin PF02202.11 gi|159041217|ref|YP_001540469.1| - 0.16 11.7 0.1 0.37 10.5 0.0 1.7 1 0 0 1 1 1 0 Tachykinin family PFK PF00365.15 gi|159041220|ref|YP_001540472.1| - 4.4e-67 225.9 0.4 6.2e-67 225.5 0.3 1.2 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.16 gi|159041220|ref|YP_001540472.1| - 0.00048 18.9 0.1 0.00073 18.3 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase Aminotran_1_2 PF00155.16 gi|159041221|ref|YP_001540473.1| - 1.1e-54 185.8 0.0 1.3e-54 185.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|159041221|ref|YP_001540473.1| - 8.4e-10 37.4 0.0 1.3e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|159041221|ref|YP_001540473.1| - 1.5e-06 27.5 0.0 2.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|159041221|ref|YP_001540473.1| - 1.2e-05 24.2 0.0 2e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.2 gi|159041221|ref|YP_001540473.1| - 0.00026 19.6 0.0 0.00085 17.9 0.0 1.8 1 1 1 2 2 2 1 Alanine-glyoxylate amino-transferase RNase_Zc3h12a PF11977.3 gi|159041221|ref|YP_001540473.1| - 0.0021 17.9 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain Elf1 PF05129.8 gi|159041222|ref|YP_001540474.1| - 0.00052 19.6 0.1 0.00061 19.4 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|159041222|ref|YP_001540474.1| - 0.00084 19.5 0.1 0.001 19.3 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-H2C2_2 PF13465.1 gi|159041222|ref|YP_001540474.1| - 0.0035 17.5 0.3 0.13 12.6 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|159041222|ref|YP_001540474.1| - 0.0072 15.5 2.6 0.067 12.4 1.8 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DUF1936 PF09151.5 gi|159041222|ref|YP_001540474.1| - 0.0081 15.6 0.5 1.7 8.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1936) zf-CSL PF05207.8 gi|159041222|ref|YP_001540474.1| - 0.0099 15.3 0.6 0.09 12.2 0.6 1.9 1 1 1 2 2 2 2 CSL zinc finger zf-HIT PF04438.11 gi|159041222|ref|YP_001540474.1| - 0.018 14.6 2.6 1 9.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|159041222|ref|YP_001540474.1| - 0.019 14.6 1.5 1.8 8.2 1.6 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|159041222|ref|YP_001540474.1| - 0.02 14.3 6.9 0.14 11.6 1.9 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|159041222|ref|YP_001540474.1| - 0.021 14.8 0.9 3.3 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-DNA_Pol PF08996.5 gi|159041222|ref|YP_001540474.1| - 0.028 13.7 0.1 0.032 13.5 0.1 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zinc_ribbon_2 PF13240.1 gi|159041222|ref|YP_001540474.1| - 0.029 13.8 2.7 0.3 10.6 1.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|159041222|ref|YP_001540474.1| - 0.031 13.4 0.3 0.044 12.9 0.2 1.3 1 1 0 1 1 1 0 ZPR1 zinc-finger domain RecR PF02132.10 gi|159041222|ref|YP_001540474.1| - 0.035 13.5 1.0 2.5 7.5 0.0 2.1 2 0 0 2 2 2 0 RecR protein Desulfoferrod_N PF06397.7 gi|159041222|ref|YP_001540474.1| - 0.035 13.5 2.7 0.3 10.5 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_5 PF13719.1 gi|159041222|ref|YP_001540474.1| - 0.043 13.4 2.3 4 7.1 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|159041222|ref|YP_001540474.1| - 0.049 13.4 2.1 1.5 8.7 0.1 2.2 1 1 1 2 2 2 0 Putative zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|159041222|ref|YP_001540474.1| - 0.051 13.2 2.0 5.5 6.7 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|159041222|ref|YP_001540474.1| - 0.059 13.6 4.4 0.43 10.8 3.1 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|159041222|ref|YP_001540474.1| - 0.061 13.2 0.1 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 IBR domain DZR PF12773.2 gi|159041222|ref|YP_001540474.1| - 0.088 12.6 1.0 3.1 7.6 1.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon DUF678 PF05077.7 gi|159041222|ref|YP_001540474.1| - 0.092 12.7 0.2 0.17 11.9 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF678) DUF3797 PF12677.2 gi|159041222|ref|YP_001540474.1| - 0.092 12.3 0.4 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) DUF1610 PF07754.6 gi|159041222|ref|YP_001540474.1| - 0.12 12.5 5.4 0.31 11.1 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|159041222|ref|YP_001540474.1| - 0.12 12.3 3.0 5 7.1 2.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|159041222|ref|YP_001540474.1| - 0.13 12.7 1.1 6.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|159041222|ref|YP_001540474.1| - 0.19 11.4 2.1 1.2 8.9 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Sec23_Sec24 PF04810.10 gi|159041222|ref|YP_001540474.1| - 0.21 11.1 2.1 20 4.8 1.3 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-tcix PF14952.1 gi|159041222|ref|YP_001540474.1| - 0.22 10.9 2.7 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TFIIS_C PF01096.13 gi|159041222|ref|YP_001540474.1| - 0.25 11.0 1.2 8.6 6.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.1 gi|159041222|ref|YP_001540474.1| - 0.39 10.5 1.5 3.9 7.4 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L37e PF01907.14 gi|159041222|ref|YP_001540474.1| - 0.61 9.9 3.1 5.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e Zn_Tnp_IS1595 PF12760.2 gi|159041222|ref|YP_001540474.1| - 0.99 9.2 4.8 6.4 6.6 3.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|159041222|ref|YP_001540474.1| - 1.6 8.0 4.1 1.5 8.1 0.1 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|159041222|ref|YP_001540474.1| - 4.5 7.3 6.5 99 3.0 4.6 2.3 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 AAA_10 PF12846.2 gi|159041223|ref|YP_001540475.1| - 1.4e-19 70.6 0.0 1.7e-08 34.2 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|159041223|ref|YP_001540475.1| - 1.8e-17 63.9 0.0 3.1e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|159041223|ref|YP_001540475.1| - 8.9e-09 35.1 0.0 2.4e-08 33.7 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|159041223|ref|YP_001540475.1| - 6.6e-06 26.2 0.1 0.01 15.9 0.0 3.1 3 0 0 3 3 3 2 AAA domain TrwB_AAD_bind PF10412.4 gi|159041223|ref|YP_001540475.1| - 9.4e-06 24.4 0.0 1.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|159041223|ref|YP_001540475.1| - 0.00011 21.2 0.0 0.00019 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|159041223|ref|YP_001540475.1| - 0.0078 15.6 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|159041223|ref|YP_001540475.1| - 0.0086 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF2710 PF10921.3 gi|159041223|ref|YP_001540475.1| - 0.034 14.2 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) AAA_16 PF13191.1 gi|159041223|ref|YP_001540475.1| - 0.038 13.9 0.0 0.098 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|159041223|ref|YP_001540475.1| - 0.13 11.1 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF853 PF05872.7 gi|159041223|ref|YP_001540475.1| - 0.16 10.3 0.0 3.1 6.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) E2F_TDP PF02319.15 gi|159041224|ref|YP_001540476.1| - 0.11 12.1 0.2 0.37 10.3 0.0 2.0 2 1 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain CbiA PF01656.18 gi|159041226|ref|YP_001540478.1| - 2.3e-10 40.2 0.0 4.1e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Orthopox_A49R PF06489.6 gi|159041226|ref|YP_001540478.1| - 0.036 14.0 0.2 0.049 13.6 0.1 1.3 1 0 0 1 1 1 0 Orthopoxvirus A49R protein AAA_31 PF13614.1 gi|159041226|ref|YP_001540478.1| - 0.091 12.6 0.0 0.49 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|159041226|ref|YP_001540478.1| - 0.14 12.3 0.0 0.96 9.6 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AP_endonuc_2 PF01261.19 gi|159041227|ref|YP_001540479.1| - 7.2e-29 100.6 0.0 1e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UBA PF00627.26 gi|159041228|ref|YP_001540480.1| - 7e-09 35.2 0.2 1.8e-08 33.9 0.1 1.8 2 0 0 2 2 2 1 UBA/TS-N domain NAC PF01849.13 gi|159041228|ref|YP_001540480.1| - 1.8e-05 24.1 0.3 3.8e-05 23.1 0.1 1.6 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.1 gi|159041228|ref|YP_001540480.1| - 0.00014 21.2 0.0 0.00034 20.0 0.0 1.6 2 0 0 2 2 2 1 UBA-like domain B5 PF03484.10 gi|159041228|ref|YP_001540480.1| - 0.021 14.6 0.1 0.05 13.4 0.1 1.7 2 0 0 2 2 2 0 tRNA synthetase B5 domain Tafi-CsgC PF10610.4 gi|159041228|ref|YP_001540480.1| - 0.027 14.2 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Thin aggregative fimbriae synthesis protein PASTA PF03793.14 gi|159041228|ref|YP_001540480.1| - 0.91 9.2 3.2 14 5.4 0.0 3.3 3 1 0 3 3 3 0 PASTA domain HhH-GPD PF00730.20 gi|159041229|ref|YP_001540481.1| - 1.8e-10 41.0 0.0 2.3e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|159041229|ref|YP_001540481.1| - 0.00018 21.6 0.1 0.0081 16.3 0.1 2.4 1 1 0 1 1 1 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|159041229|ref|YP_001540481.1| - 2.3 8.5 5.8 3.7 7.8 4.0 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Glyco_hydro_1 PF00232.13 gi|159041230|ref|YP_001540482.1| - 1.5e-64 217.8 3.9 7.8e-56 189.1 0.4 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 DUF2122 PF09895.4 gi|159041231|ref|YP_001540483.1| - 1.3e-30 105.6 0.0 2.2e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) SBP_bac_5 PF00496.17 gi|159041232|ref|YP_001540484.1| - 2.2e-28 99.1 6.6 3.8e-28 98.3 4.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041232|ref|YP_001540484.1| - 0.036 13.7 15.1 0.057 13.0 10.5 1.3 1 0 0 1 1 1 0 Rifin/stevor family tRNA_bind PF01588.15 gi|159041233|ref|YP_001540485.1| - 5.5e-25 87.0 0.1 6.4e-25 86.8 0.1 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain GFO_IDH_MocA PF01408.17 gi|159041234|ref|YP_001540486.1| - 4.5e-24 85.2 0.1 7.6e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041234|ref|YP_001540486.1| - 7.4e-06 25.7 0.0 1.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|159041234|ref|YP_001540486.1| - 3.5e-05 24.1 0.0 6.3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|159041234|ref|YP_001540486.1| - 0.00018 21.4 0.0 0.00029 20.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|159041234|ref|YP_001540486.1| - 0.00037 20.7 0.0 0.00055 20.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|159041234|ref|YP_001540486.1| - 0.00041 20.4 0.1 0.00088 19.3 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|159041234|ref|YP_001540486.1| - 0.017 15.1 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain OCD_Mu_crystall PF02423.10 gi|159041234|ref|YP_001540486.1| - 0.038 12.7 0.0 0.046 12.4 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family IlvN PF07991.7 gi|159041234|ref|YP_001540486.1| - 0.052 12.9 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|159041234|ref|YP_001540486.1| - 0.14 12.0 0.3 0.9 9.3 0.0 2.3 3 0 0 3 3 3 0 ThiF family Baculo_RING PF05883.6 gi|159041235|ref|YP_001540487.1| - 0.02 14.6 0.2 0.023 14.5 0.1 1.0 1 0 0 1 1 1 0 Baculovirus U-box/Ring-like domain zf-C4 PF00105.13 gi|159041235|ref|YP_001540487.1| - 0.11 12.6 0.3 0.17 12.1 0.0 1.4 2 0 0 2 2 2 0 Zinc finger, C4 type (two domains) tRNA-synt_His PF13393.1 gi|159041236|ref|YP_001540488.1| - 3e-64 217.0 0.0 3.7e-64 216.7 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|159041236|ref|YP_001540488.1| - 1.2e-17 64.0 0.5 1.8e-17 63.4 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|159041236|ref|YP_001540488.1| - 2.5e-10 40.1 1.2 5.8e-10 38.9 0.1 2.2 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|159041236|ref|YP_001540488.1| - 0.00047 19.4 0.0 0.004 16.3 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|159041236|ref|YP_001540488.1| - 0.12 11.1 0.0 2 7.1 0.0 2.3 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) ATP-grasp PF02222.17 gi|159041238|ref|YP_001540490.1| - 1e-41 142.1 0.0 1.6e-41 141.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041238|ref|YP_001540490.1| - 4.5e-21 75.4 0.0 8.8e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|159041238|ref|YP_001540490.1| - 1.1e-09 38.0 0.0 3.7e-09 36.2 0.0 1.9 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|159041238|ref|YP_001540490.1| - 4.7e-09 35.8 0.0 1.1e-08 34.5 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|159041238|ref|YP_001540490.1| - 3.4e-08 32.6 0.0 0.0047 15.7 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|159041238|ref|YP_001540490.1| - 1.7e-05 24.7 0.0 3.9e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_chain PF00289.17 gi|159041238|ref|YP_001540490.1| - 0.00026 21.0 0.3 0.00067 19.7 0.2 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|159041238|ref|YP_001540490.1| - 0.00068 18.8 0.2 0.0013 17.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|159041238|ref|YP_001540490.1| - 0.0011 19.2 4.4 0.0064 16.8 0.7 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|159041238|ref|YP_001540490.1| - 0.0027 15.9 0.1 0.0075 14.5 0.0 1.6 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like 3HCDH_N PF02737.13 gi|159041238|ref|YP_001540490.1| - 0.0034 17.0 0.2 0.0065 16.1 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|159041238|ref|YP_001540490.1| - 0.011 15.7 1.1 0.054 13.5 0.3 2.3 1 1 0 2 2 2 0 TrkA-N domain Pyr_redox_2 PF07992.9 gi|159041238|ref|YP_001540490.1| - 0.014 15.2 0.3 0.038 13.8 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.12 gi|159041238|ref|YP_001540490.1| - 0.014 14.2 0.1 0.03 13.2 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain XdhC_C PF13478.1 gi|159041238|ref|YP_001540490.1| - 0.046 14.0 0.1 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain Epimerase PF01370.16 gi|159041238|ref|YP_001540490.1| - 0.082 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GIDA PF01134.17 gi|159041238|ref|YP_001540490.1| - 0.088 11.6 0.1 0.17 10.7 0.0 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A GATase_5 PF13507.1 gi|159041239|ref|YP_001540491.1| - 1.2e-36 125.9 0.0 4.1e-35 120.9 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|159041239|ref|YP_001540491.1| - 1e-09 38.1 0.0 1.9e-09 37.2 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|159041239|ref|YP_001540491.1| - 5.6e-09 35.7 0.0 9.6e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|159041239|ref|YP_001540491.1| - 9.3e-09 34.8 0.0 1.4e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|159041239|ref|YP_001540491.1| - 1.4e-06 27.6 0.0 2.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|159041239|ref|YP_001540491.1| - 0.00073 19.0 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|159041239|ref|YP_001540491.1| - 0.013 15.1 0.0 0.06 12.9 0.0 1.8 2 0 0 2 2 2 0 SNO glutamine amidotransferase family PurS PF02700.9 gi|159041240|ref|YP_001540492.1| - 8.9e-12 44.7 0.0 1.1e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GARS_A PF01071.14 gi|159041241|ref|YP_001540493.1| - 5.9e-41 140.1 0.0 8.7e-41 139.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|159041241|ref|YP_001540493.1| - 1.2e-21 76.9 0.2 2.7e-21 75.9 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|159041241|ref|YP_001540493.1| - 6.9e-11 42.1 0.0 1.3e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|159041241|ref|YP_001540493.1| - 4.1e-05 23.3 0.0 0.00013 21.7 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|159041241|ref|YP_001540493.1| - 7.6e-05 21.6 0.0 0.00012 20.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|159041241|ref|YP_001540493.1| - 0.018 14.9 0.0 0.045 13.6 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|159041241|ref|YP_001540493.1| - 0.056 12.7 0.0 0.099 11.9 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain SAICAR_synt PF01259.13 gi|159041242|ref|YP_001540494.1| - 1.4e-47 161.8 0.0 1.7e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase DUF433 PF04255.9 gi|159041242|ref|YP_001540494.1| - 0.047 13.1 0.1 8.8 5.8 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF433) AIRS_C PF02769.17 gi|159041243|ref|YP_001540495.1| - 3.2e-18 66.1 0.0 4.8e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|159041243|ref|YP_001540495.1| - 7.9e-13 48.4 0.1 1.9e-12 47.2 0.1 1.6 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain Pribosyltran PF00156.22 gi|159041244|ref|YP_001540496.1| - 8.3e-14 51.3 1.0 1.4e-13 50.7 0.7 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|159041244|ref|YP_001540496.1| - 0.05 12.8 0.0 0.13 11.5 0.0 1.7 1 1 0 1 1 1 0 Phosphoribosyl transferase Pox_L3_FP4 PF03339.9 gi|159041244|ref|YP_001540496.1| - 0.21 10.0 0.0 3 6.2 0.0 2.1 2 0 0 2 2 2 0 Poxvirus L3/FP4 protein GATase_7 PF13537.1 gi|159041245|ref|YP_001540497.1| - 4.2e-17 62.0 0.0 8.5e-17 61.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|159041245|ref|YP_001540497.1| - 1.6e-16 60.4 0.0 3.2e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|159041245|ref|YP_001540497.1| - 1e-13 51.0 0.5 3.6e-13 49.3 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_2 PF00310.16 gi|159041245|ref|YP_001540497.1| - 1.1e-11 44.0 0.0 5.1e-10 38.5 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferases class-II AIRS_C PF02769.17 gi|159041246|ref|YP_001540498.1| - 6.1e-43 146.4 3.7 1.4e-27 96.6 0.2 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|159041246|ref|YP_001540498.1| - 6.2e-38 128.9 1.2 1.3e-22 79.8 0.0 3.0 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRC PF00731.15 gi|159041247|ref|YP_001540499.1| - 6.1e-69 230.0 0.8 6.8e-69 229.9 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase DUF2334 PF10096.4 gi|159041247|ref|YP_001540499.1| - 0.16 11.3 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) ATP-grasp PF02222.17 gi|159041248|ref|YP_001540500.1| - 2.4e-50 170.2 0.0 3.5e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041248|ref|YP_001540500.1| - 8.7e-16 58.1 0.0 1.8e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159041248|ref|YP_001540500.1| - 1.3e-06 28.4 0.0 2.2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|159041248|ref|YP_001540500.1| - 2.4e-06 27.1 0.0 4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|159041248|ref|YP_001540500.1| - 0.00049 19.5 0.0 0.0015 17.9 0.0 1.9 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|159041248|ref|YP_001540500.1| - 0.0096 15.2 0.1 0.02 14.1 0.0 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.14 gi|159041248|ref|YP_001540500.1| - 0.02 14.0 0.0 0.043 12.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|159041248|ref|YP_001540500.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pigment_DH PF06324.6 gi|159041248|ref|YP_001540500.1| - 6.4 6.1 6.9 0.81 9.0 0.5 2.7 2 0 0 2 2 2 0 Pigment-dispersing hormone (PDH) Sugar_tr PF00083.19 gi|159041250|ref|YP_001540502.1| - 4e-82 276.1 28.7 4.8e-82 275.9 19.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041250|ref|YP_001540502.1| - 1.3e-20 73.4 37.4 1.3e-20 73.4 25.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily 2-Hacid_dh_C PF02826.14 gi|159041251|ref|YP_001540503.1| - 8e-36 122.8 0.0 1.1e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|159041251|ref|YP_001540503.1| - 2.2e-12 46.5 0.0 2.7e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|159041251|ref|YP_001540503.1| - 0.075 12.7 0.1 18 5.0 0.0 3.0 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DHquinase_I PF01487.10 gi|159041252|ref|YP_001540504.1| - 2.1e-19 70.1 0.0 2.8e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Ribosomal_L11 PF00298.14 gi|159041254|ref|YP_001540506.1| - 6.3e-17 61.4 0.2 1.1e-16 60.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|159041254|ref|YP_001540506.1| - 0.022 14.2 0.1 0.055 12.9 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein L11, N-terminal domain Ribosomal_L25p PF01386.14 gi|159041254|ref|YP_001540506.1| - 0.06 13.4 0.1 7.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Ribosomal L25p family DUF4032 PF13224.1 gi|159041254|ref|YP_001540506.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4032) dsDNA_bind PF01984.15 gi|159041255|ref|YP_001540507.1| - 0.053 13.5 1.3 1.7 8.6 0.9 2.6 1 1 0 1 1 1 0 Double-stranded DNA-binding domain Ribosomal_L13e PF01294.13 gi|159041256|ref|YP_001540508.1| - 2.1e-09 37.1 0.5 4.7e-09 35.9 0.0 1.6 1 1 0 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.12 gi|159041256|ref|YP_001540508.1| - 0.0054 16.2 2.0 0.0093 15.4 1.4 1.4 1 0 0 1 1 1 1 Ribosomal L15 MFS_1 PF07690.11 gi|159041257|ref|YP_001540509.1| - 1.3e-21 76.6 62.0 4e-12 45.5 22.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|159041257|ref|YP_001540509.1| - 0.0024 16.0 1.7 0.0024 16.0 1.1 3.8 4 0 0 4 4 4 2 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.1 gi|159041257|ref|YP_001540509.1| - 0.0091 14.4 44.8 0.013 13.9 17.9 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein Ammonium_transp PF00909.16 gi|159041258|ref|YP_001540510.1| - 9.2e-91 304.2 27.6 1.1e-90 304.0 19.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DUF4395 PF14340.1 gi|159041258|ref|YP_001540510.1| - 0.0013 18.8 2.2 0.0013 18.8 1.5 4.1 4 1 2 6 6 6 1 Domain of unknown function (DUF4395) GFO_IDH_MocA PF01408.17 gi|159041259|ref|YP_001540511.1| - 2e-24 86.4 0.0 2.9e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041259|ref|YP_001540511.1| - 6.2e-13 48.5 0.0 1.1e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|159041259|ref|YP_001540511.1| - 6e-06 26.5 0.0 1.1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|159041259|ref|YP_001540511.1| - 0.0029 17.9 0.0 0.0042 17.4 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|159041259|ref|YP_001540511.1| - 0.11 13.0 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA PF01408.17 gi|159041260|ref|YP_001540512.1| - 7.1e-20 71.7 0.1 1.2e-19 70.9 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041260|ref|YP_001540512.1| - 1.6e-07 31.1 0.0 3.2e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|159041260|ref|YP_001540512.1| - 0.031 14.6 0.4 0.056 13.8 0.3 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PGM_PMM_II PF02879.11 gi|159041260|ref|YP_001540512.1| - 0.044 14.1 0.1 1.3 9.3 0.0 2.5 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BPD_transp_1 PF00528.17 gi|159041261|ref|YP_001540513.1| - 1e-35 122.9 11.5 1e-35 122.9 8.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TMEM125 PF15109.1 gi|159041261|ref|YP_001540513.1| - 0.44 10.6 2.5 0.45 10.6 0.6 1.9 2 0 0 2 2 2 0 TMEM125 protein family BPD_transp_1 PF00528.17 gi|159041262|ref|YP_001540514.1| - 8.4e-22 77.5 16.7 8.4e-22 77.5 11.6 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|159041262|ref|YP_001540514.1| - 4.2e-07 29.2 1.7 4.2e-07 29.2 1.2 2.3 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ATPase_gene1 PF09527.5 gi|159041262|ref|YP_001540514.1| - 0.05 13.4 1.4 0.05 13.4 1.0 3.1 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) SBP_bac_5 PF00496.17 gi|159041263|ref|YP_001540515.1| - 8.4e-37 126.8 3.1 8.4e-37 126.8 2.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041263|ref|YP_001540515.1| - 0.33 10.5 3.7 0.48 10.0 2.5 1.2 1 0 0 1 1 1 0 Rifin/stevor family Aminotran_3 PF00202.16 gi|159041265|ref|YP_001540517.1| - 1.2e-108 363.0 0.0 1.4e-108 362.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF711 PF05167.7 gi|159041266|ref|YP_001540518.1| - 6.3e-57 193.1 0.0 8.7e-57 192.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) YtzH PF14165.1 gi|159041268|ref|YP_001540520.1| - 0.11 12.7 0.2 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 YtzH-like protein Peptidase_M50 PF02163.17 gi|159041269|ref|YP_001540521.1| - 1.2e-15 56.9 9.3 3.7e-15 55.3 6.4 1.7 1 1 0 1 1 1 1 Peptidase family M50 DUF2516 PF10724.4 gi|159041269|ref|YP_001540521.1| - 0.089 12.7 0.2 0.089 12.7 0.1 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2516) Reticulon PF02453.12 gi|159041269|ref|YP_001540521.1| - 5.7 6.5 8.8 0.51 9.9 1.4 2.3 2 1 0 2 2 2 0 Reticulon BPD_transp_1 PF00528.17 gi|159041270|ref|YP_001540522.1| - 4.7e-33 114.2 16.9 4.7e-33 114.2 11.7 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Tmemb_18A PF09771.4 gi|159041270|ref|YP_001540522.1| - 2.5 8.0 6.7 0.11 12.4 0.3 1.9 3 0 0 3 3 3 0 Transmembrane protein 188 BPD_transp_1 PF00528.17 gi|159041271|ref|YP_001540523.1| - 1.9e-24 86.1 20.0 1.9e-24 86.1 13.9 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|159041272|ref|YP_001540524.1| - 9.7e-27 93.9 0.0 1.5e-26 93.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041272|ref|YP_001540524.1| - 3.1e-15 56.9 0.1 1.1e-13 51.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|159041272|ref|YP_001540524.1| - 2.9e-14 53.1 0.0 5.1e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|159041272|ref|YP_001540524.1| - 5.4e-07 29.8 0.5 4e-06 27.0 0.4 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159041272|ref|YP_001540524.1| - 5.9e-07 28.9 0.2 4.2e-06 26.1 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|159041272|ref|YP_001540524.1| - 9.7e-05 21.9 0.8 0.41 10.0 0.1 2.5 1 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|159041272|ref|YP_001540524.1| - 0.00011 21.6 0.0 0.00022 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|159041272|ref|YP_001540524.1| - 0.00016 20.8 0.2 0.14 11.1 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain CbiA PF01656.18 gi|159041272|ref|YP_001540524.1| - 0.0002 20.8 1.0 0.079 12.3 0.0 2.8 3 0 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|159041272|ref|YP_001540524.1| - 0.00087 18.7 0.4 0.0067 15.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041272|ref|YP_001540524.1| - 0.0012 18.8 0.2 0.0021 18.0 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|159041272|ref|YP_001540524.1| - 0.0024 18.6 0.0 0.005 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|159041272|ref|YP_001540524.1| - 0.0029 16.8 0.1 0.0051 16.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|159041272|ref|YP_001540524.1| - 0.0034 16.8 0.1 0.027 13.9 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|159041272|ref|YP_001540524.1| - 0.0083 16.4 0.2 0.019 15.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|159041272|ref|YP_001540524.1| - 0.0083 15.5 0.2 0.32 10.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.1 gi|159041272|ref|YP_001540524.1| - 0.011 16.1 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|159041272|ref|YP_001540524.1| - 0.013 14.1 0.7 0.25 9.8 0.2 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|159041272|ref|YP_001540524.1| - 0.021 13.9 0.1 0.12 11.5 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.10 gi|159041272|ref|YP_001540524.1| - 0.033 13.8 0.0 1.1 8.8 0.0 2.3 2 0 0 2 2 2 0 NTPase cobW PF02492.14 gi|159041272|ref|YP_001540524.1| - 0.042 13.2 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|159041272|ref|YP_001540524.1| - 0.053 12.3 0.2 0.88 8.2 0.0 2.1 2 0 0 2 2 2 0 ArgK protein AAA_5 PF07728.9 gi|159041272|ref|YP_001540524.1| - 0.055 13.1 0.1 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|159041272|ref|YP_001540524.1| - 0.09 12.7 0.1 0.55 10.1 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|159041272|ref|YP_001540524.1| - 0.093 11.5 0.0 0.24 10.2 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|159041272|ref|YP_001540524.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|159041272|ref|YP_001540524.1| - 0.11 11.4 0.9 0.35 9.7 0.1 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein PRK PF00485.13 gi|159041272|ref|YP_001540524.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.15 gi|159041272|ref|YP_001540524.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.1 gi|159041272|ref|YP_001540524.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|159041272|ref|YP_001540524.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_31 PF13614.1 gi|159041272|ref|YP_001540524.1| - 0.17 11.8 0.5 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4199 PF13858.1 gi|159041273|ref|YP_001540525.1| - 0.0066 16.3 1.9 0.0083 16.0 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4199) DUF3165 PF11364.3 gi|159041273|ref|YP_001540525.1| - 0.01 15.9 1.4 0.015 15.4 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3165) DUF1118 PF06549.7 gi|159041273|ref|YP_001540525.1| - 0.013 15.5 0.2 0.013 15.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) DUF3784 PF12650.2 gi|159041273|ref|YP_001540525.1| - 0.02 14.8 1.5 0.024 14.5 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) 7TMR-DISM_7TM PF07695.6 gi|159041273|ref|YP_001540525.1| - 0.021 14.5 2.1 0.024 14.2 1.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling Peptidase_M50B PF13398.1 gi|159041273|ref|YP_001540525.1| - 0.041 13.2 0.8 0.045 13.1 0.6 1.0 1 0 0 1 1 1 0 Peptidase M50B-like DUF1430 PF07242.6 gi|159041273|ref|YP_001540525.1| - 0.049 13.7 0.6 0.054 13.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1430) DUF4131 PF13567.1 gi|159041273|ref|YP_001540525.1| - 0.062 12.7 0.3 0.066 12.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3522 PF12036.3 gi|159041273|ref|YP_001540525.1| - 0.074 12.8 0.1 0.08 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) YjgP_YjgQ PF03739.9 gi|159041273|ref|YP_001540525.1| - 0.084 11.6 0.8 0.092 11.4 0.6 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Col_cuticle_N PF01484.12 gi|159041273|ref|YP_001540525.1| - 0.095 12.3 2.8 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain DUF843 PF05814.6 gi|159041273|ref|YP_001540525.1| - 0.13 12.1 1.5 0.17 11.7 1.0 1.3 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF843) RCR PF12273.3 gi|159041273|ref|YP_001540525.1| - 0.21 12.1 0.1 0.21 12.1 0.0 1.3 2 0 0 2 2 1 0 Chitin synthesis regulation, resistance to Congo red OPT PF03169.10 gi|159041273|ref|YP_001540525.1| - 0.22 9.8 4.2 0.24 9.7 2.9 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF454 PF04304.8 gi|159041273|ref|YP_001540525.1| - 0.82 9.7 6.0 1 9.4 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF454) CcmD PF04995.9 gi|159041273|ref|YP_001540525.1| - 2.1 8.1 5.2 0.66 9.7 0.2 2.2 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) SdpI PF13630.1 gi|159041273|ref|YP_001540525.1| - 5.8 6.7 7.2 7.3 6.3 5.0 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4083 PF13314.1 gi|159041273|ref|YP_001540525.1| - 6.4 6.6 7.5 5 7.0 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF3899 PF13038.1 gi|159041273|ref|YP_001540525.1| - 7 6.8 8.9 4.5 7.4 2.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) ADP_ribosyl_GH PF03747.9 gi|159041274|ref|YP_001540526.1| - 6.9e-21 75.2 0.0 1.1e-20 74.6 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Abhydrolase_6 PF12697.2 gi|159041275|ref|YP_001540527.1| - 1.9e-22 80.2 0.0 3.5e-15 56.5 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|159041275|ref|YP_001540527.1| - 3.5e-16 59.2 0.0 4.3e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|159041275|ref|YP_001540527.1| - 1.2e-09 38.1 0.0 5.1e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|159041275|ref|YP_001540527.1| - 0.036 13.9 0.0 0.079 12.8 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase HMGL-like PF00682.14 gi|159041276|ref|YP_001540528.1| - 1e-40 139.9 0.0 1.5e-40 139.3 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|159041276|ref|YP_001540528.1| - 4.8e-22 78.1 0.2 4.5e-21 75.0 0.0 2.2 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain MobB PF03205.9 gi|159041276|ref|YP_001540528.1| - 0.074 12.7 0.1 0.33 10.6 0.0 2.1 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Radical_SAM PF04055.16 gi|159041276|ref|YP_001540528.1| - 0.11 12.6 0.2 1.3 9.1 0.0 2.6 2 1 1 3 3 3 0 Radical SAM superfamily TIM PF00121.13 gi|159041277|ref|YP_001540529.1| - 7.1e-32 110.3 0.3 1.8e-29 102.4 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|159041277|ref|YP_001540529.1| - 1.4e-06 27.5 1.7 2.7e-06 26.6 1.1 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|159041277|ref|YP_001540529.1| - 5.1e-05 21.9 2.0 7.7e-05 21.3 0.4 1.9 3 0 0 3 3 3 1 Tryptophan synthase alpha chain IGPS PF00218.16 gi|159041277|ref|YP_001540529.1| - 0.00013 21.0 0.1 0.00028 20.0 0.0 1.5 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|159041277|ref|YP_001540529.1| - 0.00035 19.9 1.6 0.0012 18.1 0.1 2.4 2 1 1 3 3 3 1 Histidine biosynthesis protein PcrB PF01884.12 gi|159041277|ref|YP_001540529.1| - 0.0013 18.0 5.2 0.025 13.8 1.9 2.8 2 1 0 3 3 3 1 PcrB family FMN_dh PF01070.13 gi|159041277|ref|YP_001540529.1| - 0.0022 16.9 0.5 0.0041 16.0 0.3 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|159041277|ref|YP_001540529.1| - 0.0081 15.3 1.2 0.0097 15.0 0.2 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase Ribosomal_L18e PF00828.14 gi|159041278|ref|YP_001540530.1| - 1.2e-29 103.3 1.4 1.5e-29 103.0 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Pkinase PF00069.20 gi|159041279|ref|YP_001540531.1| - 5e-06 25.8 0.0 6.3e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|159041279|ref|YP_001540531.1| - 1.2e-05 25.2 0.1 0.00098 18.9 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|159041279|ref|YP_001540531.1| - 0.00016 21.0 0.0 0.00021 20.7 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|159041279|ref|YP_001540531.1| - 0.00023 20.3 0.0 0.00084 18.4 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|159041279|ref|YP_001540531.1| - 0.012 14.8 0.6 0.12 11.6 0.0 2.1 1 1 1 2 2 2 0 Lipopolysaccharide core biosynthesis protein (WaaY) DUF1894 PF08979.6 gi|159041280|ref|YP_001540532.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1894) Ribosomal_S5_C PF03719.10 gi|159041281|ref|YP_001540533.1| - 3.6e-23 80.6 0.1 1.1e-22 79.1 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|159041281|ref|YP_001540533.1| - 5e-20 71.0 1.0 8.4e-20 70.2 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain AP_endonuc_2 PF01261.19 gi|159041282|ref|YP_001540534.1| - 7.6e-14 51.5 0.0 1.1e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HEAT PF02985.17 gi|159041282|ref|YP_001540534.1| - 0.16 12.1 0.0 0.67 10.1 0.0 2.0 1 0 0 1 1 1 0 HEAT repeat FGGY_N PF00370.16 gi|159041283|ref|YP_001540535.1| - 3.9e-29 101.6 0.0 6.3e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|159041283|ref|YP_001540535.1| - 3.6e-25 88.7 0.0 6.2e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain AFOR_C PF01314.13 gi|159041284|ref|YP_001540536.1| - 5.7e-136 453.1 0.1 7.7e-136 452.7 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|159041284|ref|YP_001540536.1| - 2.1e-82 275.3 0.4 3.1e-82 274.7 0.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldolase_II PF00596.16 gi|159041285|ref|YP_001540537.1| - 3e-47 160.5 0.1 3.5e-47 160.3 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Sugar_tr PF00083.19 gi|159041286|ref|YP_001540538.1| - 5.7e-66 222.9 34.2 6.7e-66 222.7 23.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041286|ref|YP_001540538.1| - 1.9e-33 115.6 44.4 1.9e-33 115.6 30.8 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily HTH_20 PF12840.2 gi|159041287|ref|YP_001540539.1| - 4.4e-07 29.6 0.2 7.4e-07 28.8 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|159041287|ref|YP_001540539.1| - 3.2e-06 26.6 0.0 5.7e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.14 gi|159041287|ref|YP_001540539.1| - 2.1e-05 24.1 0.1 3.6e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|159041287|ref|YP_001540539.1| - 2.5e-05 23.8 0.1 5.6e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|159041287|ref|YP_001540539.1| - 0.00082 18.9 0.5 0.0019 17.7 0.4 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|159041287|ref|YP_001540539.1| - 0.0024 18.1 0.3 0.0052 17.0 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|159041287|ref|YP_001540539.1| - 0.0058 15.9 0.1 0.015 14.6 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|159041287|ref|YP_001540539.1| - 0.12 12.1 0.2 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.1 gi|159041287|ref|YP_001540539.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.1 gi|159041289|ref|YP_001540541.1| - 2.1e-18 65.9 0.5 2.8e-18 65.5 0.3 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|159041289|ref|YP_001540541.1| - 0.012 15.1 0.3 0.58 9.7 0.1 3.3 2 1 0 2 2 2 0 IclR helix-turn-helix domain AAA_assoc_C PF09821.4 gi|159041289|ref|YP_001540541.1| - 0.018 15.2 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain Cdc6_C PF09079.6 gi|159041289|ref|YP_001540541.1| - 0.068 12.8 1.8 0.11 12.2 0.1 2.1 2 1 1 3 3 3 0 CDC6, C terminal HTH_24 PF13412.1 gi|159041289|ref|YP_001540541.1| - 0.074 12.4 1.6 0.12 11.8 0.2 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_S19e PF01090.14 gi|159041289|ref|YP_001540541.1| - 0.079 12.3 0.0 0.11 11.9 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein S19e MarR_2 PF12802.2 gi|159041289|ref|YP_001540541.1| - 0.091 12.4 0.1 0.21 11.2 0.0 1.6 1 1 0 1 1 1 0 MarR family TrmB PF01978.14 gi|159041289|ref|YP_001540541.1| - 0.14 11.9 0.1 0.27 10.9 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PEPCK PF00821.13 gi|159041290|ref|YP_001540542.1| - 5.6e-201 668.7 0.0 6.5e-201 668.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Spt4 PF06093.8 gi|159041291|ref|YP_001540543.1| - 2.7e-17 62.4 0.2 3.9e-17 61.8 0.1 1.3 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.1 gi|159041291|ref|YP_001540543.1| - 0.0012 18.2 3.9 0.002 17.5 2.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|159041291|ref|YP_001540543.1| - 0.0039 16.9 0.5 0.0056 16.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_4 PF14570.1 gi|159041291|ref|YP_001540543.1| - 0.0065 16.0 1.1 0.0099 15.4 0.7 1.2 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|159041291|ref|YP_001540543.1| - 0.053 12.7 3.8 0.088 12.0 2.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|159041291|ref|YP_001540543.1| - 0.14 11.3 1.3 0.26 10.5 0.1 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF1272 PF06906.6 gi|159041291|ref|YP_001540543.1| - 0.16 11.8 1.2 0.34 10.7 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF1451 PF07295.6 gi|159041291|ref|YP_001540543.1| - 0.19 11.4 0.4 0.25 11.0 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Prok-RING_1 PF14446.1 gi|159041291|ref|YP_001540543.1| - 0.31 10.8 1.8 0.51 10.1 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|159041291|ref|YP_001540543.1| - 0.35 10.8 2.4 2.8 8.0 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_L32p PF01783.18 gi|159041291|ref|YP_001540543.1| - 1.3 9.2 3.8 3.1 8.0 2.6 1.6 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-tcix PF14952.1 gi|159041291|ref|YP_001540543.1| - 1.3 8.3 5.3 4.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.4 gi|159041291|ref|YP_001540543.1| - 1.6 8.5 5.0 3 7.6 3.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|159041291|ref|YP_001540543.1| - 5.8 7.1 7.7 8.8 6.5 3.9 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) Prim_Zn_Ribbon PF08273.7 gi|159041291|ref|YP_001540543.1| - 7.5 6.7 7.0 13 5.9 1.9 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase HTH_45 PF14947.1 gi|159041292|ref|YP_001540544.1| - 1e-25 89.3 0.1 1.1e-25 89.1 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|159041292|ref|YP_001540544.1| - 0.0054 16.5 0.0 0.01 15.6 0.0 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HemN_C PF06969.11 gi|159041292|ref|YP_001540544.1| - 0.0096 15.9 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 HemN C-terminal domain Fe_dep_repress PF01325.14 gi|159041292|ref|YP_001540544.1| - 0.013 15.4 0.0 0.028 14.3 0.0 1.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TilS PF09179.6 gi|159041292|ref|YP_001540544.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 TilS substrate binding domain EAP30 PF04157.11 gi|159041292|ref|YP_001540544.1| - 0.022 13.9 0.0 0.33 10.0 0.0 2.0 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_5 PF01022.15 gi|159041292|ref|YP_001540544.1| - 0.07 12.8 0.1 0.15 11.7 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|159041292|ref|YP_001540544.1| - 0.07 12.6 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TYW3 PF02676.9 gi|159041294|ref|YP_001540546.1| - 1.1e-43 148.7 0.0 1.3e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 Bul1_C PF04426.7 gi|159041294|ref|YP_001540546.1| - 0.021 14.0 0.0 0.029 13.5 0.0 1.1 1 0 0 1 1 1 0 Bul1 C terminus HIN PF02760.10 gi|159041294|ref|YP_001540546.1| - 0.087 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 HIN-200/IF120x domain CobD_Cbib PF03186.8 gi|159041296|ref|YP_001540548.1| - 1.4e-68 231.1 1.4 1.7e-68 230.8 0.9 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Ribosomal_L18e PF00828.14 gi|159041297|ref|YP_001540549.1| - 7.8e-17 61.8 0.1 9.2e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Lipoprotein_9 PF03180.9 gi|159041297|ref|YP_001540549.1| - 0.088 11.6 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 NLPA lipoprotein Dimerisation PF08100.6 gi|159041297|ref|YP_001540549.1| - 0.15 11.9 0.0 0.67 9.8 0.0 2.0 2 0 0 2 2 2 0 Dimerisation domain 4HBT PF03061.17 gi|159041298|ref|YP_001540550.1| - 1.1e-21 76.7 1.6 1.4e-10 41.1 0.1 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|159041298|ref|YP_001540550.1| - 0.0059 17.0 0.2 2.6 8.4 0.0 2.6 1 1 0 2 2 2 2 Thioesterase-like superfamily TatC PF00902.13 gi|159041299|ref|YP_001540551.1| - 5.5e-51 173.0 25.8 7.4e-51 172.5 17.9 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Metallophos_2 PF12850.2 gi|159041300|ref|YP_001540552.1| - 5.7e-08 32.7 0.0 8.3e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|159041300|ref|YP_001540552.1| - 7.6e-05 22.2 0.9 0.00039 19.8 0.6 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase MoeA_N PF03453.12 gi|159041301|ref|YP_001540553.1| - 7.8e-38 129.3 0.0 3.4e-37 127.2 0.0 2.0 3 0 0 3 3 3 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|159041301|ref|YP_001540553.1| - 1.4e-14 53.6 0.0 2.3e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|159041301|ref|YP_001540553.1| - 8.3e-09 35.2 0.0 1.7e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) His_Phos_1 PF00300.17 gi|159041303|ref|YP_001540555.1| - 8.4e-29 100.6 0.0 1e-28 100.4 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) zf-ribbon_3 PF13248.1 gi|159041304|ref|YP_001540556.1| - 0.049 12.8 0.3 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|159041304|ref|YP_001540556.1| - 0.062 12.9 0.1 0.1 12.2 0.1 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2757 PF10955.3 gi|159041304|ref|YP_001540556.1| - 0.14 12.3 0.2 0.27 11.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) TF_Zn_Ribbon PF08271.7 gi|159041304|ref|YP_001540556.1| - 0.19 11.1 2.3 8.7 5.7 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|159041304|ref|YP_001540556.1| - 0.59 9.8 2.5 1.2 8.8 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin PF00301.15 gi|159041304|ref|YP_001540556.1| - 0.72 9.7 6.1 3.4 7.6 4.2 1.9 1 1 0 1 1 1 0 Rubredoxin Homoserine_dh PF00742.14 gi|159041305|ref|YP_001540557.1| - 4.7e-43 146.9 0.1 6e-43 146.5 0.1 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_2 PF03446.10 gi|159041305|ref|YP_001540557.1| - 0.015 15.1 1.2 1 9.2 0.1 2.3 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|159041305|ref|YP_001540557.1| - 0.083 12.6 0.5 0.8 9.4 0.0 2.6 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF46 PF01864.12 gi|159041306|ref|YP_001540558.1| - 1.4e-41 142.3 1.0 1.6e-41 142.0 0.7 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|159041306|ref|YP_001540558.1| - 7.9e-07 28.9 2.1 1.6e-06 27.9 1.4 1.5 1 1 0 1 1 1 1 Cytidylyltransferase family COX4_pro_2 PF07835.7 gi|159041306|ref|YP_001540558.1| - 0.14 12.1 0.1 0.48 10.4 0.1 1.9 1 0 0 1 1 1 0 Bacterial aa3 type cytochrome c oxidase subunit IV zf-H2C2_2 PF13465.1 gi|159041307|ref|YP_001540559.1| - 1.4e-08 34.6 5.5 0.27 11.6 0.1 4.5 4 0 0 4 4 4 2 Zinc-finger double domain zf-Di19 PF05605.7 gi|159041307|ref|YP_001540559.1| - 1.9e-07 31.1 6.0 1.5e-05 25.0 0.4 2.9 3 0 0 3 3 3 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|159041307|ref|YP_001540559.1| - 5.8e-07 29.4 6.9 0.42 11.0 0.0 4.3 4 0 0 4 4 4 1 C2H2-type zinc finger zf-met PF12874.2 gi|159041307|ref|YP_001540559.1| - 9.3e-06 25.6 9.1 0.01 15.9 0.0 3.7 4 0 0 4 4 3 2 Zinc-finger of C2H2 type zf-BED PF02892.10 gi|159041307|ref|YP_001540559.1| - 1.6e-05 24.5 5.2 0.29 10.9 0.0 3.7 3 1 1 4 4 4 2 BED zinc finger zf-C2H2_jaz PF12171.3 gi|159041307|ref|YP_001540559.1| - 7.2e-05 22.8 7.7 0.076 13.1 0.1 3.3 3 0 0 3 3 3 2 Zinc-finger double-stranded RNA-binding zf-ribbon_3 PF13248.1 gi|159041307|ref|YP_001540559.1| - 0.00029 19.9 7.4 0.018 14.2 0.1 3.7 4 0 0 4 4 4 1 zinc-ribbon domain CpXC PF14353.1 gi|159041307|ref|YP_001540559.1| - 0.0003 20.7 3.7 0.59 10.1 0.1 3.1 2 1 0 3 3 3 2 CpXC protein zf-UBP PF02148.14 gi|159041307|ref|YP_001540559.1| - 0.0017 18.4 10.1 0.017 15.2 2.4 3.1 2 1 1 3 3 2 1 Zn-finger in ubiquitin-hydrolases and other protein Zn-ribbon_8 PF09723.5 gi|159041307|ref|YP_001540559.1| - 0.0021 17.9 4.2 0.35 10.8 0.1 3.9 4 0 0 4 4 4 1 Zinc ribbon domain zf-C2H2_2 PF12756.2 gi|159041307|ref|YP_001540559.1| - 0.0052 16.8 8.4 9.3 6.4 4.2 3.4 1 1 2 3 3 2 0 C2H2 type zinc-finger (2 copies) PRP21_like_P PF12230.3 gi|159041307|ref|YP_001540559.1| - 0.0065 16.0 0.3 0.0065 16.0 0.2 2.2 3 0 0 3 3 2 1 Pre-mRNA splicing factor PRP21 like protein zf-DNA_Pol PF08996.5 gi|159041307|ref|YP_001540559.1| - 0.007 15.7 0.4 0.007 15.7 0.3 1.8 1 1 1 2 2 2 1 DNA Polymerase alpha zinc finger zf-CHY PF05495.7 gi|159041307|ref|YP_001540559.1| - 0.0093 16.1 4.8 0.12 12.5 0.5 2.8 1 1 2 3 3 3 2 CHY zinc finger DZR PF12773.2 gi|159041307|ref|YP_001540559.1| - 0.011 15.4 7.2 0.88 9.4 5.0 3.1 1 1 0 1 1 1 0 Double zinc ribbon zf-Sec23_Sec24 PF04810.10 gi|159041307|ref|YP_001540559.1| - 0.014 14.9 5.1 5.9 6.5 0.0 3.9 4 0 0 4 4 4 0 Sec23/Sec24 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|159041307|ref|YP_001540559.1| - 0.02 14.6 7.3 1.2 9.0 2.0 3.6 3 1 0 3 3 3 0 Transposase zinc-ribbon domain DUF1644 PF07800.7 gi|159041307|ref|YP_001540559.1| - 0.024 14.5 3.5 0.049 13.4 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1644) zf-C2H2 PF00096.21 gi|159041307|ref|YP_001540559.1| - 0.026 14.8 0.1 0.026 14.8 0.1 5.3 4 2 0 4 4 4 0 Zinc finger, C2H2 type Endonuclease_7 PF02945.10 gi|159041307|ref|YP_001540559.1| - 0.031 13.9 0.7 0.031 13.9 0.5 2.4 1 1 2 3 3 3 0 Recombination endonuclease VII Sgf11 PF08209.6 gi|159041307|ref|YP_001540559.1| - 0.051 12.8 11.1 0.12 11.6 0.1 4.0 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) DUF329 PF03884.9 gi|159041307|ref|YP_001540559.1| - 0.075 12.6 4.9 1.4 8.4 0.2 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF329) Elf1 PF05129.8 gi|159041307|ref|YP_001540559.1| - 0.075 12.7 4.8 0.44 10.2 0.5 2.7 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like UPF0547 PF10571.4 gi|159041307|ref|YP_001540559.1| - 0.088 12.5 11.4 0.37 10.5 0.5 3.7 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|159041307|ref|YP_001540559.1| - 0.095 12.3 4.6 0.24 11.0 1.6 2.4 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family SprT-like PF10263.4 gi|159041307|ref|YP_001540559.1| - 0.097 12.3 1.5 3.5 7.2 0.0 2.2 1 1 1 2 2 2 0 SprT-like family zf-nanos PF05741.8 gi|159041307|ref|YP_001540559.1| - 0.1 12.5 6.5 6.9 6.7 0.1 3.7 4 0 0 4 4 3 0 Nanos RNA binding domain zinc_ribbon_2 PF13240.1 gi|159041307|ref|YP_001540559.1| - 0.12 11.8 0.4 0.12 11.8 0.3 3.3 3 1 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.3 gi|159041307|ref|YP_001540559.1| - 0.15 12.0 3.3 0.79 9.7 0.1 2.6 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3505 PF12013.3 gi|159041307|ref|YP_001540559.1| - 0.15 12.2 8.8 15 5.8 1.4 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF3505) Prok-RING_1 PF14446.1 gi|159041307|ref|YP_001540559.1| - 0.2 11.4 7.5 8.8 6.1 0.1 3.9 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|159041307|ref|YP_001540559.1| - 0.29 10.9 6.7 3.1 7.6 1.4 3.0 2 1 1 3 3 2 0 zinc-ribbons zinc_ribbon_5 PF13719.1 gi|159041307|ref|YP_001540559.1| - 0.31 10.6 12.3 2.6 7.7 2.3 3.9 3 1 0 3 3 3 0 zinc-ribbon domain DUF3268 PF11672.3 gi|159041307|ref|YP_001540559.1| - 0.38 10.8 5.8 0.16 12.0 0.5 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF3268) TF_Zn_Ribbon PF08271.7 gi|159041307|ref|YP_001540559.1| - 0.41 10.0 8.9 1.7 8.0 0.1 3.7 4 0 0 4 4 4 0 TFIIB zinc-binding zf-C2HC_2 PF13913.1 gi|159041307|ref|YP_001540559.1| - 0.58 9.8 0.1 0.58 9.8 0.1 3.6 4 0 0 4 4 4 0 zinc-finger of a C2HC-type DnaJ_CXXCXGXG PF00684.14 gi|159041307|ref|YP_001540559.1| - 0.69 10.0 5.7 1.2 9.2 0.1 2.5 1 1 2 3 3 3 0 DnaJ central domain TerY-C PF15616.1 gi|159041307|ref|YP_001540559.1| - 0.72 9.7 6.1 0.98 9.3 0.7 3.1 2 1 2 4 4 4 0 TerY-C metal binding domain zf-LITAF-like PF10601.4 gi|159041307|ref|YP_001540559.1| - 0.81 9.5 9.0 1.7 8.5 0.2 3.2 3 1 0 3 3 3 0 LITAF-like zinc ribbon domain FYDLN_acid PF09538.5 gi|159041307|ref|YP_001540559.1| - 0.87 10.1 2.8 1.3 9.6 0.2 2.4 3 1 0 3 3 2 0 Protein of unknown function (FYDLN_acid) zf-RING_3 PF14369.1 gi|159041307|ref|YP_001540559.1| - 0.87 9.6 4.7 8.2 6.5 0.1 3.1 4 0 0 4 4 3 0 zinc-finger zf-ISL3 PF14690.1 gi|159041307|ref|YP_001540559.1| - 1.1 9.3 10.1 2.4 8.2 2.9 3.4 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|159041307|ref|YP_001540559.1| - 1.4 8.4 5.9 0.89 9.1 0.3 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger IBR PF01485.16 gi|159041307|ref|YP_001540559.1| - 1.7 8.6 4.9 1.7 8.5 0.2 2.5 1 1 1 2 2 2 0 IBR domain Rubredoxin PF00301.15 gi|159041307|ref|YP_001540559.1| - 1.9 8.4 11.2 28 4.6 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin zf-HIT PF04438.11 gi|159041307|ref|YP_001540559.1| - 2 8.1 12.2 6.7 6.4 0.1 3.9 4 0 0 4 4 4 0 HIT zinc finger zinc_ribbon_4 PF13717.1 gi|159041307|ref|YP_001540559.1| - 2.1 8.0 13.0 9.7 5.9 2.9 3.8 3 1 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159041307|ref|YP_001540559.1| - 2.3 7.9 8.2 1 9.0 1.1 3.0 1 1 2 3 3 3 0 Putative transposase DNA-binding domain ADK_lid PF05191.9 gi|159041307|ref|YP_001540559.1| - 2.7 7.7 9.0 18 5.1 0.1 3.8 4 0 0 4 4 4 0 Adenylate kinase, active site lid Lar_restr_allev PF14354.1 gi|159041307|ref|YP_001540559.1| - 2.9 8.2 6.7 4.4 7.6 0.9 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-Mss51 PF13824.1 gi|159041307|ref|YP_001540559.1| - 3.4 7.6 5.2 0.97 9.3 0.2 2.4 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF4428 PF14471.1 gi|159041307|ref|YP_001540559.1| - 3.8 7.3 6.7 22 4.9 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4428) FdhE PF04216.7 gi|159041307|ref|YP_001540559.1| - 3.9 7.0 5.3 0.43 10.2 0.2 1.8 3 0 0 3 3 2 0 Protein involved in formate dehydrogenase formation zf-NADH-PPase PF09297.6 gi|159041307|ref|YP_001540559.1| - 4.7 6.8 8.7 11 5.6 0.1 3.7 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain C1_3 PF07649.7 gi|159041307|ref|YP_001540559.1| - 5 7.2 10.2 5.9 7.0 0.1 3.5 4 0 0 4 4 3 0 C1-like domain zf-C3HC4_3 PF13920.1 gi|159041307|ref|YP_001540559.1| - 6.1 6.6 11.4 7.7 6.2 2.0 3.6 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) GAGA PF09237.6 gi|159041307|ref|YP_001540559.1| - 9 5.9 10.1 5.4 6.6 0.1 3.3 2 1 1 3 3 3 0 GAGA factor DUF4451 PF14616.1 gi|159041307|ref|YP_001540559.1| - 9.6 5.9 7.7 5.7 6.7 0.0 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4451) C1_1 PF00130.17 gi|159041307|ref|YP_001540559.1| - 9.8 5.9 7.1 5 6.9 0.3 2.7 2 1 1 3 3 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF998 PF06197.8 gi|159041308|ref|YP_001540560.1| - 1.5e-30 105.8 20.6 1.7e-30 105.6 14.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF4418 PF14387.1 gi|159041308|ref|YP_001540560.1| - 1.9 8.2 7.7 36 4.1 4.8 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) YfhO PF09586.5 gi|159041308|ref|YP_001540560.1| - 2.7 5.9 10.2 3.1 5.6 7.1 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF2069 PF09842.4 gi|159041308|ref|YP_001540560.1| - 3.7 7.5 13.3 0.12 12.3 0.4 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2069) CYTH PF01928.16 gi|159041309|ref|YP_001540561.1| - 1.4e-32 112.9 0.1 1.5e-32 112.7 0.0 1.0 1 0 0 1 1 1 1 CYTH domain MFS_1 PF07690.11 gi|159041310|ref|YP_001540562.1| - 2.3e-21 75.8 33.5 2.3e-21 75.8 23.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|159041310|ref|YP_001540562.1| - 5.9e-06 25.9 3.7 0.0019 17.9 0.4 3.2 2 1 0 2 2 2 2 MFS_1 like family Lysis_S PF04971.7 gi|159041310|ref|YP_001540562.1| - 0.15 11.7 4.1 0.85 9.3 0.0 3.4 3 1 0 3 3 3 0 Lysis protein S Folate_carrier PF01770.13 gi|159041310|ref|YP_001540562.1| - 5.6 5.3 19.7 0.012 14.1 3.1 2.9 3 0 0 3 3 3 0 Reduced folate carrier ABC_tran PF00005.22 gi|159041311|ref|YP_001540563.1| - 1.1e-28 100.2 0.0 1.5e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041311|ref|YP_001540563.1| - 2.6e-15 57.1 0.0 2.4e-08 34.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|159041311|ref|YP_001540563.1| - 2.1e-05 23.7 0.0 0.00046 19.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|159041311|ref|YP_001540563.1| - 0.0014 17.9 0.3 1.2 8.2 0.0 2.4 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|159041311|ref|YP_001540563.1| - 0.0016 18.5 0.2 0.017 15.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|159041311|ref|YP_001540563.1| - 0.0032 17.6 0.1 0.013 15.7 0.1 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|159041311|ref|YP_001540563.1| - 0.0086 15.5 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|159041311|ref|YP_001540563.1| - 0.0091 15.4 0.1 0.41 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|159041311|ref|YP_001540563.1| - 0.013 15.7 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|159041311|ref|YP_001540563.1| - 0.018 14.8 0.1 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|159041311|ref|YP_001540563.1| - 0.024 14.2 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|159041311|ref|YP_001540563.1| - 0.041 11.2 0.0 0.055 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_17 PF13207.1 gi|159041311|ref|YP_001540563.1| - 0.055 14.2 0.0 0.66 10.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|159041311|ref|YP_001540563.1| - 0.067 12.6 0.1 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_tran PF00005.22 gi|159041312|ref|YP_001540564.1| - 1.9e-37 128.6 0.2 5.2e-18 65.6 0.0 3.1 2 1 0 2 2 2 2 ABC transporter RLI PF04068.10 gi|159041312|ref|YP_001540564.1| - 2.4e-15 55.8 3.3 6.6e-15 54.3 2.3 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.1 gi|159041312|ref|YP_001540564.1| - 1.8e-12 47.8 4.9 0.0004 20.4 2.2 4.2 3 1 0 3 3 3 3 AAA domain SMC_N PF02463.14 gi|159041312|ref|YP_001540564.1| - 1.5e-11 43.9 2.6 0.00028 20.1 0.0 3.6 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|159041312|ref|YP_001540564.1| - 4.2e-07 29.2 3.2 4.2e-07 29.2 2.2 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159041312|ref|YP_001540564.1| - 5.8e-06 26.0 7.5 9.7e-06 25.3 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|159041312|ref|YP_001540564.1| - 6.6e-06 26.9 2.6 0.05 14.4 0.0 3.2 2 2 0 2 2 2 2 AAA domain Fer4_6 PF12837.2 gi|159041312|ref|YP_001540564.1| - 6.9e-05 22.5 12.8 0.0014 18.4 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.24 gi|159041312|ref|YP_001540564.1| - 8.5e-05 22.7 0.2 0.08 13.1 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|159041312|ref|YP_001540564.1| - 0.0002 20.8 0.6 0.35 10.2 0.0 3.4 3 1 0 3 3 3 1 AAA domain RecA PF00154.16 gi|159041312|ref|YP_001540564.1| - 0.00033 19.8 0.2 0.0059 15.7 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_18 PF13238.1 gi|159041312|ref|YP_001540564.1| - 0.0011 19.3 0.1 2.9 8.2 0.0 3.0 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.1 gi|159041312|ref|YP_001540564.1| - 0.002 17.8 9.8 0.0054 16.4 7.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_15 PF13175.1 gi|159041312|ref|YP_001540564.1| - 0.0021 17.1 0.0 0.2 10.6 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain DUF258 PF03193.11 gi|159041312|ref|YP_001540564.1| - 0.0024 17.0 0.0 1 8.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|159041312|ref|YP_001540564.1| - 0.0025 17.5 0.6 0.29 10.8 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|159041312|ref|YP_001540564.1| - 0.004 16.7 2.2 0.074 12.6 0.0 2.9 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 RuvB_N PF05496.7 gi|159041312|ref|YP_001540564.1| - 0.0048 15.9 0.2 1 8.3 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_23 PF13476.1 gi|159041312|ref|YP_001540564.1| - 0.0055 17.0 0.3 3.9 7.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|159041312|ref|YP_001540564.1| - 0.007 16.2 0.2 0.27 11.1 0.0 3.2 2 2 0 2 2 2 1 AAA domain Fer4_7 PF12838.2 gi|159041312|ref|YP_001540564.1| - 0.012 15.9 10.7 0.014 15.7 2.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041312|ref|YP_001540564.1| - 0.015 15.1 1.0 0.015 15.1 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159041312|ref|YP_001540564.1| - 0.02 15.6 0.3 0.02 15.6 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_14 PF13173.1 gi|159041312|ref|YP_001540564.1| - 0.021 14.7 1.2 6.3 6.7 0.0 3.2 4 0 0 4 4 3 0 AAA domain AAA_16 PF13191.1 gi|159041312|ref|YP_001540564.1| - 0.021 14.7 0.9 0.42 10.5 0.0 2.9 2 2 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|159041312|ref|YP_001540564.1| - 0.028 14.0 0.2 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|159041312|ref|YP_001540564.1| - 0.03 14.2 0.2 14 5.7 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.17 gi|159041312|ref|YP_001540564.1| - 0.061 13.4 0.0 2.6 8.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_22 PF13401.1 gi|159041312|ref|YP_001540564.1| - 0.065 13.3 1.3 1.6 8.9 0.0 3.1 3 1 0 3 3 3 0 AAA domain AAA_29 PF13555.1 gi|159041312|ref|YP_001540564.1| - 0.084 12.4 0.5 11 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Fer4_9 PF13187.1 gi|159041312|ref|YP_001540564.1| - 0.096 12.9 10.2 0.066 13.4 2.1 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain NB-ARC PF00931.17 gi|159041312|ref|YP_001540564.1| - 0.1 11.4 1.8 3.1 6.5 0.1 2.6 2 0 0 2 2 2 0 NB-ARC domain Fer4_4 PF12800.2 gi|159041312|ref|YP_001540564.1| - 0.13 12.7 11.9 0.093 13.1 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|159041312|ref|YP_001540564.1| - 0.15 12.1 8.0 0.3 11.1 5.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041312|ref|YP_001540564.1| - 0.37 11.1 7.4 1.9 8.8 5.1 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain dCMP_cyt_deam_1 PF00383.17 gi|159041314|ref|YP_001540566.1| - 1.6e-16 59.7 0.2 1.9e-16 59.5 0.1 1.0 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|159041314|ref|YP_001540566.1| - 8.7e-07 28.9 0.1 1.3e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|159041314|ref|YP_001540566.1| - 0.048 13.0 0.7 1.2 8.5 0.0 2.1 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases Sugar_tr PF00083.19 gi|159041315|ref|YP_001540567.1| - 1.7e-09 36.8 26.3 9.8e-06 24.3 13.5 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041315|ref|YP_001540567.1| - 3.6e-08 32.5 19.7 3.6e-08 32.5 13.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Rib_5-P_isom_A PF06026.9 gi|159041316|ref|YP_001540568.1| - 4.3e-58 195.4 0.0 5.1e-58 195.2 0.0 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|159041316|ref|YP_001540568.1| - 5.9e-05 22.7 0.1 0.0034 17.0 0.0 2.1 2 0 0 2 2 2 2 DeoR C terminal sensor domain Flavoprotein PF02441.14 gi|159041317|ref|YP_001540569.1| - 9.4e-31 106.1 0.0 1.4e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Semialdhyde_dh PF01118.19 gi|159041317|ref|YP_001540569.1| - 0.083 13.2 0.1 0.1 12.9 0.1 1.4 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Pribosyltran PF00156.22 gi|159041318|ref|YP_001540570.1| - 5.6e-26 90.7 0.7 9e-26 90.0 0.3 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|159041318|ref|YP_001540570.1| - 0.00064 18.9 0.1 0.00082 18.6 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF309 PF03745.9 gi|159041319|ref|YP_001540571.1| - 2.7e-16 58.7 0.0 5.1e-16 57.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF309) tRNA-synt_2 PF00152.15 gi|159041320|ref|YP_001540572.1| - 2.7e-83 279.5 0.0 4.1e-83 278.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|159041320|ref|YP_001540572.1| - 1.5e-09 37.5 2.0 2.6e-09 36.7 1.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|159041320|ref|YP_001540572.1| - 4.8e-05 22.6 0.6 0.067 12.3 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) GFO_IDH_MocA PF01408.17 gi|159041321|ref|YP_001540573.1| - 8.4e-30 103.7 0.1 1.4e-29 103.0 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041321|ref|YP_001540573.1| - 0.0048 16.6 0.0 0.02 14.6 0.0 2.2 1 1 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.14 gi|159041321|ref|YP_001540573.1| - 0.011 16.1 0.2 0.028 14.9 0.2 1.7 1 0 0 1 1 1 0 CoA binding domain Semialdhyde_dh PF01118.19 gi|159041321|ref|YP_001540573.1| - 0.12 12.7 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF2204 PF09970.4 gi|159041322|ref|YP_001540574.1| - 3.4e-61 205.8 0.2 3.8e-61 205.7 0.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) AAA PF00004.24 gi|159041324|ref|YP_001540576.1| - 1e-15 58.1 0.0 6.3e-15 55.5 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|159041324|ref|YP_001540576.1| - 2.7e-13 49.8 0.0 1e-10 41.5 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|159041324|ref|YP_001540576.1| - 2.4e-09 37.0 0.0 5.2e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|159041324|ref|YP_001540576.1| - 4.3e-09 36.6 0.0 0.0013 18.9 0.0 2.9 2 1 1 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|159041324|ref|YP_001540576.1| - 1.2e-07 31.0 0.0 1.1e-06 27.8 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|159041324|ref|YP_001540576.1| - 4.1e-07 29.6 0.0 9.7e-07 28.4 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|159041324|ref|YP_001540576.1| - 1e-06 28.6 0.0 1.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041324|ref|YP_001540576.1| - 1.1e-06 28.7 0.0 0.00022 21.2 0.0 2.9 1 1 2 3 3 3 1 AAA ATPase domain AAA_25 PF13481.1 gi|159041324|ref|YP_001540576.1| - 1.7e-05 24.3 0.1 0.00042 19.7 0.1 2.6 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|159041324|ref|YP_001540576.1| - 1.7e-05 23.7 0.0 0.0097 14.6 0.0 2.2 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|159041324|ref|YP_001540576.1| - 2.8e-05 24.4 0.0 0.0003 21.1 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|159041324|ref|YP_001540576.1| - 3.4e-05 24.6 0.0 8.8e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|159041324|ref|YP_001540576.1| - 3.4e-05 23.5 0.0 6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|159041324|ref|YP_001540576.1| - 0.00011 21.8 0.0 0.00026 20.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|159041324|ref|YP_001540576.1| - 0.00017 21.3 0.0 0.12 12.1 0.0 2.5 1 1 1 2 2 2 2 Archaeal ATPase IstB_IS21 PF01695.12 gi|159041324|ref|YP_001540576.1| - 0.00018 20.9 0.0 0.00043 19.7 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|159041324|ref|YP_001540576.1| - 0.00062 19.2 0.1 0.43 9.9 0.0 2.8 2 2 0 3 3 3 1 AAA-like domain AAA_5 PF07728.9 gi|159041324|ref|YP_001540576.1| - 0.00091 18.9 0.1 0.011 15.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|159041324|ref|YP_001540576.1| - 0.0012 17.6 0.1 0.0098 14.6 0.0 2.4 1 1 0 1 1 1 1 ArgK protein DNA_pol3_gamma3 PF12169.3 gi|159041324|ref|YP_001540576.1| - 0.0014 18.4 0.0 0.022 14.5 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase III subunits gamma and tau domain III DEAD PF00270.24 gi|159041324|ref|YP_001540576.1| - 0.0017 17.9 0.1 0.086 12.3 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|159041324|ref|YP_001540576.1| - 0.0024 18.0 0.0 0.0059 16.7 0.0 1.8 1 1 0 1 1 1 1 RNA helicase TIP49 PF06068.8 gi|159041324|ref|YP_001540576.1| - 0.0032 16.2 0.0 0.16 10.6 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_33 PF13671.1 gi|159041324|ref|YP_001540576.1| - 0.0044 16.9 0.0 0.021 14.7 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|159041324|ref|YP_001540576.1| - 0.0048 16.8 0.0 0.016 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|159041324|ref|YP_001540576.1| - 0.0049 16.3 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.16 gi|159041324|ref|YP_001540576.1| - 0.01 14.9 0.0 0.12 11.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Ribosomal_L9_C PF03948.9 gi|159041324|ref|YP_001540576.1| - 0.016 15.2 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain PhoH PF02562.11 gi|159041324|ref|YP_001540576.1| - 0.027 13.7 0.0 4.7 6.3 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein Viral_helicase1 PF01443.13 gi|159041324|ref|YP_001540576.1| - 0.028 13.9 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|159041324|ref|YP_001540576.1| - 0.036 13.6 0.0 0.085 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|159041324|ref|YP_001540576.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.10 gi|159041324|ref|YP_001540576.1| - 0.085 12.5 0.0 0.79 9.4 0.0 2.3 1 1 1 2 2 2 0 NTPase KTI12 PF08433.5 gi|159041324|ref|YP_001540576.1| - 0.088 11.9 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Lactamase_B_2 PF12706.2 gi|159041325|ref|YP_001540577.1| - 1.2e-09 37.9 0.0 2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|159041325|ref|YP_001540577.1| - 2.7e-07 30.4 0.0 4.1e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|159041325|ref|YP_001540577.1| - 3.9e-07 29.9 0.0 1.2e-06 28.3 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Cren7 PF11520.3 gi|159041326|ref|YP_001540578.1| - 1.4e-22 79.0 0.8 1.7e-22 78.8 0.6 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 OMPdecase PF00215.19 gi|159041327|ref|YP_001540579.1| - 3.3e-15 56.1 0.0 4.7e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Methyltransf_6 PF03737.10 gi|159041327|ref|YP_001540579.1| - 0.018 14.8 0.5 0.036 13.9 0.3 1.5 1 1 0 1 1 1 0 Demethylmenaquinone methyltransferase Acylphosphatase PF00708.13 gi|159041328|ref|YP_001540580.1| - 0.073 13.1 0.2 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Acylphosphatase TauE PF01925.14 gi|159041329|ref|YP_001540581.1| - 8.7e-46 156.3 40.6 9.9e-46 156.1 28.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1304 PF06993.7 gi|159041329|ref|YP_001540581.1| - 0.049 13.3 0.1 0.049 13.3 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1304) Glycos_transf_1 PF00534.15 gi|159041330|ref|YP_001540582.1| - 3e-11 43.0 0.0 5.4e-10 38.9 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159041330|ref|YP_001540582.1| - 0.00087 19.5 0.1 0.0014 18.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peripla_BP_2 PF01497.13 gi|159041331|ref|YP_001540583.1| - 5.4e-14 51.9 0.0 8.5e-14 51.2 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein DUF2371 PF10177.4 gi|159041332|ref|YP_001540584.1| - 0.099 12.5 0.1 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) MFS_1 PF07690.11 gi|159041333|ref|YP_001540585.1| - 5.7e-22 77.9 58.6 1.8e-12 46.6 19.2 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159041333|ref|YP_001540585.1| - 1.8e-21 76.2 34.5 3e-16 59.0 8.0 2.7 1 1 1 2 2 2 2 Sugar (and other) transporter SUI1 PF01253.17 gi|159041334|ref|YP_001540586.1| - 5e-21 74.2 0.6 7.3e-21 73.7 0.4 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 DUF1874 PF08960.5 gi|159041334|ref|YP_001540586.1| - 0.038 13.7 1.6 0.083 12.6 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1874) Img2 PF05046.9 gi|159041334|ref|YP_001540586.1| - 0.046 13.9 0.3 0.063 13.5 0.2 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) ExbD PF02472.11 gi|159041334|ref|YP_001540586.1| - 0.11 12.5 0.5 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 Biopolymer transport protein ExbD/TolR EF1_GNE PF00736.14 gi|159041334|ref|YP_001540586.1| - 0.16 11.6 1.2 0.37 10.5 0.1 1.9 2 0 0 2 2 2 0 EF-1 guanine nucleotide exchange domain ABC_tran PF00005.22 gi|159041336|ref|YP_001540588.1| - 1.8e-25 89.8 0.0 2.9e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041336|ref|YP_001540588.1| - 1.1e-11 45.2 0.2 2.9e-05 24.1 0.0 2.5 2 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|159041336|ref|YP_001540588.1| - 0.00023 21.5 0.0 0.00041 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|159041336|ref|YP_001540588.1| - 0.00023 20.3 0.0 0.2 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|159041336|ref|YP_001540588.1| - 0.00034 20.0 0.0 0.00066 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|159041336|ref|YP_001540588.1| - 0.0011 18.4 0.2 0.0022 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159041336|ref|YP_001540588.1| - 0.002 17.4 0.1 0.77 8.9 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|159041336|ref|YP_001540588.1| - 0.0021 17.5 0.1 0.004 16.6 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.24 gi|159041336|ref|YP_001540588.1| - 0.0024 18.0 0.0 0.02 15.1 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|159041336|ref|YP_001540588.1| - 0.0033 17.1 0.0 0.01 15.5 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|159041336|ref|YP_001540588.1| - 0.0033 17.0 0.0 0.0061 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|159041336|ref|YP_001540588.1| - 0.0042 17.9 1.7 0.035 14.9 1.2 2.6 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|159041336|ref|YP_001540588.1| - 0.0044 16.6 0.1 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|159041336|ref|YP_001540588.1| - 0.0063 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|159041336|ref|YP_001540588.1| - 0.0075 15.9 0.1 0.024 14.3 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|159041336|ref|YP_001540588.1| - 0.0087 15.9 0.2 0.028 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|159041336|ref|YP_001540588.1| - 0.014 15.2 0.0 0.13 12.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|159041336|ref|YP_001540588.1| - 0.015 14.4 0.1 0.14 11.2 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|159041336|ref|YP_001540588.1| - 0.019 15.0 0.1 0.077 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|159041336|ref|YP_001540588.1| - 0.023 14.6 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|159041336|ref|YP_001540588.1| - 0.024 13.8 0.0 0.037 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|159041336|ref|YP_001540588.1| - 0.046 13.3 0.1 0.086 12.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|159041336|ref|YP_001540588.1| - 0.047 13.3 0.1 0.52 10.0 0.0 2.6 3 1 0 3 3 3 0 NTPase cobW PF02492.14 gi|159041336|ref|YP_001540588.1| - 0.081 12.3 0.1 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|159041336|ref|YP_001540588.1| - 0.09 12.1 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 MutS domain V DUF3584 PF12128.3 gi|159041336|ref|YP_001540588.1| - 0.2 8.9 0.1 0.28 8.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.17 gi|159041336|ref|YP_001540588.1| - 0.22 10.3 0.4 0.44 9.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_18 PF13238.1 gi|159041336|ref|YP_001540588.1| - 0.27 11.5 1.3 1.9 8.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|159041337|ref|YP_001540589.1| - 3.7e-15 55.6 32.1 2.3e-14 53.0 17.7 2.1 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|159041337|ref|YP_001540589.1| - 2.3e-10 40.0 26.5 2.3e-10 40.0 18.4 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein Arginosuc_synth PF00764.14 gi|159041338|ref|YP_001540590.1| - 1.1e-134 449.3 0.0 1.3e-134 449.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase PolyA_pol_RNAbd PF12627.2 gi|159041338|ref|YP_001540590.1| - 0.021 14.3 0.0 0.046 13.2 0.0 1.6 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A Lyase_1 PF00206.15 gi|159041339|ref|YP_001540591.1| - 2.3e-36 125.5 0.0 3.6e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|159041339|ref|YP_001540591.1| - 0.02 14.9 0.0 0.068 13.2 0.0 1.9 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal Aminotran_3 PF00202.16 gi|159041340|ref|YP_001540592.1| - 7.4e-97 324.2 0.1 8.8e-97 323.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Alba PF01918.16 gi|159041340|ref|YP_001540592.1| - 0.037 13.6 0.5 0.48 10.0 0.0 2.5 2 0 0 2 2 2 0 Alba Aminotran_5 PF00266.14 gi|159041340|ref|YP_001540592.1| - 0.054 12.2 0.0 0.076 11.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V SfsA PF03749.8 gi|159041341|ref|YP_001540593.1| - 1.1e-53 181.9 0.0 1.3e-53 181.7 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF91 PF01939.11 gi|159041341|ref|YP_001540593.1| - 0.0037 16.4 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 MacB_PCD PF12704.2 gi|159041343|ref|YP_001540595.1| - 5.5e-25 88.3 2.8 5.5e-25 88.3 2.0 2.6 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|159041343|ref|YP_001540595.1| - 3.9e-17 62.1 14.7 3.9e-17 62.1 10.2 2.9 3 0 0 3 3 3 2 FtsX-like permease family DUF348 PF03990.9 gi|159041343|ref|YP_001540595.1| - 0.005 16.3 0.4 0.86 9.2 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF348) CARDB PF07705.6 gi|159041344|ref|YP_001540596.1| - 5.9e-08 32.6 24.6 7.1e-05 22.8 1.2 6.3 5 1 1 6 6 6 3 CARDB Transglut_C PF00927.17 gi|159041344|ref|YP_001540596.1| - 0.00013 22.0 9.5 0.17 11.9 0.0 6.1 6 1 0 6 6 6 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|159041344|ref|YP_001540596.1| - 0.00037 20.4 4.0 0.45 10.6 0.0 5.1 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Alpha_adaptinC2 PF02883.15 gi|159041344|ref|YP_001540596.1| - 0.014 15.6 5.7 20 5.5 0.0 5.4 5 0 0 5 5 5 0 Adaptin C-terminal domain DUF11 PF01345.13 gi|159041344|ref|YP_001540596.1| - 0.018 15.0 1.7 0.018 15.0 1.2 4.6 5 0 0 5 5 5 0 Domain of unknown function DUF11 fn3 PF00041.16 gi|159041344|ref|YP_001540596.1| - 0.02 14.9 1.0 1.7 8.8 0.0 3.7 3 0 0 3 3 3 0 Fibronectin type III domain ABC_tran PF00005.22 gi|159041345|ref|YP_001540597.1| - 2.6e-29 102.2 0.0 3.4e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041345|ref|YP_001540597.1| - 1.3e-14 54.8 0.0 2.3e-07 31.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|159041345|ref|YP_001540597.1| - 1.8e-05 24.5 0.1 0.00035 20.4 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|159041345|ref|YP_001540597.1| - 3.3e-05 23.3 0.1 0.012 15.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159041345|ref|YP_001540597.1| - 3.4e-05 23.1 0.0 0.068 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|159041345|ref|YP_001540597.1| - 0.0002 20.9 0.1 0.13 11.7 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|159041345|ref|YP_001540597.1| - 0.00049 20.2 0.8 0.082 13.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|159041345|ref|YP_001540597.1| - 0.00069 19.6 0.2 0.0011 18.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|159041345|ref|YP_001540597.1| - 0.0026 17.2 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|159041345|ref|YP_001540597.1| - 0.0077 17.0 1.1 0.018 15.8 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|159041345|ref|YP_001540597.1| - 0.01 15.7 0.0 0.023 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|159041345|ref|YP_001540597.1| - 0.024 14.9 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|159041345|ref|YP_001540597.1| - 0.035 12.5 0.0 0.61 8.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|159041345|ref|YP_001540597.1| - 0.076 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|159041345|ref|YP_001540597.1| - 0.078 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|159041345|ref|YP_001540597.1| - 0.08 12.5 0.1 0.25 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|159041345|ref|YP_001540597.1| - 0.081 13.2 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|159041345|ref|YP_001540597.1| - 0.084 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase PhoH PF02562.11 gi|159041345|ref|YP_001540597.1| - 0.1 11.8 0.0 0.4 9.8 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.7 gi|159041345|ref|YP_001540597.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|159041345|ref|YP_001540597.1| - 0.11 12.0 0.7 0.44 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain tRNA_deacylase PF04414.7 gi|159041346|ref|YP_001540598.1| - 1.8e-62 210.2 0.0 2.1e-62 210.0 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase TusA PF01206.12 gi|159041348|ref|YP_001540600.1| - 1.3e-20 72.7 0.1 1.6e-20 72.4 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|159041349|ref|YP_001540601.1| - 7.9e-08 32.2 0.0 8.9e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|159041349|ref|YP_001540601.1| - 2.3e-06 27.6 0.3 9e-06 25.7 0.2 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family KRTDAP PF15200.1 gi|159041349|ref|YP_001540601.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Keratinocyte differentiation-associated Raffinose_syn PF05691.7 gi|159041350|ref|YP_001540602.1| - 0.00043 17.9 0.0 0.14 9.7 0.0 2.3 3 0 0 3 3 3 2 Raffinose synthase or seed imbibition protein Sip1 SBP_bac_5 PF00496.17 gi|159041351|ref|YP_001540603.1| - 1e-23 83.8 14.8 2e-23 82.8 10.2 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041351|ref|YP_001540603.1| - 0.004 16.8 8.6 0.0059 16.2 6.0 1.2 1 0 0 1 1 1 1 Rifin/stevor family HTH_10 PF04967.7 gi|159041352|ref|YP_001540604.1| - 1.5e-14 53.2 0.1 2.8e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|159041352|ref|YP_001540604.1| - 0.0012 18.4 0.0 0.0034 17.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|159041352|ref|YP_001540604.1| - 0.015 14.6 1.5 0.16 11.3 0.1 2.8 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|159041352|ref|YP_001540604.1| - 0.044 13.3 0.0 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|159041352|ref|YP_001540604.1| - 0.084 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3116 PF11313.3 gi|159041352|ref|YP_001540604.1| - 0.085 12.4 0.1 0.29 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) AhpC-TSA PF00578.16 gi|159041353|ref|YP_001540605.1| - 5.4e-33 113.3 0.0 1e-32 112.4 0.0 1.4 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|159041353|ref|YP_001540605.1| - 2.2e-15 56.4 0.0 3e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|159041353|ref|YP_001540605.1| - 8.3e-09 34.9 0.1 1.5e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF1641 PF07849.6 gi|159041354|ref|YP_001540606.1| - 7.6e-15 54.2 0.2 1.7e-14 53.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) CBS PF00571.23 gi|159041354|ref|YP_001540606.1| - 0.063 13.0 0.0 0.18 11.6 0.0 1.9 1 0 0 1 1 1 0 CBS domain Pyr_redox_2 PF07992.9 gi|159041355|ref|YP_001540607.1| - 2.5e-10 40.5 0.0 5.4e-10 39.4 0.0 1.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159041355|ref|YP_001540607.1| - 1.6e-08 34.8 0.5 0.00042 20.6 0.0 3.1 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|159041355|ref|YP_001540607.1| - 0.021 13.7 0.2 5.1 5.9 0.1 2.7 2 1 1 3 3 3 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|159041355|ref|YP_001540607.1| - 0.054 12.1 0.0 0.094 11.3 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|159041355|ref|YP_001540607.1| - 0.092 12.5 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding PEP_mutase PF13714.1 gi|159041356|ref|YP_001540608.1| - 3.9e-60 203.0 0.2 4.6e-60 202.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|159041356|ref|YP_001540608.1| - 1.7e-16 59.5 0.3 2.5e-16 58.9 0.2 1.3 1 0 0 1 1 1 1 Isocitrate lyase family ThiG PF05690.9 gi|159041356|ref|YP_001540608.1| - 0.025 13.6 0.0 6.2 5.8 0.0 2.8 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG Amidohydro_1 PF01979.15 gi|159041357|ref|YP_001540609.1| - 4.5e-11 42.9 0.0 9.7e-11 41.8 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|159041357|ref|YP_001540609.1| - 2.1e-09 37.7 0.0 3.3e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|159041357|ref|YP_001540609.1| - 4.7e-05 23.1 0.0 0.00017 21.3 0.0 2.0 1 0 0 1 1 1 1 Amidohydrolase TPP_enzyme_C PF02775.16 gi|159041358|ref|YP_001540610.1| - 2.6e-32 111.5 0.9 6.1e-32 110.3 0.0 2.0 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|159041358|ref|YP_001540610.1| - 3.5e-14 52.4 1.7 1.4e-13 50.5 1.2 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Glyco_hydro_79n PF03662.9 gi|159041358|ref|YP_001540610.1| - 0.17 10.4 0.2 0.36 9.4 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 79, N-terminal domain Prenyltransf PF01255.14 gi|159041359|ref|YP_001540611.1| - 3e-60 203.1 0.0 3.5e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase RNA_POL_M_15KD PF02150.11 gi|159041360|ref|YP_001540612.1| - 1.4e-06 27.8 1.7 1.4e-06 27.8 1.2 1.9 2 0 0 2 2 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|159041360|ref|YP_001540612.1| - 4e-06 26.2 1.7 6.5e-05 22.3 1.6 2.1 1 1 1 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|159041360|ref|YP_001540612.1| - 5.1e-05 22.6 4.3 0.042 13.3 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.1 gi|159041360|ref|YP_001540612.1| - 5.3e-05 22.3 0.9 9.1e-05 21.5 0.6 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|159041360|ref|YP_001540612.1| - 6.3e-05 22.0 6.4 0.00024 20.2 4.4 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|159041360|ref|YP_001540612.1| - 0.00015 21.5 1.5 0.00022 20.9 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|159041360|ref|YP_001540612.1| - 0.00041 19.9 1.8 0.49 10.1 0.1 2.5 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|159041360|ref|YP_001540612.1| - 0.00056 19.7 2.8 0.0008 19.2 1.9 1.4 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) RNHCP PF12647.2 gi|159041360|ref|YP_001540612.1| - 0.0014 18.3 0.4 0.0018 18.0 0.3 1.3 1 1 0 1 1 1 1 RNHCP domain Lar_restr_allev PF14354.1 gi|159041360|ref|YP_001540612.1| - 0.0016 18.6 0.6 0.0027 17.9 0.4 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar IBR PF01485.16 gi|159041360|ref|YP_001540612.1| - 0.0037 17.1 1.7 0.0065 16.3 1.2 1.4 1 0 0 1 1 1 1 IBR domain Nudix_N_2 PF14803.1 gi|159041360|ref|YP_001540612.1| - 0.0044 16.6 1.5 0.26 11.0 0.1 2.8 3 0 0 3 3 3 1 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|159041360|ref|YP_001540612.1| - 0.005 16.3 6.4 0.34 10.4 0.1 2.2 1 1 1 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|159041360|ref|YP_001540612.1| - 0.0063 16.5 5.4 0.73 9.9 0.5 2.3 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|159041360|ref|YP_001540612.1| - 0.0095 15.8 2.1 0.028 14.3 1.4 1.8 1 1 0 1 1 1 1 Zinc ribbon domain zf-tcix PF14952.1 gi|159041360|ref|YP_001540612.1| - 0.0096 15.2 4.3 0.73 9.2 0.3 2.4 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding DUF1985 PF09331.6 gi|159041360|ref|YP_001540612.1| - 0.0097 15.7 0.7 0.012 15.4 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) Zn_ribbon_recom PF13408.1 gi|159041360|ref|YP_001540612.1| - 0.015 15.5 5.3 0.043 14.0 3.7 2.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159041360|ref|YP_001540612.1| - 0.025 14.2 0.9 0.025 14.2 0.6 1.8 1 1 0 2 2 2 0 Putative transposase DNA-binding domain Cys_rich_CPCC PF14206.1 gi|159041360|ref|YP_001540612.1| - 0.026 14.0 0.3 0.04 13.4 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC Vel1p PF10339.4 gi|159041360|ref|YP_001540612.1| - 0.044 12.9 0.0 0.052 12.7 0.0 1.1 1 0 0 1 1 1 0 Yeast-specific zinc responsive FYDLN_acid PF09538.5 gi|159041360|ref|YP_001540612.1| - 0.048 14.2 6.7 0.13 12.8 4.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HypA PF01155.14 gi|159041360|ref|YP_001540612.1| - 0.05 13.2 1.1 0.14 11.8 0.7 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|159041360|ref|YP_001540612.1| - 0.063 12.9 1.8 1.8 8.3 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.7 gi|159041360|ref|YP_001540612.1| - 0.063 12.9 1.6 3.7 7.2 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger PhnA_Zn_Ribbon PF08274.7 gi|159041360|ref|YP_001540612.1| - 0.086 12.6 0.8 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.5 gi|159041360|ref|YP_001540612.1| - 0.096 12.1 3.0 0.67 9.4 2.1 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF1610 PF07754.6 gi|159041360|ref|YP_001540612.1| - 0.096 12.8 7.2 0.93 9.6 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF4541 PF15074.1 gi|159041360|ref|YP_001540612.1| - 0.098 13.2 0.5 0.12 12.8 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4541) GFA PF04828.9 gi|159041360|ref|YP_001540612.1| - 0.15 12.0 1.5 1.7 8.6 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_4 PF13717.1 gi|159041360|ref|YP_001540612.1| - 0.16 11.6 3.4 3.9 7.2 2.2 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|159041360|ref|YP_001540612.1| - 0.19 11.5 4.2 2.2 8.1 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|159041360|ref|YP_001540612.1| - 0.19 11.2 7.6 0.91 9.0 5.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) zinc_ribbon_5 PF13719.1 gi|159041360|ref|YP_001540612.1| - 0.19 11.3 4.0 1.5 8.4 2.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|159041360|ref|YP_001540612.1| - 0.19 11.4 5.7 1.6 8.5 4.3 2.2 2 1 0 2 2 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TFIIS_C PF01096.13 gi|159041360|ref|YP_001540612.1| - 0.21 11.2 3.1 3 7.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) YhfH PF14149.1 gi|159041360|ref|YP_001540612.1| - 0.32 10.8 2.4 4.8 7.0 0.1 2.3 2 0 0 2 2 2 0 YhfH-like protein zf-IS66 PF13005.2 gi|159041360|ref|YP_001540612.1| - 0.37 10.8 0.1 0.37 10.8 0.1 2.8 3 1 0 3 3 2 0 zinc-finger binding domain of transposase IS66 Cys_rich_KTR PF14205.1 gi|159041360|ref|YP_001540612.1| - 0.58 9.6 4.9 7.7 6.0 0.3 2.5 2 1 1 3 3 2 0 Cysteine-rich KTR Zn_Tnp_IS1 PF03811.8 gi|159041360|ref|YP_001540612.1| - 0.68 9.4 3.8 2.5 7.6 0.2 2.2 1 1 1 2 2 2 0 InsA N-terminal domain VP_N-CPKC PF11475.3 gi|159041360|ref|YP_001540612.1| - 0.76 9.3 3.0 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Virion protein N terminal domain DUF3797 PF12677.2 gi|159041360|ref|YP_001540612.1| - 0.91 9.1 6.3 0.83 9.3 0.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-FPG_IleRS PF06827.9 gi|159041360|ref|YP_001540612.1| - 1.2 8.8 4.8 44 3.8 3.4 2.4 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS CpXC PF14353.1 gi|159041360|ref|YP_001540612.1| - 1.5 8.7 6.0 2.6 8.0 1.0 2.7 1 1 1 2 2 2 0 CpXC protein DUF2082 PF09855.4 gi|159041360|ref|YP_001540612.1| - 1.6 8.6 5.9 8.5 6.3 0.6 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TF_Zn_Ribbon PF08271.7 gi|159041360|ref|YP_001540612.1| - 1.7 8.0 7.4 0.9 8.9 2.8 2.4 2 1 0 2 2 1 0 TFIIB zinc-binding DUF2072 PF09845.4 gi|159041360|ref|YP_001540612.1| - 1.8 8.4 6.5 4.5 7.2 4.5 1.6 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) NOB1_Zn_bind PF08772.6 gi|159041360|ref|YP_001540612.1| - 2 8.3 7.1 1.6 8.6 0.6 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC_2 PF13913.1 gi|159041360|ref|YP_001540612.1| - 9.9 5.9 7.2 19 5.0 0.6 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Lactamase_B_2 PF12706.2 gi|159041361|ref|YP_001540613.1| - 8.6e-10 38.4 0.1 5.3e-09 35.8 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|159041361|ref|YP_001540613.1| - 1.5e-05 24.7 0.0 2.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|159041361|ref|YP_001540613.1| - 0.00067 19.3 5.8 0.018 14.6 4.0 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DsrD PF08679.6 gi|159041362|ref|YP_001540614.1| - 0.0033 17.3 0.2 0.0037 17.2 0.1 1.1 1 0 0 1 1 1 1 Dissimilatory sulfite reductase D (DsrD) DUF1495 PF07381.6 gi|159041362|ref|YP_001540614.1| - 0.0042 16.7 0.0 0.005 16.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.1 gi|159041362|ref|YP_001540614.1| - 0.011 15.1 0.2 0.015 14.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3253 PF11625.3 gi|159041362|ref|YP_001540614.1| - 0.012 15.4 0.1 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) FaeA PF04703.7 gi|159041362|ref|YP_001540614.1| - 0.021 14.9 0.1 0.031 14.4 0.1 1.3 1 1 0 1 1 1 0 FaeA-like protein RuvB_C PF05491.8 gi|159041362|ref|YP_001540614.1| - 0.023 14.3 0.1 0.028 14.0 0.1 1.1 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus z-alpha PF02295.12 gi|159041362|ref|YP_001540614.1| - 0.025 14.3 0.2 0.029 14.1 0.1 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain TrmB PF01978.14 gi|159041362|ref|YP_001540614.1| - 0.078 12.6 0.4 0.095 12.4 0.3 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SWIRM PF04433.12 gi|159041362|ref|YP_001540614.1| - 0.079 13.0 0.0 0.088 12.9 0.0 1.1 1 0 0 1 1 1 0 SWIRM domain DUF4095 PF13338.1 gi|159041362|ref|YP_001540614.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) PaaX PF07848.7 gi|159041362|ref|YP_001540614.1| - 0.13 12.3 0.1 0.14 12.2 0.1 1.2 1 1 0 1 1 1 0 PaaX-like protein Penicillinase_R PF03965.11 gi|159041362|ref|YP_001540614.1| - 0.14 12.2 0.7 0.16 12.0 0.5 1.1 1 0 0 1 1 1 0 Penicillinase repressor Ribosomal_S25 PF03297.10 gi|159041363|ref|YP_001540615.1| - 6.9e-11 42.1 2.6 8.2e-11 41.8 1.8 1.1 1 0 0 1 1 1 1 S25 ribosomal protein TrmB PF01978.14 gi|159041363|ref|YP_001540615.1| - 0.026 14.2 0.2 0.047 13.3 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB EAP30 PF04157.11 gi|159041363|ref|YP_001540615.1| - 0.033 13.3 0.1 0.064 12.4 0.0 1.4 1 1 0 1 1 1 0 EAP30/Vps36 family DUF977 PF06163.6 gi|159041363|ref|YP_001540615.1| - 0.077 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Pico_P2B PF01552.12 gi|159041364|ref|YP_001540616.1| - 0.088 12.9 0.3 22 5.2 0.0 3.2 3 1 0 3 3 3 0 Picornavirus 2B protein 2-Hacid_dh_C PF02826.14 gi|159041365|ref|YP_001540617.1| - 5.5e-56 188.5 0.2 2e-55 186.6 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|159041365|ref|YP_001540617.1| - 1.4e-29 102.2 0.1 1.8e-29 101.8 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|159041365|ref|YP_001540617.1| - 7.8e-07 29.0 0.1 1.8e-06 27.9 0.0 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|159041365|ref|YP_001540617.1| - 0.00037 20.3 0.1 0.00084 19.2 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|159041365|ref|YP_001540617.1| - 0.00073 18.9 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|159041365|ref|YP_001540617.1| - 0.0024 18.2 0.2 0.04 14.3 0.0 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.19 gi|159041365|ref|YP_001540617.1| - 0.0096 15.8 0.1 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|159041365|ref|YP_001540617.1| - 0.034 13.6 0.1 0.078 12.5 0.1 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF2258 PF10015.4 gi|159041365|ref|YP_001540617.1| - 0.059 13.1 0.1 0.2 11.4 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2258) Resolvase PF00239.16 gi|159041365|ref|YP_001540617.1| - 0.061 13.1 0.5 0.74 9.6 0.1 2.6 2 1 0 2 2 2 0 Resolvase, N terminal domain ELFV_dehydrog PF00208.16 gi|159041365|ref|YP_001540617.1| - 0.15 11.6 0.2 0.49 9.9 0.0 2.0 3 0 0 3 3 3 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aminotran_5 PF00266.14 gi|159041366|ref|YP_001540618.1| - 2.5e-30 105.4 0.0 3.3e-30 105.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|159041366|ref|YP_001540618.1| - 0.002 16.5 0.1 0.0027 16.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HhH-GPD PF00730.20 gi|159041367|ref|YP_001540619.1| - 0.034 14.4 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HTH_11 PF08279.7 gi|159041368|ref|YP_001540620.1| - 0.00035 20.1 0.1 0.002 17.7 0.0 2.1 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|159041368|ref|YP_001540620.1| - 0.00049 19.7 0.0 0.0012 18.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|159041368|ref|YP_001540620.1| - 0.0028 17.7 0.0 0.0074 16.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3489 PF11994.3 gi|159041368|ref|YP_001540620.1| - 0.0041 17.0 0.0 0.0066 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) HTH_24 PF13412.1 gi|159041368|ref|YP_001540620.1| - 0.0097 15.2 0.7 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|159041368|ref|YP_001540620.1| - 0.012 15.4 0.0 1 9.2 0.0 2.8 2 1 1 3 3 3 0 Winged helix-turn-helix Cdc6_C PF09079.6 gi|159041368|ref|YP_001540620.1| - 0.015 14.9 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal HTH_DeoR PF08220.7 gi|159041368|ref|YP_001540620.1| - 0.025 14.1 0.0 0.056 12.9 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RPA_C PF08784.6 gi|159041368|ref|YP_001540620.1| - 0.026 14.9 0.0 0.047 14.1 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal Rrf2 PF02082.15 gi|159041368|ref|YP_001540620.1| - 0.026 14.6 0.0 0.062 13.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator TP_methylase PF00590.15 gi|159041368|ref|YP_001540620.1| - 0.033 13.8 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases PaaX PF07848.7 gi|159041368|ref|YP_001540620.1| - 0.034 14.1 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_27 PF13463.1 gi|159041368|ref|YP_001540620.1| - 0.041 14.2 0.0 0.085 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|159041368|ref|YP_001540620.1| - 0.043 13.2 0.0 0.097 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|159041368|ref|YP_001540620.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator DDRGK PF09756.4 gi|159041368|ref|YP_001540620.1| - 0.25 10.7 1.4 0.37 10.1 0.1 1.9 3 0 0 3 3 3 0 DDRGK domain HIT PF01230.18 gi|159041369|ref|YP_001540621.1| - 0.0025 18.2 0.1 0.0043 17.5 0.1 1.4 1 1 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|159041369|ref|YP_001540621.1| - 0.052 13.2 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 TFIIB PF00382.14 gi|159041370|ref|YP_001540622.1| - 3e-39 132.6 2.0 3.4e-19 68.4 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|159041370|ref|YP_001540622.1| - 4.4e-17 61.1 0.2 6.9e-17 60.4 0.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|159041370|ref|YP_001540622.1| - 0.00014 21.1 0.8 0.00027 20.2 0.6 1.5 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Cyclin_N PF00134.18 gi|159041370|ref|YP_001540622.1| - 0.00019 20.9 0.3 0.0037 16.8 0.1 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain Sigma70_r4 PF04545.11 gi|159041370|ref|YP_001540622.1| - 0.00019 20.6 0.2 0.0058 15.9 0.1 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 RRN7 PF11781.3 gi|159041370|ref|YP_001540622.1| - 0.0025 17.3 0.8 0.0044 16.4 0.6 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 RNA_POL_M_15KD PF02150.11 gi|159041370|ref|YP_001540622.1| - 0.0039 16.8 0.1 0.0077 15.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|159041370|ref|YP_001540622.1| - 0.0052 15.9 0.3 0.0088 15.2 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|159041370|ref|YP_001540622.1| - 0.0055 16.2 0.5 0.011 15.2 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|159041370|ref|YP_001540622.1| - 0.0055 16.9 0.2 0.013 15.8 0.2 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar Coronavirus_5 PF05528.6 gi|159041370|ref|YP_001540622.1| - 0.0085 15.8 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 Coronavirus gene 5 protein HTH_11 PF08279.7 gi|159041370|ref|YP_001540622.1| - 0.012 15.2 0.2 0.045 13.4 0.1 2.0 1 0 0 1 1 1 0 HTH domain zf-NADH-PPase PF09297.6 gi|159041370|ref|YP_001540622.1| - 0.012 15.1 1.2 0.35 10.4 0.0 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Rrf2 PF02082.15 gi|159041370|ref|YP_001540622.1| - 0.029 14.4 0.8 12 6.0 0.1 3.6 3 1 1 4 4 3 0 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|159041370|ref|YP_001540622.1| - 0.034 13.5 0.3 0.2 11.1 0.2 2.3 1 1 1 2 2 2 0 Sigma-70, region 4 zinc_ribbon_5 PF13719.1 gi|159041370|ref|YP_001540622.1| - 0.035 13.6 0.3 0.55 9.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041370|ref|YP_001540622.1| - 0.039 13.6 0.3 0.64 9.7 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HTH_Tnp_ISL3 PF13542.1 gi|159041370|ref|YP_001540622.1| - 0.041 13.0 0.2 1.5 8.0 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 OrfB_Zn_ribbon PF07282.6 gi|159041370|ref|YP_001540622.1| - 0.048 13.3 0.1 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_AsnC-type PF13404.1 gi|159041370|ref|YP_001540622.1| - 0.055 13.0 1.0 0.24 10.9 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Cyclin_C PF02984.14 gi|159041370|ref|YP_001540622.1| - 0.057 13.3 0.3 20 5.1 0.0 2.8 3 0 0 3 3 3 0 Cyclin, C-terminal domain DZR PF12773.2 gi|159041370|ref|YP_001540622.1| - 0.08 12.7 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon HTH_23 PF13384.1 gi|159041370|ref|YP_001540622.1| - 0.12 12.1 1.5 1.3 8.7 0.1 3.3 3 1 0 3 3 3 0 Homeodomain-like domain UPF0547 PF10571.4 gi|159041370|ref|YP_001540622.1| - 0.45 10.2 4.2 1.7 8.3 2.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Thioredoxin_8 PF13905.1 gi|159041371|ref|YP_001540623.1| - 0.017 15.2 0.0 0.019 15.0 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|159041371|ref|YP_001540623.1| - 0.055 13.0 0.4 0.074 12.6 0.0 1.4 2 0 0 2 2 2 0 Thioredoxin KASH PF10541.4 gi|159041372|ref|YP_001540624.1| - 0.67 9.8 5.0 0.091 12.6 0.6 1.7 2 0 0 2 2 2 0 Nuclear envelope localisation domain OAD_gamma PF04277.8 gi|159041372|ref|YP_001540624.1| - 4.8 7.6 6.7 2.1 8.7 0.3 2.2 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF1056 PF06341.6 gi|159041372|ref|YP_001540624.1| - 5.4 7.1 7.6 2.5 8.1 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1056) Chlorovi_GP_rpt PF06598.6 gi|159041372|ref|YP_001540624.1| - 6.1 6.7 7.9 0.56 10.0 0.2 3.0 3 2 0 3 3 3 0 Chlorovirus glycoprotein repeat SBP_bac_5 PF00496.17 gi|159041373|ref|YP_001540625.1| - 5.1e-07 28.8 24.2 7.9e-05 21.6 5.2 5.0 4 1 0 4 4 4 3 Bacterial extracellular solute-binding proteins, family 5 Middle Chromo PF00385.19 gi|159041373|ref|YP_001540625.1| - 0.056 13.1 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain BPD_transp_1 PF00528.17 gi|159041374|ref|YP_001540626.1| - 6.3e-26 91.0 18.5 6.3e-26 91.0 12.8 2.4 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component TarH PF02203.10 gi|159041374|ref|YP_001540626.1| - 0.15 11.8 0.9 0.29 10.9 0.7 1.5 1 0 0 1 1 1 0 Tar ligand binding domain homologue BPD_transp_1 PF00528.17 gi|159041375|ref|YP_001540627.1| - 2.4e-18 66.3 18.5 2.4e-18 66.3 12.8 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|159041376|ref|YP_001540628.1| - 9.3e-28 97.2 0.0 1.3e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|159041376|ref|YP_001540628.1| - 5.9e-22 77.7 0.2 1.3e-21 76.6 0.1 1.7 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|159041376|ref|YP_001540628.1| - 9.2e-11 42.2 0.3 5.8e-07 29.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159041376|ref|YP_001540628.1| - 1.2e-06 27.9 0.2 0.00096 18.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|159041376|ref|YP_001540628.1| - 5.3e-06 26.0 0.1 0.008 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|159041376|ref|YP_001540628.1| - 1.4e-05 25.2 0.5 0.00037 20.6 0.4 2.3 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|159041376|ref|YP_001540628.1| - 9.3e-05 22.3 0.0 0.00017 21.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|159041376|ref|YP_001540628.1| - 0.0002 21.3 0.0 0.00036 20.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|159041376|ref|YP_001540628.1| - 0.00022 20.3 0.2 0.083 11.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|159041376|ref|YP_001540628.1| - 0.00033 20.9 0.0 0.0013 19.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|159041376|ref|YP_001540628.1| - 0.00043 19.7 0.2 0.00083 18.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|159041376|ref|YP_001540628.1| - 0.00045 19.9 0.1 0.00096 18.8 0.0 1.6 2 0 0 2 2 1 1 NACHT domain ABC_ATPase PF09818.4 gi|159041376|ref|YP_001540628.1| - 0.00064 18.4 0.2 0.088 11.3 0.0 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|159041376|ref|YP_001540628.1| - 0.001 19.4 0.1 0.0016 18.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|159041376|ref|YP_001540628.1| - 0.0011 18.3 0.1 0.0047 16.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|159041376|ref|YP_001540628.1| - 0.0017 17.5 0.1 0.0029 16.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|159041376|ref|YP_001540628.1| - 0.003 16.1 0.1 0.83 8.0 0.0 2.0 2 0 0 2 2 2 2 AAA domain DEAD PF00270.24 gi|159041376|ref|YP_001540628.1| - 0.0037 16.7 0.0 0.0081 15.6 0.0 1.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|159041376|ref|YP_001540628.1| - 0.005 17.6 0.0 0.0093 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|159041376|ref|YP_001540628.1| - 0.0056 15.5 0.1 0.011 14.5 0.0 1.5 2 0 0 2 2 2 1 NB-ARC domain SbcCD_C PF13558.1 gi|159041376|ref|YP_001540628.1| - 0.0058 16.5 0.0 0.016 15.0 0.0 1.8 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit APS_kinase PF01583.15 gi|159041376|ref|YP_001540628.1| - 0.0071 16.0 0.0 0.11 12.1 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase ATP-synt_ab PF00006.20 gi|159041376|ref|YP_001540628.1| - 0.0092 15.5 0.0 0.0095 15.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|159041376|ref|YP_001540628.1| - 0.0094 15.4 0.1 0.023 14.1 0.0 1.6 2 0 0 2 2 1 1 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|159041376|ref|YP_001540628.1| - 0.0094 15.5 0.0 0.022 14.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.21 gi|159041376|ref|YP_001540628.1| - 0.011 15.1 0.1 0.029 13.8 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|159041376|ref|YP_001540628.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|159041376|ref|YP_001540628.1| - 0.012 14.4 0.1 0.02 13.8 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|159041376|ref|YP_001540628.1| - 0.015 15.3 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|159041376|ref|YP_001540628.1| - 0.018 14.4 0.1 0.058 12.8 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein MobB PF03205.9 gi|159041376|ref|YP_001540628.1| - 0.023 14.3 0.1 0.045 13.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|159041376|ref|YP_001540628.1| - 0.038 13.0 0.7 0.15 11.1 0.1 2.1 1 1 0 2 2 2 0 KaiC RNA_helicase PF00910.17 gi|159041376|ref|YP_001540628.1| - 0.06 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|159041376|ref|YP_001540628.1| - 0.077 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|159041376|ref|YP_001540628.1| - 0.077 13.1 0.1 0.27 11.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.9 gi|159041376|ref|YP_001540628.1| - 0.081 11.8 0.0 0.25 10.3 0.0 1.5 1 1 1 2 2 2 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|159041376|ref|YP_001540628.1| - 0.093 12.4 0.1 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|159041376|ref|YP_001540628.1| - 0.12 12.2 0.0 1.1 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|159041376|ref|YP_001540628.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|159041376|ref|YP_001540628.1| - 0.16 11.7 0.2 0.34 10.7 0.0 1.5 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit GATase_3 PF07685.9 gi|159041377|ref|YP_001540629.1| - 3.1e-28 98.3 0.0 4.5e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|159041377|ref|YP_001540629.1| - 2e-18 66.4 0.0 5e-18 65.2 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|159041377|ref|YP_001540629.1| - 4.4e-11 42.7 0.8 1.7e-07 31.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain Peptidase_S51 PF03575.12 gi|159041377|ref|YP_001540629.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S51 Shikimate_dh_N PF08501.6 gi|159041378|ref|YP_001540630.1| - 2.9e-24 84.9 0.0 6.6e-24 83.7 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|159041378|ref|YP_001540630.1| - 2.5e-12 47.0 0.0 4.4e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|159041378|ref|YP_001540630.1| - 0.018 14.0 0.6 0.062 12.2 0.2 2.1 2 1 0 2 2 2 0 Saccharopine dehydrogenase DUF3466 PF11949.3 gi|159041378|ref|YP_001540630.1| - 0.1 11.1 0.2 0.13 10.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3466) DHQ_synthase PF01761.15 gi|159041379|ref|YP_001540631.1| - 3.3e-80 268.7 0.5 4.1e-80 268.4 0.3 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|159041379|ref|YP_001540631.1| - 3.3e-07 29.8 5.0 4.1e-06 26.2 3.4 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|159041379|ref|YP_001540631.1| - 0.00033 19.4 3.0 0.0022 16.7 0.2 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.15 gi|159041380|ref|YP_001540632.1| - 1.5e-78 263.2 0.0 1.8e-78 262.9 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|159041380|ref|YP_001540632.1| - 2e-10 40.2 0.0 1.7e-07 30.6 0.0 2.1 2 0 0 2 2 2 2 NeuB family GFO_IDH_MocA PF01408.17 gi|159041380|ref|YP_001540632.1| - 0.029 14.9 0.0 0.19 12.2 0.0 2.3 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ComA PF02679.10 gi|159041380|ref|YP_001540632.1| - 0.085 11.8 0.0 1.6 7.6 0.0 2.8 3 1 1 4 4 4 0 (2R)-phospho-3-sulfolactate synthase (ComA) NusG PF02357.14 gi|159041380|ref|YP_001540632.1| - 0.14 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcription termination factor nusG DUF561 PF04481.7 gi|159041380|ref|YP_001540632.1| - 0.15 11.0 0.0 4.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF561) CM_2 PF01817.16 gi|159041381|ref|YP_001540633.1| - 7.2e-17 61.2 0.9 1.9e-16 59.8 0.6 1.8 1 0 0 1 1 1 1 Chorismate mutase type II PDH PF02153.12 gi|159041381|ref|YP_001540633.1| - 5.3e-15 55.0 0.0 7.2e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|159041381|ref|YP_001540633.1| - 0.032 13.9 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Gp_dh_N PF00044.19 gi|159041381|ref|YP_001540633.1| - 0.071 13.0 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Transket_pyr PF02779.19 gi|159041382|ref|YP_001540634.1| - 1.4e-38 132.2 0.0 2.4e-38 131.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_N PF00456.16 gi|159041382|ref|YP_001540634.1| - 3.7e-36 124.5 0.0 7.2e-36 123.6 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transketolase_C PF02780.15 gi|159041382|ref|YP_001540634.1| - 8e-27 93.6 0.1 1.6e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.1 gi|159041382|ref|YP_001540634.1| - 1.6e-12 46.9 0.1 1.3e-09 37.4 0.0 2.6 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|159041382|ref|YP_001540634.1| - 0.00073 19.1 2.3 0.034 13.7 0.1 3.6 3 2 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NTP_transf_3 PF12804.2 gi|159041382|ref|YP_001540634.1| - 0.0092 16.0 0.1 0.36 10.8 0.0 3.0 2 1 1 3 3 3 1 MobA-like NTP transferase domain E1_dh PF00676.15 gi|159041382|ref|YP_001540634.1| - 0.097 11.3 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 Dehydrogenase E1 component Glycos_transf_1 PF00534.15 gi|159041383|ref|YP_001540635.1| - 4.4e-16 58.7 0.0 1.6e-15 56.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159041383|ref|YP_001540635.1| - 5.5e-08 33.0 0.0 1.1e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159041383|ref|YP_001540635.1| - 0.00071 19.7 0.0 0.0021 18.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Nudix_N PF12535.3 gi|159041383|ref|YP_001540635.1| - 0.07 12.6 0.3 0.15 11.5 0.2 1.5 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal DUF3152 PF11350.3 gi|159041383|ref|YP_001540635.1| - 0.16 11.4 0.1 0.35 10.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3152) Topoisom_bac PF01131.15 gi|159041384|ref|YP_001540636.1| - 6.7e-90 301.8 0.2 1.1e-86 291.1 0.0 2.3 1 1 1 2 2 2 2 DNA topoisomerase Toprim PF01751.17 gi|159041384|ref|YP_001540636.1| - 1.1e-20 73.4 0.0 5e-20 71.3 0.0 2.2 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.24 gi|159041384|ref|YP_001540636.1| - 1.1e-12 47.7 0.0 4e-12 45.9 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|159041384|ref|YP_001540636.1| - 4.6e-06 26.3 0.1 0.022 14.6 0.0 3.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|159041384|ref|YP_001540636.1| - 0.00019 21.3 0.0 0.00046 20.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|159041384|ref|YP_001540636.1| - 0.0095 15.3 0.6 0.081 12.3 0.2 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|159041384|ref|YP_001540636.1| - 0.012 15.2 0.1 0.044 13.5 0.1 2.0 1 0 0 1 1 1 0 Part of AAA domain DZR PF12773.2 gi|159041384|ref|YP_001540636.1| - 0.03 14.1 0.7 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 Double zinc ribbon HAD_2 PF13419.1 gi|159041384|ref|YP_001540636.1| - 0.032 14.4 0.0 1.3 9.2 0.0 3.2 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase AAA_30 PF13604.1 gi|159041384|ref|YP_001540636.1| - 0.034 13.7 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Helitron_like_N PF14214.1 gi|159041384|ref|YP_001540636.1| - 0.056 13.1 0.2 2.8 7.6 0.1 2.5 2 0 0 2 2 2 0 Helitron helicase-like domain at N-terminus Prok-RING_1 PF14446.1 gi|159041384|ref|YP_001540636.1| - 0.085 12.6 1.9 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|159041384|ref|YP_001540636.1| - 0.34 10.1 8.7 0.43 9.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|159041384|ref|YP_001540636.1| - 1.2 8.6 3.2 0.93 9.0 0.2 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif UPF0547 PF10571.4 gi|159041384|ref|YP_001540636.1| - 2.2 8.0 4.4 5.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|159041384|ref|YP_001540636.1| - 3.7 7.1 6.8 4.2 6.9 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|159041384|ref|YP_001540636.1| - 5.2 6.3 5.7 8.2 5.7 1.3 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Sulf_transp PF04143.9 gi|159041385|ref|YP_001540637.1| - 8.8e-11 41.6 24.7 1.3e-06 28.3 3.5 5.1 6 0 0 6 6 6 2 Sulphur transport DUF3353 PF11833.3 gi|159041385|ref|YP_001540637.1| - 0.74 9.2 5.3 0.15 11.5 0.3 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3353) DUF4191 PF13829.1 gi|159041385|ref|YP_001540637.1| - 2.6 7.1 4.1 2.1 7.3 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) Rieske PF00355.21 gi|159041386|ref|YP_001540638.1| - 1.6e-11 43.6 0.1 1.8e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|159041386|ref|YP_001540638.1| - 2.5e-06 27.1 0.0 3.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain UDG PF03167.14 gi|159041387|ref|YP_001540639.1| - 9.5e-32 109.5 0.0 1.2e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Metallophos PF00149.23 gi|159041388|ref|YP_001540640.1| - 6.9e-09 35.3 0.3 2.6e-08 33.5 0.2 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|159041388|ref|YP_001540640.1| - 3.3e-08 33.5 0.0 5.4e-08 32.8 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4147 PF13660.1 gi|159041389|ref|YP_001540641.1| - 2e-70 236.6 0.1 3.5e-70 235.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|159041389|ref|YP_001540641.1| - 1.1e-31 109.1 2.7 1.9e-31 108.3 1.9 1.4 1 0 0 1 1 1 1 MOFRL family AA_permease_2 PF13520.1 gi|159041390|ref|YP_001540642.1| - 8.6e-24 83.8 52.6 1.1e-23 83.4 36.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159041390|ref|YP_001540642.1| - 1e-08 34.0 43.7 1.4e-08 33.5 30.3 1.2 1 0 0 1 1 1 1 Amino acid permease DUF89 PF01937.14 gi|159041391|ref|YP_001540643.1| - 2.4e-33 115.3 0.0 2.7e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 YfiO PF13525.1 gi|159041391|ref|YP_001540643.1| - 0.068 12.6 0.1 0.099 12.1 0.0 1.2 1 0 0 1 1 1 0 Outer membrane lipoprotein Cupin_2 PF07883.6 gi|159041392|ref|YP_001540644.1| - 4.7e-16 58.0 0.0 6.1e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|159041392|ref|YP_001540644.1| - 7.8e-08 32.0 0.1 3.4e-07 30.0 0.0 1.8 1 1 1 2 2 2 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|159041392|ref|YP_001540644.1| - 2e-05 24.2 0.0 2.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|159041392|ref|YP_001540644.1| - 5.6e-05 22.6 0.0 8.8e-05 21.9 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|159041392|ref|YP_001540644.1| - 0.0012 18.6 0.0 0.0019 18.0 0.0 1.4 1 1 0 1 1 1 1 ChrR Cupin-like domain DUF1637 PF07847.7 gi|159041392|ref|YP_001540644.1| - 0.0031 16.9 0.0 0.0042 16.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) Ectoine_synth PF06339.7 gi|159041392|ref|YP_001540644.1| - 0.0083 16.0 0.0 0.0084 16.0 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase CENP-C_C PF11699.3 gi|159041392|ref|YP_001540644.1| - 0.048 13.6 0.0 0.09 12.7 0.0 1.5 1 1 0 1 1 1 0 Mif2/CENP-C like Auxin_BP PF02041.11 gi|159041392|ref|YP_001540644.1| - 0.13 11.6 0.0 0.17 11.3 0.0 1.3 1 1 0 1 1 1 0 Auxin binding protein MmgE_PrpD PF03972.9 gi|159041393|ref|YP_001540645.1| - 3.2e-123 411.2 0.0 3.6e-123 411.0 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Sugar_tr PF00083.19 gi|159041394|ref|YP_001540646.1| - 2.8e-35 121.7 31.3 1.5e-27 96.2 9.2 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041394|ref|YP_001540646.1| - 1.9e-31 109.0 53.4 6.1e-27 94.2 23.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Helicase_C PF00271.26 gi|159041395|ref|YP_001540647.1| - 4e-17 61.8 0.1 7.6e-17 60.9 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|159041395|ref|YP_001540647.1| - 3e-12 46.7 0.7 5.1e-08 32.9 0.2 3.2 2 1 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|159041395|ref|YP_001540647.1| - 5.9e-08 32.3 0.0 0.00059 19.3 0.0 2.5 2 1 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|159041395|ref|YP_001540647.1| - 7.5e-06 25.9 0.5 2.2e-05 24.4 0.3 1.8 1 1 0 1 1 1 1 Helicase C-terminal domain SNF2_N PF00176.18 gi|159041395|ref|YP_001540647.1| - 0.02 13.7 0.0 1.2 7.8 0.0 2.3 2 0 0 2 2 2 0 SNF2 family N-terminal domain Intein_splicing PF14890.1 gi|159041395|ref|YP_001540647.1| - 0.021 13.7 0.7 0.095 11.5 0.2 2.2 2 0 0 2 2 2 0 Intein splicing domain DUF2208 PF09973.4 gi|159041396|ref|YP_001540648.1| - 6.9e-30 103.9 7.4 1.3e-29 103.1 5.2 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) zf-ribbon_3 PF13248.1 gi|159041396|ref|YP_001540648.1| - 3e-08 32.6 0.4 4.3e-08 32.0 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159041396|ref|YP_001540648.1| - 1.2e-07 30.9 0.6 1.9e-07 30.3 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|159041396|ref|YP_001540648.1| - 1.4e-05 24.8 0.6 2.3e-05 24.1 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Virul_fac_BrkB PF03631.10 gi|159041396|ref|YP_001540648.1| - 0.00041 19.7 2.5 0.00041 19.7 1.7 1.9 2 0 0 2 2 2 1 Virulence factor BrkB SieB PF14163.1 gi|159041396|ref|YP_001540648.1| - 0.0079 15.7 0.0 0.0079 15.7 0.0 2.4 2 1 0 2 2 1 1 Superinfection exclusion protein B Acetone_carb_G PF08882.6 gi|159041396|ref|YP_001540648.1| - 0.021 14.8 1.3 0.094 12.7 0.4 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Ctr PF04145.10 gi|159041396|ref|YP_001540648.1| - 0.029 14.4 0.7 0.029 14.4 0.5 2.3 2 1 2 4 4 3 0 Ctr copper transporter family TF_Zn_Ribbon PF08271.7 gi|159041396|ref|YP_001540648.1| - 0.037 13.3 0.5 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|159041396|ref|YP_001540648.1| - 0.043 13.5 1.2 0.078 12.6 0.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF4064 PF13273.1 gi|159041396|ref|YP_001540648.1| - 0.052 13.6 2.5 0.092 12.8 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Prok-RING_1 PF14446.1 gi|159041396|ref|YP_001540648.1| - 0.071 12.8 0.2 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2296 PF10058.4 gi|159041396|ref|YP_001540648.1| - 0.14 11.8 0.7 1.3 8.8 0.0 2.4 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF4381 PF14316.1 gi|159041396|ref|YP_001540648.1| - 0.16 12.0 0.2 0.58 10.2 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) ABC2_membrane_4 PF12730.2 gi|159041396|ref|YP_001540648.1| - 0.21 10.7 21.2 0.13 11.4 2.3 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF106 PF01956.11 gi|159041396|ref|YP_001540648.1| - 0.22 11.0 6.5 0.19 11.2 2.9 2.1 1 1 0 1 1 1 0 Integral membrane protein DUF106 DUF164 PF02591.10 gi|159041396|ref|YP_001540648.1| - 0.33 10.8 1.3 12 5.8 0.1 2.5 2 0 0 2 2 2 0 Putative zinc ribbon domain Rubredoxin PF00301.15 gi|159041396|ref|YP_001540648.1| - 0.92 9.4 5.0 6 6.8 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin zf-C2H2_4 PF13894.1 gi|159041396|ref|YP_001540648.1| - 3.4 8.2 5.3 14 6.3 0.3 2.5 1 1 1 2 2 2 0 C2H2-type zinc finger DUF2839 PF10999.3 gi|159041396|ref|YP_001540648.1| - 5.5 7.0 15.7 0.94 9.5 1.6 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2839) PDR_CDR PF06422.7 gi|159041396|ref|YP_001540648.1| - 5.8 6.6 8.4 15 5.2 0.1 3.2 2 1 1 3 3 3 0 CDR ABC transporter zf-C2HC_2 PF13913.1 gi|159041396|ref|YP_001540648.1| - 6.5 6.5 6.9 2.7 7.7 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF1610 PF07754.6 gi|159041396|ref|YP_001540648.1| - 6.7 6.9 8.8 18 5.5 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CxxCxxCC PF03692.10 gi|159041397|ref|YP_001540649.1| - 1.2e-10 41.7 1.1 1.7e-10 41.2 0.8 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain tRNA-synt_1e PF01406.14 gi|159041398|ref|YP_001540650.1| - 1.1e-108 362.9 0.0 1.5e-108 362.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|159041398|ref|YP_001540650.1| - 4.3e-13 49.3 0.2 1.1e-11 44.8 0.0 2.9 3 1 0 3 3 3 1 DALR domain tRNA-synt_1g PF09334.6 gi|159041398|ref|YP_001540650.1| - 2.3e-09 36.3 0.1 4.6e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|159041398|ref|YP_001540650.1| - 5.6e-08 31.2 0.0 1.1e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|159041398|ref|YP_001540650.1| - 4.6e-07 28.8 0.0 0.00011 20.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|159041398|ref|YP_001540650.1| - 0.005 15.7 0.6 0.26 10.0 0.0 3.1 3 1 1 4 4 4 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|159041398|ref|YP_001540650.1| - 0.017 13.8 0.5 0.36 9.4 0.1 2.7 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Cir_Bir_Yir PF06022.6 gi|159041398|ref|YP_001540650.1| - 0.025 13.8 0.7 0.042 13.0 0.5 1.4 1 0 0 1 1 1 0 Plasmodium variant antigen protein Cir/Yir/Bir DUF1899 PF08953.6 gi|159041398|ref|YP_001540650.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1899) FTCD PF02971.9 gi|159041399|ref|YP_001540651.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.3 1 1 0 1 1 1 0 Formiminotransferase domain AsnC_trans_reg PF01037.16 gi|159041401|ref|YP_001540653.1| - 1.1e-17 63.4 0.0 1.9e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|159041401|ref|YP_001540653.1| - 5.6e-13 48.1 1.7 1.1e-12 47.3 1.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|159041401|ref|YP_001540653.1| - 7.3e-12 44.4 2.6 7.3e-12 44.4 1.8 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|159041401|ref|YP_001540653.1| - 1.2e-05 24.9 0.2 0.0027 17.3 0.1 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|159041401|ref|YP_001540653.1| - 0.0012 18.4 0.1 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|159041401|ref|YP_001540653.1| - 0.0028 17.4 0.1 0.0045 16.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|159041401|ref|YP_001540653.1| - 0.0042 16.7 0.4 0.0093 15.6 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|159041401|ref|YP_001540653.1| - 0.0061 16.1 2.1 0.0069 16.0 0.5 1.7 2 0 0 2 2 2 1 HTH domain TFIIE_alpha PF02002.12 gi|159041401|ref|YP_001540653.1| - 0.045 13.2 0.2 0.07 12.6 0.1 1.5 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_DeoR PF08220.7 gi|159041401|ref|YP_001540653.1| - 0.048 13.2 0.1 0.11 11.9 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|159041401|ref|YP_001540653.1| - 0.056 13.2 0.3 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Penicillinase_R PF03965.11 gi|159041401|ref|YP_001540653.1| - 0.072 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor GntR PF00392.16 gi|159041401|ref|YP_001540653.1| - 0.08 12.3 0.5 0.16 11.4 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|159041401|ref|YP_001540653.1| - 0.095 13.0 0.2 0.54 10.6 0.1 2.1 1 1 2 3 3 3 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|159041401|ref|YP_001540653.1| - 0.099 12.2 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DNA_primase_lrg PF04104.9 gi|159041402|ref|YP_001540654.1| - 2.2e-23 82.8 0.0 3.9e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Glyco_hydro_4 PF02056.11 gi|159041403|ref|YP_001540655.1| - 2.6e-45 154.0 0.0 3.5e-45 153.5 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|159041403|ref|YP_001540655.1| - 1.2e-31 110.3 0.0 1.8e-31 109.7 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain OCD_Mu_crystall PF02423.10 gi|159041403|ref|YP_001540655.1| - 2.6e-05 23.1 0.0 0.00026 19.8 0.0 2.0 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family NAD_Gly3P_dh_N PF01210.18 gi|159041403|ref|YP_001540655.1| - 0.00079 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ldh_1_N PF00056.18 gi|159041403|ref|YP_001540655.1| - 0.0027 17.5 0.1 2.3 8.0 0.0 2.3 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain BcrAD_BadFG PF01869.15 gi|159041404|ref|YP_001540656.1| - 1.1e-33 116.6 0.2 1.7e-33 116.0 0.1 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family GARS_A PF01071.14 gi|159041404|ref|YP_001540656.1| - 0.018 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SIS PF01380.17 gi|159041405|ref|YP_001540657.1| - 2.3e-28 98.4 2.1 3.7e-15 55.6 0.6 2.4 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|159041405|ref|YP_001540657.1| - 0.016 14.9 2.2 0.14 11.8 0.0 3.0 2 1 1 3 3 3 0 SIS domain PIG-L PF02585.12 gi|159041406|ref|YP_001540658.1| - 9.7e-27 93.9 0.0 1.3e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase DDE_Tnp_2 PF04693.7 gi|159041406|ref|YP_001540658.1| - 0.03 13.3 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Vps4_C PF09336.5 gi|159041406|ref|YP_001540658.1| - 0.052 13.4 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain AA_permease_2 PF13520.1 gi|159041407|ref|YP_001540659.1| - 2.3e-28 98.9 68.0 3.2e-28 98.4 47.1 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159041407|ref|YP_001540659.1| - 5.4e-15 54.6 65.7 9.4e-15 53.9 45.5 1.3 1 1 0 1 1 1 1 Amino acid permease Metallophos PF00149.23 gi|159041408|ref|YP_001540660.1| - 2.9e-08 33.3 5.1 0.0015 17.9 1.4 2.6 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|159041408|ref|YP_001540660.1| - 0.0002 21.2 0.0 0.0036 17.1 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain GrpB PF04229.9 gi|159041408|ref|YP_001540660.1| - 0.00055 19.7 0.1 0.015 14.9 0.0 2.2 2 0 0 2 2 2 1 GrpB protein UxaC PF02614.9 gi|159041409|ref|YP_001540661.1| - 7.4e-14 51.2 0.0 9.1e-14 50.9 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase DegT_DnrJ_EryC1 PF01041.12 gi|159041410|ref|YP_001540662.1| - 2.8e-109 365.5 0.0 3.5e-109 365.1 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|159041410|ref|YP_001540662.1| - 1.2e-12 47.5 0.0 2.7e-12 46.4 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|159041410|ref|YP_001540662.1| - 1.8e-11 43.5 0.0 4e-11 42.4 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|159041410|ref|YP_001540662.1| - 1.4e-06 27.3 0.0 2.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|159041410|ref|YP_001540662.1| - 5e-05 21.7 0.0 8.2e-05 21.0 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.14 gi|159041410|ref|YP_001540662.1| - 0.07 11.4 0.0 0.1 10.9 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase SelA PF03841.8 gi|159041410|ref|YP_001540662.1| - 0.17 10.5 0.1 0.59 8.8 0.0 1.8 2 1 0 2 2 2 0 L-seryl-tRNA selenium transferase PIG-L PF02585.12 gi|159041411|ref|YP_001540663.1| - 6.4e-23 81.6 0.0 1.2e-22 80.7 0.0 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase DDE_Tnp_2 PF04693.7 gi|159041411|ref|YP_001540663.1| - 0.0094 15.0 0.2 0.018 14.0 0.1 1.5 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 adh_short_C2 PF13561.1 gi|159041412|ref|YP_001540664.1| - 1.2e-27 97.2 0.0 1.4e-27 97.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|159041412|ref|YP_001540664.1| - 2.8e-20 72.9 0.0 3.7e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|159041412|ref|YP_001540664.1| - 8.9e-11 41.7 0.0 1.4e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|159041412|ref|YP_001540664.1| - 2.5e-05 24.3 0.1 3.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|159041412|ref|YP_001540664.1| - 0.043 13.2 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family SinI PF08671.5 gi|159041412|ref|YP_001540664.1| - 0.067 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Anti-repressor SinI FAD_binding_3 PF01494.14 gi|159041413|ref|YP_001540665.1| - 1.4e-13 50.6 0.1 0.0002 20.5 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|159041413|ref|YP_001540665.1| - 0.0011 17.8 0.0 0.051 12.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|159041413|ref|YP_001540665.1| - 0.0081 14.6 0.0 0.21 9.9 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|159041413|ref|YP_001540665.1| - 0.03 14.1 0.1 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|159041413|ref|YP_001540665.1| - 0.034 12.7 0.0 4.2 5.8 0.0 2.4 2 1 0 2 2 2 0 Tryptophan halogenase OrfB_Zn_ribbon PF07282.6 gi|159041414|ref|YP_001540666.1| - 6.3e-19 67.3 0.0 1.1e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Resolvase PF00239.16 gi|159041415|ref|YP_001540667.1| - 3.3e-17 62.6 0.1 4.9e-17 62.1 0.1 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|159041415|ref|YP_001540667.1| - 2.2e-08 34.2 0.1 5.8e-08 32.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|159041415|ref|YP_001540667.1| - 0.019 14.4 0.1 0.042 13.4 0.1 1.5 1 0 0 1 1 1 0 MerR family regulatory protein HTH_Tnp_1 PF01527.15 gi|159041415|ref|YP_001540667.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 Transposase DUF1413 PF07205.6 gi|159041415|ref|YP_001540667.1| - 0.062 12.8 0.1 8.9 5.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1413) HTH_28 PF13518.1 gi|159041415|ref|YP_001540667.1| - 0.13 12.2 0.2 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Cep57_MT_bd PF06657.8 gi|159041415|ref|YP_001540667.1| - 0.14 12.1 0.2 21 5.1 0.0 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF1886 PF09171.5 gi|159041416|ref|YP_001540668.1| - 1.4e-79 266.5 0.0 1.8e-79 266.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) Peptidase_M50 PF02163.17 gi|159041418|ref|YP_001540670.1| - 3.3e-20 71.8 0.9 3.3e-20 71.8 0.6 3.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|159041418|ref|YP_001540670.1| - 1.5e-10 40.7 0.0 3.5e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|159041418|ref|YP_001540670.1| - 5.2e-05 23.3 0.0 0.00029 20.9 0.0 2.1 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) 2-Hacid_dh_C PF02826.14 gi|159041419|ref|YP_001540671.1| - 1.6e-65 219.5 0.0 2.6e-65 218.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|159041419|ref|YP_001540671.1| - 9e-28 96.3 0.1 1.2e-27 96.0 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|159041419|ref|YP_001540671.1| - 6.6e-06 26.0 0.2 0.0001 22.1 0.0 2.5 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|159041419|ref|YP_001540671.1| - 0.0019 18.6 0.0 0.0053 17.1 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|159041419|ref|YP_001540671.1| - 0.0019 18.5 0.0 0.19 12.0 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain IlvN PF07991.7 gi|159041419|ref|YP_001540671.1| - 0.005 16.2 0.0 0.17 11.2 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|159041419|ref|YP_001540671.1| - 0.014 15.1 0.5 0.16 11.6 0.3 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.16 gi|159041419|ref|YP_001540671.1| - 0.028 14.2 0.0 0.076 12.8 0.0 1.8 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Glyco_hydro_12 PF01670.11 gi|159041420|ref|YP_001540672.1| - 1.7e-18 66.8 1.0 2.6e-18 66.2 0.1 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 12 TMEM154 PF15102.1 gi|159041420|ref|YP_001540672.1| - 6.3 6.4 15.2 12 5.5 10.6 1.4 1 0 0 1 1 1 0 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|159041420|ref|YP_001540672.1| - 8 6.0 9.1 11 5.4 6.3 1.1 1 0 0 1 1 1 0 Rifin/stevor family Glyco_hydro_12 PF01670.11 gi|159041421|ref|YP_001540673.1| - 1.7e-06 27.9 2.2 3.9e-06 26.7 1.5 1.6 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Rifin_STEVOR PF02009.11 gi|159041421|ref|YP_001540673.1| - 1 8.9 9.8 1.4 8.4 6.8 1.1 1 0 0 1 1 1 0 Rifin/stevor family MFS_1 PF07690.11 gi|159041422|ref|YP_001540674.1| - 5.2e-28 97.7 83.9 3.4e-26 91.7 37.1 2.6 1 1 2 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159041422|ref|YP_001540674.1| - 5.2e-19 68.1 39.2 4.8e-15 55.0 10.1 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter DUF4220 PF13968.1 gi|159041422|ref|YP_001540674.1| - 0.29 10.1 5.0 0.39 9.7 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4220) Abhydrolase_5 PF12695.2 gi|159041423|ref|YP_001540675.1| - 8.4e-18 64.5 0.0 1.1e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|159041423|ref|YP_001540675.1| - 1.7e-15 57.5 0.0 7.5e-15 55.4 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|159041423|ref|YP_001540675.1| - 2e-10 40.2 0.0 2.5e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|159041423|ref|YP_001540675.1| - 1.1e-09 38.1 0.0 1e-08 35.0 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|159041423|ref|YP_001540675.1| - 5.2e-08 32.5 0.1 0.0019 17.6 0.0 2.5 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Esterase PF00756.15 gi|159041423|ref|YP_001540675.1| - 8e-08 32.0 0.0 1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Lipase_3 PF01764.20 gi|159041423|ref|YP_001540675.1| - 6.4e-05 22.5 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 Lipase (class 3) PGAP1 PF07819.8 gi|159041423|ref|YP_001540675.1| - 7.5e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 1 0 1 1 1 1 PGAP1-like protein Peptidase_S15 PF02129.13 gi|159041423|ref|YP_001540675.1| - 0.00032 20.1 0.0 0.00038 19.9 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S28 PF05577.7 gi|159041423|ref|YP_001540675.1| - 0.00068 18.3 0.0 0.00098 17.8 0.0 1.2 1 0 0 1 1 1 1 Serine carboxypeptidase S28 BAAT_C PF08840.6 gi|159041423|ref|YP_001540675.1| - 0.0019 17.9 0.0 0.0028 17.3 0.0 1.4 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2974 PF11187.3 gi|159041423|ref|YP_001540675.1| - 0.0033 16.8 0.0 0.0038 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) DLH PF01738.13 gi|159041423|ref|YP_001540675.1| - 0.0052 16.0 0.0 0.05 12.8 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|159041423|ref|YP_001540675.1| - 0.0085 16.3 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain DUF2920 PF11144.3 gi|159041423|ref|YP_001540675.1| - 0.0089 15.0 0.0 0.027 13.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) DUF2048 PF09752.4 gi|159041423|ref|YP_001540675.1| - 0.044 12.6 0.0 0.068 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Ser_hydrolase PF06821.8 gi|159041423|ref|YP_001540675.1| - 0.15 11.6 0.0 0.17 11.4 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase Fer4_8 PF13183.1 gi|159041424|ref|YP_001540676.1| - 4.2e-10 39.4 2.6 9.4e-10 38.3 1.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041424|ref|YP_001540676.1| - 1.8e-09 37.7 1.3 6.5e-09 36.0 0.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|159041424|ref|YP_001540676.1| - 1.3e-07 31.5 0.2 5.7e-07 29.4 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_7 PF12838.2 gi|159041424|ref|YP_001540676.1| - 4e-07 30.3 4.2 1.3e-06 28.6 2.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159041424|ref|YP_001540676.1| - 6.8e-06 26.4 2.7 0.0058 17.0 0.0 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041424|ref|YP_001540676.1| - 9.9e-06 25.7 8.3 0.053 13.7 0.0 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041424|ref|YP_001540676.1| - 2.4e-05 24.0 5.6 0.039 13.8 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|159041424|ref|YP_001540676.1| - 3.3e-05 23.8 11.7 0.0097 16.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|159041424|ref|YP_001540676.1| - 7.5e-05 22.1 10.3 0.032 13.8 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159041424|ref|YP_001540676.1| - 0.00013 21.6 6.5 0.05 13.4 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041424|ref|YP_001540676.1| - 0.00048 20.8 2.3 0.4 11.4 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|159041424|ref|YP_001540676.1| - 0.009 15.8 10.3 0.37 10.7 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159041424|ref|YP_001540676.1| - 0.012 15.4 3.3 1.3 8.8 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|159041424|ref|YP_001540676.1| - 0.16 12.6 13.4 0.19 12.3 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Nitrate_red_gam PF02665.9 gi|159041425|ref|YP_001540677.1| - 1.3e-12 47.5 20.2 2.6e-12 46.5 7.6 2.3 2 0 0 2 2 2 2 Nitrate reductase gamma subunit NIR_SIR PF01077.17 gi|159041426|ref|YP_001540678.1| - 2e-20 72.7 0.0 3e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4_7 PF12838.2 gi|159041426|ref|YP_001540678.1| - 0.0082 16.5 0.3 0.024 15.0 0.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159041426|ref|YP_001540678.1| - 0.011 15.5 0.9 0.03 14.1 0.6 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159041426|ref|YP_001540678.1| - 0.038 13.8 3.5 0.41 10.5 1.0 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|159041426|ref|YP_001540678.1| - 0.12 11.9 8.3 0.7 9.5 0.9 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|159041426|ref|YP_001540678.1| - 0.14 11.9 0.4 0.52 10.1 0.0 2.1 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|159041426|ref|YP_001540678.1| - 2.9 8.3 6.1 13 6.3 0.0 3.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain NIR_SIR PF01077.17 gi|159041427|ref|YP_001540679.1| - 2.5e-30 104.9 0.0 5e-30 103.9 0.0 1.5 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|159041427|ref|YP_001540679.1| - 6.4e-12 44.9 0.0 1.3e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|159041427|ref|YP_001540679.1| - 0.00021 20.7 5.6 0.0071 15.9 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159041427|ref|YP_001540679.1| - 0.00029 21.1 0.4 0.00029 21.1 0.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159041427|ref|YP_001540679.1| - 0.0098 16.4 0.7 0.62 10.6 0.0 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain LytR_C PF13399.1 gi|159041427|ref|YP_001540679.1| - 0.11 12.8 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator Fer4_6 PF12837.2 gi|159041427|ref|YP_001540679.1| - 0.13 12.1 6.0 0.27 11.1 0.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159041427|ref|YP_001540679.1| - 3.4 7.5 5.5 1.1 9.0 0.6 2.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159041427|ref|YP_001540679.1| - 5.3 7.5 6.9 3.4 8.1 0.0 3.0 3 1 0 3 3 3 0 4Fe-4S single cluster domain NUDIX PF00293.23 gi|159041428|ref|YP_001540680.1| - 1.6e-14 53.6 0.0 2.1e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.1 gi|159041428|ref|YP_001540680.1| - 0.0015 18.0 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 DBC1 DsrC PF04358.8 gi|159041429|ref|YP_001540681.1| - 3.6e-40 136.5 0.0 4.1e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein TrmB PF01978.14 gi|159041430|ref|YP_001540682.1| - 3.6e-05 23.3 0.2 0.00013 21.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|159041430|ref|YP_001540682.1| - 0.00012 21.3 3.0 0.00022 20.5 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|159041430|ref|YP_001540682.1| - 0.0047 16.5 0.0 0.023 14.3 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|159041430|ref|YP_001540682.1| - 0.0058 16.3 0.1 0.26 11.0 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_26 PF13443.1 gi|159041430|ref|YP_001540682.1| - 0.013 15.6 0.2 2.7 8.2 0.0 2.6 2 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Penicillinase_R PF03965.11 gi|159041430|ref|YP_001540682.1| - 0.025 14.6 0.0 0.072 13.1 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor HTH_34 PF13601.1 gi|159041430|ref|YP_001540682.1| - 0.035 14.1 0.5 4 7.5 0.1 2.2 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|159041430|ref|YP_001540682.1| - 0.12 11.9 0.0 0.82 9.2 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TusA PF01206.12 gi|159041431|ref|YP_001540683.1| - 6.4e-18 64.1 0.1 7.5e-18 63.9 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA MFS_1 PF07690.11 gi|159041432|ref|YP_001540684.1| - 1.6e-25 89.5 49.2 8.7e-17 60.8 20.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|159041432|ref|YP_001540684.1| - 2.3 8.2 10.3 0.31 11.0 0.1 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF1228) Phage_holin_2 PF04550.7 gi|159041433|ref|YP_001540685.1| - 0.0098 15.9 1.2 0.03 14.3 0.5 2.3 1 1 0 1 1 1 1 Phage holin family 2 DASH_Dad2 PF08654.5 gi|159041434|ref|YP_001540686.1| - 0.0082 16.1 0.4 0.54 10.2 0.0 2.2 2 0 0 2 2 2 2 DASH complex subunit Dad2 Takusan PF04822.8 gi|159041434|ref|YP_001540686.1| - 0.035 13.8 1.7 1.5 8.6 0.3 2.3 2 0 0 2 2 2 0 Takusan AAA_32 PF13654.1 gi|159041435|ref|YP_001540687.1| - 0.0069 15.0 3.5 0.008 14.8 2.4 1.0 1 0 0 1 1 1 1 AAA domain Prominin PF05478.6 gi|159041435|ref|YP_001540687.1| - 0.0072 13.9 1.8 0.0091 13.5 1.3 1.1 1 0 0 1 1 1 1 Prominin FbpA PF05833.6 gi|159041435|ref|YP_001540687.1| - 0.0075 14.8 1.6 0.0085 14.6 1.1 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF4297 PF14130.1 gi|159041435|ref|YP_001540687.1| - 0.0092 15.9 2.0 0.01 15.7 1.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4297) DUF4085 PF13315.1 gi|159041435|ref|YP_001540687.1| - 0.014 14.8 2.0 0.021 14.2 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4085) DDE_Tnp_1_3 PF13612.1 gi|159041435|ref|YP_001540687.1| - 0.014 15.1 2.0 0.019 14.6 1.4 1.3 1 1 0 1 1 1 0 Transposase DDE domain PrkA PF06798.7 gi|159041435|ref|YP_001540687.1| - 0.019 14.2 2.4 0.022 14.0 1.7 1.1 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain Med21 PF11221.3 gi|159041435|ref|YP_001540687.1| - 0.028 14.3 2.1 0.03 14.2 0.8 1.5 1 1 0 1 1 1 0 Subunit 21 of Mediator complex V_ATPase_I PF01496.14 gi|159041435|ref|YP_001540687.1| - 0.029 12.2 1.8 0.034 12.0 1.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Apolipoprotein PF01442.13 gi|159041435|ref|YP_001540687.1| - 0.038 13.5 1.5 0.043 13.3 1.0 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Mitofilin PF09731.4 gi|159041435|ref|YP_001540687.1| - 0.048 12.3 3.4 0.05 12.2 2.3 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein PEP-utilisers_N PF05524.8 gi|159041435|ref|YP_001540687.1| - 0.062 13.1 0.2 0.2 11.4 0.2 1.8 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal DnaI_N PF07319.6 gi|159041435|ref|YP_001540687.1| - 0.062 13.5 2.5 0.091 13.0 0.5 1.9 1 1 1 2 2 2 0 Primosomal protein DnaI N-terminus DUF384 PF04064.8 gi|159041435|ref|YP_001540687.1| - 0.079 12.5 0.3 0.18 11.3 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF384) AATF-Che1 PF13339.1 gi|159041435|ref|YP_001540687.1| - 0.081 13.0 1.7 0.096 12.8 1.2 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF445 PF04286.7 gi|159041435|ref|YP_001540687.1| - 0.11 11.9 1.5 0.15 11.5 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF1319 PF07028.6 gi|159041435|ref|YP_001540687.1| - 0.13 12.5 5.1 0.38 10.9 3.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) DUF948 PF06103.6 gi|159041435|ref|YP_001540687.1| - 0.13 12.1 0.6 0.68 9.8 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|159041435|ref|YP_001540687.1| - 0.13 12.0 0.2 0.21 11.3 0.1 1.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF883 PF05957.8 gi|159041435|ref|YP_001540687.1| - 0.17 12.3 3.0 0.24 11.7 1.9 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) TACC PF05010.9 gi|159041435|ref|YP_001540687.1| - 0.17 11.6 4.0 0.29 10.8 2.8 1.5 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) P4Ha_N PF08336.6 gi|159041435|ref|YP_001540687.1| - 0.22 11.3 3.4 4.5 7.0 0.5 2.1 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF1664 PF07889.7 gi|159041435|ref|YP_001540687.1| - 0.23 11.2 3.8 0.68 9.7 2.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Med28 PF11594.3 gi|159041435|ref|YP_001540687.1| - 0.4 10.9 4.4 7.3 6.8 3.0 2.2 1 1 0 1 1 1 0 Mediator complex subunit 28 RRF PF01765.14 gi|159041435|ref|YP_001540687.1| - 0.43 10.0 6.5 0.24 10.8 3.2 1.6 1 1 1 2 2 2 0 Ribosome recycling factor DUF1829 PF08862.5 gi|159041435|ref|YP_001540687.1| - 0.46 10.7 3.8 2.2 8.6 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF1829 DUF1640 PF07798.6 gi|159041435|ref|YP_001540687.1| - 2.7 7.9 7.0 4.2 7.3 4.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF460 PF04312.8 gi|159041436|ref|YP_001540688.1| - 1.1e-46 157.7 3.0 2.4e-46 156.6 0.2 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF460) THUMP PF02926.12 gi|159041436|ref|YP_001540688.1| - 0.0072 16.2 3.5 0.014 15.2 0.5 2.9 2 1 1 4 4 4 1 THUMP domain Lebercilin PF15619.1 gi|159041436|ref|YP_001540688.1| - 0.047 13.1 6.2 0.018 14.4 2.3 1.7 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease TSC22 PF01166.13 gi|159041436|ref|YP_001540688.1| - 0.16 11.9 7.4 0.032 14.2 1.8 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family DivIC PF04977.10 gi|159041436|ref|YP_001540688.1| - 0.25 10.8 5.3 0.048 13.1 0.4 2.2 2 0 0 2 2 2 0 Septum formation initiator bZIP_1 PF00170.16 gi|159041436|ref|YP_001540688.1| - 1.4 8.9 7.6 0.13 12.2 0.9 2.5 2 0 0 2 2 2 0 bZIP transcription factor IncA PF04156.9 gi|159041436|ref|YP_001540688.1| - 2.6 7.6 9.8 1.2 8.6 5.1 1.6 2 0 0 2 2 2 0 IncA protein BLOC1_2 PF10046.4 gi|159041436|ref|YP_001540688.1| - 8.9 6.5 18.8 1.5 9.0 0.2 4.6 5 0 0 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Methyltransf_11 PF08241.7 gi|159041437|ref|YP_001540689.1| - 7.1e-19 68.1 0.0 1.3e-18 67.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159041437|ref|YP_001540689.1| - 2e-14 53.6 0.0 2.9e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041437|ref|YP_001540689.1| - 4.3e-13 49.1 0.0 7e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159041437|ref|YP_001540689.1| - 4e-11 42.4 0.0 7.3e-11 41.6 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|159041437|ref|YP_001540689.1| - 1e-09 38.7 0.0 2.3e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041437|ref|YP_001540689.1| - 7.7e-09 36.1 0.0 1.6e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041437|ref|YP_001540689.1| - 7.7e-08 32.6 0.0 1.2e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|159041437|ref|YP_001540689.1| - 9.2e-07 28.4 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|159041437|ref|YP_001540689.1| - 0.00014 21.9 0.0 0.00028 20.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|159041437|ref|YP_001540689.1| - 0.00015 20.7 0.0 0.00049 19.0 0.0 1.7 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.10 gi|159041437|ref|YP_001540689.1| - 0.00023 20.8 0.0 0.00036 20.2 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|159041437|ref|YP_001540689.1| - 0.0019 16.6 0.0 0.0019 16.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|159041437|ref|YP_001540689.1| - 0.002 17.5 0.0 0.011 15.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain NNMT_PNMT_TEMT PF01234.12 gi|159041437|ref|YP_001540689.1| - 0.045 12.7 0.0 0.1 11.5 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_9 PF08003.6 gi|159041437|ref|YP_001540689.1| - 0.049 12.3 0.1 0.14 10.8 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) CheR PF01739.13 gi|159041437|ref|YP_001540689.1| - 0.15 11.3 0.0 7.4 5.7 0.0 2.2 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain AdoMet_Synthase PF01941.14 gi|159041438|ref|YP_001540690.1| - 1.3e-173 577.0 4.0 1.5e-173 576.8 2.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|159041438|ref|YP_001540690.1| - 0.099 12.8 0.1 0.7 10.1 0.0 2.4 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain LSM PF01423.17 gi|159041439|ref|YP_001540691.1| - 4.3e-18 64.6 1.4 5.5e-18 64.2 1.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|159041439|ref|YP_001540691.1| - 0.0088 15.9 0.1 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Xan_ur_permease PF00860.15 gi|159041440|ref|YP_001540692.1| - 3.8e-25 88.1 52.0 2.4e-23 82.2 36.0 2.1 1 1 0 1 1 1 1 Permease family Epimerase PF01370.16 gi|159041441|ref|YP_001540693.1| - 1.6e-38 132.4 0.0 1.9e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|159041441|ref|YP_001540693.1| - 1e-15 57.1 0.0 1.4e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|159041441|ref|YP_001540693.1| - 1.9e-09 36.8 0.0 2.9e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|159041441|ref|YP_001540693.1| - 2.7e-08 33.0 0.1 5.7e-08 31.9 0.0 1.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|159041441|ref|YP_001540693.1| - 4.5e-08 32.3 0.0 2.5e-06 26.6 0.0 2.1 1 1 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|159041441|ref|YP_001540693.1| - 1.9e-06 27.8 0.0 3.2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|159041441|ref|YP_001540693.1| - 0.0001 22.4 0.2 0.00037 20.5 0.1 2.3 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|159041441|ref|YP_001540693.1| - 0.00048 19.4 0.0 0.0007 18.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|159041441|ref|YP_001540693.1| - 0.0013 18.4 0.0 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|159041442|ref|YP_001540694.1| - 6.6e-30 104.6 0.0 8.2e-30 104.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|159041442|ref|YP_001540694.1| - 3e-28 98.8 0.0 4.5e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|159041442|ref|YP_001540694.1| - 5.9e-10 39.1 0.0 8.9e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 KR domain SRP54 PF00448.17 gi|159041443|ref|YP_001540695.1| - 1.7e-67 226.6 0.0 2.2e-67 226.3 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|159041443|ref|YP_001540695.1| - 7.2e-12 45.2 1.1 1.6e-11 44.0 0.8 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|159041443|ref|YP_001540695.1| - 3.8e-05 23.4 0.2 0.00013 21.6 0.0 2.0 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|159041443|ref|YP_001540695.1| - 4.3e-05 23.6 0.0 0.00015 21.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|159041443|ref|YP_001540695.1| - 6.9e-05 23.0 0.1 0.0029 17.8 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|159041443|ref|YP_001540695.1| - 0.00017 21.1 0.2 0.00065 19.1 0.2 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|159041443|ref|YP_001540695.1| - 0.00044 19.9 0.0 0.00073 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Peripla_BP_4 PF13407.1 gi|159041443|ref|YP_001540695.1| - 0.0023 17.3 0.1 0.14 11.4 0.0 2.3 1 1 1 2 2 2 1 Periplasmic binding protein domain AAA_10 PF12846.2 gi|159041443|ref|YP_001540695.1| - 0.0039 16.6 0.4 0.0092 15.4 0.1 1.9 2 1 0 2 2 2 1 AAA-like domain AAA_28 PF13521.1 gi|159041443|ref|YP_001540695.1| - 0.0048 16.8 0.1 0.01 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|159041443|ref|YP_001540695.1| - 0.0057 16.2 0.0 0.026 14.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|159041443|ref|YP_001540695.1| - 0.0073 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|159041443|ref|YP_001540695.1| - 0.0076 16.2 0.1 0.038 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|159041443|ref|YP_001540695.1| - 0.011 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|159041443|ref|YP_001540695.1| - 0.011 15.4 0.2 0.19 11.3 0.2 2.3 1 1 0 1 1 1 0 NTPase AAA_19 PF13245.1 gi|159041443|ref|YP_001540695.1| - 0.012 15.3 0.3 0.058 13.1 0.2 2.3 1 1 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|159041443|ref|YP_001540695.1| - 0.02 14.8 0.0 0.052 13.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|159041443|ref|YP_001540695.1| - 0.024 14.0 0.1 0.059 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|159041443|ref|YP_001540695.1| - 0.029 13.1 0.2 0.087 11.5 0.1 1.7 1 1 0 1 1 1 0 ArgK protein Oxidored_nitro PF00148.14 gi|159041443|ref|YP_001540695.1| - 0.039 12.5 0.4 1.3 7.6 0.0 2.7 2 1 0 3 3 3 0 Nitrogenase component 1 type Oxidoreductase APS_kinase PF01583.15 gi|159041443|ref|YP_001540695.1| - 0.044 13.4 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_23 PF13476.1 gi|159041443|ref|YP_001540695.1| - 0.049 13.9 0.5 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2855 PF11017.3 gi|159041443|ref|YP_001540695.1| - 0.056 12.5 0.0 0.071 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) ABC_tran PF00005.22 gi|159041443|ref|YP_001540695.1| - 0.097 12.9 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Dioxygenase_N PF04444.9 gi|159041443|ref|YP_001540695.1| - 0.12 12.4 0.0 0.48 10.4 0.0 2.0 2 0 0 2 2 2 0 Catechol dioxygenase N terminus AAA_29 PF13555.1 gi|159041443|ref|YP_001540695.1| - 0.12 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain CbiA PF01656.18 gi|159041443|ref|YP_001540695.1| - 0.58 9.5 2.7 4 6.8 1.0 2.6 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Prefoldin PF02996.12 gi|159041444|ref|YP_001540696.1| - 1.5e-22 79.4 1.4 1.5e-22 79.4 1.0 1.8 1 1 1 2 2 2 1 Prefoldin subunit ATG16 PF08614.6 gi|159041444|ref|YP_001540696.1| - 0.0022 17.8 0.7 0.0028 17.4 0.5 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) EAP30 PF04157.11 gi|159041444|ref|YP_001540696.1| - 0.0077 15.4 0.3 1.8 7.6 0.0 2.1 2 0 0 2 2 2 1 EAP30/Vps36 family Tektin PF03148.9 gi|159041444|ref|YP_001540696.1| - 0.0094 14.5 1.4 0.21 10.1 0.2 2.0 2 0 0 2 2 2 1 Tektin family Nsp1_C PF05064.8 gi|159041444|ref|YP_001540696.1| - 0.022 14.3 0.9 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region TSKS PF15358.1 gi|159041444|ref|YP_001540696.1| - 0.023 12.8 0.4 0.16 10.1 0.1 1.9 2 0 0 2 2 2 0 Testis-specific serine kinase substrate Spectrin PF00435.16 gi|159041444|ref|YP_001540696.1| - 0.03 14.6 2.6 0.81 10.0 0.1 2.4 2 1 0 2 2 2 0 Spectrin repeat Prefoldin_2 PF01920.15 gi|159041444|ref|YP_001540696.1| - 0.033 13.9 5.9 3.9 7.2 4.1 2.3 1 1 0 1 1 1 0 Prefoldin subunit DNA_topoisoIV PF00521.15 gi|159041444|ref|YP_001540696.1| - 0.036 12.9 0.7 0.043 12.6 0.5 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Fib_alpha PF08702.5 gi|159041444|ref|YP_001540696.1| - 0.042 13.9 0.8 4.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF2421 PF10334.4 gi|159041444|ref|YP_001540696.1| - 0.043 13.4 0.2 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2421) Tht1 PF04163.7 gi|159041444|ref|YP_001540696.1| - 0.043 12.2 2.5 0.1 10.9 1.7 1.5 1 1 0 1 1 1 0 Tht1-like nuclear fusion protein Syntaxin-6_N PF09177.6 gi|159041444|ref|YP_001540696.1| - 0.044 14.1 1.4 0.51 10.7 0.1 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Rab5-bind PF09311.6 gi|159041444|ref|YP_001540696.1| - 0.047 13.5 3.9 2.1 8.2 0.5 2.1 2 0 0 2 2 2 0 Rabaptin-like protein GAS PF13851.1 gi|159041444|ref|YP_001540696.1| - 0.051 12.7 2.0 1.3 8.1 0.2 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding SlyX PF04102.7 gi|159041444|ref|YP_001540696.1| - 0.055 13.8 3.3 0.43 10.9 0.9 2.2 2 0 0 2 2 2 0 SlyX LIF_OSM PF01291.12 gi|159041444|ref|YP_001540696.1| - 0.06 13.2 0.2 0.11 12.4 0.1 1.4 1 1 0 1 1 1 0 LIF / OSM family Mer2 PF09074.5 gi|159041444|ref|YP_001540696.1| - 0.065 13.1 1.5 2.8 7.8 0.3 2.1 2 0 0 2 2 2 0 Mer2 COG5 PF10392.4 gi|159041444|ref|YP_001540696.1| - 0.072 13.0 2.3 4 7.3 0.1 2.1 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Spc7 PF08317.6 gi|159041444|ref|YP_001540696.1| - 0.075 11.6 2.6 0.38 9.3 0.3 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein IncA PF04156.9 gi|159041444|ref|YP_001540696.1| - 0.076 12.6 3.2 1.7 8.1 0.2 2.1 2 0 0 2 2 2 0 IncA protein Uso1_p115_C PF04871.8 gi|159041444|ref|YP_001540696.1| - 0.09 12.7 3.9 0.31 10.9 0.3 2.1 1 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Snf7 PF03357.16 gi|159041444|ref|YP_001540696.1| - 0.094 12.1 3.2 0.45 9.8 0.4 2.1 2 0 0 2 2 2 0 Snf7 DUF4164 PF13747.1 gi|159041444|ref|YP_001540696.1| - 0.096 12.8 4.4 0.23 11.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) SYCE1 PF15233.1 gi|159041444|ref|YP_001540696.1| - 0.11 12.4 2.9 2.6 7.9 0.2 2.2 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 CASP_C PF08172.7 gi|159041444|ref|YP_001540696.1| - 0.11 11.5 1.7 0.82 8.6 0.2 2.0 2 0 0 2 2 2 0 CASP C terminal Seryl_tRNA_N PF02403.17 gi|159041444|ref|YP_001540696.1| - 0.11 12.5 2.0 6.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Tropomyosin PF00261.15 gi|159041444|ref|YP_001540696.1| - 0.12 11.4 4.3 0.2 10.7 0.9 2.0 2 0 0 2 2 2 0 Tropomyosin MerR-DNA-bind PF09278.6 gi|159041444|ref|YP_001540696.1| - 0.13 12.6 4.3 11 6.5 0.2 3.1 2 2 2 4 4 3 0 MerR, DNA binding DUF904 PF06005.7 gi|159041444|ref|YP_001540696.1| - 0.13 12.5 8.3 0.097 12.9 2.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF904) V_ATPase_I PF01496.14 gi|159041444|ref|YP_001540696.1| - 0.14 10.0 3.9 0.14 9.9 0.3 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1492 PF07374.6 gi|159041444|ref|YP_001540696.1| - 0.2 11.7 1.6 13 6.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) TBPIP PF07106.8 gi|159041444|ref|YP_001540696.1| - 0.2 11.1 3.1 1.9 8.0 0.6 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4298 PF14131.1 gi|159041444|ref|YP_001540696.1| - 0.22 11.4 2.7 5.5 6.9 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4298) Osmo_CC PF08946.5 gi|159041444|ref|YP_001540696.1| - 0.22 11.5 1.0 1.8 8.6 0.1 2.6 2 1 1 3 3 3 0 Osmosensory transporter coiled coil Spc24 PF08286.6 gi|159041444|ref|YP_001540696.1| - 0.27 10.9 3.4 2.5 7.8 0.7 2.4 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 MCPsignal PF00015.16 gi|159041444|ref|YP_001540696.1| - 0.28 10.6 2.9 1.7 8.1 2.0 1.9 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.1 gi|159041444|ref|YP_001540696.1| - 0.3 11.4 3.8 1.2 9.5 0.6 2.2 2 0 0 2 2 2 0 Snapin/Pallidin TMF_TATA_bd PF12325.3 gi|159041444|ref|YP_001540696.1| - 0.59 9.8 4.9 3.8 7.2 0.2 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DivIVA PF05103.8 gi|159041444|ref|YP_001540696.1| - 0.6 10.1 4.0 5.4 7.0 0.5 2.1 2 0 0 2 2 2 0 DivIVA protein Prominin PF05478.6 gi|159041444|ref|YP_001540696.1| - 0.65 7.4 3.9 0.47 7.9 0.4 1.7 1 1 0 1 1 1 0 Prominin Syntaxin_2 PF14523.1 gi|159041444|ref|YP_001540696.1| - 0.74 9.8 3.4 5.7 7.0 0.4 2.2 2 0 0 2 2 2 0 Syntaxin-like protein NPV_P10 PF05531.7 gi|159041444|ref|YP_001540696.1| - 0.76 10.0 3.7 6.5 7.0 0.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein H-kinase_dim PF02895.9 gi|159041444|ref|YP_001540696.1| - 0.84 10.0 6.8 30 5.0 4.7 2.3 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain Myosin_tail_1 PF01576.14 gi|159041444|ref|YP_001540696.1| - 1.2 6.8 4.6 4.1 4.9 3.2 1.7 1 1 0 1 1 1 0 Myosin tail ALIX_LYPXL_bnd PF13949.1 gi|159041444|ref|YP_001540696.1| - 1.2 8.0 4.7 3.2 6.6 3.3 1.6 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV CorA PF01544.13 gi|159041444|ref|YP_001540696.1| - 1.3 8.0 4.1 3.4 6.6 0.4 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein TMF_DNA_bd PF12329.3 gi|159041444|ref|YP_001540696.1| - 4.1 7.2 8.0 3.5 7.4 1.4 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Reo_sigmaC PF04582.7 gi|159041444|ref|YP_001540696.1| - 6.3 5.8 6.1 16 4.5 0.7 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Ribosomal_L18ae PF01775.12 gi|159041445|ref|YP_001540697.1| - 5.6e-09 35.9 0.0 8.6e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain DUF3766 PF12611.3 gi|159041445|ref|YP_001540697.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3766) DUF3332 PF11810.3 gi|159041445|ref|YP_001540697.1| - 0.14 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3332) Actin PF00022.14 gi|159041446|ref|YP_001540698.1| - 2.4e-13 49.2 0.0 1.3e-12 46.8 0.0 1.9 1 1 0 1 1 1 1 Actin HTH_10 PF04967.7 gi|159041447|ref|YP_001540699.1| - 3.9e-19 67.9 0.0 6e-19 67.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|159041447|ref|YP_001540699.1| - 1.4e-06 27.4 0.1 4.2e-06 25.9 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|159041447|ref|YP_001540699.1| - 2.8e-05 23.4 0.4 0.076 12.4 0.0 3.2 3 0 0 3 3 3 2 Sigma-70, region 4 GerE PF00196.14 gi|159041447|ref|YP_001540699.1| - 3.2e-05 23.1 0.4 0.0004 19.6 0.3 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.5 gi|159041447|ref|YP_001540699.1| - 3.5e-05 23.2 0.0 0.00017 21.1 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|159041447|ref|YP_001540699.1| - 6.3e-05 22.5 0.2 0.00013 21.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|159041447|ref|YP_001540699.1| - 0.00043 20.0 0.2 0.01 15.6 0.0 2.8 3 1 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|159041447|ref|YP_001540699.1| - 0.00054 19.5 0.0 0.0013 18.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|159041447|ref|YP_001540699.1| - 0.0014 17.9 0.0 0.0052 16.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|159041447|ref|YP_001540699.1| - 0.0028 17.2 0.0 0.01 15.4 0.0 2.0 1 1 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|159041447|ref|YP_001540699.1| - 0.016 14.7 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|159041447|ref|YP_001540699.1| - 0.022 14.4 0.0 0.071 12.8 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_psq PF05225.11 gi|159041447|ref|YP_001540699.1| - 0.061 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_11 PF08279.7 gi|159041447|ref|YP_001540699.1| - 0.068 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|159041447|ref|YP_001540699.1| - 0.069 13.4 0.0 1.2 9.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_4 PF13613.1 gi|159041447|ref|YP_001540699.1| - 0.073 12.6 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_28 PF13518.1 gi|159041447|ref|YP_001540699.1| - 0.074 13.0 0.0 0.31 11.0 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|159041447|ref|YP_001540699.1| - 0.089 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain SpoIIID PF12116.3 gi|159041447|ref|YP_001540699.1| - 0.11 12.4 0.1 0.31 10.9 0.0 1.8 2 0 0 2 2 1 0 Stage III sporulation protein D LacI PF00356.16 gi|159041447|ref|YP_001540699.1| - 0.12 12.0 0.2 0.29 10.8 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, lacI family SBP_bac_5 PF00496.17 gi|159041448|ref|YP_001540700.1| - 8.4e-34 116.9 11.3 1.4e-33 116.2 7.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041448|ref|YP_001540700.1| - 0.51 9.9 11.5 0.77 9.3 8.0 1.2 1 0 0 1 1 1 0 Rifin/stevor family NAD_binding_2 PF03446.10 gi|159041450|ref|YP_001540702.1| - 5.6e-25 88.0 0.1 8.3e-25 87.5 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|159041450|ref|YP_001540702.1| - 6.8e-20 71.3 0.0 1.1e-19 70.7 0.0 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|159041450|ref|YP_001540702.1| - 2e-07 30.5 2.7 2e-06 27.3 0.1 2.9 1 1 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|159041450|ref|YP_001540702.1| - 5.7e-07 29.8 0.6 1.5e-06 28.5 0.2 1.9 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|159041450|ref|YP_001540702.1| - 6.5e-07 29.2 1.2 5.3e-05 22.9 0.8 2.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|159041450|ref|YP_001540702.1| - 3.3e-06 26.8 0.7 1.6e-05 24.6 0.1 2.2 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|159041450|ref|YP_001540702.1| - 4e-06 26.7 2.0 1.3e-05 25.1 0.4 2.5 2 1 0 2 2 2 1 TrkA-N domain GFO_IDH_MocA PF01408.17 gi|159041450|ref|YP_001540702.1| - 0.00016 22.1 0.0 0.00095 19.6 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|159041450|ref|YP_001540702.1| - 0.0002 20.5 0.1 0.00031 19.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|159041450|ref|YP_001540702.1| - 0.00023 21.2 0.1 0.00036 20.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding CbiA PF01656.18 gi|159041450|ref|YP_001540702.1| - 0.00057 19.3 0.1 0.11 11.8 0.1 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ApbA PF02558.11 gi|159041450|ref|YP_001540702.1| - 0.00059 19.2 0.3 0.0012 18.2 0.2 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|159041450|ref|YP_001540702.1| - 0.0018 17.9 0.2 0.0037 16.9 0.1 1.6 1 0 0 1 1 1 1 Rossmann-like domain AdoHcyase_NAD PF00670.16 gi|159041450|ref|YP_001540702.1| - 0.0018 18.1 0.3 0.003 17.3 0.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UPF0146 PF03686.8 gi|159041450|ref|YP_001540702.1| - 0.0039 17.0 0.2 1.1 9.1 0.1 2.3 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) CoA_binding PF02629.14 gi|159041450|ref|YP_001540702.1| - 0.0094 16.4 0.5 0.02 15.4 0.4 1.6 1 0 0 1 1 1 1 CoA binding domain DAO PF01266.19 gi|159041450|ref|YP_001540702.1| - 0.027 13.3 0.1 0.034 13.0 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DDE_Tnp_Tn3 PF01526.12 gi|159041450|ref|YP_001540702.1| - 0.062 11.9 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Tn3 transposase DDE domain UDPG_MGDP_dh PF00984.14 gi|159041450|ref|YP_001540702.1| - 0.12 12.5 0.0 0.77 10.0 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Shikimate_DH PF01488.15 gi|159041450|ref|YP_001540702.1| - 0.26 11.3 1.8 1.3 9.0 0.7 2.5 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Aminotran_1_2 PF00155.16 gi|159041451|ref|YP_001540703.1| - 1.7e-28 99.6 0.0 2.1e-28 99.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|159041451|ref|YP_001540703.1| - 0.015 13.9 0.0 0.029 12.9 0.0 1.6 2 0 0 2 2 2 0 Alanine-glyoxylate amino-transferase DJ-1_PfpI PF01965.19 gi|159041453|ref|YP_001540705.1| - 7.7e-37 126.0 0.0 8.8e-37 125.8 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|159041453|ref|YP_001540705.1| - 2.4e-08 33.4 0.0 4e-08 32.7 0.0 1.4 1 1 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|159041453|ref|YP_001540705.1| - 0.00066 19.1 0.0 0.00082 18.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|159041453|ref|YP_001540705.1| - 0.0041 16.7 0.0 0.0057 16.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain TPR_1 PF00515.23 gi|159041454|ref|YP_001540706.1| - 1.5e-15 56.0 2.9 1.1e-06 27.9 0.1 3.5 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|159041454|ref|YP_001540706.1| - 3e-15 55.6 8.1 6.1e-08 32.1 0.2 2.3 2 0 0 2 2 2 2 TPR repeat TPR_17 PF13431.1 gi|159041454|ref|YP_001540706.1| - 5.2e-14 51.1 0.8 2.8e-05 23.9 0.0 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|159041454|ref|YP_001540706.1| - 2.8e-13 48.6 13.0 1.2e-06 28.0 0.2 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|159041454|ref|YP_001540706.1| - 4e-09 36.2 5.3 0.0018 18.7 0.3 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|159041454|ref|YP_001540706.1| - 7.1e-09 36.1 7.6 0.00011 22.7 0.9 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|159041454|ref|YP_001540706.1| - 7.6e-09 35.4 2.0 0.07 13.6 0.0 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|159041454|ref|YP_001540706.1| - 9.7e-09 35.4 1.4 0.00043 20.5 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|159041454|ref|YP_001540706.1| - 1.5e-08 34.4 8.4 5.9e-08 32.5 0.2 2.8 2 1 1 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|159041454|ref|YP_001540706.1| - 1.3e-07 31.6 0.5 1.3e-07 31.6 0.4 2.2 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|159041454|ref|YP_001540706.1| - 4.9e-07 29.0 5.7 0.0028 17.2 0.0 4.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|159041454|ref|YP_001540706.1| - 7.7e-07 28.4 1.1 0.0014 18.2 0.2 3.6 3 1 0 3 3 3 1 Tetratricopeptide repeat BTAD PF03704.12 gi|159041454|ref|YP_001540706.1| - 2.9e-05 24.4 5.1 0.0073 16.6 0.8 2.1 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|159041454|ref|YP_001540706.1| - 0.0019 18.4 1.3 13 6.5 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|159041454|ref|YP_001540706.1| - 0.0021 17.9 3.0 0.29 11.1 0.2 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|159041454|ref|YP_001540706.1| - 0.0077 16.2 0.1 0.022 14.8 0.0 1.8 1 1 0 1 1 1 1 Tetratrico peptide repeat Coatomer_E PF04733.9 gi|159041454|ref|YP_001540706.1| - 0.016 14.3 0.0 0.061 12.5 0.0 2.0 2 1 1 3 3 3 0 Coatomer epsilon subunit TPR_9 PF13371.1 gi|159041454|ref|YP_001540706.1| - 0.016 15.0 2.4 0.41 10.5 0.2 3.0 1 1 2 3 3 3 0 Tetratricopeptide repeat TPR_15 PF13429.1 gi|159041454|ref|YP_001540706.1| - 0.019 14.0 0.8 0.027 13.5 0.6 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat PPR_3 PF13812.1 gi|159041454|ref|YP_001540706.1| - 0.059 13.6 0.1 11 6.6 0.0 2.9 3 0 0 3 3 2 0 Pentatricopeptide repeat domain Sel1 PF08238.7 gi|159041454|ref|YP_001540706.1| - 2.9 8.6 6.6 16 6.2 0.1 3.4 3 1 1 4 4 3 0 Sel1 repeat NTP_transf_2 PF01909.18 gi|159041455|ref|YP_001540707.1| - 1.7e-07 31.4 0.5 2.6e-07 30.8 0.3 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain PAS_3 PF08447.6 gi|159041455|ref|YP_001540707.1| - 0.025 14.6 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 PAS fold DUF294 PF03445.8 gi|159041455|ref|YP_001540707.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NTF-like PF14540.1 gi|159041455|ref|YP_001540707.1| - 0.05 13.2 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase-like HEPN PF05168.9 gi|159041456|ref|YP_001540708.1| - 2.3e-07 30.7 0.0 3.7e-07 30.0 0.0 1.3 1 1 0 1 1 1 1 HEPN domain tRNA-synt_2b PF00587.20 gi|159041457|ref|YP_001540709.1| - 7.5e-32 110.2 0.0 1.2e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|159041457|ref|YP_001540709.1| - 8.3e-21 74.0 1.6 1.5e-20 73.1 1.1 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain ALIX_LYPXL_bnd PF13949.1 gi|159041457|ref|YP_001540709.1| - 0.0004 19.4 0.9 0.00068 18.6 0.6 1.3 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Takusan PF04822.8 gi|159041457|ref|YP_001540709.1| - 0.01 15.6 2.6 0.014 15.1 1.3 1.6 1 1 0 1 1 1 1 Takusan CENP-F_leu_zip PF10473.4 gi|159041457|ref|YP_001540709.1| - 0.011 15.6 1.0 0.019 14.8 0.7 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF342 PF03961.8 gi|159041457|ref|YP_001540709.1| - 0.045 12.1 0.2 0.065 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DivIVA PF05103.8 gi|159041457|ref|YP_001540709.1| - 0.63 10.0 2.7 20 5.2 0.1 2.3 1 1 0 1 1 1 0 DivIVA protein T2SE PF00437.15 gi|159041458|ref|YP_001540710.1| - 1.2e-29 103.0 0.2 1.9e-29 102.4 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|159041458|ref|YP_001540710.1| - 4.7e-06 26.9 0.0 9.6e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|159041458|ref|YP_001540710.1| - 0.0004 19.5 0.1 0.0013 17.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.1 gi|159041458|ref|YP_001540710.1| - 0.0014 19.4 0.0 0.0031 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2795 PF11387.3 gi|159041458|ref|YP_001540710.1| - 0.0034 17.1 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2795) CbiA PF01656.18 gi|159041458|ref|YP_001540710.1| - 0.0059 16.0 0.1 0.014 14.7 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|159041458|ref|YP_001540710.1| - 0.015 14.9 0.0 0.037 13.7 0.0 1.6 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA_10 PF12846.2 gi|159041458|ref|YP_001540710.1| - 0.016 14.6 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|159041458|ref|YP_001540710.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|159041458|ref|YP_001540710.1| - 0.018 14.5 0.1 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|159041458|ref|YP_001540710.1| - 0.02 15.2 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|159041458|ref|YP_001540710.1| - 0.035 13.5 0.1 0.075 12.4 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|159041458|ref|YP_001540710.1| - 0.035 13.9 0.0 0.086 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|159041458|ref|YP_001540710.1| - 0.035 14.1 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_31 PF13614.1 gi|159041458|ref|YP_001540710.1| - 0.04 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|159041458|ref|YP_001540710.1| - 0.041 13.3 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|159041458|ref|YP_001540710.1| - 0.041 14.1 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter ArsA_ATPase PF02374.10 gi|159041458|ref|YP_001540710.1| - 0.063 12.3 0.3 0.14 11.1 0.2 1.6 1 1 0 1 1 1 0 Anion-transporting ATPase PhoH PF02562.11 gi|159041458|ref|YP_001540710.1| - 0.093 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|159041458|ref|YP_001540710.1| - 0.1 12.0 0.0 0.25 10.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|159041458|ref|YP_001540710.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MerC PF03203.9 gi|159041459|ref|YP_001540711.1| - 0.061 13.6 1.9 0.069 13.5 1.3 1.3 1 1 0 1 1 1 0 MerC mercury resistance protein ABC_membrane_3 PF13748.1 gi|159041459|ref|YP_001540711.1| - 0.19 10.7 2.3 0.19 10.7 1.6 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region DUF1516 PF07457.6 gi|159041460|ref|YP_001540712.1| - 0.018 15.0 0.4 0.022 14.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) COX1 PF00115.15 gi|159041460|ref|YP_001540712.1| - 0.083 11.5 1.9 0.086 11.4 1.3 1.1 1 0 0 1 1 1 0 Cytochrome C and Quinol oxidase polypeptide I FUSC-like PF12805.2 gi|159041460|ref|YP_001540712.1| - 0.67 8.8 2.2 0.76 8.6 1.5 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF3923 PF13061.1 gi|159041460|ref|YP_001540712.1| - 0.79 9.6 4.5 0.5 10.2 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3923) DUF3302 PF11742.3 gi|159041460|ref|YP_001540712.1| - 1 9.2 5.4 2.4 8.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3302) DUF485 PF04341.7 gi|159041460|ref|YP_001540712.1| - 3 7.6 5.2 15 5.3 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF485 P12 PF12669.2 gi|159041460|ref|YP_001540712.1| - 4.4 7.5 5.7 4.6 7.5 0.1 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family ABC2_membrane_3 PF12698.2 gi|159041460|ref|YP_001540712.1| - 5 6.0 7.4 5.9 5.8 5.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein PepSY_TM_2 PF13703.1 gi|159041460|ref|YP_001540712.1| - 5.9 7.1 8.2 5.5 7.2 1.4 2.0 1 1 1 2 2 2 0 PepSY-associated TM helix RRN7 PF11781.3 gi|159041461|ref|YP_001540713.1| - 1.2e-07 31.0 0.6 2e-07 30.3 0.4 1.4 1 1 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_ribbon_recom PF13408.1 gi|159041461|ref|YP_001540713.1| - 0.0003 20.9 1.7 0.0091 16.2 0.1 2.1 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain Gin PF10764.4 gi|159041461|ref|YP_001540713.1| - 0.00038 20.1 0.8 0.00049 19.7 0.6 1.3 1 0 0 1 1 1 1 Inhibitor of sigma-G Gin zf-NADH-PPase PF09297.6 gi|159041461|ref|YP_001540713.1| - 0.00088 18.7 0.5 0.11 11.9 0.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|159041461|ref|YP_001540713.1| - 0.0044 16.6 0.9 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 Nudix N-terminal zf-UDP PF14569.1 gi|159041461|ref|YP_001540713.1| - 0.0094 15.6 0.1 0.0096 15.6 0.0 1.1 1 0 0 1 1 1 1 Zinc-binding RING-finger Herpes_UL49_1 PF03117.9 gi|159041461|ref|YP_001540713.1| - 0.016 14.2 1.5 0.093 11.8 0.1 2.0 1 1 1 2 2 2 0 UL49 family DNA_RNApol_7kD PF03604.8 gi|159041461|ref|YP_001540713.1| - 0.023 14.1 1.9 0.046 13.2 1.3 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prim_Zn_Ribbon PF08273.7 gi|159041461|ref|YP_001540713.1| - 0.036 14.1 4.6 1.2 9.2 3.2 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|159041461|ref|YP_001540713.1| - 0.037 13.8 0.5 0.18 11.6 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|159041461|ref|YP_001540713.1| - 0.046 13.5 1.3 0.11 12.3 1.0 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|159041461|ref|YP_001540713.1| - 0.056 12.7 5.1 0.31 10.3 1.8 2.7 2 1 1 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|159041461|ref|YP_001540713.1| - 0.058 12.6 3.0 0.19 10.9 2.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|159041461|ref|YP_001540713.1| - 0.066 12.9 0.6 6.7 6.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit VSP PF03302.8 gi|159041461|ref|YP_001540713.1| - 0.093 11.3 0.8 0.11 11.1 0.6 1.1 1 0 0 1 1 1 0 Giardia variant-specific surface protein zf-Sec23_Sec24 PF04810.10 gi|159041461|ref|YP_001540713.1| - 0.095 12.2 0.9 0.85 9.2 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger ADK_lid PF05191.9 gi|159041461|ref|YP_001540713.1| - 0.15 11.7 1.1 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Ribosomal_L37ae PF01780.14 gi|159041461|ref|YP_001540713.1| - 0.16 11.8 0.4 0.19 11.6 0.3 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zinc_ribbon_2 PF13240.1 gi|159041461|ref|YP_001540713.1| - 0.23 10.9 2.6 0.6 9.6 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|159041461|ref|YP_001540713.1| - 0.23 11.2 1.1 15 5.4 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PHD_2 PF13831.1 gi|159041461|ref|YP_001540713.1| - 0.24 10.7 2.1 8.9 5.7 0.1 2.2 2 0 0 2 2 2 0 PHD-finger Zn-ribbon_8 PF09723.5 gi|159041461|ref|YP_001540713.1| - 0.25 11.3 1.6 9.1 6.3 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159041461|ref|YP_001540713.1| - 0.34 10.6 1.8 1.1 8.9 1.4 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|159041461|ref|YP_001540713.1| - 0.4 10.2 3.8 2.5 7.6 2.7 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|159041461|ref|YP_001540713.1| - 0.44 10.6 2.2 16 5.6 1.6 2.1 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF678 PF05077.7 gi|159041461|ref|YP_001540713.1| - 0.48 10.4 3.1 2.7 8.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zf-RanBP PF00641.13 gi|159041461|ref|YP_001540713.1| - 0.57 9.3 5.0 0.72 9.0 0.4 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Cys_rich_KTR PF14205.1 gi|159041461|ref|YP_001540713.1| - 0.86 9.1 3.9 12 5.3 2.2 2.7 1 1 1 2 2 2 0 Cysteine-rich KTR DUF3754 PF12576.3 gi|159041462|ref|YP_001540714.1| - 0.16 11.5 2.9 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) Abhydrolase_5 PF12695.2 gi|159041463|ref|YP_001540715.1| - 4.2e-13 49.2 0.0 5.5e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|159041463|ref|YP_001540715.1| - 1.5e-12 47.9 0.0 5.1e-08 33.0 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|159041463|ref|YP_001540715.1| - 5.7e-07 29.1 0.0 6.6e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.15 gi|159041463|ref|YP_001540715.1| - 3.6e-05 23.4 0.1 0.019 14.4 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold DUF3530 PF12048.3 gi|159041463|ref|YP_001540715.1| - 3.7e-05 22.8 0.2 4.9e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3530) Abhydrolase_3 PF07859.8 gi|159041463|ref|YP_001540715.1| - 0.00054 19.5 0.0 0.00066 19.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|159041463|ref|YP_001540715.1| - 0.0035 17.1 0.0 0.0065 16.3 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Ser_hydrolase PF06821.8 gi|159041463|ref|YP_001540715.1| - 0.0096 15.5 0.0 0.027 14.0 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase PGM_PMM_I PF02878.11 gi|159041463|ref|YP_001540715.1| - 0.079 12.4 0.1 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Neuropeptide_S PF14993.1 gi|159041463|ref|YP_001540715.1| - 0.09 12.4 0.0 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 Neuropeptide S precursor protein DLH PF01738.13 gi|159041463|ref|YP_001540715.1| - 0.12 11.6 0.0 0.23 10.6 0.0 1.4 1 1 0 1 1 1 0 Dienelactone hydrolase family DUF3089 PF11288.3 gi|159041463|ref|YP_001540715.1| - 0.13 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) HD PF01966.17 gi|159041464|ref|YP_001540716.1| - 4.1e-05 23.5 0.1 0.00012 22.1 0.1 1.8 1 0 0 1 1 1 1 HD domain DUF533 PF04391.7 gi|159041464|ref|YP_001540716.1| - 0.048 13.0 0.1 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF533) NAD_binding_8 PF13450.1 gi|159041465|ref|YP_001540717.1| - 0.011 15.7 0.0 0.038 14.0 0.0 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain SE PF08491.5 gi|159041465|ref|YP_001540717.1| - 0.084 11.6 0.1 0.13 11.0 0.1 1.2 1 0 0 1 1 1 0 Squalene epoxidase tRNA-synt_1b PF00579.20 gi|159041466|ref|YP_001540718.1| - 2.7e-41 141.5 0.0 3.9e-41 141.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) eIF-5a PF01287.15 gi|159041467|ref|YP_001540719.1| - 2.7e-15 56.0 0.1 4.3e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|159041467|ref|YP_001540719.1| - 1.6e-07 31.0 0.0 3.9e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|159041467|ref|YP_001540719.1| - 0.0035 16.9 0.0 0.013 15.1 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|159041467|ref|YP_001540719.1| - 0.0084 15.7 0.2 0.042 13.5 0.1 2.1 2 0 0 2 2 2 1 KOW motif RNA_pol_Rpb2_1 PF04563.10 gi|159041467|ref|YP_001540719.1| - 0.15 11.0 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase beta subunit ABC_tran PF00005.22 gi|159041468|ref|YP_001540720.1| - 1.2e-29 103.3 0.0 1.7e-29 102.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041468|ref|YP_001540720.1| - 1.3e-09 38.4 0.0 4e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|159041468|ref|YP_001540720.1| - 0.0042 16.8 1.6 0.0096 15.6 0.0 2.2 3 0 0 3 3 3 1 Part of AAA domain MobB PF03205.9 gi|159041468|ref|YP_001540720.1| - 0.0075 15.9 0.7 0.05 13.3 0.1 2.3 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|159041468|ref|YP_001540720.1| - 0.021 15.0 0.2 0.15 12.2 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|159041468|ref|YP_001540720.1| - 0.026 14.8 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|159041468|ref|YP_001540720.1| - 0.029 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|159041468|ref|YP_001540720.1| - 0.031 13.8 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|159041468|ref|YP_001540720.1| - 0.034 14.2 0.2 0.14 12.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|159041468|ref|YP_001540720.1| - 0.068 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.24 gi|159041468|ref|YP_001540720.1| - 0.085 12.3 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase SMC_N PF02463.14 gi|159041468|ref|YP_001540720.1| - 0.088 12.0 0.0 0.42 9.8 0.0 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain PhoH PF02562.11 gi|159041468|ref|YP_001540720.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|159041468|ref|YP_001540720.1| - 0.2 12.5 0.7 2.7 8.8 0.3 2.3 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|159041469|ref|YP_001540721.1| - 3.6e-16 59.2 55.1 5.2e-12 45.6 13.3 3.5 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Cytidylate_kin2 PF13189.1 gi|159041470|ref|YP_001540722.1| - 2.7e-26 92.5 3.9 1.6e-24 86.7 2.7 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|159041470|ref|YP_001540722.1| - 1.3e-15 57.8 0.3 2.1e-15 57.1 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|159041470|ref|YP_001540722.1| - 1.8e-13 51.3 0.8 2.5e-13 50.9 0.6 1.4 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|159041470|ref|YP_001540722.1| - 7e-07 28.8 0.6 0.00014 21.2 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase SKI PF01202.17 gi|159041470|ref|YP_001540722.1| - 2.8e-06 27.3 0.5 2.4e-05 24.2 0.3 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|159041470|ref|YP_001540722.1| - 0.00029 20.7 0.1 0.00068 19.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|159041470|ref|YP_001540722.1| - 0.00035 20.5 0.1 0.0005 20.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|159041470|ref|YP_001540722.1| - 0.00076 18.9 0.4 0.0011 18.4 0.3 1.3 1 0 0 1 1 1 1 Cytidylate kinase PRK PF00485.13 gi|159041470|ref|YP_001540722.1| - 0.001 18.6 1.1 0.048 13.2 0.1 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family ADK PF00406.17 gi|159041470|ref|YP_001540722.1| - 0.0014 18.5 0.1 0.003 17.4 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|159041470|ref|YP_001540722.1| - 0.0088 16.2 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|159041470|ref|YP_001540722.1| - 0.024 14.7 0.0 0.036 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain CPT PF07931.7 gi|159041470|ref|YP_001540722.1| - 0.026 14.1 0.2 0.29 10.7 0.1 2.2 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Thymidylate_kin PF02223.12 gi|159041470|ref|YP_001540722.1| - 0.03 13.7 1.5 0.23 10.8 0.2 2.4 1 1 1 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|159041470|ref|YP_001540722.1| - 0.031 13.3 0.0 0.049 12.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|159041470|ref|YP_001540722.1| - 0.062 12.9 0.1 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 KTI12 PF08433.5 gi|159041470|ref|YP_001540722.1| - 0.079 12.1 0.2 0.2 10.8 0.1 1.8 1 1 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|159041470|ref|YP_001540722.1| - 0.1 12.2 0.1 0.15 11.7 0.1 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.1 gi|159041470|ref|YP_001540722.1| - 0.15 12.0 0.2 0.18 11.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain RHH_4 PF13467.1 gi|159041470|ref|YP_001540722.1| - 0.15 11.9 0.3 2.5 8.0 0.0 2.5 2 1 0 2 2 2 0 Ribbon-helix-helix domain Glyco_hydro_35 PF01301.14 gi|159041472|ref|YP_001540724.1| - 2.8e-66 224.0 0.0 4e-66 223.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.10 gi|159041472|ref|YP_001540724.1| - 1.5e-08 34.1 0.0 4.4e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 Beta-galactosidase BetaGal_dom4_5 PF13364.1 gi|159041472|ref|YP_001540724.1| - 0.0031 17.7 0.0 0.36 11.1 0.0 2.7 2 0 0 2 2 2 1 Beta-galactosidase jelly roll domain DegT_DnrJ_EryC1 PF01041.12 gi|159041473|ref|YP_001540725.1| - 4.1e-95 318.9 0.0 4.6e-95 318.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|159041473|ref|YP_001540725.1| - 8.9e-06 25.0 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Amidohydro_2 PF04909.9 gi|159041474|ref|YP_001540726.1| - 1.8e-05 24.4 0.0 2.4e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_2 PF04909.9 gi|159041475|ref|YP_001540727.1| - 6.4e-31 107.9 0.0 8.5e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|159041475|ref|YP_001540727.1| - 0.0096 15.1 0.0 0.025 13.7 0.0 1.7 1 1 0 1 1 1 1 TatD related DNase TIP49 PF06068.8 gi|159041476|ref|YP_001540728.1| - 4.2e-151 503.2 1.5 4.9e-151 502.9 1.1 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|159041476|ref|YP_001540728.1| - 4.8e-09 36.5 0.5 1.7e-07 31.4 0.1 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|159041476|ref|YP_001540728.1| - 1.1e-07 31.2 4.8 5.1e-06 25.7 0.0 3.7 3 1 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|159041476|ref|YP_001540728.1| - 2.1e-05 25.3 0.3 7.3e-05 23.5 0.0 2.1 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|159041476|ref|YP_001540728.1| - 3.4e-05 23.9 0.0 0.0023 17.9 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|159041476|ref|YP_001540728.1| - 5.6e-05 22.8 0.4 0.00013 21.6 0.3 1.5 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|159041476|ref|YP_001540728.1| - 6.1e-05 22.2 0.1 0.00013 21.2 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|159041476|ref|YP_001540728.1| - 0.00015 21.8 0.0 0.015 15.4 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|159041476|ref|YP_001540728.1| - 0.00031 20.6 0.0 0.00088 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|159041476|ref|YP_001540728.1| - 0.00041 19.3 0.0 0.00085 18.2 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|159041476|ref|YP_001540728.1| - 0.00057 19.3 0.1 0.0012 18.3 0.1 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|159041476|ref|YP_001540728.1| - 0.00069 19.1 0.1 0.0022 17.4 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|159041476|ref|YP_001540728.1| - 0.00091 18.3 1.3 0.0013 17.8 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.1 gi|159041476|ref|YP_001540728.1| - 0.0011 19.2 0.1 0.0066 16.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|159041476|ref|YP_001540728.1| - 0.0018 17.7 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|159041476|ref|YP_001540728.1| - 0.004 16.8 0.0 0.01 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DNA_pol3_delta PF06144.8 gi|159041476|ref|YP_001540728.1| - 0.011 15.2 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit NACHT PF05729.7 gi|159041476|ref|YP_001540728.1| - 0.012 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.4 gi|159041476|ref|YP_001540728.1| - 0.02 13.8 0.0 0.039 12.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|159041476|ref|YP_001540728.1| - 0.029 13.9 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|159041476|ref|YP_001540728.1| - 0.039 13.9 0.0 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|159041476|ref|YP_001540728.1| - 0.04 13.4 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|159041476|ref|YP_001540728.1| - 0.045 12.9 0.2 0.099 11.8 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|159041476|ref|YP_001540728.1| - 0.046 14.0 0.1 0.15 12.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter ResIII PF04851.10 gi|159041476|ref|YP_001540728.1| - 0.051 13.4 0.1 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|159041476|ref|YP_001540728.1| - 0.064 13.1 0.1 0.31 10.9 0.0 2.2 3 0 0 3 3 2 0 AAA domain IPT PF01745.11 gi|159041476|ref|YP_001540728.1| - 0.083 12.0 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase RNA_helicase PF00910.17 gi|159041476|ref|YP_001540728.1| - 0.091 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|159041476|ref|YP_001540728.1| - 0.15 11.6 0.6 1.8 8.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.17 gi|159041477|ref|YP_001540729.1| - 6.1e-19 68.7 0.1 1.2e-18 67.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|159041477|ref|YP_001540729.1| - 7.3e-05 22.7 0.2 0.00021 21.2 0.2 1.8 1 1 0 1 1 1 1 TrkA-N domain ADH_zinc_N PF00107.21 gi|159041477|ref|YP_001540729.1| - 0.0032 17.0 0.1 0.0062 16.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase F420_oxidored PF03807.12 gi|159041477|ref|YP_001540729.1| - 0.0085 16.5 0.2 0.023 15.1 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|159041477|ref|YP_001540729.1| - 0.017 14.9 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 ThiF family NAD_binding_2 PF03446.10 gi|159041477|ref|YP_001540729.1| - 0.022 14.5 0.1 0.05 13.4 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ribosomal_S3_C PF00189.15 gi|159041478|ref|YP_001540730.1| - 3.5e-12 46.3 0.3 3.5e-12 46.3 0.2 1.7 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|159041478|ref|YP_001540730.1| - 3.9e-07 29.5 1.7 3.9e-07 29.5 1.2 2.1 2 1 1 3 3 3 1 KH domain KH_1 PF00013.24 gi|159041478|ref|YP_001540730.1| - 0.018 14.7 0.6 0.018 14.7 0.4 2.6 3 0 0 3 3 3 0 KH domain KH_4 PF13083.1 gi|159041478|ref|YP_001540730.1| - 0.14 11.8 0.3 0.14 11.8 0.2 2.1 2 0 0 2 2 2 0 KH domain DUF4129 PF13559.1 gi|159041479|ref|YP_001540731.1| - 0.002 18.0 0.0 0.0034 17.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) AAA_3 PF07726.6 gi|159041481|ref|YP_001540733.1| - 1.2e-63 212.5 0.0 2e-63 211.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|159041481|ref|YP_001540733.1| - 5e-11 42.4 0.0 1.1e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|159041481|ref|YP_001540733.1| - 1.1e-06 27.7 0.0 0.01 14.6 0.0 2.7 3 0 0 3 3 3 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|159041481|ref|YP_001540733.1| - 4.6e-06 26.2 0.0 1.2e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|159041481|ref|YP_001540733.1| - 6.8e-06 26.3 0.0 1.1e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|159041481|ref|YP_001540733.1| - 0.00011 21.4 0.1 0.064 12.4 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|159041481|ref|YP_001540733.1| - 0.00053 19.1 0.0 0.0039 16.2 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|159041481|ref|YP_001540733.1| - 0.038 14.8 0.0 0.064 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|159041481|ref|YP_001540733.1| - 0.083 12.8 0.0 0.29 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.13 gi|159041482|ref|YP_001540734.1| - 2.1e-23 82.2 0.0 3.4e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF3784 PF12650.2 gi|159041483|ref|YP_001540735.1| - 0.03 14.2 3.4 0.03 14.2 2.4 3.1 2 1 2 4 4 4 0 Domain of unknown function (DUF3784) DUF4407 PF14362.1 gi|159041483|ref|YP_001540735.1| - 0.14 11.0 4.5 0.28 10.0 3.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) UPF0182 PF03699.8 gi|159041483|ref|YP_001540735.1| - 0.67 7.8 9.3 0.77 7.6 6.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) E1-E2_ATPase PF00122.15 gi|159041483|ref|YP_001540735.1| - 8 5.4 10.9 5.1 6.0 1.1 2.2 2 0 0 2 2 2 0 E1-E2 ATPase ADH_N PF08240.7 gi|159041485|ref|YP_001540737.1| - 1.2e-31 108.7 0.9 1.9e-31 108.0 0.6 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159041485|ref|YP_001540737.1| - 5.9e-31 106.7 0.4 8.6e-31 106.1 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|159041485|ref|YP_001540737.1| - 1.3e-13 51.9 0.0 2.6e-13 50.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|159041485|ref|YP_001540737.1| - 1.4e-05 24.7 1.0 2.5e-05 23.9 0.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glyco_hydro_2_N PF02837.13 gi|159041486|ref|YP_001540738.1| - 0.032 13.7 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolases family 2, sugar binding domain MacB_PCD PF12704.2 gi|159041487|ref|YP_001540739.1| - 0.013 15.1 0.2 0.014 14.9 0.1 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain 7TM_GPCR_Srab PF10292.4 gi|159041487|ref|YP_001540739.1| - 0.16 10.6 1.4 0.18 10.4 1.0 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR receptor class ab chemoreceptor DUF2881 PF11087.3 gi|159041487|ref|YP_001540739.1| - 0.25 10.8 2.4 0.58 9.6 1.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2881) HTH_10 PF04967.7 gi|159041488|ref|YP_001540740.1| - 1.3e-13 50.3 0.1 2.9e-13 49.1 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|159041488|ref|YP_001540740.1| - 0.0012 18.1 0.2 0.021 14.1 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|159041488|ref|YP_001540740.1| - 0.0061 16.0 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|159041488|ref|YP_001540740.1| - 0.04 13.4 0.1 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF1537 PF07005.6 gi|159041489|ref|YP_001540741.1| - 2.9e-10 40.1 0.0 1.1e-07 31.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF1537 UPF0180 PF03698.8 gi|159041489|ref|YP_001540741.1| - 0.0088 15.8 0.5 8.5 6.2 0.0 3.5 2 1 1 3 3 3 2 Uncharacterised protein family (UPF0180) CPSase_L_chain PF00289.17 gi|159041489|ref|YP_001540741.1| - 0.059 13.4 0.1 0.81 9.8 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AAA PF00004.24 gi|159041490|ref|YP_001540742.1| - 1.5e-15 57.5 0.0 7.6e-15 55.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|159041490|ref|YP_001540742.1| - 3.8e-13 49.4 0.0 1.2e-10 41.2 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|159041490|ref|YP_001540742.1| - 2e-12 46.9 0.1 4.4e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|159041490|ref|YP_001540742.1| - 3.9e-09 36.7 0.1 2.4e-05 24.4 0.0 3.1 1 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|159041490|ref|YP_001540742.1| - 9.8e-08 31.3 0.0 8.1e-07 28.3 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|159041490|ref|YP_001540742.1| - 5e-07 29.3 0.0 1.2e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|159041490|ref|YP_001540742.1| - 9.6e-07 28.7 0.0 2.1e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041490|ref|YP_001540742.1| - 1.9e-06 27.9 0.1 0.00028 20.9 0.0 3.0 1 1 3 4 4 4 1 AAA ATPase domain Rad17 PF03215.10 gi|159041490|ref|YP_001540742.1| - 7.9e-06 24.8 0.0 0.01 14.5 0.0 2.2 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|159041490|ref|YP_001540742.1| - 1.9e-05 24.1 0.2 0.00049 19.5 0.1 2.7 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|159041490|ref|YP_001540742.1| - 2.1e-05 24.8 0.0 0.00023 21.4 0.0 2.5 1 1 1 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|159041490|ref|YP_001540742.1| - 2.1e-05 25.2 0.0 7.4e-05 23.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|159041490|ref|YP_001540742.1| - 4e-05 23.2 0.0 7.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|159041490|ref|YP_001540742.1| - 0.00012 21.6 0.0 0.0003 20.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|159041490|ref|YP_001540742.1| - 0.0002 20.8 0.0 0.00051 19.4 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|159041490|ref|YP_001540742.1| - 0.00024 20.8 0.1 0.18 11.4 0.0 2.5 2 1 1 3 3 3 2 Archaeal ATPase AAA_10 PF12846.2 gi|159041490|ref|YP_001540742.1| - 0.0005 19.6 0.2 0.029 13.7 0.2 2.8 1 1 0 1 1 1 1 AAA-like domain DEAD PF00270.24 gi|159041490|ref|YP_001540742.1| - 0.00083 18.8 1.1 0.094 12.2 0.0 3.0 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|159041490|ref|YP_001540742.1| - 0.0011 18.6 0.1 0.013 15.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|159041490|ref|YP_001540742.1| - 0.0026 17.9 0.0 0.007 16.5 0.0 1.8 1 1 0 1 1 1 1 RNA helicase ArgK PF03308.11 gi|159041490|ref|YP_001540742.1| - 0.0027 16.5 1.3 0.011 14.4 0.0 2.5 2 1 0 2 2 2 1 ArgK protein TIP49 PF06068.8 gi|159041490|ref|YP_001540742.1| - 0.0041 15.8 0.0 0.18 10.4 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_28 PF13521.1 gi|159041490|ref|YP_001540742.1| - 0.0051 16.7 0.0 0.018 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|159041490|ref|YP_001540742.1| - 0.0055 16.2 0.0 0.0095 15.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_33 PF13671.1 gi|159041490|ref|YP_001540742.1| - 0.0075 16.1 0.0 0.026 14.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|159041490|ref|YP_001540742.1| - 0.015 14.4 0.0 0.14 11.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|159041490|ref|YP_001540742.1| - 0.03 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|159041490|ref|YP_001540742.1| - 0.034 13.3 0.0 5.3 6.2 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_11 PF13086.1 gi|159041490|ref|YP_001540742.1| - 0.048 13.2 0.0 0.11 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|159041490|ref|YP_001540742.1| - 0.085 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.5 gi|159041490|ref|YP_001540742.1| - 0.098 11.8 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Rad17 PF03215.10 gi|159041491|ref|YP_001540743.1| - 5.8e-16 58.2 2.3 7.7e-10 38.0 0.0 3.6 3 1 0 4 4 4 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|159041491|ref|YP_001540743.1| - 1.4e-13 51.1 0.0 4.4e-13 49.5 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|159041491|ref|YP_001540743.1| - 1.4e-09 37.4 0.0 1.5e-07 30.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|159041491|ref|YP_001540743.1| - 4.2e-07 29.1 0.0 8.3e-07 28.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|159041491|ref|YP_001540743.1| - 6.9e-07 28.3 0.2 0.013 14.2 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus AAA_22 PF13401.1 gi|159041491|ref|YP_001540743.1| - 7.6e-07 29.3 0.3 2.1e-05 24.6 0.0 2.9 2 1 2 4 4 3 1 AAA domain AAA_19 PF13245.1 gi|159041491|ref|YP_001540743.1| - 1.8e-05 24.3 0.0 4.5e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|159041491|ref|YP_001540743.1| - 1.9e-05 25.4 0.0 4.5e-05 24.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159041491|ref|YP_001540743.1| - 3.3e-05 23.9 0.0 0.00012 22.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|159041491|ref|YP_001540743.1| - 6.7e-05 22.6 0.0 0.00024 20.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|159041491|ref|YP_001540743.1| - 8.4e-05 22.4 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|159041491|ref|YP_001540743.1| - 0.00013 20.9 0.0 0.00026 19.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|159041491|ref|YP_001540743.1| - 0.00091 18.8 0.6 0.0091 15.5 0.0 2.6 2 1 1 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|159041491|ref|YP_001540743.1| - 0.0011 18.3 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DNA_pol3_delta PF06144.8 gi|159041491|ref|YP_001540743.1| - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_28 PF13521.1 gi|159041491|ref|YP_001540743.1| - 0.0019 18.1 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|159041491|ref|YP_001540743.1| - 0.0029 16.7 0.0 0.0058 15.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|159041491|ref|YP_001540743.1| - 0.0051 16.7 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|159041491|ref|YP_001540743.1| - 0.0061 16.8 0.1 0.021 15.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|159041491|ref|YP_001540743.1| - 0.0075 15.6 0.0 0.028 13.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|159041491|ref|YP_001540743.1| - 0.0078 15.8 0.1 0.055 13.1 0.0 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein RNA_helicase PF00910.17 gi|159041491|ref|YP_001540743.1| - 0.0091 16.1 0.0 0.029 14.5 0.0 1.9 2 1 0 2 2 1 1 RNA helicase AAA_29 PF13555.1 gi|159041491|ref|YP_001540743.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RFC1 PF08519.7 gi|159041491|ref|YP_001540743.1| - 0.016 14.9 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Replication factor RFC1 C terminal domain Mg_chelatase PF01078.16 gi|159041491|ref|YP_001540743.1| - 0.016 14.3 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|159041491|ref|YP_001540743.1| - 0.021 13.9 0.0 0.048 12.7 0.0 1.6 1 0 0 1 1 1 0 KaiC NTPase_1 PF03266.10 gi|159041491|ref|YP_001540743.1| - 0.023 14.4 0.0 0.056 13.1 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_11 PF13086.1 gi|159041491|ref|YP_001540743.1| - 0.028 14.0 0.0 0.042 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|159041491|ref|YP_001540743.1| - 0.04 13.5 0.0 0.22 11.1 0.0 2.3 3 0 0 3 3 3 0 NACHT domain AAA_2 PF07724.9 gi|159041491|ref|YP_001540743.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Parvo_NS1 PF01057.12 gi|159041491|ref|YP_001540743.1| - 0.055 12.3 0.0 0.17 10.6 0.0 1.7 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 UPF0079 PF02367.12 gi|159041491|ref|YP_001540743.1| - 0.075 12.6 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|159041491|ref|YP_001540743.1| - 0.078 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_3 PF07726.6 gi|159041491|ref|YP_001540743.1| - 0.09 12.3 0.0 0.21 11.1 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Ubie_methyltran PF01209.13 gi|159041492|ref|YP_001540744.1| - 9.7e-16 57.5 0.0 1.2e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|159041492|ref|YP_001540744.1| - 8.5e-14 51.8 0.0 1.2e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041492|ref|YP_001540744.1| - 2.8e-08 34.0 0.0 3.9e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041492|ref|YP_001540744.1| - 1.8e-07 30.8 0.0 2.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159041492|ref|YP_001540744.1| - 3.9e-06 26.6 0.0 5.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041492|ref|YP_001540744.1| - 0.0001 22.8 0.0 0.0002 21.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159041492|ref|YP_001540744.1| - 0.00029 21.2 0.0 0.00049 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|159041492|ref|YP_001540744.1| - 0.0089 15.0 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|159041492|ref|YP_001540744.1| - 0.043 13.1 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|159041492|ref|YP_001540744.1| - 0.062 12.9 0.0 0.12 11.9 0.0 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF3473 PF11959.3 gi|159041493|ref|YP_001540745.1| - 0.047 13.1 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3473) Cdc6_C PF09079.6 gi|159041494|ref|YP_001540746.1| - 2.3e-14 52.8 1.2 8.3e-14 51.0 0.1 2.5 3 0 0 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|159041494|ref|YP_001540746.1| - 6.5e-10 39.2 0.0 2.1e-09 37.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|159041494|ref|YP_001540746.1| - 5.1e-07 29.6 0.1 1.3e-06 28.3 0.1 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|159041494|ref|YP_001540746.1| - 6.6e-05 22.9 0.0 0.00037 20.5 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain ResIII PF04851.10 gi|159041494|ref|YP_001540746.1| - 0.004 16.9 0.0 0.0075 16.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|159041494|ref|YP_001540746.1| - 0.032 13.3 0.0 0.12 11.5 0.0 1.9 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.21 gi|159041494|ref|YP_001540746.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain HTH_5 PF01022.15 gi|159041495|ref|YP_001540747.1| - 9.8e-07 28.3 0.3 2.3e-06 27.1 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|159041495|ref|YP_001540747.1| - 2.5e-06 26.7 1.4 6.7e-06 25.4 1.2 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|159041495|ref|YP_001540747.1| - 0.00035 20.3 0.0 0.0017 18.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|159041495|ref|YP_001540747.1| - 0.00039 20.0 0.3 0.00075 19.1 0.2 1.4 1 0 0 1 1 1 1 MarR family DUF1495 PF07381.6 gi|159041495|ref|YP_001540747.1| - 0.017 14.8 0.2 0.034 13.8 0.1 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|159041495|ref|YP_001540747.1| - 0.017 14.8 0.2 0.03 14.0 0.1 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2806 PF10987.3 gi|159041495|ref|YP_001540747.1| - 0.032 13.7 0.5 0.036 13.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2806) HTH_34 PF13601.1 gi|159041495|ref|YP_001540747.1| - 0.046 13.7 0.3 0.062 13.3 0.2 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain AA_permease_2 PF13520.1 gi|159041496|ref|YP_001540748.1| - 6.2e-19 67.8 55.0 6.2e-19 67.8 38.1 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|159041496|ref|YP_001540748.1| - 1.9e-16 59.5 40.6 1.9e-16 59.5 28.1 2.7 1 1 1 3 3 3 1 Amino acid permease GCD14 PF08704.5 gi|159041497|ref|YP_001540749.1| - 1.2e-30 106.8 0.0 1.8e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|159041497|ref|YP_001540749.1| - 1e-12 48.0 0.1 1.7e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|159041497|ref|YP_001540749.1| - 3.4e-11 42.9 0.0 6.9e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|159041497|ref|YP_001540749.1| - 7.6e-09 34.9 0.0 1.3e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|159041497|ref|YP_001540749.1| - 1.4e-08 35.3 0.0 4.2e-08 33.7 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159041497|ref|YP_001540749.1| - 9.7e-08 32.0 0.0 2.2e-07 30.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|159041497|ref|YP_001540749.1| - 7.6e-07 28.4 0.0 1.8e-06 27.1 0.0 1.6 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|159041497|ref|YP_001540749.1| - 4.3e-06 27.1 0.0 8.5e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159041497|ref|YP_001540749.1| - 0.00029 20.0 0.0 0.00041 19.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|159041497|ref|YP_001540749.1| - 0.0021 17.4 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|159041497|ref|YP_001540749.1| - 0.0087 16.4 0.0 0.02 15.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|159041497|ref|YP_001540749.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.5 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.1 gi|159041497|ref|YP_001540749.1| - 0.044 14.6 0.0 0.075 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159041497|ref|YP_001540749.1| - 0.051 13.2 0.0 0.27 10.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|159041497|ref|YP_001540749.1| - 0.089 11.8 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|159041497|ref|YP_001540749.1| - 0.095 12.2 0.0 0.24 10.9 0.0 1.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Gcd10p PF04189.8 gi|159041497|ref|YP_001540749.1| - 0.11 11.6 0.4 0.3 10.1 0.0 1.8 2 0 0 2 2 2 0 Gcd10p family PcrB PF01884.12 gi|159041498|ref|YP_001540750.1| - 1.4e-67 227.3 1.6 1.6e-67 227.1 1.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|159041498|ref|YP_001540750.1| - 1.5e-05 24.4 0.1 5.5e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|159041498|ref|YP_001540750.1| - 0.0017 16.9 1.0 0.0069 14.9 0.1 2.1 2 1 0 2 2 2 1 Tryptophan synthase alpha chain NanE PF04131.9 gi|159041498|ref|YP_001540750.1| - 0.006 15.5 0.3 0.34 9.8 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|159041498|ref|YP_001540750.1| - 0.018 14.0 0.2 0.029 13.3 0.1 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|159041498|ref|YP_001540750.1| - 0.034 13.2 0.0 0.07 12.2 0.0 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family PS_pyruv_trans PF04230.8 gi|159041498|ref|YP_001540750.1| - 0.092 12.4 0.1 0.63 9.6 0.0 2.0 2 0 0 2 2 2 0 Polysaccharide pyruvyl transferase Elf1 PF05129.8 gi|159041499|ref|YP_001540751.1| - 1.7e-18 66.1 0.3 2.7e-18 65.4 0.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|159041499|ref|YP_001540751.1| - 0.0045 17.2 0.1 0.0074 16.5 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|159041499|ref|YP_001540751.1| - 0.034 13.8 0.2 0.062 12.9 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|159041499|ref|YP_001540751.1| - 0.041 14.1 0.7 0.71 10.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain FdhE PF04216.7 gi|159041499|ref|YP_001540751.1| - 0.045 13.4 0.2 0.06 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Cys_rich_CPXG PF14255.1 gi|159041499|ref|YP_001540751.1| - 0.069 12.9 2.0 0.07 12.9 0.2 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_5 PF13719.1 gi|159041499|ref|YP_001540751.1| - 0.095 12.2 4.1 0.42 10.2 2.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|159041499|ref|YP_001540751.1| - 0.1 11.9 2.4 0.28 10.5 1.6 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding YABBY PF04690.8 gi|159041499|ref|YP_001540751.1| - 0.11 12.7 0.1 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 YABBY protein zf-ribbon_3 PF13248.1 gi|159041499|ref|YP_001540751.1| - 0.13 11.5 1.1 1.4 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041499|ref|YP_001540751.1| - 0.15 11.7 4.0 0.72 9.6 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|159041499|ref|YP_001540751.1| - 0.22 11.3 1.0 0.57 10.0 0.7 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-Di19 PF05605.7 gi|159041499|ref|YP_001540751.1| - 0.36 10.9 3.1 3.2 7.9 2.1 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Peptidase_M1 PF01433.15 gi|159041500|ref|YP_001540752.1| - 5.4e-60 203.5 0.0 9.9e-60 202.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|159041500|ref|YP_001540752.1| - 7.2e-33 112.7 16.9 4.9e-14 52.3 0.8 4.1 1 1 3 4 4 4 4 HEAT repeats Peptidase_MA_2 PF13485.1 gi|159041500|ref|YP_001540752.1| - 2.7e-15 56.5 1.4 6.4e-15 55.3 0.6 2.0 2 0 0 2 2 2 1 Peptidase MA superfamily HEAT_PBS PF03130.11 gi|159041500|ref|YP_001540752.1| - 9e-09 35.0 18.2 0.17 12.4 0.5 6.6 6 0 0 6 6 6 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|159041500|ref|YP_001540752.1| - 0.00045 20.0 8.8 30 5.0 0.1 6.8 7 0 0 7 7 7 0 HEAT repeat HEAT_EZ PF13513.1 gi|159041500|ref|YP_001540752.1| - 0.0006 20.2 16.0 3 8.4 0.9 5.7 2 2 3 5 5 5 2 HEAT-like repeat Vitellogenin_N PF01347.17 gi|159041500|ref|YP_001540752.1| - 0.0012 17.1 0.0 0.31 9.2 0.0 2.2 1 1 1 2 2 2 2 Lipoprotein amino terminal region HSCB_C PF07743.8 gi|159041500|ref|YP_001540752.1| - 5.5 7.5 6.4 2.5 8.5 0.8 2.9 2 1 1 3 3 3 0 HSCB C-terminal oligomerisation domain Lyase_1 PF00206.15 gi|159041501|ref|YP_001540753.1| - 1.6e-90 303.4 0.0 2e-90 303.1 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|159041501|ref|YP_001540753.1| - 1.5e-13 50.5 0.0 3.8e-13 49.2 0.0 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus UPF0147 PF03685.8 gi|159041502|ref|YP_001540754.1| - 4.6e-32 109.7 0.5 5.2e-32 109.5 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) QRPTase_C PF01729.14 gi|159041503|ref|YP_001540755.1| - 4.6e-16 58.7 0.0 6.3e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|159041503|ref|YP_001540755.1| - 2.3e-08 33.7 0.0 4.2e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase PF04095.11 gi|159041503|ref|YP_001540755.1| - 0.00084 18.6 0.0 0.0029 16.9 0.0 1.7 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family DHDPS PF00701.17 gi|159041505|ref|YP_001540757.1| - 7e-50 169.2 0.0 7.8e-50 169.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AAA_25 PF13481.1 gi|159041505|ref|YP_001540757.1| - 0.13 11.6 0.0 0.32 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Cellulase PF00150.13 gi|159041506|ref|YP_001540758.1| - 4.3e-08 32.6 0.0 7.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF4434 PF14488.1 gi|159041506|ref|YP_001540758.1| - 2.6e-05 24.0 0.0 4.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) Glyco_hydro_42 PF02449.10 gi|159041506|ref|YP_001540758.1| - 0.00012 21.2 0.0 0.024 13.7 0.0 2.2 2 0 0 2 2 2 2 Beta-galactosidase Glyco_hydro_35 PF01301.14 gi|159041506|ref|YP_001540758.1| - 0.00032 20.1 0.0 0.00053 19.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42M PF08532.5 gi|159041506|ref|YP_001540758.1| - 0.013 14.6 0.0 0.032 13.3 0.0 1.6 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain Cellulase-like PF12876.2 gi|159041506|ref|YP_001540758.1| - 0.023 15.1 0.0 0.092 13.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-binding cellulase-like Rhomboid PF01694.17 gi|159041507|ref|YP_001540759.1| - 1.7e-22 80.0 16.6 1.7e-22 80.0 11.5 1.8 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|159041507|ref|YP_001540759.1| - 8.8e-07 29.1 0.1 8.8e-07 29.1 0.1 2.2 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) GTP_EFTU PF00009.22 gi|159041508|ref|YP_001540760.1| - 1.9e-55 187.2 0.0 2.9e-55 186.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|159041508|ref|YP_001540760.1| - 5.8e-31 106.5 0.0 1.7e-30 105.0 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|159041508|ref|YP_001540760.1| - 4.9e-23 80.7 0.0 1.1e-22 79.6 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|159041508|ref|YP_001540760.1| - 1.6e-19 69.5 0.0 4.3e-19 68.1 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|159041508|ref|YP_001540760.1| - 1.2e-16 60.5 1.0 4.7e-16 58.6 0.7 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 TauE PF01925.14 gi|159041510|ref|YP_001540762.1| - 2.5e-38 131.9 31.4 2.5e-38 131.9 21.8 2.5 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|159041510|ref|YP_001540762.1| - 3.8e-22 77.9 16.1 3.8e-22 77.9 11.2 3.1 3 1 0 3 3 3 1 Protein of unknown function (DUF1634) TauE PF01925.14 gi|159041511|ref|YP_001540763.1| - 8.7e-31 107.2 38.3 1.1e-30 106.8 26.5 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|159041512|ref|YP_001540764.1| - 4.6e-06 26.1 8.3 6.7e-06 25.6 5.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) SURF4 PF02077.10 gi|159041512|ref|YP_001540764.1| - 0.63 9.3 6.7 0.54 9.5 0.2 2.0 2 0 0 2 2 2 0 SURF4 family Rhomboid PF01694.17 gi|159041512|ref|YP_001540764.1| - 0.79 9.7 6.7 7.7 6.5 2.1 2.0 2 0 0 2 2 2 0 Rhomboid family TauE PF01925.14 gi|159041513|ref|YP_001540765.1| - 1.9e-39 135.5 28.7 1.9e-39 135.5 19.9 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|159041514|ref|YP_001540766.1| - 5.5e-29 99.8 13.7 6.4e-29 99.6 9.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) DUF1430 PF07242.6 gi|159041514|ref|YP_001540766.1| - 4.8 7.3 11.9 1.2 9.2 4.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1430) PALP PF00291.20 gi|159041515|ref|YP_001540767.1| - 8.6e-85 284.6 3.1 1e-84 284.3 2.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|159041515|ref|YP_001540767.1| - 6.6e-08 31.8 0.1 2.5e-07 30.0 0.0 2.1 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|159041515|ref|YP_001540767.1| - 0.0051 16.4 0.0 0.017 14.7 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_5 PF13710.1 gi|159041515|ref|YP_001540767.1| - 0.039 13.7 0.1 0.11 12.2 0.1 1.8 1 1 0 1 1 1 0 ACT domain UPF0227 PF05728.7 gi|159041515|ref|YP_001540767.1| - 0.058 13.1 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Reprolysin_3 PF13582.1 gi|159041515|ref|YP_001540767.1| - 0.064 13.7 1.5 0.094 13.2 0.0 2.0 2 1 1 3 3 3 0 Metallo-peptidase family M12B Reprolysin-like Ribosomal_L29 PF00831.18 gi|159041516|ref|YP_001540768.1| - 1.4e-15 56.6 1.3 1.4e-15 56.6 0.9 1.9 2 0 0 2 2 2 1 Ribosomal L29 protein HTH_23 PF13384.1 gi|159041516|ref|YP_001540768.1| - 0.0012 18.4 1.0 0.0024 17.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|159041516|ref|YP_001540768.1| - 0.0065 16.0 0.1 0.0065 16.0 0.0 1.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|159041516|ref|YP_001540768.1| - 0.0075 15.8 0.1 0.035 13.6 0.0 2.0 1 1 1 2 2 2 1 HTH DNA binding domain Trp_repressor PF01371.14 gi|159041516|ref|YP_001540768.1| - 0.016 15.1 0.2 0.029 14.2 0.2 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_3 PF01381.17 gi|159041516|ref|YP_001540768.1| - 0.028 14.2 0.6 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix HTH_31 PF13560.1 gi|159041516|ref|YP_001540768.1| - 0.032 14.4 0.1 0.16 12.1 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_35 PF13693.1 gi|159041516|ref|YP_001540768.1| - 0.045 13.5 0.2 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|159041516|ref|YP_001540768.1| - 0.064 13.4 0.7 0.11 12.7 0.1 1.8 2 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain PAX PF00292.13 gi|159041516|ref|YP_001540768.1| - 0.093 12.4 0.1 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 'Paired box' domain DUF2299 PF10061.4 gi|159041516|ref|YP_001540768.1| - 0.11 11.9 0.4 0.16 11.3 0.3 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) HTH_Tnp_1 PF01527.15 gi|159041516|ref|YP_001540768.1| - 0.12 12.2 0.0 0.8 9.7 0.0 2.2 3 0 0 3 3 3 0 Transposase Pox_A_type_inc PF04508.7 gi|159041516|ref|YP_001540768.1| - 0.16 11.8 0.5 0.16 11.8 0.4 3.3 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat GFO_IDH_MocA PF01408.17 gi|159041517|ref|YP_001540769.1| - 5.2e-18 65.7 0.0 1.3e-17 64.4 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041517|ref|YP_001540769.1| - 0.00016 21.4 0.3 0.00023 20.9 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.15 gi|159041517|ref|YP_001540769.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AP_endonuc_2 PF01261.19 gi|159041518|ref|YP_001540770.1| - 1.6e-19 70.0 0.0 2.1e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel H_PPase PF03030.11 gi|159041519|ref|YP_001540771.1| - 2.2e-242 806.1 34.1 2.6e-242 805.9 23.6 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Peptidase_M42 PF05343.9 gi|159041520|ref|YP_001540772.1| - 1.3e-104 349.0 0.1 1.5e-104 348.8 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|159041520|ref|YP_001540772.1| - 1e-09 38.1 0.0 1.7e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|159041520|ref|YP_001540772.1| - 4.4e-05 23.2 0.0 0.0002 21.1 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|159041520|ref|YP_001540772.1| - 0.061 11.8 0.0 0.12 10.8 0.0 1.6 1 1 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) SM-ATX PF14438.1 gi|159041520|ref|YP_001540772.1| - 0.087 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Ataxin 2 SM domain Peptidase_M19 PF01244.16 gi|159041521|ref|YP_001540773.1| - 3.4e-88 295.6 0.0 3.9e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|159041521|ref|YP_001540773.1| - 0.005 16.4 0.0 0.0069 15.9 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase Spt5-NGN PF03439.8 gi|159041522|ref|YP_001540774.1| - 4.2e-18 64.8 0.4 8.9e-18 63.8 0.1 1.7 2 1 1 3 3 3 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|159041522|ref|YP_001540774.1| - 7.8e-05 22.2 0.8 0.00029 20.4 0.3 2.1 2 0 0 2 2 2 1 KOW motif RIO1 PF01163.17 gi|159041523|ref|YP_001540775.1| - 6e-06 25.7 0.1 8.9e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|159041523|ref|YP_001540775.1| - 0.0017 17.5 0.0 0.0035 16.5 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|159041523|ref|YP_001540775.1| - 0.03 14.0 0.0 0.55 9.9 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|159041523|ref|YP_001540775.1| - 0.04 13.0 0.0 0.048 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase Choline_kinase PF01633.15 gi|159041523|ref|YP_001540775.1| - 0.12 11.8 0.0 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Choline/ethanolamine kinase THUMP PF02926.12 gi|159041524|ref|YP_001540776.1| - 1e-08 35.1 0.4 2.7e-08 33.8 0.3 1.7 1 1 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|159041525|ref|YP_001540777.1| - 2.1e-12 47.1 0.0 2.9e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041525|ref|YP_001540777.1| - 3.4e-10 40.5 0.0 5.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|159041525|ref|YP_001540777.1| - 7e-08 31.7 0.0 8.9e-08 31.3 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Cons_hypoth95 PF03602.10 gi|159041525|ref|YP_001540777.1| - 4.3e-07 29.4 0.0 7.5e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|159041525|ref|YP_001540777.1| - 8e-07 28.5 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|159041525|ref|YP_001540777.1| - 9.4e-05 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|159041525|ref|YP_001540777.1| - 0.0097 16.7 0.0 0.02 15.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|159041525|ref|YP_001540777.1| - 0.022 14.4 0.0 0.062 12.9 0.0 1.7 1 1 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|159041525|ref|YP_001540777.1| - 0.051 14.0 0.0 0.28 11.7 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain PrmA PF06325.8 gi|159041525|ref|YP_001540777.1| - 0.068 12.2 0.0 0.095 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|159041525|ref|YP_001540777.1| - 0.085 13.2 0.0 0.66 10.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|159041525|ref|YP_001540777.1| - 0.15 11.5 0.1 0.53 9.7 0.0 1.9 3 0 0 3 3 3 0 DNA methylase MT PF12777.2 gi|159041527|ref|YP_001540779.1| - 0.034 12.8 0.0 0.041 12.6 0.0 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor UbiA PF01040.13 gi|159041528|ref|YP_001540780.1| - 4.1e-28 98.2 24.6 4.1e-28 98.2 17.1 1.6 1 1 1 2 2 2 1 UbiA prenyltransferase family DUF1641 PF07849.6 gi|159041529|ref|YP_001540781.1| - 5.2e-13 48.3 0.0 8.8e-13 47.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Herpes_UL95 PF03038.9 gi|159041529|ref|YP_001540781.1| - 0.031 13.1 0.1 0.039 12.8 0.1 1.1 1 0 0 1 1 1 0 UL95 family AIRS_C PF02769.17 gi|159041530|ref|YP_001540782.1| - 1.4e-18 67.3 0.2 2.4e-18 66.5 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|159041530|ref|YP_001540782.1| - 6.1e-12 45.6 0.1 1.3e-11 44.5 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain CbiA PF01656.18 gi|159041531|ref|YP_001540783.1| - 5.5e-13 48.7 0.0 8e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|159041531|ref|YP_001540783.1| - 2.3e-06 27.6 0.0 0.00031 20.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|159041531|ref|YP_001540783.1| - 1e-05 24.7 0.0 0.00053 19.1 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase XPG_N PF00752.12 gi|159041531|ref|YP_001540783.1| - 0.017 15.3 0.0 0.037 14.2 0.0 1.5 1 0 0 1 1 1 0 XPG N-terminal domain AAA_25 PF13481.1 gi|159041531|ref|YP_001540783.1| - 0.072 12.4 0.0 0.16 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|159041531|ref|YP_001540783.1| - 0.11 12.3 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|159041531|ref|YP_001540783.1| - 0.11 11.8 0.1 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain DUF87 PF01935.12 gi|159041531|ref|YP_001540783.1| - 0.15 11.8 1.0 0.49 10.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 Lon_C PF05362.8 gi|159041533|ref|YP_001540785.1| - 3.1e-11 42.9 0.1 5.4e-11 42.1 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|159041533|ref|YP_001540785.1| - 0.014 14.8 0.1 0.14 11.7 0.0 2.3 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase HsbA PF12296.3 gi|159041533|ref|YP_001540785.1| - 4.2 7.2 11.5 1 9.2 0.5 2.8 3 0 0 3 3 3 0 Hydrophobic surface binding protein A AA_permease PF00324.16 gi|159041534|ref|YP_001540786.1| - 2.4e-17 62.4 50.4 3.5e-17 61.9 35.0 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|159041534|ref|YP_001540786.1| - 4.4e-15 55.1 57.0 6.9e-15 54.5 39.3 1.4 1 1 0 1 1 1 1 Amino acid permease GHMP_kinases_N PF00288.21 gi|159041536|ref|YP_001540788.1| - 5.6e-16 58.3 1.9 2.2e-15 56.4 1.3 2.1 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|159041536|ref|YP_001540788.1| - 8.2e-13 48.3 1.3 8.2e-13 48.3 0.9 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|159041536|ref|YP_001540788.1| - 0.0034 16.6 0.0 0.0088 15.2 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature CarboxypepD_reg PF13620.1 gi|159041537|ref|YP_001540789.1| - 0.00048 20.1 1.0 0.00048 20.1 0.7 5.0 5 1 0 5 5 5 2 Carboxypeptidase regulatory-like domain Ribosomal_L16 PF00252.13 gi|159041538|ref|YP_001540790.1| - 9.6e-36 122.4 0.3 1.2e-35 122.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1680 PF07944.7 gi|159041539|ref|YP_001540791.1| - 3.1e-156 520.7 0.0 3.5e-156 520.5 0.0 1.0 1 0 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) Lactamase_B PF00753.22 gi|159041540|ref|YP_001540792.1| - 9.3e-12 44.9 0.7 1.2e-11 44.6 0.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|159041540|ref|YP_001540792.1| - 6.1e-07 29.1 0.0 9.4e-07 28.5 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Toxin_6 PF05453.7 gi|159041540|ref|YP_001540792.1| - 0.059 13.6 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 BmTXKS1/BmP02 toxin family Epimerase PF01370.16 gi|159041542|ref|YP_001540794.1| - 4.3e-08 32.8 0.0 5.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|159041542|ref|YP_001540794.1| - 0.00035 19.9 0.0 0.0006 19.1 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.1 gi|159041542|ref|YP_001540794.1| - 0.0004 20.4 0.0 0.00059 19.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding AAA PF00004.24 gi|159041543|ref|YP_001540795.1| - 1.4e-99 329.4 0.0 1.2e-49 167.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|159041543|ref|YP_001540795.1| - 1.4e-30 105.0 0.1 1.3e-29 102.0 0.4 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|159041543|ref|YP_001540795.1| - 1.6e-15 56.7 0.0 4.3e-07 29.2 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|159041543|ref|YP_001540795.1| - 8.7e-14 51.7 0.2 6.9e-06 26.2 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|159041543|ref|YP_001540795.1| - 3.6e-13 49.6 0.0 1e-05 25.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|159041543|ref|YP_001540795.1| - 3.9e-13 49.8 0.1 4.9e-06 26.6 0.0 3.5 3 1 0 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|159041543|ref|YP_001540795.1| - 8.8e-13 49.1 0.1 6e-06 27.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|159041543|ref|YP_001540795.1| - 2.8e-12 46.8 0.0 9.1e-06 25.6 0.0 3.2 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|159041543|ref|YP_001540795.1| - 1.9e-11 43.8 2.5 0.00015 21.5 0.3 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|159041543|ref|YP_001540795.1| - 2.9e-10 39.4 0.0 0.00038 19.2 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|159041543|ref|YP_001540795.1| - 3.4e-10 39.9 0.0 0.00011 22.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|159041543|ref|YP_001540795.1| - 2.5e-09 36.8 0.2 0.0015 17.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|159041543|ref|YP_001540795.1| - 3.6e-09 36.0 0.0 0.0012 18.0 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.1 gi|159041543|ref|YP_001540795.1| - 4.2e-09 36.0 0.8 0.0011 18.6 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_28 PF13521.1 gi|159041543|ref|YP_001540795.1| - 3.6e-08 33.5 0.0 0.0062 16.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|159041543|ref|YP_001540795.1| - 6.3e-08 32.9 0.0 0.018 15.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|159041543|ref|YP_001540795.1| - 5.4e-07 28.9 0.6 0.032 13.3 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|159041543|ref|YP_001540795.1| - 2.6e-06 27.5 0.0 0.1 12.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|159041543|ref|YP_001540795.1| - 3.1e-06 26.7 0.1 0.099 12.1 0.0 3.2 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|159041543|ref|YP_001540795.1| - 7.7e-06 25.2 0.2 0.1 11.8 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.17 gi|159041543|ref|YP_001540795.1| - 1.4e-05 25.2 0.0 0.24 11.6 0.0 2.9 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|159041543|ref|YP_001540795.1| - 1.9e-05 24.9 0.0 0.26 11.5 0.0 3.0 3 0 0 3 3 3 2 ABC transporter DUF815 PF05673.8 gi|159041543|ref|YP_001540795.1| - 3.2e-05 22.9 0.0 0.19 10.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|159041543|ref|YP_001540795.1| - 6.5e-05 22.6 0.9 0.61 9.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain NACHT PF05729.7 gi|159041543|ref|YP_001540795.1| - 9.8e-05 22.0 0.4 0.55 9.8 0.0 3.5 3 0 0 3 3 3 1 NACHT domain Arch_ATPase PF01637.13 gi|159041543|ref|YP_001540795.1| - 0.00011 21.9 0.4 0.51 9.9 0.0 3.7 2 2 1 3 3 3 1 Archaeal ATPase CDC48_2 PF02933.12 gi|159041543|ref|YP_001540795.1| - 0.00017 21.1 0.0 0.00079 19.0 0.0 2.1 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_25 PF13481.1 gi|159041543|ref|YP_001540795.1| - 0.00023 20.6 9.6 0.93 8.8 0.2 4.2 2 2 1 4 4 4 2 AAA domain AAA_3 PF07726.6 gi|159041543|ref|YP_001540795.1| - 0.00027 20.5 0.0 0.78 9.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Vps4_C PF09336.5 gi|159041543|ref|YP_001540795.1| - 0.00033 20.4 5.4 0.61 10.0 0.0 4.2 4 0 0 4 4 4 2 Vps4 C terminal oligomerisation domain Parvo_NS1 PF01057.12 gi|159041543|ref|YP_001540795.1| - 0.00045 19.1 0.0 0.78 8.5 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|159041543|ref|YP_001540795.1| - 0.00071 18.7 5.4 0.54 9.3 0.0 3.9 3 1 0 4 4 4 2 KaiC NB-ARC PF00931.17 gi|159041543|ref|YP_001540795.1| - 0.00074 18.4 0.1 1.2 7.8 0.0 2.7 3 0 0 3 3 3 2 NB-ARC domain DUF2075 PF09848.4 gi|159041543|ref|YP_001540795.1| - 0.0012 17.8 0.3 0.85 8.5 0.0 2.8 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|159041543|ref|YP_001540795.1| - 0.0018 17.8 0.0 1.1 8.8 0.0 3.0 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|159041543|ref|YP_001540795.1| - 0.0018 17.9 2.3 3.4 7.3 0.0 3.9 3 1 1 4 4 3 0 NTPase Bac_DnaA PF00308.13 gi|159041543|ref|YP_001540795.1| - 0.0022 17.6 0.0 6 6.4 0.0 3.3 3 1 0 3 3 3 0 Bacterial dnaA protein Viral_helicase1 PF01443.13 gi|159041543|ref|YP_001540795.1| - 0.0023 17.4 0.0 0.073 12.5 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|159041543|ref|YP_001540795.1| - 0.0038 17.1 0.0 2.5 7.9 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase T2SE PF00437.15 gi|159041543|ref|YP_001540795.1| - 0.0041 16.0 0.0 1.8 7.4 0.0 2.7 2 0 0 2 2 2 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|159041543|ref|YP_001540795.1| - 0.0046 16.5 0.1 4 7.0 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|159041543|ref|YP_001540795.1| - 0.0052 16.3 0.0 2.3 7.6 0.0 2.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.4 gi|159041543|ref|YP_001540795.1| - 0.0056 16.1 0.0 2.1 7.7 0.0 2.7 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_11 PF13086.1 gi|159041543|ref|YP_001540795.1| - 0.007 15.9 0.0 5.2 6.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain Antitoxin-MazE PF04014.13 gi|159041543|ref|YP_001540795.1| - 0.013 15.2 0.3 0.013 15.2 0.2 2.5 3 0 0 3 3 1 0 Antidote-toxin recognition MazE Cytidylate_kin2 PF13189.1 gi|159041543|ref|YP_001540795.1| - 0.014 15.3 0.0 2.3 8.0 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family ResIII PF04851.10 gi|159041543|ref|YP_001540795.1| - 0.015 15.1 0.0 6.7 6.5 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|159041543|ref|YP_001540795.1| - 0.04 13.3 0.8 11 5.3 0.1 3.2 2 2 0 3 3 2 0 AAA-like domain AAA_29 PF13555.1 gi|159041543|ref|YP_001540795.1| - 0.05 13.1 0.0 8.6 5.9 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain IPT PF01745.11 gi|159041543|ref|YP_001540795.1| - 0.072 12.2 0.2 1.9 7.5 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase MobB PF03205.9 gi|159041543|ref|YP_001540795.1| - 0.15 11.7 1.6 7.1 6.3 0.0 3.3 4 0 0 4 4 2 0 Molybdopterin guanine dinucleotide synthesis protein B Cytochrom_B562 PF07361.6 gi|159041543|ref|YP_001540795.1| - 0.4 11.1 4.6 2.3 8.6 0.5 3.2 3 0 0 3 3 3 0 Cytochrome b562 P5CR_dimer PF14748.1 gi|159041544|ref|YP_001540796.1| - 5e-27 94.0 0.0 1e-26 93.0 0.0 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|159041544|ref|YP_001540796.1| - 9.2e-18 64.4 1.3 1.8e-17 63.5 0.9 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|159041544|ref|YP_001540796.1| - 4.1e-08 33.1 4.7 2.7e-07 30.4 2.8 2.4 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|159041544|ref|YP_001540796.1| - 2.3e-05 23.8 0.6 3.8e-05 23.1 0.4 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|159041544|ref|YP_001540796.1| - 3.5e-05 23.7 0.4 6.6e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.4 gi|159041544|ref|YP_001540796.1| - 0.00043 19.9 1.1 0.00082 19.0 0.7 1.5 1 1 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|159041544|ref|YP_001540796.1| - 0.0084 15.2 0.1 0.014 14.5 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|159041544|ref|YP_001540796.1| - 0.023 14.4 0.5 0.049 13.4 0.1 1.7 2 0 0 2 2 2 0 ThiF family PDH PF02153.12 gi|159041544|ref|YP_001540796.1| - 0.034 13.0 0.1 0.045 12.6 0.1 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase IlvN PF07991.7 gi|159041544|ref|YP_001540796.1| - 0.058 12.7 0.2 0.096 12.0 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Methyltransf_31 PF13847.1 gi|159041545|ref|YP_001540797.1| - 5.8e-10 38.9 0.0 6.5e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041545|ref|YP_001540797.1| - 1.4e-09 38.5 0.0 2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|159041545|ref|YP_001540797.1| - 2.4e-08 33.3 0.0 3.9e-08 32.7 0.0 1.4 2 0 0 2 2 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|159041545|ref|YP_001540797.1| - 3.5e-07 30.2 0.0 4.8e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041545|ref|YP_001540797.1| - 1.8e-06 28.2 0.0 2.7e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HTH_24 PF13412.1 gi|159041545|ref|YP_001540797.1| - 2.1e-06 27.0 0.3 2.1e-06 27.0 0.2 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Methyltransf_4 PF02390.12 gi|159041545|ref|YP_001540797.1| - 9.7e-06 24.7 0.0 1.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|159041545|ref|YP_001540797.1| - 6.2e-05 23.4 0.0 0.0001 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159041545|ref|YP_001540797.1| - 7.6e-05 22.1 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|159041545|ref|YP_001540797.1| - 9.6e-05 22.0 0.2 0.0002 20.9 0.0 1.6 2 0 0 2 2 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|159041545|ref|YP_001540797.1| - 0.00014 20.9 0.0 0.00038 19.5 0.0 1.5 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase DOT1 PF08123.8 gi|159041545|ref|YP_001540797.1| - 0.00023 20.5 0.0 0.00078 18.8 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 TrmB PF01978.14 gi|159041545|ref|YP_001540797.1| - 0.00056 19.5 0.7 0.0011 18.6 0.5 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Met_10 PF02475.11 gi|159041545|ref|YP_001540797.1| - 0.00077 19.1 0.1 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.13 gi|159041545|ref|YP_001540797.1| - 0.0011 18.0 0.0 0.0016 17.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|159041545|ref|YP_001540797.1| - 0.0033 17.8 0.0 0.0051 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|159041545|ref|YP_001540797.1| - 0.0038 16.4 0.0 0.0055 15.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Mor PF08765.6 gi|159041545|ref|YP_001540797.1| - 0.006 16.3 0.1 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 Mor transcription activator family Methyltransf_23 PF13489.1 gi|159041545|ref|YP_001540797.1| - 0.006 16.3 0.0 0.013 15.2 0.0 1.6 2 1 0 2 2 1 1 Methyltransferase domain HTH_23 PF13384.1 gi|159041545|ref|YP_001540797.1| - 0.0066 16.0 0.2 0.017 14.7 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|159041545|ref|YP_001540797.1| - 0.0076 15.7 1.0 0.012 15.1 0.1 1.8 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|159041545|ref|YP_001540797.1| - 0.0091 16.0 0.3 0.021 14.9 0.1 1.7 2 0 0 2 2 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|159041545|ref|YP_001540797.1| - 0.014 15.0 0.3 0.052 13.2 0.1 1.9 2 0 0 2 2 2 0 MarR family Cdc6_C PF09079.6 gi|159041545|ref|YP_001540797.1| - 0.015 15.0 0.1 0.039 13.6 0.0 1.7 1 1 0 1 1 1 0 CDC6, C terminal UPF0020 PF01170.13 gi|159041545|ref|YP_001540797.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|159041545|ref|YP_001540797.1| - 0.018 14.4 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF2172 PF09940.4 gi|159041545|ref|YP_001540797.1| - 0.018 13.4 0.0 0.026 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2172) Methyltransf_32 PF13679.1 gi|159041545|ref|YP_001540797.1| - 0.019 14.6 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HTH_36 PF13730.1 gi|159041545|ref|YP_001540797.1| - 0.024 14.7 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PqqD PF05402.7 gi|159041545|ref|YP_001540797.1| - 0.024 14.6 0.1 0.35 10.9 0.0 2.3 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_IclR PF09339.5 gi|159041545|ref|YP_001540797.1| - 0.033 13.7 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|159041545|ref|YP_001540797.1| - 0.041 13.4 0.1 0.079 12.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Methyltransf_24 PF13578.1 gi|159041545|ref|YP_001540797.1| - 0.066 14.0 0.0 0.24 12.2 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Sigma70_r4 PF04545.11 gi|159041545|ref|YP_001540797.1| - 0.067 12.5 0.2 0.16 11.2 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Mga PF08280.6 gi|159041545|ref|YP_001540797.1| - 0.07 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain FaeA PF04703.7 gi|159041545|ref|YP_001540797.1| - 0.073 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Sigma70_r3 PF04539.11 gi|159041545|ref|YP_001540797.1| - 0.089 12.6 0.1 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 RPA_C PF08784.6 gi|159041545|ref|YP_001540797.1| - 0.09 13.2 0.1 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_20 PF12840.2 gi|159041545|ref|YP_001540797.1| - 0.098 12.4 0.1 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|159041545|ref|YP_001540797.1| - 0.099 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|159041545|ref|YP_001540797.1| - 0.1 12.7 0.1 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.7 gi|159041545|ref|YP_001540797.1| - 0.1 12.2 0.4 0.1 12.2 0.3 1.6 2 0 0 2 2 1 0 HTH domain TFIIE_alpha PF02002.12 gi|159041545|ref|YP_001540797.1| - 0.12 11.9 1.0 0.21 11.0 0.2 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit N6_N4_Mtase PF01555.13 gi|159041545|ref|YP_001540797.1| - 0.14 11.6 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA methylase DS PF01916.12 gi|159041546|ref|YP_001540798.1| - 2.2e-70 237.1 0.2 2.6e-70 236.9 0.2 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glycos_transf_4 PF00953.16 gi|159041547|ref|YP_001540799.1| - 2.1e-23 82.8 18.7 2.1e-23 82.8 12.9 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 4 FixQ PF05545.6 gi|159041548|ref|YP_001540800.1| - 0.0057 16.2 0.8 0.0057 16.2 0.5 1.7 2 0 0 2 2 2 1 Cbb3-type cytochrome oxidase component FixQ Caps_synth_CapC PF14102.1 gi|159041548|ref|YP_001540800.1| - 0.024 14.7 3.0 0.026 14.6 2.1 1.2 1 0 0 1 1 1 0 Capsule biosynthesis CapC Polysacc_synt_3 PF13440.1 gi|159041548|ref|YP_001540800.1| - 0.071 12.5 5.1 0.081 12.3 3.5 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF3329 PF11808.3 gi|159041548|ref|YP_001540800.1| - 0.076 13.1 4.1 0.086 12.9 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) O-antigen_lig PF13425.1 gi|159041548|ref|YP_001540800.1| - 0.087 12.8 5.3 0.092 12.7 3.7 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein VPEP PF07589.6 gi|159041548|ref|YP_001540800.1| - 0.12 12.3 4.5 0.79 9.7 0.7 2.3 2 0 0 2 2 2 0 PEP-CTERM motif BPD_transp_2 PF02653.11 gi|159041548|ref|YP_001540800.1| - 0.12 11.3 5.7 0.13 11.1 4.0 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component PRA1 PF03208.14 gi|159041548|ref|YP_001540800.1| - 0.45 9.8 3.6 0.32 10.3 1.5 1.4 1 1 0 1 1 1 0 PRA1 family protein DUF2628 PF10947.3 gi|159041548|ref|YP_001540800.1| - 0.67 9.7 6.1 0.74 9.6 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) OPT PF03169.10 gi|159041548|ref|YP_001540800.1| - 1.3 7.3 7.7 1.4 7.2 5.3 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF4131 PF13567.1 gi|159041548|ref|YP_001540800.1| - 1.5 8.1 5.4 1.8 7.9 3.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TcpE PF12648.2 gi|159041548|ref|YP_001540800.1| - 3.4 7.8 5.7 3.8 7.7 4.0 1.1 1 0 0 1 1 1 0 TcpE family SCIMP PF15050.1 gi|159041548|ref|YP_001540800.1| - 4.1 7.3 5.7 0.42 10.4 0.6 1.7 1 1 1 2 2 2 0 SCIMP protein SdpI PF13630.1 gi|159041548|ref|YP_001540800.1| - 5.3 6.8 8.4 7.1 6.4 5.9 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4191 PF13829.1 gi|159041548|ref|YP_001540800.1| - 5.3 6.0 6.1 5.7 5.9 4.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF2970 PF11174.3 gi|159041548|ref|YP_001540800.1| - 7.7 6.1 9.4 2.3 7.8 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2970) Aldedh PF00171.17 gi|159041549|ref|YP_001540801.1| - 3.6e-114 381.6 0.0 4.1e-114 381.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|159041549|ref|YP_001540801.1| - 4.9e-06 25.5 0.0 1.1e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) SRP19 PF01922.12 gi|159041549|ref|YP_001540801.1| - 0.11 13.0 0.0 0.34 11.5 0.0 1.8 1 0 0 1 1 1 0 SRP19 protein KH_1 PF00013.24 gi|159041550|ref|YP_001540802.1| - 5.2e-05 22.8 3.5 5.2e-05 22.8 2.4 2.4 2 0 0 2 2 2 1 KH domain HTH_23 PF13384.1 gi|159041550|ref|YP_001540802.1| - 0.0012 18.4 1.2 0.018 14.7 0.3 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|159041550|ref|YP_001540802.1| - 0.026 14.5 0.4 0.056 13.4 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain BON PF04972.12 gi|159041550|ref|YP_001540802.1| - 0.04 13.6 5.2 2.5 7.9 0.2 2.5 2 0 0 2 2 2 0 BON domain KH_3 PF13014.1 gi|159041550|ref|YP_001540802.1| - 0.048 13.3 0.4 0.15 11.7 0.3 1.8 1 0 0 1 1 1 0 KH domain KH_2 PF07650.12 gi|159041550|ref|YP_001540802.1| - 1.5 8.4 7.5 0.22 11.1 0.8 2.3 2 0 0 2 2 2 0 KH domain Meth_synt_2 PF01717.13 gi|159041551|ref|YP_001540803.1| - 3.6e-41 141.2 0.0 3.8e-25 88.5 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|159041551|ref|YP_001540803.1| - 8.8e-13 48.1 0.0 0.00012 21.4 0.0 3.1 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain TGS PF02824.16 gi|159041552|ref|YP_001540804.1| - 9.7e-18 63.7 0.0 2.1e-17 62.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|159041552|ref|YP_001540804.1| - 1.8e-05 24.6 0.0 5e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase YchF-GTPase_C PF06071.8 gi|159041552|ref|YP_001540804.1| - 0.021 14.6 0.0 5 6.9 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF933) FeoB_N PF02421.13 gi|159041552|ref|YP_001540804.1| - 0.054 12.7 0.0 0.095 11.9 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B Miro PF08477.8 gi|159041552|ref|YP_001540804.1| - 0.09 13.2 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF3954 PF13128.1 gi|159041552|ref|YP_001540804.1| - 0.26 10.7 2.8 2.9 7.3 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3954) Abhydrolase_3 PF07859.8 gi|159041553|ref|YP_001540805.1| - 4.8e-74 248.4 0.0 6e-74 248.1 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|159041553|ref|YP_001540805.1| - 2.4e-13 49.6 0.5 5.1e-13 48.5 0.4 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|159041553|ref|YP_001540805.1| - 1.9e-10 40.6 0.0 3.1e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Chlorophyllase2 PF12740.2 gi|159041553|ref|YP_001540805.1| - 2.4e-07 29.9 0.0 3.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.16 gi|159041553|ref|YP_001540805.1| - 2.7e-05 23.5 0.0 9.3e-05 21.7 0.0 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family DUF2424 PF10340.4 gi|159041553|ref|YP_001540805.1| - 4.1e-05 22.4 0.0 5.5e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) AXE1 PF05448.7 gi|159041553|ref|YP_001540805.1| - 0.0021 16.6 0.1 0.16 10.4 0.1 2.1 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Chlorophyllase PF07224.6 gi|159041553|ref|YP_001540805.1| - 0.0062 15.3 0.0 0.0089 14.8 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase DUF2974 PF11187.3 gi|159041553|ref|YP_001540805.1| - 0.011 15.0 0.0 0.019 14.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2974) DLH PF01738.13 gi|159041553|ref|YP_001540805.1| - 0.043 13.0 0.0 0.63 9.2 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family Lipase_3 PF01764.20 gi|159041553|ref|YP_001540805.1| - 0.062 12.9 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Thioesterase PF00975.15 gi|159041553|ref|YP_001540805.1| - 0.072 13.3 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain TPP_enzyme_M PF00205.17 gi|159041554|ref|YP_001540806.1| - 3.1e-35 120.9 0.3 4.2e-34 117.2 0.0 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|159041554|ref|YP_001540806.1| - 1.4e-32 112.4 0.0 1.2e-31 109.3 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|159041554|ref|YP_001540806.1| - 3.8e-26 91.6 0.0 9.2e-26 90.3 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|159041554|ref|YP_001540806.1| - 0.12 11.3 0.1 0.38 9.6 0.0 1.8 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Flavin_Reduct PF01613.13 gi|159041555|ref|YP_001540807.1| - 1.3e-27 96.5 0.0 1.8e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain Radical_SAM PF04055.16 gi|159041556|ref|YP_001540808.1| - 5.7e-13 49.3 0.0 9.3e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|159041556|ref|YP_001540808.1| - 7e-10 39.1 0.0 1.2e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159041556|ref|YP_001540808.1| - 5.7e-07 29.5 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ion_trans_2 PF07885.11 gi|159041558|ref|YP_001540810.1| - 6.5e-18 64.2 6.1 1.6e-17 62.9 4.2 1.7 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.13 gi|159041558|ref|YP_001540810.1| - 1.2e-10 41.4 0.3 2.8e-10 40.2 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|159041558|ref|YP_001540810.1| - 3.2e-07 29.8 0.4 1.3e-06 27.8 0.2 2.1 2 0 0 2 2 2 1 TrkA-C domain Ion_trans PF00520.26 gi|159041558|ref|YP_001540810.1| - 6.4e-07 28.8 4.2 1.3e-06 27.8 2.9 1.4 1 0 0 1 1 1 1 Ion transport protein Lig_chan PF00060.21 gi|159041558|ref|YP_001540810.1| - 1.7e-05 24.5 0.1 2.2e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 Ligand-gated ion channel DctQ PF04290.7 gi|159041558|ref|YP_001540810.1| - 0.057 13.1 3.0 0.11 12.2 2.1 1.4 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Prok-E2_C PF14459.1 gi|159041558|ref|YP_001540810.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Prokaryotic E2 family C PALP PF00291.20 gi|159041559|ref|YP_001540811.1| - 1.1e-32 113.5 0.0 1.4e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF521 PF04412.8 gi|159041560|ref|YP_001540812.1| - 6e-91 304.9 0.0 6.8e-91 304.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Lar_restr_allev PF14354.1 gi|159041561|ref|YP_001540813.1| - 0.0015 18.7 0.1 0.0022 18.2 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|159041561|ref|YP_001540813.1| - 0.0035 16.8 0.2 0.0053 16.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|159041561|ref|YP_001540813.1| - 0.011 15.6 0.2 0.021 14.7 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF2072 PF09845.4 gi|159041561|ref|YP_001540813.1| - 0.011 15.6 0.5 0.018 14.9 0.3 1.4 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Prok-RING_1 PF14446.1 gi|159041561|ref|YP_001540813.1| - 0.029 14.0 0.1 0.043 13.5 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|159041561|ref|YP_001540813.1| - 0.041 13.0 0.5 0.073 12.2 0.3 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|159041561|ref|YP_001540813.1| - 0.058 12.6 1.1 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|159041561|ref|YP_001540813.1| - 0.13 11.8 2.2 0.24 10.9 1.5 1.5 1 1 0 1 1 1 0 CSL zinc finger TF_Zn_Ribbon PF08271.7 gi|159041561|ref|YP_001540813.1| - 0.25 10.6 3.7 0.81 9.0 2.6 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|159041561|ref|YP_001540813.1| - 0.96 9.0 4.6 4.6 6.8 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|159041561|ref|YP_001540813.1| - 1.5 8.2 4.4 0.89 8.9 1.2 2.0 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain SWIM PF04434.12 gi|159041562|ref|YP_001540814.1| - 0.0072 15.7 0.1 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 SWIM zinc finger Methyltransf_11 PF08241.7 gi|159041563|ref|YP_001540815.1| - 1.8e-16 60.3 0.0 2.6e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159041563|ref|YP_001540815.1| - 4.4e-10 39.9 0.1 6.7e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041563|ref|YP_001540815.1| - 5.9e-10 39.4 0.0 9.9e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041563|ref|YP_001540815.1| - 7.6e-09 35.3 0.0 1e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159041563|ref|YP_001540815.1| - 2.9e-07 29.8 0.0 3.8e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|159041563|ref|YP_001540815.1| - 8.3e-06 25.6 0.0 1.1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|159041563|ref|YP_001540815.1| - 8.7e-06 25.5 0.1 2.1e-05 24.2 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|159041563|ref|YP_001540815.1| - 3.7e-05 24.2 0.0 5.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159041563|ref|YP_001540815.1| - 8.7e-05 22.5 0.1 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|159041563|ref|YP_001540815.1| - 0.0058 15.7 0.0 0.0078 15.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|159041563|ref|YP_001540815.1| - 0.012 14.6 0.0 0.016 14.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) AAA_22 PF13401.1 gi|159041564|ref|YP_001540816.1| - 0.0041 17.2 0.1 0.36 10.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|159041564|ref|YP_001540816.1| - 0.007 15.8 0.1 0.018 14.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|159041564|ref|YP_001540816.1| - 0.0093 15.9 0.4 0.039 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.22 gi|159041564|ref|YP_001540816.1| - 0.01 16.1 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.1 gi|159041564|ref|YP_001540816.1| - 0.011 16.0 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|159041564|ref|YP_001540816.1| - 0.011 15.4 0.0 0.034 13.8 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_21 PF13304.1 gi|159041564|ref|YP_001540816.1| - 0.015 15.3 0.1 0.018 15.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|159041564|ref|YP_001540816.1| - 0.024 13.8 0.0 0.046 12.9 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|159041564|ref|YP_001540816.1| - 0.035 13.6 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|159041564|ref|YP_001540816.1| - 0.036 14.8 0.1 0.096 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|159041564|ref|YP_001540816.1| - 0.037 13.5 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.14 gi|159041564|ref|YP_001540816.1| - 0.039 13.3 0.0 0.086 12.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|159041564|ref|YP_001540816.1| - 0.041 13.3 0.0 0.093 12.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|159041564|ref|YP_001540816.1| - 0.052 13.2 0.1 5.7 6.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|159041564|ref|YP_001540816.1| - 0.093 12.6 0.6 0.28 11.1 0.4 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|159041564|ref|YP_001540816.1| - 0.11 11.4 0.1 0.17 10.9 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain MFS_1 PF07690.11 gi|159041565|ref|YP_001540817.1| - 7.6e-31 107.0 42.6 1.7e-30 105.9 29.5 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|159041565|ref|YP_001540817.1| - 7.3e-07 28.8 0.7 7.3e-07 28.8 0.5 3.3 4 0 0 4 4 4 1 MFS_1 like family MFS_3 PF05977.8 gi|159041565|ref|YP_001540817.1| - 6e-05 21.3 8.8 6e-05 21.3 6.1 1.8 2 0 0 2 2 2 1 Transmembrane secretion effector AP_endonuc_2 PF01261.19 gi|159041566|ref|YP_001540818.1| - 1.3e-21 76.8 0.0 1.7e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|159041566|ref|YP_001540818.1| - 7.4e-05 21.8 0.0 0.00013 21.0 0.0 1.4 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF4121 PF13497.1 gi|159041566|ref|YP_001540818.1| - 0.0049 15.9 0.2 0.0071 15.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4121) Macro_2 PF14519.1 gi|159041566|ref|YP_001540818.1| - 0.072 12.2 0.0 0.18 10.8 0.0 1.7 1 1 0 1 1 1 0 Macro-like domain tRNA_NucTransf2 PF09249.6 gi|159041567|ref|YP_001540819.1| - 1.2e-42 144.4 0.0 3.1e-42 143.0 0.0 1.7 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|159041567|ref|YP_001540819.1| - 2e-09 37.6 0.0 7.3e-09 35.8 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain NTP_transferase PF00483.18 gi|159041568|ref|YP_001540820.1| - 4.2e-32 111.4 0.0 5.1e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|159041568|ref|YP_001540820.1| - 3.3e-14 53.2 0.0 4.8e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|159041568|ref|YP_001540820.1| - 5e-06 26.1 0.0 2.3e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.1 gi|159041568|ref|YP_001540820.1| - 0.031 13.8 0.0 0.075 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) zf-C4_Topoisom PF01396.14 gi|159041569|ref|YP_001540821.1| - 0.023 14.1 0.9 0.092 12.2 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|159041569|ref|YP_001540821.1| - 0.08 12.9 0.2 0.08 12.9 0.1 1.8 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|159041569|ref|YP_001540821.1| - 4.3 7.2 7.8 48 3.8 5.4 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon AA_kinase PF00696.23 gi|159041570|ref|YP_001540822.1| - 5.4e-28 98.1 0.0 6.3e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Glyco_hydro_76 PF03663.9 gi|159041571|ref|YP_001540823.1| - 1.2e-49 169.6 2.9 1.2e-49 169.6 2.0 1.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 76 DUF1680 PF07944.7 gi|159041571|ref|YP_001540823.1| - 6.2e-05 21.4 0.3 0.17 10.1 0.1 2.8 2 1 0 2 2 2 2 Putative glycosyl hydrolase of unknown function (DUF1680) GlcNAc_2-epim PF07221.6 gi|159041571|ref|YP_001540823.1| - 0.00017 20.7 0.1 0.0074 15.3 0.0 2.7 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) LANC_like PF05147.8 gi|159041571|ref|YP_001540823.1| - 0.0035 15.9 0.1 0.99 7.8 0.0 2.4 2 0 0 2 2 2 2 Lanthionine synthetase C-like protein Glyco_hydro_47 PF01532.15 gi|159041571|ref|YP_001540823.1| - 0.017 13.7 0.1 0.044 12.4 0.0 1.6 1 1 0 1 1 1 0 Glycosyl hydrolase family 47 C5-epim_C PF06662.8 gi|159041571|ref|YP_001540823.1| - 0.13 11.4 9.0 5 6.3 0.4 4.1 4 1 1 5 5 5 0 D-glucuronyl C5-epimerase C-terminus Rifin_STEVOR PF02009.11 gi|159041571|ref|YP_001540823.1| - 0.7 9.4 4.3 1.2 8.6 3.0 1.4 1 0 0 1 1 1 0 Rifin/stevor family UPF0004 PF00919.15 gi|159041572|ref|YP_001540824.1| - 7.4e-22 77.0 0.0 1.4e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|159041572|ref|YP_001540824.1| - 5.1e-21 75.5 0.0 1e-20 74.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.15 gi|159041572|ref|YP_001540824.1| - 0.00037 20.2 0.0 0.00061 19.5 0.0 1.4 1 0 0 1 1 1 1 TRAM domain ACT PF01842.20 gi|159041573|ref|YP_001540825.1| - 1.6e-08 33.8 0.0 6.6e-08 31.8 0.0 1.9 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|159041573|ref|YP_001540825.1| - 0.013 15.1 0.0 0.029 14.0 0.0 1.5 2 0 0 2 2 2 0 ACT domain MoeZ_MoeB PF05237.8 gi|159041573|ref|YP_001540825.1| - 0.059 12.9 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 MoeZ/MoeB domain CBP PF12192.3 gi|159041573|ref|YP_001540825.1| - 0.19 11.7 0.8 0.34 10.8 0.5 1.4 1 0 0 1 1 1 0 Fungal calcium binding protein TPR_14 PF13428.1 gi|159041573|ref|YP_001540825.1| - 0.21 12.3 2.3 4.5 8.1 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Cupin_2 PF07883.6 gi|159041574|ref|YP_001540826.1| - 1.7e-14 53.0 0.1 2.6e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|159041574|ref|YP_001540826.1| - 3.1e-08 33.4 0.0 4e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.9 gi|159041574|ref|YP_001540826.1| - 0.0007 19.5 0.0 0.00076 19.4 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family EutQ PF06249.7 gi|159041574|ref|YP_001540826.1| - 0.0049 16.4 0.0 0.0051 16.3 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ KduI PF04962.7 gi|159041574|ref|YP_001540826.1| - 0.0065 15.5 0.0 0.008 15.2 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family CENP-C_C PF11699.3 gi|159041574|ref|YP_001540826.1| - 0.0066 16.4 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|159041574|ref|YP_001540826.1| - 0.0084 15.7 0.1 0.0094 15.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|159041574|ref|YP_001540826.1| - 0.023 14.3 0.0 0.026 14.1 0.0 1.1 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|159041574|ref|YP_001540826.1| - 0.061 12.7 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF861) 2OG-FeII_Oxy_5 PF13759.1 gi|159041574|ref|YP_001540826.1| - 0.12 12.6 0.1 14 6.0 0.0 2.2 1 1 1 2 2 2 0 Putative 2OG-Fe(II) oxygenase Cupin_7 PF12973.2 gi|159041574|ref|YP_001540826.1| - 0.14 12.0 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain zf-ribbon_3 PF13248.1 gi|159041575|ref|YP_001540827.1| - 0.0028 16.7 2.8 0.33 10.2 0.6 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|159041575|ref|YP_001540827.1| - 0.0032 17.1 4.6 0.038 13.6 3.2 2.1 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|159041575|ref|YP_001540827.1| - 0.015 14.7 3.8 0.094 12.2 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|159041575|ref|YP_001540827.1| - 0.018 15.3 1.2 0.56 10.6 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|159041575|ref|YP_001540827.1| - 0.019 15.2 1.3 0.096 13.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-CHCC PF10276.4 gi|159041575|ref|YP_001540827.1| - 0.026 14.3 0.2 0.047 13.5 0.1 1.5 1 0 0 1 1 1 0 Zinc-finger domain zf-C2H2 PF00096.21 gi|159041575|ref|YP_001540827.1| - 0.04 14.2 2.3 0.47 10.8 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF951 PF06107.6 gi|159041575|ref|YP_001540827.1| - 0.065 12.7 0.5 0.2 11.1 0.4 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DZR PF12773.2 gi|159041575|ref|YP_001540827.1| - 0.078 12.8 0.3 0.19 11.5 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|159041575|ref|YP_001540827.1| - 0.081 12.5 0.5 4.3 6.9 0.0 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041575|ref|YP_001540827.1| - 0.087 12.5 0.6 4.6 7.0 0.0 2.5 3 0 0 3 3 3 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|159041575|ref|YP_001540827.1| - 0.099 12.1 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|159041575|ref|YP_001540827.1| - 0.12 12.3 0.3 2.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|159041575|ref|YP_001540827.1| - 0.13 11.5 0.8 3.6 6.9 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|159041575|ref|YP_001540827.1| - 0.15 11.7 0.8 0.54 10.0 0.0 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF35_N PF12172.3 gi|159041575|ref|YP_001540827.1| - 0.44 10.5 2.2 17 5.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1884 PF08967.5 gi|159041576|ref|YP_001540828.1| - 0.096 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) UPF0179 PF03684.8 gi|159041577|ref|YP_001540829.1| - 6.1e-23 80.9 0.0 7.9e-23 80.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Robl_LC7 PF03259.12 gi|159041578|ref|YP_001540830.1| - 2.2e-05 23.9 0.0 3.8e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|159041578|ref|YP_001540830.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting DUF162 PF02589.10 gi|159041579|ref|YP_001540831.1| - 9.8e-53 178.4 0.2 1.4e-52 178.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|159041579|ref|YP_001540831.1| - 5.5e-10 39.1 2.6 9.8e-10 38.3 1.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041579|ref|YP_001540831.1| - 1.4e-06 28.5 2.9 6.3e-06 26.4 2.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159041579|ref|YP_001540831.1| - 3.7e-06 27.2 2.5 0.07 13.5 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041579|ref|YP_001540831.1| - 1.5e-05 25.1 1.1 0.069 13.4 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159041579|ref|YP_001540831.1| - 1.8e-05 25.0 3.7 3.3e-05 24.1 2.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159041579|ref|YP_001540831.1| - 2.9e-05 23.7 4.7 0.00034 20.3 3.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|159041579|ref|YP_001540831.1| - 0.00015 21.3 0.6 0.0081 15.7 0.1 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|159041579|ref|YP_001540831.1| - 0.00027 20.3 6.3 0.0028 17.1 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041579|ref|YP_001540831.1| - 0.0014 18.4 7.8 0.002 17.9 0.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|159041579|ref|YP_001540831.1| - 0.0021 17.8 6.3 0.26 11.2 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159041579|ref|YP_001540831.1| - 0.0065 16.3 2.6 0.062 13.1 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041579|ref|YP_001540831.1| - 0.063 14.0 4.9 0.28 11.9 3.4 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain VASP_tetra PF08776.6 gi|159041579|ref|YP_001540831.1| - 0.15 11.3 0.5 0.33 10.3 0.3 1.5 1 0 0 1 1 1 0 VASP tetramerisation domain Fer4_4 PF12800.2 gi|159041579|ref|YP_001540831.1| - 0.18 12.2 7.4 0.52 10.7 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|159041579|ref|YP_001540831.1| - 0.19 12.3 11.6 2 9.2 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Trehalase PF01204.13 gi|159041580|ref|YP_001540832.1| - 5.8e-24 84.6 0.3 7.6e-21 74.3 0.1 2.1 1 1 1 2 2 2 2 Trehalase Glyco_hydro_63 PF03200.11 gi|159041580|ref|YP_001540832.1| - 5.7e-20 70.8 10.2 8.9e-10 37.0 3.0 3.1 1 1 1 2 2 2 2 Mannosyl oligosaccharide glucosidase GDE_C PF06202.9 gi|159041580|ref|YP_001540832.1| - 0.0036 16.0 0.0 0.0056 15.4 0.0 1.3 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid PF05592.6 gi|159041580|ref|YP_001540832.1| - 0.03 12.5 0.7 0.062 11.5 0.5 1.5 1 1 0 1 1 1 0 Bacterial alpha-L-rhamnosidase hSH3 PF14603.1 gi|159041581|ref|YP_001540833.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Helically-extended SH3 domain zf-TFIIB PF13453.1 gi|159041582|ref|YP_001540834.1| - 0.00096 18.2 1.0 0.0014 17.7 0.7 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger Elf1 PF05129.8 gi|159041582|ref|YP_001540834.1| - 0.0022 17.6 0.1 0.0029 17.2 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-C4_Topoisom PF01396.14 gi|159041582|ref|YP_001540834.1| - 0.0025 17.3 1.3 0.06 12.8 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|159041582|ref|YP_001540834.1| - 0.01 15.5 0.2 0.015 15.0 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Rep_fac-A_C PF08646.5 gi|159041582|ref|YP_001540834.1| - 0.016 14.9 0.5 0.018 14.7 0.3 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain DZR PF12773.2 gi|159041582|ref|YP_001540834.1| - 0.018 14.8 0.1 0.028 14.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|159041582|ref|YP_001540834.1| - 0.02 15.1 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar NOB1_Zn_bind PF08772.6 gi|159041582|ref|YP_001540834.1| - 0.022 14.5 0.8 0.052 13.3 0.5 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-CHY PF05495.7 gi|159041582|ref|YP_001540834.1| - 0.042 14.0 0.3 0.053 13.6 0.2 1.1 1 0 0 1 1 1 0 CHY zinc finger Zn_Tnp_IS1595 PF12760.2 gi|159041582|ref|YP_001540834.1| - 0.042 13.6 0.7 0.064 13.0 0.5 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain ZZ PF00569.12 gi|159041582|ref|YP_001540834.1| - 0.067 12.7 0.9 0.16 11.5 0.1 1.8 2 0 0 2 2 2 0 Zinc finger, ZZ type Cys_rich_KTR PF14205.1 gi|159041582|ref|YP_001540834.1| - 0.089 12.2 5.0 0.37 10.2 3.4 1.9 1 1 0 1 1 1 0 Cysteine-rich KTR HypA PF01155.14 gi|159041582|ref|YP_001540834.1| - 0.1 12.2 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF329 PF03884.9 gi|159041582|ref|YP_001540834.1| - 0.11 12.0 0.3 0.23 11.0 0.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-CSL PF05207.8 gi|159041582|ref|YP_001540834.1| - 0.11 12.0 0.9 0.23 10.9 0.6 1.6 1 1 0 1 1 1 0 CSL zinc finger Zn_ribbon_recom PF13408.1 gi|159041582|ref|YP_001540834.1| - 0.11 12.7 2.6 0.23 11.7 1.8 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|159041582|ref|YP_001540834.1| - 0.17 11.2 1.4 0.25 10.6 0.9 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|159041582|ref|YP_001540834.1| - 0.49 9.9 2.9 2.7 7.5 2.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain PHD_2 PF13831.1 gi|159041582|ref|YP_001540834.1| - 0.56 9.5 3.0 0.46 9.8 0.3 1.9 2 0 0 2 2 2 0 PHD-finger CitMHS PF03600.11 gi|159041583|ref|YP_001540835.1| - 1e-28 99.9 35.0 4.2e-26 91.3 21.2 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|159041583|ref|YP_001540835.1| - 3.3e-12 46.0 30.2 4e-12 45.8 21.0 1.1 1 0 0 1 1 1 1 Arsenical pump membrane protein Na_sulph_symp PF00939.14 gi|159041583|ref|YP_001540835.1| - 3.9e-09 35.9 30.8 6.4e-06 25.2 5.6 2.2 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region CoA_binding PF02629.14 gi|159041584|ref|YP_001540836.1| - 0.0003 21.2 0.2 0.00075 19.9 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|159041584|ref|YP_001540836.1| - 0.018 15.5 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.19 gi|159041584|ref|YP_001540836.1| - 0.12 12.3 0.7 0.78 9.6 0.2 2.2 1 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GATase_6 PF13522.1 gi|159041585|ref|YP_001540837.1| - 1e-11 44.8 0.0 1.7e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|159041585|ref|YP_001540837.1| - 0.00071 18.3 0.0 0.00084 18.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II ACT_4 PF13291.1 gi|159041585|ref|YP_001540837.1| - 0.083 13.2 0.1 3.9 7.8 0.0 2.4 2 0 0 2 2 2 0 ACT domain tRNA-synt_1d PF00750.14 gi|159041586|ref|YP_001540838.1| - 4.2e-41 140.9 0.8 3.1e-23 82.1 0.1 2.2 1 1 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|159041586|ref|YP_001540838.1| - 1.8e-26 92.3 0.2 1.3e-25 89.6 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain CobN-Mg_chel PF02514.11 gi|159041586|ref|YP_001540838.1| - 0.00034 18.1 0.2 0.13 9.6 0.0 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase tRNA-synt_1f PF01921.13 gi|159041586|ref|YP_001540838.1| - 0.00042 19.1 0.1 5.4 5.5 0.0 4.0 3 1 1 4 4 4 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|159041586|ref|YP_001540838.1| - 0.00096 17.9 0.2 0.086 11.4 0.0 3.3 3 1 1 4 4 4 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|159041586|ref|YP_001540838.1| - 0.0067 14.4 0.2 0.016 13.2 0.1 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|159041586|ref|YP_001540838.1| - 0.096 11.7 0.0 0.24 10.4 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain KaiC PF06745.8 gi|159041587|ref|YP_001540839.1| - 0.014 14.5 0.1 0.015 14.4 0.1 1.1 1 0 0 1 1 1 0 KaiC DUF2370 PF10176.4 gi|159041587|ref|YP_001540839.1| - 0.076 12.3 0.6 0.11 11.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) MMgT PF10270.4 gi|159041587|ref|YP_001540839.1| - 0.083 13.3 0.2 0.12 12.8 0.2 1.2 1 0 0 1 1 1 0 Membrane magnesium transporter SIMPL PF04402.9 gi|159041588|ref|YP_001540840.1| - 9.3e-24 84.4 0.4 1.1e-23 84.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Mut7-C PF01927.11 gi|159041589|ref|YP_001540841.1| - 3.4e-24 85.4 0.0 5.1e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain Lar_restr_allev PF14354.1 gi|159041589|ref|YP_001540841.1| - 0.008 16.4 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-FPG_IleRS PF06827.9 gi|159041589|ref|YP_001540841.1| - 0.073 12.7 0.3 8.3 6.1 0.0 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C4_Topoisom PF01396.14 gi|159041589|ref|YP_001540841.1| - 0.13 11.7 2.0 0.73 9.3 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_recom PF13408.1 gi|159041589|ref|YP_001540841.1| - 1.5 9.1 5.5 9.8 6.5 2.5 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Resolvase PF00239.16 gi|159041590|ref|YP_001540842.1| - 1.1e-33 116.1 0.3 1.7e-33 115.4 0.2 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain ESX-1_EspG PF14011.1 gi|159041590|ref|YP_001540842.1| - 0.00035 19.9 0.1 0.0005 19.4 0.1 1.2 1 0 0 1 1 1 1 EspG family OrfB_Zn_ribbon PF07282.6 gi|159041590|ref|YP_001540842.1| - 0.00089 18.8 0.5 0.0026 17.3 0.1 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|159041590|ref|YP_001540842.1| - 0.0022 17.2 0.4 0.0042 16.3 0.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|159041590|ref|YP_001540842.1| - 0.0047 16.5 1.3 0.0077 15.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|159041590|ref|YP_001540842.1| - 0.015 15.2 0.0 0.1 12.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1610 PF07754.6 gi|159041590|ref|YP_001540842.1| - 0.017 15.2 0.7 0.017 15.2 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DZR PF12773.2 gi|159041590|ref|YP_001540842.1| - 0.068 13.0 0.4 0.1 12.4 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_photolyase PF00875.13 gi|159041590|ref|YP_001540842.1| - 0.074 12.7 0.1 0.23 11.1 0.1 1.7 1 1 0 1 1 1 0 DNA photolyase HTH_9 PF08221.6 gi|159041590|ref|YP_001540842.1| - 0.091 12.6 0.1 0.25 11.2 0.0 1.8 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phage_antitermQ PF06530.7 gi|159041590|ref|YP_001540842.1| - 0.098 12.2 0.1 0.26 10.8 0.0 1.7 2 0 0 2 2 2 0 Phage antitermination protein Q zinc-ribbons_6 PF07191.7 gi|159041590|ref|YP_001540842.1| - 0.23 11.2 0.7 0.42 10.4 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-FPG_IleRS PF06827.9 gi|159041590|ref|YP_001540842.1| - 1.2 8.8 6.0 7.9 6.2 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|159041590|ref|YP_001540842.1| - 1.7 7.9 7.1 0.19 10.9 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|159041590|ref|YP_001540842.1| - 9.2 6.0 6.9 47 3.8 4.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Tuberin PF03542.11 gi|159041591|ref|YP_001540843.1| - 0.04 12.9 0.0 0.046 12.7 0.0 1.0 1 0 0 1 1 1 0 Tuberin MgtE_N PF03448.12 gi|159041591|ref|YP_001540843.1| - 0.13 12.5 0.4 1 9.6 0.3 2.1 1 1 0 1 1 1 0 MgtE intracellular N domain Isochorismatase PF00857.15 gi|159041592|ref|YP_001540844.1| - 3.9e-37 127.8 0.0 4.5e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF2299 PF10061.4 gi|159041592|ref|YP_001540844.1| - 0.095 12.1 0.0 0.22 10.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) Tropomyosin_1 PF12718.2 gi|159041593|ref|YP_001540845.1| - 0.0015 18.4 0.1 0.0022 17.8 0.1 1.2 1 0 0 1 1 1 1 Tropomyosin like Prefoldin_2 PF01920.15 gi|159041593|ref|YP_001540845.1| - 0.0034 17.1 0.9 0.0088 15.7 0.2 1.8 2 0 0 2 2 2 1 Prefoldin subunit bZIP_1 PF00170.16 gi|159041593|ref|YP_001540845.1| - 0.0036 17.2 0.2 0.006 16.5 0.2 1.3 1 0 0 1 1 1 1 bZIP transcription factor Tropomyosin PF00261.15 gi|159041593|ref|YP_001540845.1| - 0.0062 15.6 0.2 0.0084 15.2 0.2 1.2 1 0 0 1 1 1 1 Tropomyosin GrpE PF01025.14 gi|159041593|ref|YP_001540845.1| - 0.01 15.4 0.2 0.017 14.6 0.2 1.3 1 0 0 1 1 1 0 GrpE BLOC1_2 PF10046.4 gi|159041593|ref|YP_001540845.1| - 0.014 15.5 0.4 0.025 14.6 0.3 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.14 gi|159041593|ref|YP_001540845.1| - 0.019 12.8 0.1 0.023 12.6 0.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Jnk-SapK_ap_N PF09744.4 gi|159041593|ref|YP_001540845.1| - 0.023 14.6 0.3 0.04 13.8 0.2 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Vps53_N PF04100.7 gi|159041593|ref|YP_001540845.1| - 0.028 13.2 0.1 0.037 12.8 0.0 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal Prefoldin PF02996.12 gi|159041593|ref|YP_001540845.1| - 0.031 13.9 0.5 0.063 12.9 0.3 1.5 1 0 0 1 1 1 0 Prefoldin subunit DUF1515 PF07439.6 gi|159041593|ref|YP_001540845.1| - 0.045 13.5 0.3 0.068 12.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF4407 PF14362.1 gi|159041593|ref|YP_001540845.1| - 0.049 12.5 0.0 0.059 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DivIC PF04977.10 gi|159041593|ref|YP_001540845.1| - 0.078 12.4 0.5 0.14 11.7 0.3 1.4 1 0 0 1 1 1 0 Septum formation initiator P4Ha_N PF08336.6 gi|159041593|ref|YP_001540845.1| - 0.092 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region IncA PF04156.9 gi|159041593|ref|YP_001540845.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 IncA protein Spc24 PF08286.6 gi|159041593|ref|YP_001540845.1| - 0.11 12.1 0.8 0.19 11.4 0.5 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Med4 PF10018.4 gi|159041593|ref|YP_001540845.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 SlyX PF04102.7 gi|159041593|ref|YP_001540845.1| - 0.12 12.7 0.5 0.2 12.0 0.4 1.4 1 0 0 1 1 1 0 SlyX FlaC_arch PF05377.6 gi|159041593|ref|YP_001540845.1| - 0.16 11.9 0.9 0.42 10.5 0.2 1.8 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Raffinose_syn PF05691.7 gi|159041594|ref|YP_001540846.1| - 4.6e-43 146.8 0.7 1.2e-24 85.8 0.0 3.4 1 1 1 2 2 2 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|159041594|ref|YP_001540846.1| - 2.3e-06 26.5 0.1 3.6e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 Melibiase Glyco_hydro_31 PF01055.21 gi|159041594|ref|YP_001540846.1| - 0.00011 21.1 0.1 0.00016 20.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 ABC_tran PF00005.22 gi|159041596|ref|YP_001540848.1| - 7e-31 107.3 0.0 1e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041596|ref|YP_001540848.1| - 3.6e-07 30.4 0.0 8.3e-05 22.6 0.0 2.6 2 1 0 3 3 3 1 AAA domain TOBE_2 PF08402.5 gi|159041596|ref|YP_001540848.1| - 4.5e-07 29.7 0.0 1.5e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.1 gi|159041596|ref|YP_001540848.1| - 9.3e-05 22.4 0.0 0.00022 21.2 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|159041596|ref|YP_001540848.1| - 0.00017 20.7 0.0 0.0012 17.9 0.0 2.1 3 0 0 3 3 3 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|159041596|ref|YP_001540848.1| - 0.0011 17.6 0.0 1.5 7.3 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|159041596|ref|YP_001540848.1| - 0.011 15.8 0.2 0.047 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|159041596|ref|YP_001540848.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|159041596|ref|YP_001540848.1| - 0.023 14.5 0.1 0.13 12.1 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|159041596|ref|YP_001540848.1| - 0.029 13.7 0.2 1.3 8.3 0.0 2.2 1 1 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|159041596|ref|YP_001540848.1| - 0.038 13.5 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|159041596|ref|YP_001540848.1| - 0.04 13.1 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Kri1 PF05178.7 gi|159041596|ref|YP_001540848.1| - 0.065 13.5 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 KRI1-like family AAA_25 PF13481.1 gi|159041596|ref|YP_001540848.1| - 0.072 12.4 0.1 0.98 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|159041596|ref|YP_001540848.1| - 0.082 12.6 0.2 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|159041596|ref|YP_001540848.1| - 0.11 12.6 0.1 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|159041596|ref|YP_001540848.1| - 0.13 11.8 0.1 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain SBP_bac_1 PF01547.20 gi|159041597|ref|YP_001540849.1| - 7.2e-08 32.5 6.6 7.2e-08 32.5 4.6 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein DUF2749 PF10907.3 gi|159041597|ref|YP_001540849.1| - 1.2 9.0 3.1 2.2 8.2 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) BPD_transp_1 PF00528.17 gi|159041598|ref|YP_001540850.1| - 7.6e-12 45.1 29.6 7.6e-12 45.1 20.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peptidase_M50 PF02163.17 gi|159041598|ref|YP_001540850.1| - 9.2 5.1 8.2 34 3.3 4.8 2.4 1 1 0 1 1 1 0 Peptidase family M50 BPD_transp_1 PF00528.17 gi|159041599|ref|YP_001540851.1| - 3.8e-20 72.1 23.7 3.8e-20 72.1 16.4 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component UCR_Fe-S_N PF10399.4 gi|159041600|ref|YP_001540852.1| - 0.77 8.9 4.8 1.2 8.4 3.3 1.2 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Form-deh_trans PF09163.6 gi|159041600|ref|YP_001540852.1| - 1.3 8.5 3.7 1.9 8.0 2.6 1.2 1 0 0 1 1 1 0 Formate dehydrogenase N, transmembrane Aldolase_2 PF10120.4 gi|159041601|ref|YP_001540853.1| - 8.2e-47 158.7 0.2 1.2e-46 158.1 0.1 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_23 PF13384.1 gi|159041601|ref|YP_001540853.1| - 2.6e-06 26.8 0.0 7.2e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|159041601|ref|YP_001540853.1| - 1.2e-05 25.0 0.0 3.7e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|159041601|ref|YP_001540853.1| - 0.00028 20.6 0.4 0.0013 18.5 0.1 2.3 2 0 0 2 2 1 1 Helix-turn-helix HTH_28 PF13518.1 gi|159041601|ref|YP_001540853.1| - 0.00034 20.5 0.1 0.00079 19.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|159041601|ref|YP_001540853.1| - 0.041 13.2 0.0 0.087 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|159041601|ref|YP_001540853.1| - 0.047 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.1 gi|159041601|ref|YP_001540853.1| - 0.067 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|159041601|ref|YP_001540853.1| - 0.07 12.4 0.0 0.23 10.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|159041601|ref|YP_001540853.1| - 0.074 13.2 0.1 0.26 11.4 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn helix RepB PF07506.6 gi|159041601|ref|YP_001540853.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_38 PF13936.1 gi|159041601|ref|YP_001540853.1| - 0.084 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|159041601|ref|YP_001540853.1| - 0.13 12.0 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Saccharop_dh PF03435.13 gi|159041602|ref|YP_001540854.1| - 5.6e-35 121.0 0.0 7.2e-35 120.6 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|159041602|ref|YP_001540854.1| - 8.9e-07 28.9 0.1 1.6e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|159041602|ref|YP_001540854.1| - 2.6e-06 27.7 0.0 4.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|159041602|ref|YP_001540854.1| - 1.3e-05 25.1 0.1 2.3e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|159041602|ref|YP_001540854.1| - 0.00019 21.8 0.1 0.00038 20.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|159041602|ref|YP_001540854.1| - 0.0083 15.0 0.1 0.024 13.5 0.0 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase ApbA PF02558.11 gi|159041602|ref|YP_001540854.1| - 0.015 14.7 0.1 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|159041602|ref|YP_001540854.1| - 0.021 14.5 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF973 PF06157.6 gi|159041603|ref|YP_001540855.1| - 0.05 12.5 12.7 0.45 9.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF973) DUF4064 PF13273.1 gi|159041603|ref|YP_001540855.1| - 0.11 12.5 10.6 0.37 10.9 3.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Glycophorin_A PF01102.13 gi|159041603|ref|YP_001540855.1| - 0.81 9.4 5.3 3.1 7.5 1.6 2.2 2 0 0 2 2 2 0 Glycophorin A DoxX PF07681.7 gi|159041603|ref|YP_001540855.1| - 1.7 9.1 7.5 0.98 9.8 0.3 2.3 2 0 0 2 2 2 0 DoxX MMgT PF10270.4 gi|159041603|ref|YP_001540855.1| - 2.6 8.4 4.9 3.5 8.0 0.0 2.3 2 1 0 2 2 2 0 Membrane magnesium transporter CRPA PF05745.6 gi|159041603|ref|YP_001540855.1| - 3 7.6 11.0 6.1 6.6 2.9 2.2 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF3185 PF11381.3 gi|159041603|ref|YP_001540855.1| - 4.3 7.1 15.2 5.6 6.8 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) DUF1469 PF07332.6 gi|159041603|ref|YP_001540855.1| - 4.6 6.9 16.2 0.16 11.7 1.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1469) DUF3040 PF11239.3 gi|159041603|ref|YP_001540855.1| - 8.1 6.5 10.9 12 6.0 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF872 PF05915.7 gi|159041603|ref|YP_001540855.1| - 9.4 6.1 7.6 17 5.3 0.1 2.3 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Adenosine_kin PF04008.9 gi|159041605|ref|YP_001540857.1| - 1.2e-69 232.7 0.0 1.3e-69 232.6 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DegT_DnrJ_EryC1 PF01041.12 gi|159041606|ref|YP_001540858.1| - 7.5e-111 370.6 0.0 8.6e-111 370.4 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|159041606|ref|YP_001540858.1| - 1.2e-09 37.6 0.0 2.1e-09 36.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|159041606|ref|YP_001540858.1| - 3.4e-07 29.3 0.2 2.4e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|159041606|ref|YP_001540858.1| - 5.5e-06 24.9 0.0 7.7e-06 24.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|159041606|ref|YP_001540858.1| - 0.00025 20.2 0.0 0.00037 19.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SIS PF01380.17 gi|159041606|ref|YP_001540858.1| - 0.066 12.8 0.1 11 5.5 0.0 2.6 2 0 0 2 2 2 0 SIS domain PMT PF02366.13 gi|159041607|ref|YP_001540859.1| - 3.4e-10 39.7 32.1 8e-10 38.4 11.3 4.5 3 2 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.1 gi|159041607|ref|YP_001540859.1| - 1.2e-06 28.5 17.7 1.2e-06 28.5 12.3 3.7 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Rhabdo_glycop PF00974.13 gi|159041608|ref|YP_001540860.1| - 0.028 12.6 0.3 0.031 12.5 0.2 1.1 1 0 0 1 1 1 0 Rhabdovirus spike glycoprotein GATase PF00117.23 gi|159041609|ref|YP_001540861.1| - 3.6e-51 173.3 0.0 4.2e-51 173.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|159041609|ref|YP_001540861.1| - 3.3e-14 52.8 0.0 5e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|159041610|ref|YP_001540862.1| - 6.9e-87 291.0 0.0 8.3e-87 290.7 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|159041610|ref|YP_001540862.1| - 3.1e-09 36.9 0.1 1.1e-08 35.2 0.0 2.0 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region Rhabdo_M2 PF04785.7 gi|159041610|ref|YP_001540862.1| - 0.047 12.7 0.0 0.088 11.8 0.0 1.4 1 0 0 1 1 1 0 Rhabdovirus matrix protein M2 PRAI PF00697.17 gi|159041611|ref|YP_001540863.1| - 4.9e-21 75.1 0.0 5.6e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.16 gi|159041612|ref|YP_001540864.1| - 6.6e-78 261.6 0.1 8.9e-78 261.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|159041612|ref|YP_001540864.1| - 1e-16 60.2 3.2 2.2e-16 59.1 1.7 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PUB PF09409.5 gi|159041612|ref|YP_001540864.1| - 0.084 12.6 0.0 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 PUB domain PALP PF00291.20 gi|159041613|ref|YP_001540865.1| - 3.9e-40 137.9 0.1 5.1e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|159041614|ref|YP_001540866.1| - 2.4e-24 85.2 0.0 3.3e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|159041614|ref|YP_001540866.1| - 7.1e-05 22.1 0.0 0.00018 20.8 0.0 1.6 2 0 0 2 2 2 1 PcrB family NanE PF04131.9 gi|159041614|ref|YP_001540866.1| - 0.033 13.1 0.0 0.11 11.3 0.0 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|159041614|ref|YP_001540866.1| - 0.035 13.3 0.1 0.1 11.8 0.0 1.7 2 1 0 2 2 2 0 Histidine biosynthesis protein IMPDH PF00478.20 gi|159041614|ref|YP_001540866.1| - 0.15 10.9 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Aldo_ket_red PF00248.16 gi|159041615|ref|YP_001540867.1| - 4.1e-72 242.3 0.0 4.6e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RIO1 PF01163.17 gi|159041616|ref|YP_001540868.1| - 1.1e-37 129.2 0.1 1.7e-37 128.6 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|159041616|ref|YP_001540868.1| - 5.7e-17 61.5 0.2 1.3e-16 60.4 0.1 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|159041616|ref|YP_001540868.1| - 1.1e-11 44.9 3.3 7.6e-07 29.0 0.0 3.0 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|159041616|ref|YP_001540868.1| - 5.4e-08 32.3 0.0 9.9e-08 31.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|159041616|ref|YP_001540868.1| - 5e-05 22.6 0.6 0.0001 21.6 0.0 1.7 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|159041616|ref|YP_001540868.1| - 0.00027 20.0 0.2 0.0017 17.4 0.2 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.15 gi|159041616|ref|YP_001540868.1| - 0.00076 19.1 0.1 0.0014 18.2 0.1 1.4 1 0 0 1 1 1 1 Choline/ethanolamine kinase HTH_11 PF08279.7 gi|159041616|ref|YP_001540868.1| - 0.085 12.5 0.1 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain Pkinase_Tyr PF07714.12 gi|159041616|ref|YP_001540868.1| - 0.085 11.9 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase PUA PF01472.15 gi|159041617|ref|YP_001540869.1| - 4.1e-21 74.4 0.7 4.4e-20 71.1 0.1 2.1 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.5 gi|159041617|ref|YP_001540869.1| - 0.0022 17.6 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) SKG6 PF08693.5 gi|159041618|ref|YP_001540870.1| - 0.058 12.7 6.6 0.084 12.2 4.6 1.2 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Sec61_beta PF03911.11 gi|159041618|ref|YP_001540870.1| - 1.4 8.8 4.8 1.8 8.4 3.3 1.3 1 1 0 1 1 1 0 Sec61beta family DHDPS PF00701.17 gi|159041619|ref|YP_001540871.1| - 2e-08 33.2 0.2 2.8e-08 32.7 0.2 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ceramidase_alk PF04734.8 gi|159041620|ref|YP_001540872.1| - 2e-11 42.5 0.0 4.2e-06 24.9 0.0 2.1 2 0 0 2 2 2 2 Neutral/alkaline non-lysosomal ceramidase KH_5 PF13184.1 gi|159041621|ref|YP_001540873.1| - 1e-08 34.8 0.2 1e-08 34.8 0.1 1.9 3 0 0 3 3 3 1 NusA-like KH domain DNA_pol3_delta2 PF13177.1 gi|159041621|ref|YP_001540873.1| - 0.12 12.0 0.2 0.23 11.1 0.1 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AA_permease_2 PF13520.1 gi|159041622|ref|YP_001540874.1| - 2.4e-37 128.5 40.5 2.9e-37 128.2 28.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159041622|ref|YP_001540874.1| - 6.7e-34 117.0 36.1 8e-34 116.7 24.4 1.6 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|159041622|ref|YP_001540874.1| - 6.4e-10 38.1 12.6 6.4e-10 38.1 8.8 2.1 2 1 0 2 2 2 1 Spore germination protein Brix PF04427.13 gi|159041623|ref|YP_001540875.1| - 2.3e-20 73.0 0.0 2.7e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 Brix domain Bromodomain PF00439.20 gi|159041623|ref|YP_001540875.1| - 0.052 13.4 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Bromodomain Ribosomal_L30 PF00327.15 gi|159041624|ref|YP_001540876.1| - 5.2e-13 48.3 0.0 1e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e HTH_5 PF01022.15 gi|159041625|ref|YP_001540877.1| - 6.3e-06 25.7 0.0 1.4e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|159041625|ref|YP_001540877.1| - 0.0011 18.6 0.0 0.0029 17.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|159041625|ref|YP_001540877.1| - 0.0026 17.4 0.0 0.0078 15.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|159041625|ref|YP_001540877.1| - 0.0043 16.8 0.0 0.0078 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|159041625|ref|YP_001540877.1| - 0.0069 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|159041625|ref|YP_001540877.1| - 0.0074 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|159041625|ref|YP_001540877.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|159041625|ref|YP_001540877.1| - 0.022 14.4 0.0 0.053 13.1 0.0 1.6 1 0 0 1 1 1 0 MarR family FhuF_C PF11575.3 gi|159041625|ref|YP_001540877.1| - 0.023 14.2 0.3 0.051 13.2 0.2 1.6 1 0 0 1 1 1 0 FhuF 2Fe-2S C-terminal domain HTH_27 PF13463.1 gi|159041625|ref|YP_001540877.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DDE_Tnp_1_6 PF13751.1 gi|159041625|ref|YP_001540877.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain Rrf2 PF02082.15 gi|159041625|ref|YP_001540877.1| - 0.13 12.3 0.0 0.34 11.0 0.0 1.6 2 0 0 2 2 1 0 Transcriptional regulator Polyketide_cyc PF03364.15 gi|159041626|ref|YP_001540878.1| - 6.1e-05 23.0 0.0 7.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|159041626|ref|YP_001540878.1| - 0.038 14.1 0.0 0.052 13.7 0.0 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport UPF0118 PF01594.11 gi|159041627|ref|YP_001540879.1| - 0.29 10.0 10.8 0.32 9.9 7.5 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF20 OrfB_Zn_ribbon PF07282.6 gi|159041628|ref|YP_001540880.1| - 2.3e-23 81.6 0.2 4.9e-23 80.5 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|159041628|ref|YP_001540880.1| - 0.025 14.3 0.6 0.046 13.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|159041628|ref|YP_001540880.1| - 0.17 11.1 1.2 0.35 10.1 0.8 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|159041628|ref|YP_001540880.1| - 0.36 10.6 3.8 0.84 9.4 2.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|159041628|ref|YP_001540880.1| - 0.65 9.5 5.0 7.3 6.2 0.3 2.3 1 1 2 3 3 3 0 zinc-ribbon domain Methyltransf_26 PF13659.1 gi|159041629|ref|YP_001540881.1| - 1.3e-13 51.0 0.1 5.7e-13 48.9 0.1 2.1 2 1 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|159041629|ref|YP_001540881.1| - 4.1e-09 35.9 0.0 4.8e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.13 gi|159041629|ref|YP_001540881.1| - 0.00015 21.3 0.0 0.019 14.5 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|159041629|ref|YP_001540881.1| - 0.0007 19.9 0.0 0.002 18.4 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.2 gi|159041629|ref|YP_001540881.1| - 0.0095 15.6 0.5 0.54 10.0 0.4 2.6 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Lon_2 PF13337.1 gi|159041630|ref|YP_001540882.1| - 3.3e-153 510.3 0.0 3.7e-153 510.1 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease zinc_ribbon_4 PF13717.1 gi|159041631|ref|YP_001540883.1| - 0.0006 19.4 0.5 0.7 9.6 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|159041631|ref|YP_001540883.1| - 0.00065 19.2 0.6 0.74 9.4 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|159041631|ref|YP_001540883.1| - 0.0011 18.7 4.2 0.17 11.6 0.2 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|159041631|ref|YP_001540883.1| - 0.0036 17.3 0.1 0.004 17.1 0.1 1.2 1 0 0 1 1 1 1 DnaJ central domain zf-H2C2_2 PF13465.1 gi|159041631|ref|YP_001540883.1| - 0.0054 16.9 4.2 0.99 9.8 0.4 2.3 2 0 0 2 2 2 2 Zinc-finger double domain CpXC PF14353.1 gi|159041631|ref|YP_001540883.1| - 0.0065 16.4 0.4 1.7 8.6 0.0 2.0 2 0 0 2 2 2 1 CpXC protein zf-C2H2_4 PF13894.1 gi|159041631|ref|YP_001540883.1| - 0.0082 16.4 2.3 1.9 9.0 0.1 2.2 2 0 0 2 2 2 2 C2H2-type zinc finger zf-ribbon_3 PF13248.1 gi|159041631|ref|YP_001540883.1| - 0.011 14.9 4.1 0.095 11.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|159041631|ref|YP_001540883.1| - 0.015 15.2 1.4 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|159041631|ref|YP_001540883.1| - 0.019 14.5 1.0 4.2 7.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|159041631|ref|YP_001540883.1| - 0.019 14.4 4.2 0.27 10.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|159041631|ref|YP_001540883.1| - 0.026 14.4 0.2 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|159041631|ref|YP_001540883.1| - 0.035 13.4 0.1 0.039 13.3 0.1 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-ZPR1 PF03367.8 gi|159041631|ref|YP_001540883.1| - 0.052 12.7 0.4 0.057 12.5 0.3 1.1 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zf-C4_Topoisom PF01396.14 gi|159041631|ref|YP_001540883.1| - 0.054 13.0 0.3 8.7 5.9 0.0 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|159041631|ref|YP_001540883.1| - 0.076 12.7 4.5 0.18 11.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.7 gi|159041631|ref|YP_001540883.1| - 0.081 13.0 3.4 0.48 10.5 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_3 PF14369.1 gi|159041631|ref|YP_001540883.1| - 0.096 12.7 2.0 6.8 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger zf-C2H2 PF00096.21 gi|159041631|ref|YP_001540883.1| - 0.12 12.7 3.2 6.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Sec23_Sec24 PF04810.10 gi|159041631|ref|YP_001540883.1| - 0.12 11.9 0.8 2.9 7.5 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-Di19 PF05605.7 gi|159041631|ref|YP_001540883.1| - 0.14 12.2 0.7 2.2 8.4 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Lar_restr_allev PF14354.1 gi|159041631|ref|YP_001540883.1| - 0.27 11.5 2.8 0.58 10.5 2.0 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|159041631|ref|YP_001540883.1| - 0.3 10.9 1.9 5.1 7.0 0.1 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|159041631|ref|YP_001540883.1| - 0.31 10.7 5.7 0.58 9.8 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TF_Zn_Ribbon PF08271.7 gi|159041631|ref|YP_001540883.1| - 0.72 9.2 3.1 12 5.2 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|159041631|ref|YP_001540883.1| - 0.76 9.0 4.4 4.9 6.4 3.1 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger Neurensin PF14927.1 gi|159041632|ref|YP_001540884.1| - 0.013 14.8 1.0 0.018 14.4 0.7 1.1 1 0 0 1 1 1 0 Neurensin DUF2892 PF11127.3 gi|159041632|ref|YP_001540884.1| - 0.53 10.1 4.0 1.7 8.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) DUF2881 PF11087.3 gi|159041632|ref|YP_001540884.1| - 3.6 7.1 10.3 0.1 12.1 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2881) SAM_adeno_trans PF01887.11 gi|159041634|ref|YP_001540886.1| - 9.5e-95 316.5 0.1 1.1e-94 316.3 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase TIR PF01582.15 gi|159041634|ref|YP_001540886.1| - 0.032 13.6 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 TIR domain DNA_binding_1 PF01035.15 gi|159041635|ref|YP_001540887.1| - 3.1e-18 65.2 0.0 4.5e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF2855 PF11017.3 gi|159041635|ref|YP_001540887.1| - 0.16 11.1 0.2 0.21 10.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) ThiS PF02597.15 gi|159041636|ref|YP_001540888.1| - 3e-12 46.7 0.0 3.5e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|159041636|ref|YP_001540888.1| - 9.9e-12 44.8 0.0 1.2e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) Lambda_tail_I PF06805.7 gi|159041636|ref|YP_001540888.1| - 0.02 14.7 0.0 0.023 14.5 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I CGI-121 PF08617.5 gi|159041637|ref|YP_001540889.1| - 0.02 14.5 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Kinase binding protein CGI-121 DisA_N PF02457.11 gi|159041637|ref|YP_001540889.1| - 0.11 11.6 0.0 0.2 10.7 0.0 1.6 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding POR_N PF01855.14 gi|159041638|ref|YP_001540890.1| - 3.2e-63 213.3 0.0 5.1e-63 212.6 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|159041638|ref|YP_001540890.1| - 1.4e-28 99.9 1.0 4.3e-28 98.3 0.2 2.1 3 0 0 3 3 3 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|159041638|ref|YP_001540890.1| - 2e-08 34.1 0.0 7.1e-08 32.4 0.0 1.9 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|159041638|ref|YP_001540890.1| - 3.6e-05 23.3 1.0 0.00012 21.5 0.6 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CW_binding_2 PF04122.7 gi|159041638|ref|YP_001540890.1| - 0.0074 16.4 0.4 0.66 10.2 0.0 3.1 4 0 0 4 4 4 1 Putative cell wall binding repeat 2 DUF3574 PF12098.3 gi|159041638|ref|YP_001540890.1| - 0.14 11.7 0.0 0.47 10.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3574) TPP_enzyme_C PF02775.16 gi|159041639|ref|YP_001540891.1| - 5.4e-32 110.4 0.0 1.2e-31 109.3 0.0 1.6 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|159041639|ref|YP_001540891.1| - 8.9e-15 54.3 1.2 3.4e-14 52.4 0.8 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lactamase_B_3 PF13483.1 gi|159041640|ref|YP_001540892.1| - 4.8e-28 97.9 0.0 6.2e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|159041640|ref|YP_001540892.1| - 2.1e-21 76.3 0.0 2.7e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|159041640|ref|YP_001540892.1| - 7.5e-12 45.3 0.3 1.2e-11 44.6 0.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PALP PF00291.20 gi|159041641|ref|YP_001540893.1| - 5.4e-55 186.7 0.0 6.3e-55 186.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|159041641|ref|YP_001540893.1| - 0.00017 20.6 1.6 0.0003 19.9 1.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|159041641|ref|YP_001540893.1| - 0.0072 15.9 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|159041641|ref|YP_001540893.1| - 0.038 13.8 0.3 0.069 12.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.11 gi|159041641|ref|YP_001540893.1| - 0.043 13.4 2.3 2.1 8.0 0.2 2.2 2 0 0 2 2 2 0 HIT zinc finger Prok-RING_1 PF14446.1 gi|159041641|ref|YP_001540893.1| - 0.05 13.3 0.3 0.088 12.5 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1610 PF07754.6 gi|159041641|ref|YP_001540893.1| - 0.061 13.4 2.1 0.061 13.4 1.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|159041641|ref|YP_001540893.1| - 0.088 12.6 3.4 1 9.2 0.1 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.6 gi|159041641|ref|YP_001540893.1| - 0.091 12.4 0.5 0.19 11.3 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|159041641|ref|YP_001540893.1| - 0.093 12.7 3.7 0.39 10.7 2.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|159041641|ref|YP_001540893.1| - 0.1 12.1 0.5 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|159041641|ref|YP_001540893.1| - 0.12 11.5 0.4 4.9 6.4 0.0 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.8 gi|159041641|ref|YP_001540893.1| - 0.15 11.6 0.6 10 5.7 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|159041641|ref|YP_001540893.1| - 0.15 11.3 2.5 5.4 6.4 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|159041641|ref|YP_001540893.1| - 0.17 11.4 6.7 1.6 8.3 0.2 2.2 1 1 2 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|159041641|ref|YP_001540893.1| - 0.25 10.8 3.1 4.3 6.9 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Mu-like_Com PF10122.4 gi|159041641|ref|YP_001540893.1| - 0.48 9.5 5.1 1.1 8.3 0.6 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com DNA_ligase_ZBD PF03119.11 gi|159041641|ref|YP_001540893.1| - 0.62 9.8 2.8 5.3 6.8 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.21 gi|159041641|ref|YP_001540893.1| - 1.1 9.7 3.4 9.9 6.7 0.4 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|159041641|ref|YP_001540893.1| - 1.2 9.6 4.4 10 6.6 0.4 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|159041641|ref|YP_001540893.1| - 1.2 9.0 3.8 10 5.9 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|159041641|ref|YP_001540893.1| - 6.3 6.2 5.9 14 5.1 0.3 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-CDGSH PF09360.5 gi|159041642|ref|YP_001540894.1| - 6.4e-11 41.8 1.2 9.3e-11 41.3 0.8 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type DUF3311 PF11755.3 gi|159041643|ref|YP_001540895.1| - 9.2e-16 57.1 10.5 9.9e-16 57.0 7.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4212 PF13937.1 gi|159041643|ref|YP_001540895.1| - 0.072 13.0 6.2 0.092 12.7 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) BphX PF06139.7 gi|159041643|ref|YP_001540895.1| - 0.073 12.6 0.9 0.074 12.6 0.6 1.1 1 0 0 1 1 1 0 BphX-like DUF2304 PF10066.4 gi|159041643|ref|YP_001540895.1| - 0.12 12.2 1.3 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Sdh_cyt PF01127.17 gi|159041643|ref|YP_001540895.1| - 0.2 11.5 4.3 0.25 11.1 3.0 1.1 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2975 PF11188.3 gi|159041643|ref|YP_001540895.1| - 0.24 11.1 2.8 0.28 10.8 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4134 PF13572.1 gi|159041643|ref|YP_001540895.1| - 0.29 11.2 2.5 0.19 11.8 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) ABC2_membrane_3 PF12698.2 gi|159041643|ref|YP_001540895.1| - 0.3 10.0 5.3 0.36 9.8 3.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4064 PF13273.1 gi|159041643|ref|YP_001540895.1| - 0.74 9.9 3.8 16 5.6 2.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) ATP1G1_PLM_MAT8 PF02038.11 gi|159041643|ref|YP_001540895.1| - 1.1 8.3 9.0 4.2 6.4 3.2 2.3 2 1 0 2 2 2 0 ATP1G1/PLM/MAT8 family SSF PF00474.12 gi|159041644|ref|YP_001540896.1| - 5.5e-12 45.0 32.7 5.5e-12 45.0 22.6 1.8 1 1 1 2 2 2 1 Sodium:solute symporter family RIC3 PF15361.1 gi|159041644|ref|YP_001540896.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 UPF0051 PF01458.12 gi|159041645|ref|YP_001540897.1| - 1.6e-60 204.4 0.1 2.1e-60 204.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) SGL PF08450.7 gi|159041645|ref|YP_001540897.1| - 0.043 13.1 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 SMP-30/Gluconolaconase/LRE-like region MttA_Hcf106 PF02416.11 gi|159041646|ref|YP_001540898.1| - 1.2e-12 46.7 5.4 2.5e-12 45.7 3.8 1.8 1 1 0 1 1 1 1 mttA/Hcf106 family ATG16 PF08614.6 gi|159041646|ref|YP_001540898.1| - 0.00015 21.6 7.5 0.00017 21.5 5.2 1.0 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF3450 PF11932.3 gi|159041646|ref|YP_001540898.1| - 0.0021 17.3 1.4 0.0021 17.3 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Uds1 PF15456.1 gi|159041646|ref|YP_001540898.1| - 0.0031 17.5 4.7 0.0037 17.2 3.3 1.1 1 0 0 1 1 1 1 Up-regulated During Septation CHD5 PF04420.9 gi|159041646|ref|YP_001540898.1| - 0.0038 16.9 0.9 0.011 15.4 0.6 1.6 1 1 0 1 1 1 1 CHD5-like protein AAA_13 PF13166.1 gi|159041646|ref|YP_001540898.1| - 0.0045 15.5 3.7 0.0047 15.4 2.5 1.0 1 0 0 1 1 1 1 AAA domain Seryl_tRNA_N PF02403.17 gi|159041646|ref|YP_001540898.1| - 0.0065 16.4 6.9 0.0076 16.2 4.8 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain MIS13 PF08202.6 gi|159041646|ref|YP_001540898.1| - 0.0071 15.4 4.1 0.0082 15.2 2.8 1.0 1 0 0 1 1 1 1 Mis12-Mtw1 protein family MAD PF05557.8 gi|159041646|ref|YP_001540898.1| - 0.008 14.3 6.9 0.0093 14.1 4.8 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein Syntaxin-6_N PF09177.6 gi|159041646|ref|YP_001540898.1| - 0.012 15.9 2.0 0.016 15.5 1.4 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF4200 PF13863.1 gi|159041646|ref|YP_001540898.1| - 0.014 15.3 12.0 0.54 10.2 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Spc7 PF08317.6 gi|159041646|ref|YP_001540898.1| - 0.022 13.4 5.9 0.023 13.3 4.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein TMV_coat PF00721.16 gi|159041646|ref|YP_001540898.1| - 0.023 14.6 0.2 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 Virus coat protein (TMV like) ADIP PF11559.3 gi|159041646|ref|YP_001540898.1| - 0.026 14.4 8.7 0.03 14.2 6.1 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF3573 PF12097.3 gi|159041646|ref|YP_001540898.1| - 0.027 13.1 0.7 0.025 13.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) DUF342 PF03961.8 gi|159041646|ref|YP_001540898.1| - 0.048 12.0 3.2 0.049 12.0 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) PEARLI-4 PF05278.7 gi|159041646|ref|YP_001540898.1| - 0.051 12.9 5.1 0.062 12.6 3.5 1.0 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF1664 PF07889.7 gi|159041646|ref|YP_001540898.1| - 0.057 13.2 1.3 0.072 12.8 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Med9 PF07544.8 gi|159041646|ref|YP_001540898.1| - 0.066 12.9 3.9 0.065 12.9 1.5 1.7 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TBPIP PF07106.8 gi|159041646|ref|YP_001540898.1| - 0.067 12.7 8.1 0.2 11.1 5.6 1.7 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PspA_IM30 PF04012.7 gi|159041646|ref|YP_001540898.1| - 0.069 12.4 8.3 0.27 10.5 6.0 1.6 1 1 1 2 2 2 0 PspA/IM30 family YlqD PF11068.3 gi|159041646|ref|YP_001540898.1| - 0.071 13.1 8.8 0.1 12.6 6.1 1.2 1 0 0 1 1 1 0 YlqD protein AKNA PF12443.3 gi|159041646|ref|YP_001540898.1| - 0.084 12.8 4.7 0.098 12.6 3.3 1.1 1 0 0 1 1 1 0 AT-hook-containing transcription factor Reo_sigmaC PF04582.7 gi|159041646|ref|YP_001540898.1| - 0.098 11.8 0.0 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 Reovirus sigma C capsid protein BMFP PF04380.8 gi|159041646|ref|YP_001540898.1| - 0.1 12.7 6.5 0.47 10.6 4.5 1.8 1 1 0 1 1 1 0 Membrane fusogenic activity DUF641 PF04859.7 gi|159041646|ref|YP_001540898.1| - 0.11 12.2 3.7 0.12 12.1 2.6 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) TMF_DNA_bd PF12329.3 gi|159041646|ref|YP_001540898.1| - 0.13 12.1 13.0 0.17 11.7 9.0 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Syntaxin PF00804.20 gi|159041646|ref|YP_001540898.1| - 0.15 12.2 9.1 0.15 12.2 2.0 2.0 1 1 1 2 2 2 0 Syntaxin Fib_alpha PF08702.5 gi|159041646|ref|YP_001540898.1| - 0.15 12.1 7.1 0.59 10.2 5.3 1.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|159041646|ref|YP_001540898.1| - 0.15 11.0 7.1 0.16 10.9 4.9 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF972 PF06156.8 gi|159041646|ref|YP_001540898.1| - 0.16 12.3 4.2 0.21 11.9 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF3552 PF12072.3 gi|159041646|ref|YP_001540898.1| - 0.17 11.1 12.5 0.24 10.5 8.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|159041646|ref|YP_001540898.1| - 0.22 9.3 4.3 0.27 9.0 3.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MerR-DNA-bind PF09278.6 gi|159041646|ref|YP_001540898.1| - 0.25 11.7 4.9 0.43 11.0 3.3 1.6 1 1 0 1 1 1 0 MerR, DNA binding FliD_N PF02465.13 gi|159041646|ref|YP_001540898.1| - 0.26 11.6 2.8 0.32 11.3 1.9 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Cauli_AT PF03233.8 gi|159041646|ref|YP_001540898.1| - 0.27 10.9 3.5 0.32 10.6 2.4 1.1 1 0 0 1 1 1 0 Aphid transmission protein Pox_A_type_inc PF04508.7 gi|159041646|ref|YP_001540898.1| - 0.35 10.7 10.3 0.99 9.3 3.3 2.8 2 1 0 2 2 2 0 Viral A-type inclusion protein repeat DUF4407 PF14362.1 gi|159041646|ref|YP_001540898.1| - 0.57 9.0 3.4 0.68 8.8 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FlaC_arch PF05377.6 gi|159041646|ref|YP_001540898.1| - 0.59 10.0 6.3 0.37 10.7 2.9 1.7 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|159041646|ref|YP_001540898.1| - 0.64 9.5 15.3 1.8 8.1 10.6 1.6 1 1 0 1 1 1 0 IncA protein Atg14 PF10186.4 gi|159041646|ref|YP_001540898.1| - 0.74 8.6 7.1 0.81 8.5 4.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FemAB PF02388.11 gi|159041646|ref|YP_001540898.1| - 0.76 8.3 6.1 0.78 8.3 4.2 1.1 1 0 0 1 1 1 0 FemAB family Mnd1 PF03962.10 gi|159041646|ref|YP_001540898.1| - 0.79 9.3 8.7 0.92 9.1 6.0 1.1 1 0 0 1 1 1 0 Mnd1 family DUF3287 PF11690.3 gi|159041646|ref|YP_001540898.1| - 0.93 9.5 4.7 22 5.1 3.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) OmpH PF03938.9 gi|159041646|ref|YP_001540898.1| - 1.4 8.8 7.8 1.5 8.6 5.4 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) EAP30 PF04157.11 gi|159041646|ref|YP_001540898.1| - 1.4 7.9 6.5 1.8 7.6 4.5 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family DUF4446 PF14584.1 gi|159041646|ref|YP_001540898.1| - 1.5 8.6 5.9 7.2 6.4 4.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Tmemb_9 PF05434.6 gi|159041646|ref|YP_001540898.1| - 1.6 8.5 5.3 1.9 8.2 3.7 1.3 1 1 0 1 1 1 0 TMEM9 TSC22 PF01166.13 gi|159041646|ref|YP_001540898.1| - 1.8 8.5 8.3 1.3 9.0 3.2 2.0 2 0 0 2 2 2 0 TSC-22/dip/bun family DivIC PF04977.10 gi|159041646|ref|YP_001540898.1| - 2 7.9 11.5 1.4 8.4 5.5 2.1 1 1 1 2 2 2 0 Septum formation initiator SlyX PF04102.7 gi|159041646|ref|YP_001540898.1| - 2.7 8.4 6.8 2.2 8.7 2.6 1.9 1 1 1 2 2 2 0 SlyX DUF4140 PF13600.1 gi|159041646|ref|YP_001540898.1| - 4.9 7.6 8.3 18 5.8 5.7 1.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Spc24 PF08286.6 gi|159041646|ref|YP_001540898.1| - 6.9 6.3 10.8 16 5.2 7.4 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Metallophos PF00149.23 gi|159041647|ref|YP_001540899.1| - 9e-13 48.0 1.2 3.6e-11 42.8 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|159041647|ref|YP_001540899.1| - 1.8e-12 47.4 0.0 4.7e-12 46.0 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.14 gi|159041648|ref|YP_001540900.1| - 4.6e-17 61.9 20.3 7.6e-08 31.8 11.6 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|159041648|ref|YP_001540900.1| - 8.6e-14 52.3 87.1 6.2e+02 0.5 60.3 5.4 1 1 0 1 1 1 0 AAA domain Rad50_zn_hook PF04423.9 gi|159041648|ref|YP_001540900.1| - 1.6e-13 49.8 5.8 1.6e-13 49.8 4.0 7.8 9 0 0 9 9 8 1 Rad50 zinc hook motif AAA_13 PF13166.1 gi|159041648|ref|YP_001540900.1| - 3.4e-13 48.9 57.0 7.1e-06 24.7 4.5 4.6 2 1 3 5 5 5 5 AAA domain AAA_21 PF13304.1 gi|159041648|ref|YP_001540900.1| - 2.2e-10 40.9 22.7 1.8e-08 34.7 0.3 4.2 1 1 1 3 3 3 2 AAA domain Reo_sigmaC PF04582.7 gi|159041648|ref|YP_001540900.1| - 3.3e-08 33.0 18.4 0.0019 17.4 0.1 4.2 1 1 3 4 4 4 3 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|159041648|ref|YP_001540900.1| - 3.6e-08 33.5 24.9 0.05 13.8 0.2 7.7 4 2 3 8 8 8 2 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|159041648|ref|YP_001540900.1| - 5.6e-07 29.3 92.9 0.00037 20.1 14.7 5.4 1 1 3 4 4 3 3 IncA protein AAA_29 PF13555.1 gi|159041648|ref|YP_001540900.1| - 1.9e-05 24.0 0.0 4.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|159041648|ref|YP_001540900.1| - 3.9e-05 23.4 0.0 9.2e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ADIP PF11559.3 gi|159041648|ref|YP_001540900.1| - 0.00036 20.4 68.8 0.0038 17.1 4.6 4.9 3 1 1 4 4 4 2 Afadin- and alpha -actinin-Binding Spc7 PF08317.6 gi|159041648|ref|YP_001540900.1| - 0.00045 18.9 9.7 0.00045 18.9 6.7 4.7 1 1 3 5 5 5 2 Spc7 kinetochore protein ABC_tran PF00005.22 gi|159041648|ref|YP_001540900.1| - 0.00092 19.5 20.9 0.13 12.5 0.0 5.3 3 2 0 3 3 2 2 ABC transporter WEMBL PF05701.6 gi|159041648|ref|YP_001540900.1| - 0.0011 17.5 42.8 0.0011 17.5 29.7 3.1 1 1 2 3 3 3 2 Weak chloroplast movement under blue light DUF3584 PF12128.3 gi|159041648|ref|YP_001540900.1| - 0.0019 15.6 68.5 0.074 10.3 7.9 4.2 2 1 1 4 4 4 2 Protein of unknown function (DUF3584) AAA_27 PF13514.1 gi|159041648|ref|YP_001540900.1| - 0.0064 14.2 79.4 0.25 8.9 23.6 6.6 1 1 3 5 5 5 3 AAA domain DUF4200 PF13863.1 gi|159041648|ref|YP_001540900.1| - 0.011 15.6 13.2 0.011 15.6 9.2 7.2 2 2 3 6 6 5 0 Domain of unknown function (DUF4200) Mnd1 PF03962.10 gi|159041648|ref|YP_001540900.1| - 0.012 15.2 4.1 0.012 15.2 2.8 6.2 1 1 5 7 7 7 0 Mnd1 family Shugoshin_N PF07558.6 gi|159041648|ref|YP_001540900.1| - 0.015 14.9 0.7 0.015 14.9 0.5 8.9 9 1 1 10 10 8 0 Shugoshin N-terminal coiled-coil region Prefoldin_2 PF01920.15 gi|159041648|ref|YP_001540900.1| - 0.027 14.2 84.9 0.037 13.7 9.5 9.0 1 1 6 8 8 8 0 Prefoldin subunit AAA_25 PF13481.1 gi|159041648|ref|YP_001540900.1| - 0.038 13.3 0.0 0.038 13.3 0.0 4.6 4 1 0 5 5 5 0 AAA domain DUF869 PF05911.6 gi|159041648|ref|YP_001540900.1| - 0.086 11.0 67.1 0.0075 14.5 2.8 3.8 1 1 1 3 3 3 0 Plant protein of unknown function (DUF869) APG6 PF04111.7 gi|159041648|ref|YP_001540900.1| - 0.12 11.4 81.0 0.41 9.6 8.4 5.1 1 1 2 4 4 4 0 Autophagy protein Apg6 Laminin_II PF06009.7 gi|159041648|ref|YP_001540900.1| - 0.21 11.3 56.7 0.022 14.4 4.1 7.0 2 2 5 7 7 7 0 Laminin Domain II IFT57 PF10498.4 gi|159041648|ref|YP_001540900.1| - 0.36 9.5 63.4 0.033 12.9 2.9 5.4 2 2 3 5 5 5 0 Intra-flagellar transport protein 57 LOH1CR12 PF10158.4 gi|159041648|ref|YP_001540900.1| - 0.39 10.5 20.4 2.1 8.1 0.7 5.3 3 2 3 6 6 5 0 Tumour suppressor protein Fib_alpha PF08702.5 gi|159041648|ref|YP_001540900.1| - 0.55 10.3 44.7 0.47 10.5 1.8 5.4 2 2 2 5 5 5 0 Fibrinogen alpha/beta chain family AAA PF00004.24 gi|159041648|ref|YP_001540900.1| - 0.57 10.3 0.0 0.57 10.3 0.0 4.2 5 2 1 6 6 3 0 ATPase family associated with various cellular activities (AAA) DASH_Dam1 PF08653.5 gi|159041648|ref|YP_001540900.1| - 0.61 9.8 16.7 19 5.1 0.0 7.6 6 2 2 8 8 7 0 DASH complex subunit Dam1 Phage_GP20 PF06810.6 gi|159041648|ref|YP_001540900.1| - 0.65 9.4 62.6 0.52 9.7 1.5 7.2 2 2 4 7 7 7 0 Phage minor structural protein GP20 Filament PF00038.16 gi|159041648|ref|YP_001540900.1| - 1.1 8.6 75.5 0.3 10.5 6.9 4.4 1 1 4 5 5 5 0 Intermediate filament protein HOOK PF05622.7 gi|159041648|ref|YP_001540900.1| - 1.6 6.4 75.0 0.59 7.8 20.2 2.7 1 1 0 2 2 2 0 HOOK protein BLOC1_2 PF10046.4 gi|159041648|ref|YP_001540900.1| - 2.3 8.4 50.7 0.92 9.6 0.9 8.1 2 2 8 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.1 gi|159041648|ref|YP_001540900.1| - 2.6 7.1 89.4 0.27 10.4 4.7 6.8 2 2 5 7 7 7 0 Growth-arrest specific micro-tubule binding DUF948 PF06103.6 gi|159041648|ref|YP_001540900.1| - 3.9 7.4 16.2 29 4.6 0.3 6.1 4 4 3 7 7 7 0 Bacterial protein of unknown function (DUF948) Med9 PF07544.8 gi|159041648|ref|YP_001540900.1| - 4.2 7.1 67.6 0.24 11.1 1.0 9.5 2 2 5 7 7 7 0 RNA polymerase II transcription mediator complex subunit 9 Fez1 PF06818.10 gi|159041648|ref|YP_001540900.1| - 4.6 7.2 75.5 2.3 8.1 16.7 4.9 1 1 4 5 5 5 0 Fez1 EzrA PF06160.7 gi|159041648|ref|YP_001540900.1| - 5.3 5.1 62.1 0.02 13.1 4.2 5.1 2 2 1 5 5 5 0 Septation ring formation regulator, EzrA COG2 PF06148.6 gi|159041648|ref|YP_001540900.1| - 6.8 6.5 57.4 0.039 13.8 1.6 7.8 3 2 3 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 TPP_enzyme_C PF02775.16 gi|159041649|ref|YP_001540901.1| - 4.4e-24 84.7 0.3 1.1e-23 83.4 0.2 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|159041649|ref|YP_001540901.1| - 1.1e-11 44.6 0.8 2e-11 43.8 0.1 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|159041649|ref|YP_001540901.1| - 2.1e-11 42.8 11.5 6.4e-08 31.8 2.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|159041649|ref|YP_001540901.1| - 7.2e-08 32.1 0.7 0.0023 17.4 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.2 gi|159041649|ref|YP_001540901.1| - 8.4e-08 31.6 14.3 7.8e-05 22.3 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041649|ref|YP_001540901.1| - 1.4e-06 27.8 22.7 2.2e-05 24.1 2.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159041649|ref|YP_001540901.1| - 1.4e-05 25.3 13.1 7.2e-05 23.0 8.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159041649|ref|YP_001540901.1| - 1.4e-05 24.7 9.1 3.3e-05 23.6 6.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Transketolase_C PF02780.15 gi|159041649|ref|YP_001540901.1| - 4.4e-05 23.4 0.1 9.5e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4_10 PF13237.1 gi|159041649|ref|YP_001540901.1| - 0.00018 21.2 13.0 0.0026 17.5 2.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159041649|ref|YP_001540901.1| - 0.00021 21.7 4.8 0.042 14.4 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain DXP_synthase_N PF13292.1 gi|159041649|ref|YP_001540901.1| - 0.00068 18.6 0.1 0.021 13.7 0.0 2.3 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_17 PF13534.1 gi|159041649|ref|YP_001540901.1| - 0.0028 17.9 4.3 0.039 14.3 0.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041649|ref|YP_001540901.1| - 0.0036 17.5 12.1 0.01 16.0 8.4 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041649|ref|YP_001540901.1| - 0.015 16.0 2.0 0.015 16.0 1.4 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|159041649|ref|YP_001540901.1| - 0.031 14.1 4.2 0.093 12.6 2.9 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|159041649|ref|YP_001540901.1| - 0.35 11.3 15.0 0.074 13.4 3.1 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|159041649|ref|YP_001540901.1| - 0.69 9.9 12.8 0.9 9.6 2.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159041649|ref|YP_001540901.1| - 3.1 8.2 13.7 9.9 6.6 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|159041650|ref|YP_001540902.1| - 6.4e-35 120.5 0.5 7.5e-35 120.3 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MFS_1 PF07690.11 gi|159041651|ref|YP_001540903.1| - 2.8e-28 98.6 100.8 4.4e-27 94.7 43.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159041651|ref|YP_001540903.1| - 1.5e-27 96.2 45.0 9e-23 80.5 11.3 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|159041651|ref|YP_001540903.1| - 0.0018 16.7 17.3 0.0018 16.7 12.0 2.8 1 1 2 3 3 3 2 MFS/sugar transport protein Herpes_LAMP2 PF06126.6 gi|159041651|ref|YP_001540903.1| - 0.0029 16.0 4.7 0.068 11.5 0.3 2.2 2 0 0 2 2 2 2 Herpesvirus Latent membrane protein 2 AAA_5 PF07728.9 gi|159041652|ref|YP_001540904.1| - 7.2e-27 93.8 0.0 1.4e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|159041652|ref|YP_001540904.1| - 1.1e-05 25.6 0.0 4.2e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|159041652|ref|YP_001540904.1| - 7e-05 22.4 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|159041652|ref|YP_001540904.1| - 0.0031 18.3 0.0 0.13 13.0 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|159041652|ref|YP_001540904.1| - 0.013 15.0 0.0 0.11 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|159041652|ref|YP_001540904.1| - 0.017 15.1 0.1 0.048 13.6 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain YfdX PF10938.3 gi|159041652|ref|YP_001540904.1| - 0.03 14.0 0.6 0.056 13.1 0.4 1.4 1 0 0 1 1 1 0 YfdX protein AAA_19 PF13245.1 gi|159041652|ref|YP_001540904.1| - 0.03 14.0 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|159041652|ref|YP_001540904.1| - 0.035 12.9 0.0 0.083 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.7 gi|159041652|ref|YP_001540904.1| - 0.043 12.8 0.5 0.081 11.9 0.0 1.9 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|159041652|ref|YP_001540904.1| - 0.054 12.9 0.0 0.097 12.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|159041652|ref|YP_001540904.1| - 0.083 12.0 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|159041652|ref|YP_001540904.1| - 0.27 11.4 2.2 1.9 8.6 0.2 3.0 3 1 0 3 3 3 0 AAA domain VWA_2 PF13519.1 gi|159041653|ref|YP_001540905.1| - 1.7e-05 25.0 0.9 4.1e-05 23.7 0.2 2.0 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|159041653|ref|YP_001540905.1| - 0.00095 18.3 0.1 0.0084 15.2 0.1 2.4 1 1 1 2 2 2 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|159041653|ref|YP_001540905.1| - 0.0077 15.9 1.8 0.056 13.1 0.3 2.6 2 1 0 2 2 2 1 von Willebrand factor type A domain Aminotran_1_2 PF00155.16 gi|159041654|ref|YP_001540906.1| - 2.9e-56 190.9 0.0 3.3e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|159041654|ref|YP_001540906.1| - 1.2e-05 24.5 0.0 1.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|159041654|ref|YP_001540906.1| - 0.0001 20.7 0.1 0.00015 20.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|159041654|ref|YP_001540906.1| - 0.00037 19.3 0.0 0.00056 18.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Amidinotransf PF02274.12 gi|159041655|ref|YP_001540907.1| - 2.7e-40 138.2 0.0 3.5e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 Amidinotransferase DUF354 PF04007.7 gi|159041656|ref|YP_001540908.1| - 8.8e-57 192.4 0.0 1e-56 192.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.14 gi|159041656|ref|YP_001540908.1| - 0.11 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase ABC_membrane PF00664.18 gi|159041657|ref|YP_001540909.1| - 2.8e-49 167.9 13.5 3.6e-49 167.6 9.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region DUF1854 PF08909.6 gi|159041657|ref|YP_001540909.1| - 1.1e-41 141.5 0.2 2.3e-41 140.5 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) ABC_tran PF00005.22 gi|159041657|ref|YP_001540909.1| - 1.2e-35 122.7 0.0 2.4e-35 121.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041657|ref|YP_001540909.1| - 2.8e-08 34.0 0.1 0.00049 20.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|159041657|ref|YP_001540909.1| - 2.2e-05 25.2 0.0 6.8e-05 23.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159041657|ref|YP_001540909.1| - 9.8e-05 21.6 0.1 0.0072 15.5 0.0 2.4 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|159041657|ref|YP_001540909.1| - 0.0021 18.3 0.0 0.0062 16.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|159041657|ref|YP_001540909.1| - 0.0032 17.3 0.1 0.0077 16.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|159041657|ref|YP_001540909.1| - 0.0034 17.5 0.1 0.073 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|159041657|ref|YP_001540909.1| - 0.0053 16.2 0.2 0.013 14.9 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|159041657|ref|YP_001540909.1| - 0.0055 16.1 0.0 0.026 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|159041657|ref|YP_001540909.1| - 0.0094 15.1 0.1 0.018 14.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|159041657|ref|YP_001540909.1| - 0.021 14.5 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|159041657|ref|YP_001540909.1| - 0.032 14.1 0.0 0.074 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain KH_2 PF07650.12 gi|159041657|ref|YP_001540909.1| - 0.046 13.2 0.6 0.14 11.7 0.4 1.8 1 0 0 1 1 1 0 KH domain AAA_5 PF07728.9 gi|159041657|ref|YP_001540909.1| - 0.061 13.0 0.0 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|159041657|ref|YP_001540909.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|159041657|ref|YP_001540909.1| - 0.086 13.3 0.1 0.32 11.5 0.0 2.0 2 0 0 2 2 1 0 Miro-like protein RNA_helicase PF00910.17 gi|159041657|ref|YP_001540909.1| - 0.088 12.9 0.1 0.71 10.0 0.0 2.4 3 0 0 3 3 2 0 RNA helicase Zeta_toxin PF06414.7 gi|159041657|ref|YP_001540909.1| - 0.1 11.6 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.1 gi|159041657|ref|YP_001540909.1| - 0.16 11.9 0.2 0.59 10.0 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_membrane_3 PF13748.1 gi|159041657|ref|YP_001540909.1| - 1.6 7.6 8.9 3.2 6.7 4.3 2.7 2 1 0 2 2 2 0 ABC transporter transmembrane region ATP-grasp_5 PF13549.1 gi|159041658|ref|YP_001540910.1| - 3.8e-76 255.1 0.0 4.2e-76 255.0 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041658|ref|YP_001540910.1| - 4.1e-06 26.6 0.0 5.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|159041658|ref|YP_001540910.1| - 5.8e-05 22.5 0.0 0.00012 21.5 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|159041658|ref|YP_001540910.1| - 0.0042 16.3 0.1 0.0048 16.2 0.0 1.4 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|159041658|ref|YP_001540910.1| - 0.013 14.8 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.14 gi|159041658|ref|YP_001540910.1| - 0.078 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|159041658|ref|YP_001540910.1| - 0.11 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Succ_CoA_lig PF13607.1 gi|159041659|ref|YP_001540911.1| - 1.1e-48 164.3 0.8 9.3e-48 161.3 0.1 2.7 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|159041659|ref|YP_001540911.1| - 2.5e-27 95.3 1.7 2e-26 92.4 0.5 2.7 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|159041659|ref|YP_001540911.1| - 5.9e-17 61.9 0.8 1.8e-16 60.4 0.5 1.9 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|159041659|ref|YP_001540911.1| - 0.0013 18.4 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Peripla_BP_3 PF13377.1 gi|159041659|ref|YP_001540911.1| - 0.034 14.1 0.1 3.1 7.7 0.0 2.7 3 0 0 3 3 3 0 Periplasmic binding protein-like domain DUF442 PF04273.8 gi|159041659|ref|YP_001540911.1| - 0.077 12.8 0.0 2.3 8.0 0.0 2.4 2 0 0 2 2 2 0 Putative phosphatase (DUF442) Semialdhyde_dh PF01118.19 gi|159041659|ref|YP_001540911.1| - 0.098 12.9 0.4 2 8.7 0.3 2.9 3 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain VIT1 PF01988.14 gi|159041660|ref|YP_001540912.1| - 7.3e-47 159.6 13.7 1e-46 159.1 9.5 1.2 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.12 gi|159041660|ref|YP_001540912.1| - 6.1e-05 23.3 1.0 0.00041 20.6 0.7 2.1 1 1 0 1 1 1 1 Rubrerythrin DoxX_2 PF13564.1 gi|159041660|ref|YP_001540912.1| - 0.0015 18.4 11.5 0.61 10.0 0.0 3.5 3 1 0 3 3 3 2 DoxX-like family Aconitase_C PF00694.14 gi|159041660|ref|YP_001540912.1| - 0.11 12.6 0.4 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 Aconitase C-terminal domain Lactamase_B PF00753.22 gi|159041662|ref|YP_001540914.1| - 1.6e-09 37.7 0.0 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|159041662|ref|YP_001540914.1| - 0.14 11.6 0.0 0.32 10.4 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain NAD_binding_2 PF03446.10 gi|159041663|ref|YP_001540915.1| - 1.8e-37 128.7 0.8 2.7e-37 128.1 0.5 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|159041663|ref|YP_001540915.1| - 2.3e-30 105.1 0.2 3.3e-30 104.6 0.1 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Shikimate_DH PF01488.15 gi|159041663|ref|YP_001540915.1| - 8.6e-08 32.3 0.3 1.7e-07 31.3 0.2 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|159041663|ref|YP_001540915.1| - 3e-06 26.7 0.1 4.8e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|159041663|ref|YP_001540915.1| - 4.1e-06 27.1 0.2 1.1e-05 25.7 0.1 1.8 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|159041663|ref|YP_001540915.1| - 0.00016 20.9 0.1 0.00025 20.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|159041663|ref|YP_001540915.1| - 0.00022 21.7 0.0 0.00042 20.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.13 gi|159041663|ref|YP_001540915.1| - 0.0075 15.9 0.5 0.21 11.2 0.0 2.4 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|159041663|ref|YP_001540915.1| - 0.012 15.8 0.8 3.6 7.9 0.1 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding 7TMR-DISM_7TM PF07695.6 gi|159041664|ref|YP_001540916.1| - 0.038 13.6 3.7 0.037 13.6 2.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF3784 PF12650.2 gi|159041664|ref|YP_001540916.1| - 0.058 13.3 2.7 0.059 13.3 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF2788 PF10981.3 gi|159041664|ref|YP_001540916.1| - 0.31 10.8 4.7 0.32 10.8 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2788) DUF805 PF05656.9 gi|159041664|ref|YP_001540916.1| - 0.96 9.2 3.4 1.2 8.9 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF4229 PF14012.1 gi|159041664|ref|YP_001540916.1| - 2.2 8.2 10.4 2.7 7.9 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) RseC_MucC PF04246.7 gi|159041664|ref|YP_001540916.1| - 3.8 7.0 5.0 4.5 6.8 3.5 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Radical_SAM PF04055.16 gi|159041665|ref|YP_001540917.1| - 4.7e-23 82.1 0.0 1.4e-22 80.5 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|159041665|ref|YP_001540917.1| - 1.6e-08 34.7 0.1 7.4e-08 32.6 0.0 2.1 1 1 1 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|159041665|ref|YP_001540917.1| - 2.4e-08 34.1 0.0 5.7e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159041665|ref|YP_001540917.1| - 1.3e-07 31.6 0.0 3.4e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|159041665|ref|YP_001540917.1| - 8.7e-06 25.1 0.0 1.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|159041665|ref|YP_001540917.1| - 0.0022 17.6 0.0 0.0041 16.7 0.0 1.4 1 0 0 1 1 1 1 HMGL-like NmrA PF05368.8 gi|159041665|ref|YP_001540917.1| - 0.071 12.3 0.0 0.17 11.1 0.0 1.7 2 0 0 2 2 2 0 NmrA-like family CENP-B_N PF04218.8 gi|159041665|ref|YP_001540917.1| - 0.08 12.3 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_22 PF13309.1 gi|159041665|ref|YP_001540917.1| - 0.11 12.2 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain B12-binding PF02310.14 gi|159041666|ref|YP_001540918.1| - 1.5e-31 108.7 0.0 2.8e-30 104.6 0.0 2.6 2 1 1 3 3 3 1 B12 binding domain Radical_SAM PF04055.16 gi|159041666|ref|YP_001540918.1| - 1.8e-27 96.5 0.2 9.1e-27 94.2 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|159041666|ref|YP_001540918.1| - 0.00062 19.8 0.1 0.0018 18.3 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159041666|ref|YP_001540918.1| - 0.0026 17.7 0.0 0.0067 16.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.5 gi|159041666|ref|YP_001540918.1| - 0.042 12.7 0.1 14 4.4 0.0 3.2 3 1 0 3 3 3 0 Radical SAM N-terminal p450 PF00067.17 gi|159041666|ref|YP_001540918.1| - 0.058 11.8 0.0 0.079 11.4 0.0 1.1 1 0 0 1 1 1 0 Cytochrome P450 Peripla_BP_6 PF13458.1 gi|159041666|ref|YP_001540918.1| - 0.067 12.5 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding protein Big_1 PF02369.11 gi|159041668|ref|YP_001540920.1| - 0.00063 19.6 4.5 0.002 18.0 0.4 3.0 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) NUMOD4 PF07463.6 gi|159041668|ref|YP_001540920.1| - 0.0089 15.8 0.4 2.2 8.2 0.0 3.1 2 0 0 2 2 2 2 NUMOD4 motif S4 PF01479.20 gi|159041669|ref|YP_001540921.1| - 9.2e-17 60.2 0.3 9.2e-17 60.2 0.2 2.7 4 0 0 4 4 4 1 S4 domain CN_hydrolase PF00795.17 gi|159041670|ref|YP_001540922.1| - 3.4e-27 94.9 0.0 5e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Fucose_iso_C PF02952.12 gi|159041672|ref|YP_001540924.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain Spermine_synth PF01564.12 gi|159041673|ref|YP_001540925.1| - 7.6e-65 218.2 0.0 1.5e-64 217.2 0.0 1.4 1 1 1 2 2 2 1 Spermine/spermidine synthase Methyltransf_31 PF13847.1 gi|159041673|ref|YP_001540925.1| - 3.3e-06 26.7 0.0 4.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041673|ref|YP_001540925.1| - 2.2e-05 24.9 0.0 4.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159041673|ref|YP_001540925.1| - 3.2e-05 23.9 0.0 7.4e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|159041673|ref|YP_001540925.1| - 0.00031 20.4 0.0 0.00068 19.2 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|159041673|ref|YP_001540925.1| - 0.00065 19.1 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|159041673|ref|YP_001540925.1| - 0.0026 18.0 0.0 0.0056 17.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159041673|ref|YP_001540925.1| - 0.0033 17.8 0.0 0.0098 16.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|159041673|ref|YP_001540925.1| - 0.013 14.5 0.0 0.022 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF43 Methyltransf_3 PF01596.12 gi|159041673|ref|YP_001540925.1| - 0.018 14.1 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_11 PF08241.7 gi|159041673|ref|YP_001540925.1| - 0.051 14.0 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|159041673|ref|YP_001540925.1| - 0.069 12.3 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 O-methyltransferase NAD_binding_7 PF13241.1 gi|159041673|ref|YP_001540925.1| - 0.084 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_synthase PF02540.12 gi|159041674|ref|YP_001540926.1| - 3.9e-80 268.2 0.0 4.8e-80 267.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|159041674|ref|YP_001540926.1| - 1.7e-07 30.1 0.0 1.3e-05 23.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|159041674|ref|YP_001540926.1| - 0.00017 20.9 0.0 0.00026 20.3 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|159041674|ref|YP_001540926.1| - 0.002 17.6 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|159041674|ref|YP_001540926.1| - 0.052 12.9 0.0 0.077 12.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PhoU PF01895.14 gi|159041675|ref|YP_001540927.1| - 4.2e-09 36.7 4.0 2e-06 28.1 0.6 2.7 1 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|159041675|ref|YP_001540927.1| - 2.9e-06 26.8 0.2 7.6e-06 25.5 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_27 PF13463.1 gi|159041676|ref|YP_001540928.1| - 0.047 14.0 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain zinc_ribbon_5 PF13719.1 gi|159041677|ref|YP_001540929.1| - 0.00013 21.4 0.7 0.16 11.5 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041677|ref|YP_001540929.1| - 0.00013 21.5 0.5 0.15 11.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-CSL PF05207.8 gi|159041677|ref|YP_001540929.1| - 0.0014 18.0 1.2 0.58 9.7 0.0 2.1 1 1 1 2 2 2 2 CSL zinc finger zf-ribbon_3 PF13248.1 gi|159041677|ref|YP_001540929.1| - 0.005 16.0 3.0 0.013 14.6 2.1 1.7 1 1 0 1 1 1 1 zinc-ribbon domain CpXC PF14353.1 gi|159041677|ref|YP_001540929.1| - 0.0057 16.6 0.5 0.15 12.0 0.0 2.2 1 1 1 2 2 2 1 CpXC protein zf-CHCC PF10276.4 gi|159041677|ref|YP_001540929.1| - 0.0065 16.2 1.6 0.0071 16.1 0.1 1.7 2 0 0 2 2 2 1 Zinc-finger domain zf-C2H2_4 PF13894.1 gi|159041677|ref|YP_001540929.1| - 0.01 16.0 2.0 0.43 11.0 0.2 2.5 2 1 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|159041677|ref|YP_001540929.1| - 0.011 15.0 1.3 0.13 11.6 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF1922 PF09082.5 gi|159041677|ref|YP_001540929.1| - 0.017 15.1 0.1 0.019 14.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) Ogr_Delta PF04606.7 gi|159041677|ref|YP_001540929.1| - 0.019 14.5 2.8 0.21 11.2 0.1 2.4 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger DZR PF12773.2 gi|159041677|ref|YP_001540929.1| - 0.022 14.5 0.4 0.047 13.5 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.1 gi|159041677|ref|YP_001540929.1| - 0.034 13.9 1.0 0.11 12.4 0.7 1.7 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_6 PF14599.1 gi|159041677|ref|YP_001540929.1| - 0.051 13.3 0.1 0.068 12.9 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon DNA_RNApol_7kD PF03604.8 gi|159041677|ref|YP_001540929.1| - 0.057 12.8 0.7 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|159041677|ref|YP_001540929.1| - 0.064 13.3 3.9 0.8 9.7 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPXG PF14255.1 gi|159041677|ref|YP_001540929.1| - 0.075 12.8 0.9 0.58 10.0 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Cys_rich_KTR PF14205.1 gi|159041677|ref|YP_001540929.1| - 0.11 11.9 1.7 1.1 8.7 0.0 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR UPF0547 PF10571.4 gi|159041677|ref|YP_001540929.1| - 0.11 12.1 3.9 2.1 8.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PAAR_motif PF05488.8 gi|159041677|ref|YP_001540929.1| - 0.13 12.2 0.4 0.27 11.2 0.0 1.6 1 1 1 2 2 2 0 PAAR motif Mu-like_Com PF10122.4 gi|159041677|ref|YP_001540929.1| - 0.13 11.3 0.3 0.13 11.3 0.2 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-RING_3 PF14369.1 gi|159041677|ref|YP_001540929.1| - 0.14 12.1 5.1 1.9 8.5 3.8 2.1 1 1 1 2 2 2 0 zinc-finger DUF329 PF03884.9 gi|159041677|ref|YP_001540929.1| - 0.14 11.7 2.4 0.37 10.3 1.7 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Zn_ribbon_recom PF13408.1 gi|159041677|ref|YP_001540929.1| - 0.16 12.2 0.6 1.7 8.9 0.0 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2H2 PF00096.21 gi|159041677|ref|YP_001540929.1| - 0.16 12.4 2.4 1.2 9.6 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|159041677|ref|YP_001540929.1| - 0.24 11.7 1.3 0.79 10.1 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|159041677|ref|YP_001540929.1| - 0.25 11.1 5.0 1.1 9.0 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-Di19 PF05605.7 gi|159041677|ref|YP_001540929.1| - 0.46 10.6 3.5 1 9.5 0.2 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|159041677|ref|YP_001540929.1| - 0.5 9.9 4.5 0.66 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|159041677|ref|YP_001540929.1| - 0.62 10.4 2.3 7.8 6.8 0.2 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.8 gi|159041677|ref|YP_001540929.1| - 0.81 9.2 8.3 0.88 9.1 0.5 2.6 2 1 1 3 3 3 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|159041677|ref|YP_001540929.1| - 0.91 9.5 4.3 20 5.2 0.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-HIT PF04438.11 gi|159041677|ref|YP_001540929.1| - 8.6 6.1 7.0 44 3.8 4.9 1.9 1 1 0 1 1 1 0 HIT zinc finger Metallophos_2 PF12850.2 gi|159041678|ref|YP_001540930.1| - 2.3e-21 76.2 0.2 2.7e-21 76.0 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|159041678|ref|YP_001540930.1| - 6.3e-06 25.7 6.2 0.0017 17.7 0.5 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|159041678|ref|YP_001540930.1| - 0.00063 18.9 0.0 0.0034 16.5 0.0 1.9 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily PRP4 PF08799.6 gi|159041678|ref|YP_001540930.1| - 0.028 13.6 0.0 0.077 12.2 0.0 1.8 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like DUF1641 PF07849.6 gi|159041679|ref|YP_001540931.1| - 0.0089 15.6 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HAD_2 PF13419.1 gi|159041680|ref|YP_001540932.1| - 4e-21 76.0 0.0 5e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|159041680|ref|YP_001540932.1| - 2e-12 47.9 0.2 3.4e-11 43.9 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|159041680|ref|YP_001540932.1| - 5.7e-09 36.4 0.0 8.9e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|159041680|ref|YP_001540932.1| - 2.3e-05 24.0 0.0 5.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|159041680|ref|YP_001540932.1| - 9.3e-05 22.1 0.1 0.0018 17.9 0.0 2.2 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.1 gi|159041680|ref|YP_001540932.1| - 0.042 13.7 0.7 0.49 10.3 0.5 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HTH_45 PF14947.1 gi|159041681|ref|YP_001540933.1| - 0.00045 19.9 0.0 0.00095 18.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|159041681|ref|YP_001540933.1| - 0.021 15.1 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|159041681|ref|YP_001540933.1| - 0.042 13.6 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|159041681|ref|YP_001540933.1| - 0.12 11.9 0.1 0.33 10.5 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix LigT_PEase PF02834.11 gi|159041683|ref|YP_001540935.1| - 4.7e-30 103.3 0.0 3.6e-18 65.3 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|159041683|ref|YP_001540935.1| - 1e-13 51.3 0.0 1.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|159041683|ref|YP_001540935.1| - 5.5e-11 42.5 0.0 1.7e-10 41.0 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|159041683|ref|YP_001540935.1| - 0.039 12.9 0.0 0.046 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein Rad51 PF08423.6 gi|159041684|ref|YP_001540936.1| - 9.4e-96 319.6 0.0 1.2e-95 319.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|159041684|ref|YP_001540936.1| - 1.2e-12 47.6 0.0 2.2e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|159041684|ref|YP_001540936.1| - 4.1e-11 42.5 0.0 6.3e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|159041684|ref|YP_001540936.1| - 3.1e-10 39.5 0.1 6.8e-10 38.4 0.1 1.7 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|159041684|ref|YP_001540936.1| - 9.2e-08 32.1 2.2 1.9e-07 31.1 0.1 2.3 2 1 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|159041684|ref|YP_001540936.1| - 0.011 15.8 0.1 0.032 14.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain DNA_pol_lambd_f PF10391.4 gi|159041684|ref|YP_001540936.1| - 0.013 15.0 0.4 0.15 11.6 0.0 2.8 3 1 0 3 3 3 0 Fingers domain of DNA polymerase lambda UPF0079 PF02367.12 gi|159041684|ref|YP_001540936.1| - 0.045 13.3 0.0 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PAXNEB PF05625.6 gi|159041684|ref|YP_001540936.1| - 0.05 12.4 0.4 0.16 10.7 0.1 1.8 1 1 1 2 2 2 0 PAXNEB protein BAF PF02961.9 gi|159041684|ref|YP_001540936.1| - 0.061 13.6 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 Barrier to autointegration factor ATP_bind_1 PF03029.12 gi|159041684|ref|YP_001540936.1| - 0.078 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DnaB_C PF03796.10 gi|159041684|ref|YP_001540936.1| - 0.11 11.3 0.5 9.8 4.9 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain CBS PF00571.23 gi|159041685|ref|YP_001540937.1| - 2.8e-32 110.2 2.2 2.7e-15 55.8 0.2 2.7 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.10 gi|159041685|ref|YP_001540937.1| - 2.9e-25 87.5 0.0 1.1e-24 85.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|159041685|ref|YP_001540937.1| - 3.1e-08 33.6 0.0 6.8e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|159041685|ref|YP_001540937.1| - 1.8e-06 27.4 0.0 5.7e-06 25.8 0.0 1.9 1 0 0 1 1 1 1 HTH domain Sigma70_r3 PF04539.11 gi|159041685|ref|YP_001540937.1| - 0.0014 18.4 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_24 PF13412.1 gi|159041685|ref|YP_001540937.1| - 0.003 16.9 0.0 0.0099 15.2 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|159041685|ref|YP_001540937.1| - 0.0045 16.5 0.0 0.0086 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|159041685|ref|YP_001540937.1| - 0.0048 16.5 0.1 0.019 14.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Put_DNA-bind_N PF06971.8 gi|159041685|ref|YP_001540937.1| - 0.0056 16.4 0.0 0.017 14.9 0.0 1.8 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus Phage_terminase PF10668.4 gi|159041685|ref|YP_001540937.1| - 0.0065 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Phage terminase small subunit PRC PF05239.11 gi|159041685|ref|YP_001540937.1| - 0.013 15.3 0.2 0.16 11.8 0.0 2.6 3 0 0 3 3 3 0 PRC-barrel domain HTH_IclR PF09339.5 gi|159041685|ref|YP_001540937.1| - 0.015 14.8 0.0 0.044 13.3 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|159041685|ref|YP_001540937.1| - 0.031 13.7 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|159041685|ref|YP_001540937.1| - 0.059 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|159041685|ref|YP_001540937.1| - 0.071 12.6 1.0 0.2 11.1 0.1 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_27 PF13463.1 gi|159041685|ref|YP_001540937.1| - 0.075 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|159041685|ref|YP_001540937.1| - 0.078 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|159041685|ref|YP_001540937.1| - 0.15 11.7 0.0 0.45 10.2 0.0 1.9 2 0 0 2 2 1 0 MarR family zf-C2HC5 PF06221.8 gi|159041686|ref|YP_001540938.1| - 0.019 14.7 19.7 0.12 12.1 2.5 3.0 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-B_box PF00643.19 gi|159041686|ref|YP_001540938.1| - 0.28 11.1 21.6 0.75 9.7 3.7 3.8 2 1 1 3 3 3 0 B-box zinc finger DZR PF12773.2 gi|159041686|ref|YP_001540938.1| - 0.7 9.7 18.1 13 5.7 2.6 3.3 1 1 2 3 3 3 0 Double zinc ribbon zf-UDP PF14569.1 gi|159041686|ref|YP_001540938.1| - 0.84 9.4 12.5 1.6 8.5 3.2 2.6 1 1 1 2 2 2 0 Zinc-binding RING-finger zf-CCHC PF00098.18 gi|159041686|ref|YP_001540938.1| - 2.1 8.4 13.9 12 6.0 0.1 4.7 4 0 0 4 4 4 0 Zinc knuckle DUF2180 PF09947.4 gi|159041686|ref|YP_001540938.1| - 2.4 7.9 27.4 0.18 11.5 2.9 3.6 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2180) zinc_ribbon_2 PF13240.1 gi|159041686|ref|YP_001540938.1| - 4.4 6.9 13.5 14 5.3 1.8 4.3 3 1 1 4 4 4 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|159041686|ref|YP_001540938.1| - 6.4 6.5 26.4 39 4.0 5.8 3.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SBP PF03110.9 gi|159041686|ref|YP_001540938.1| - 6.7 7.0 10.3 0.2 11.8 0.8 2.4 1 1 1 2 2 2 0 SBP domain zf-C3HC4_2 PF13923.1 gi|159041686|ref|YP_001540938.1| - 8.6 6.4 23.7 4 7.5 7.7 3.3 1 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Porphobil_deam PF01379.15 gi|159041687|ref|YP_001540939.1| - 3.4e-69 232.0 0.2 4.1e-69 231.7 0.1 1.0 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|159041687|ref|YP_001540939.1| - 7.8e-12 45.1 0.0 2.2e-11 43.7 0.0 1.8 2 0 0 2 2 2 1 Porphobilinogen deaminase, C-terminal domain Glycos_transf_1 PF00534.15 gi|159041688|ref|YP_001540940.1| - 2.4e-20 72.6 0.0 3.9e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159041688|ref|YP_001540940.1| - 7.2e-13 48.8 0.0 1.4e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159041688|ref|YP_001540940.1| - 3.1e-08 33.7 0.1 1.2e-07 31.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Pyr_redox_2 PF07992.9 gi|159041689|ref|YP_001540941.1| - 2.5e-36 125.4 4.7 9.3e-19 68.0 0.0 3.5 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159041689|ref|YP_001540941.1| - 1.4e-25 89.4 3.1 5.4e-21 74.7 0.3 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|159041689|ref|YP_001540941.1| - 4.7e-14 52.0 6.6 6.2e-05 22.0 0.1 3.7 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|159041689|ref|YP_001540941.1| - 7.6e-14 51.6 0.0 2.6e-13 49.9 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|159041689|ref|YP_001540941.1| - 1.9e-10 41.1 0.1 3.6e-06 27.1 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|159041689|ref|YP_001540941.1| - 3.5e-10 39.7 2.2 6.7e-05 22.8 0.1 2.8 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|159041689|ref|YP_001540941.1| - 2.2e-08 33.0 7.3 0.00037 19.1 0.1 4.2 4 1 1 5 5 5 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|159041689|ref|YP_001540941.1| - 2.3e-07 30.0 5.0 0.0015 17.4 0.2 3.3 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.7 gi|159041689|ref|YP_001540941.1| - 4.3e-07 29.1 0.9 0.00036 19.5 0.2 2.8 3 0 0 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|159041689|ref|YP_001540941.1| - 1.3e-05 24.8 0.1 0.036 13.6 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|159041689|ref|YP_001540941.1| - 3.1e-05 23.8 4.5 0.22 11.3 0.0 4.1 4 0 0 4 4 4 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|159041689|ref|YP_001540941.1| - 4.7e-05 22.6 0.1 0.012 14.7 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|159041689|ref|YP_001540941.1| - 9.5e-05 22.3 0.1 0.15 12.0 0.0 2.4 2 0 0 2 2 2 2 TrkA-N domain K_oxygenase PF13434.1 gi|159041689|ref|YP_001540941.1| - 0.00011 21.2 0.0 0.0061 15.5 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|159041689|ref|YP_001540941.1| - 0.00011 21.1 7.7 0.021 13.6 0.2 3.6 4 1 0 4 4 4 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|159041689|ref|YP_001540941.1| - 0.00026 20.1 0.9 0.065 12.2 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.13 gi|159041689|ref|YP_001540941.1| - 0.00034 20.3 0.2 0.043 13.4 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|159041689|ref|YP_001540941.1| - 0.00048 20.3 1.2 1 9.6 0.0 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|159041689|ref|YP_001540941.1| - 0.00076 18.9 0.0 0.0039 16.6 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|159041689|ref|YP_001540941.1| - 0.0011 18.7 0.1 0.067 12.9 0.0 2.7 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.2 gi|159041689|ref|YP_001540941.1| - 0.0042 16.2 7.3 0.047 12.7 0.6 3.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|159041689|ref|YP_001540941.1| - 0.0047 17.3 0.1 0.83 10.1 0.0 2.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|159041689|ref|YP_001540941.1| - 0.028 14.5 0.0 5.5 7.1 0.0 2.7 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AdoHcyase_NAD PF00670.16 gi|159041689|ref|YP_001540941.1| - 0.028 14.2 0.2 1.3 8.8 0.0 3.1 3 1 1 4 4 4 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.16 gi|159041689|ref|YP_001540941.1| - 0.033 14.0 0.8 10 5.9 0.2 2.6 2 0 0 2 2 2 0 ThiF family XdhC_C PF13478.1 gi|159041689|ref|YP_001540941.1| - 0.036 14.3 0.0 2.3 8.5 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain Fibrillarin_2 PF10113.4 gi|159041689|ref|YP_001540941.1| - 0.044 12.1 0.0 0.069 11.4 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin-like archaeal protein Trp_halogenase PF04820.9 gi|159041689|ref|YP_001540941.1| - 0.081 11.5 1.3 0.16 10.5 0.0 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Shikimate_DH PF01488.15 gi|159041689|ref|YP_001540941.1| - 0.13 12.3 2.7 12 5.9 0.1 2.8 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase DNA_ligase_A_M PF01068.16 gi|159041690|ref|YP_001540942.1| - 2.2e-60 203.5 0.0 3.2e-60 202.9 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|159041690|ref|YP_001540942.1| - 5.7e-48 163.0 0.3 2.9e-46 157.4 0.0 3.1 3 1 1 4 4 4 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|159041690|ref|YP_001540942.1| - 6e-25 87.4 0.0 5.9e-24 84.2 0.0 2.3 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|159041690|ref|YP_001540942.1| - 0.0024 17.4 0.1 0.01 15.4 0.0 2.2 2 0 0 2 2 2 1 DNA ligase OB-like domain LytR_cpsA_psr PF03816.9 gi|159041690|ref|YP_001540942.1| - 0.095 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Cell envelope-related transcriptional attenuator domain Acylphosphatase PF00708.13 gi|159041691|ref|YP_001540943.1| - 3.9e-25 87.7 0.1 1.3e-24 86.1 0.1 1.9 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|159041691|ref|YP_001540943.1| - 4.5e-05 23.1 0.0 8.6e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) AIRS_C PF02769.17 gi|159041691|ref|YP_001540943.1| - 7.5e-05 22.7 0.2 0.0002 21.3 0.1 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain TusA PF01206.12 gi|159041692|ref|YP_001540944.1| - 1.6e-09 37.2 0.0 1.7e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Aldose_epim PF01263.15 gi|159041693|ref|YP_001540945.1| - 2.5e-30 105.6 0.0 1.3e-29 103.3 0.0 1.8 1 1 0 1 1 1 1 Aldose 1-epimerase DUF650 PF04894.7 gi|159041694|ref|YP_001540946.1| - 1.7e-89 299.9 0.0 2e-89 299.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|159041694|ref|YP_001540946.1| - 7.8e-24 83.4 0.0 1.3e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF2231 PF09990.4 gi|159041695|ref|YP_001540947.1| - 3.1 8.1 8.0 0.44 10.9 1.3 2.2 1 1 0 2 2 2 0 Predicted membrane protein (DUF2231) DUF1761 PF08570.5 gi|159041695|ref|YP_001540947.1| - 8.1 6.4 10.8 0.27 11.2 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) FHA PF00498.21 gi|159041696|ref|YP_001540948.1| - 7.1e-19 67.6 1.7 8e-19 67.5 0.4 1.6 2 0 0 2 2 2 1 FHA domain DUF104 PF01954.11 gi|159041696|ref|YP_001540948.1| - 0.023 14.7 0.6 0.047 13.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF104 DUF3312 PF11768.3 gi|159041696|ref|YP_001540948.1| - 0.048 11.8 0.1 0.056 11.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3312) Pkinase PF00069.20 gi|159041697|ref|YP_001540949.1| - 5.8e-40 137.0 0.0 1.2e-39 136.0 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|159041697|ref|YP_001540949.1| - 1.5e-28 99.6 0.0 3.7e-28 98.2 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|159041697|ref|YP_001540949.1| - 0.002 17.1 0.0 0.0035 16.3 0.0 1.3 1 0 0 1 1 1 1 Kinase-like APH PF01636.18 gi|159041697|ref|YP_001540949.1| - 0.011 15.4 0.0 3.5 7.2 0.0 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family Kdo PF06293.9 gi|159041697|ref|YP_001540949.1| - 0.026 13.5 0.0 0.04 12.9 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Sec62 PF03839.11 gi|159041697|ref|YP_001540949.1| - 5.6 6.3 6.4 11 5.3 4.4 1.4 1 0 0 1 1 1 0 Translocation protein Sec62 Diphthamide_syn PF01866.12 gi|159041698|ref|YP_001540950.1| - 6.6e-35 120.8 0.0 5.7e-28 98.0 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein DUF72 PF01904.13 gi|159041699|ref|YP_001540951.1| - 2.7e-52 177.8 0.0 3e-52 177.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Dus PF01207.12 gi|159041699|ref|YP_001540951.1| - 0.1 11.3 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) DrsE PF02635.10 gi|159041700|ref|YP_001540952.1| - 4.4e-17 62.2 1.0 5.2e-17 62.0 0.7 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|159041700|ref|YP_001540952.1| - 0.015 15.1 0.1 0.016 14.9 0.1 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family UBA PF00627.26 gi|159041700|ref|YP_001540952.1| - 0.16 11.8 1.7 5.1 7.0 0.1 2.8 3 0 0 3 3 3 0 UBA/TS-N domain SHS2_Rpb7-N PF03876.12 gi|159041701|ref|YP_001540953.1| - 1.5e-19 69.8 0.2 2.9e-19 68.9 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|159041701|ref|YP_001540953.1| - 1.9e-08 34.2 2.0 1.9e-08 34.2 1.4 1.7 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|159041701|ref|YP_001540953.1| - 0.0098 16.0 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 AFOR_C PF01314.13 gi|159041702|ref|YP_001540954.1| - 2.3e-97 326.0 0.0 2.9e-97 325.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|159041702|ref|YP_001540954.1| - 1.2e-72 243.4 2.0 1.8e-72 242.9 1.4 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain LysE PF01810.13 gi|159041703|ref|YP_001540955.1| - 2.7e-23 82.2 14.6 3.2e-23 81.9 10.1 1.1 1 0 0 1 1 1 1 LysE type translocator TMEM238 PF15125.1 gi|159041703|ref|YP_001540955.1| - 0.076 12.9 6.1 1.1 9.2 0.5 2.6 2 0 0 2 2 2 0 TMEM238 protein family MR_MLE_C PF13378.1 gi|159041704|ref|YP_001540956.1| - 2.4e-14 53.2 0.0 4.1e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|159041704|ref|YP_001540956.1| - 3.8e-12 46.5 0.0 7.9e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|159041704|ref|YP_001540956.1| - 6.9e-10 38.9 0.0 1.4e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GD_AH_C PF04295.8 gi|159041705|ref|YP_001540957.1| - 2e-128 428.4 0.0 2.3e-128 428.2 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus WHEP-TRS PF00458.15 gi|159041705|ref|YP_001540957.1| - 0.1 12.2 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 WHEP-TRS domain SAF PF08666.7 gi|159041706|ref|YP_001540958.1| - 1.2e-14 54.4 4.6 3e-14 53.1 3.2 1.8 1 1 0 1 1 1 1 SAF domain DUF2190 PF09956.4 gi|159041706|ref|YP_001540958.1| - 0.00013 21.6 0.1 0.0083 15.8 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2190) PT-HINT PF07591.6 gi|159041706|ref|YP_001540958.1| - 0.16 11.8 0.9 15 5.4 0.0 2.8 1 1 2 3 3 3 0 Pretoxin HINT domain SET PF00856.23 gi|159041706|ref|YP_001540958.1| - 0.16 12.2 0.2 20 5.4 0.0 2.9 2 1 1 3 3 3 0 SET domain MFS_1 PF07690.11 gi|159041708|ref|YP_001540960.1| - 4.8e-17 61.7 48.1 4.1e-15 55.3 10.9 3.0 2 1 0 3 3 3 3 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|159041708|ref|YP_001540960.1| - 0.0023 17.6 2.0 0.0023 17.6 1.4 3.0 4 0 0 4 4 4 1 MFS_1 like family SelA PF03841.8 gi|159041709|ref|YP_001540961.1| - 8.4e-05 21.4 0.0 0.00053 18.8 0.0 2.1 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|159041709|ref|YP_001540961.1| - 9.6e-05 21.2 0.0 0.00021 20.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|159041709|ref|YP_001540961.1| - 0.00041 18.7 0.0 0.00071 17.9 0.0 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|159041709|ref|YP_001540961.1| - 0.012 14.7 0.0 0.038 13.0 0.0 1.7 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|159041709|ref|YP_001540961.1| - 0.086 11.9 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase FMN_dh PF01070.13 gi|159041710|ref|YP_001540962.1| - 4.8e-36 124.3 0.0 5.1e-25 88.0 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|159041710|ref|YP_001540962.1| - 1e-05 24.6 0.5 1e-05 24.6 0.3 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.20 gi|159041710|ref|YP_001540962.1| - 0.00017 20.5 1.8 0.003 16.5 1.3 2.3 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain IcmL PF11393.3 gi|159041710|ref|YP_001540962.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Macrophage killing protein with similarity to conjugation protein zf-RanBP PF00641.13 gi|159041712|ref|YP_001540964.1| - 3.4e-06 26.0 0.4 4.3e-06 25.7 0.3 1.1 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|159041712|ref|YP_001540964.1| - 2.6e-05 23.2 0.8 3.9e-05 22.7 0.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.12 gi|159041712|ref|YP_001540964.1| - 0.00084 18.8 3.2 0.00086 18.8 2.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|159041712|ref|YP_001540964.1| - 0.001 18.4 1.7 0.0015 17.9 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|159041712|ref|YP_001540964.1| - 0.0014 18.4 1.5 0.0017 18.1 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|159041712|ref|YP_001540964.1| - 0.0041 16.5 4.3 0.0061 16.0 3.0 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|159041712|ref|YP_001540964.1| - 0.0065 16.1 0.1 0.0071 16.0 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|159041712|ref|YP_001540964.1| - 0.098 12.3 3.8 0.63 9.7 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit PHD_2 PF13831.1 gi|159041712|ref|YP_001540964.1| - 0.11 11.8 2.9 0.61 9.4 0.2 2.1 2 0 0 2 2 2 0 PHD-finger TF_Zn_Ribbon PF08271.7 gi|159041712|ref|YP_001540964.1| - 0.17 11.2 0.7 5.9 6.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|159041712|ref|YP_001540964.1| - 0.17 11.4 0.2 0.17 11.4 0.1 2.1 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-FPG_IleRS PF06827.9 gi|159041712|ref|YP_001540964.1| - 0.27 10.9 0.6 0.27 10.9 0.4 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS RRN7 PF11781.3 gi|159041712|ref|YP_001540964.1| - 0.45 10.0 8.3 0.37 10.3 1.2 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prim_Zn_Ribbon PF08273.7 gi|159041712|ref|YP_001540964.1| - 0.58 10.2 6.2 0.92 9.6 0.5 2.1 1 1 2 3 3 2 0 Zinc-binding domain of primase-helicase zf-CCHC PF00098.18 gi|159041712|ref|YP_001540964.1| - 0.9 9.5 5.0 5.5 7.1 0.3 2.2 2 0 0 2 2 2 0 Zinc knuckle Zn_Tnp_IS1595 PF12760.2 gi|159041712|ref|YP_001540964.1| - 1.3 8.9 6.5 3 7.7 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|159041712|ref|YP_001540964.1| - 4.8 7.0 10.7 7.8 6.3 1.4 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e Thy1 PF02511.10 gi|159041713|ref|YP_001540965.1| - 1.1e-37 129.3 0.0 1.4e-37 128.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Catalase-rel PF06628.7 gi|159041713|ref|YP_001540965.1| - 0.096 12.5 0.0 0.51 10.2 0.0 2.1 2 0 0 2 2 2 0 Catalase-related immune-responsive HTH_19 PF12844.2 gi|159041714|ref|YP_001540966.1| - 9.6e-07 28.7 0.0 2.6e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|159041714|ref|YP_001540966.1| - 4.5e-05 23.2 0.0 9.4e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|159041714|ref|YP_001540966.1| - 0.00057 20.0 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Abhydrolase_6 PF12697.2 gi|159041715|ref|YP_001540967.1| - 7.4e-25 88.1 0.0 2.1e-24 86.6 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|159041715|ref|YP_001540967.1| - 1.9e-24 86.0 0.1 2.4e-24 85.7 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|159041715|ref|YP_001540967.1| - 3.8e-17 62.2 0.0 5.3e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|159041715|ref|YP_001540967.1| - 1.5e-14 54.1 0.2 2.4e-09 37.0 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.13 gi|159041715|ref|YP_001540967.1| - 4.7e-13 48.9 0.0 9.3e-12 44.6 0.0 2.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|159041715|ref|YP_001540967.1| - 9e-10 38.4 0.0 1.6e-06 27.7 0.0 2.1 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|159041715|ref|YP_001540967.1| - 2.9e-08 32.6 0.2 6.2e-06 24.9 0.1 2.2 1 1 0 2 2 2 2 Acetyl xylan esterase (AXE1) Esterase PF00756.15 gi|159041715|ref|YP_001540967.1| - 5.7e-08 32.4 0.0 1.5e-06 27.8 0.0 2.1 1 1 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.11 gi|159041715|ref|YP_001540967.1| - 9.2e-08 31.7 0.0 0.003 17.0 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.3 gi|159041715|ref|YP_001540967.1| - 7.3e-07 28.9 0.2 2.3e-06 27.3 0.1 1.9 2 0 0 2 2 1 1 Putative lysophospholipase BAAT_C PF08840.6 gi|159041715|ref|YP_001540967.1| - 8.2e-07 28.9 0.1 3.7e-05 23.5 0.1 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|159041715|ref|YP_001540967.1| - 1.6e-05 24.5 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|159041715|ref|YP_001540967.1| - 1.6e-05 24.6 0.0 3.1e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) DUF1100 PF06500.6 gi|159041715|ref|YP_001540967.1| - 0.0001 21.0 0.0 0.00011 20.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Chlorophyllase2 PF12740.2 gi|159041715|ref|YP_001540967.1| - 0.00019 20.4 0.0 0.00064 18.6 0.0 1.8 2 0 0 2 2 2 1 Chlorophyllase enzyme DUF2305 PF10230.4 gi|159041715|ref|YP_001540967.1| - 0.00085 18.8 0.0 0.0026 17.2 0.0 1.6 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2305) DUF2048 PF09752.4 gi|159041715|ref|YP_001540967.1| - 0.00097 18.1 0.2 0.046 12.5 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2048) Chlorophyllase PF07224.6 gi|159041715|ref|YP_001540967.1| - 0.00099 17.9 0.0 0.0017 17.1 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase FSH1 PF03959.8 gi|159041715|ref|YP_001540967.1| - 0.0028 17.1 0.0 0.011 15.1 0.0 1.8 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Esterase_phd PF10503.4 gi|159041715|ref|YP_001540967.1| - 0.0052 16.0 0.3 0.021 14.0 0.2 1.9 1 1 0 1 1 1 1 Esterase PHB depolymerase Abhydrolase_4 PF08386.5 gi|159041715|ref|YP_001540967.1| - 0.0057 16.5 0.0 0.0091 15.8 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein PAF-AH_p_II PF03403.8 gi|159041715|ref|YP_001540967.1| - 0.04 12.2 0.1 0.57 8.4 0.1 2.1 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Acyl_transf_2 PF02273.10 gi|159041715|ref|YP_001540967.1| - 0.055 12.4 0.6 0.15 11.0 0.0 1.8 2 0 0 2 2 2 0 Acyl transferase Ser_hydrolase PF06821.8 gi|159041715|ref|YP_001540967.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase FBPase_3 PF01950.11 gi|159041716|ref|YP_001540968.1| - 8.3e-180 597.5 0.0 9.8e-180 597.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Hjc PF01870.13 gi|159041717|ref|YP_001540969.1| - 7.2e-23 79.9 0.0 9.3e-23 79.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|159041717|ref|YP_001540969.1| - 0.038 14.2 0.0 0.041 14.1 0.0 1.3 1 1 0 1 1 1 0 Nuclease-related domain UPF0102 PF02021.12 gi|159041717|ref|YP_001540969.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0102 MFS_1 PF07690.11 gi|159041718|ref|YP_001540970.1| - 4.2e-26 91.4 44.0 4.2e-26 91.4 30.5 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily Fzo_mitofusin PF04799.8 gi|159041718|ref|YP_001540970.1| - 0.71 9.2 3.7 1.5 8.2 2.5 1.4 1 0 0 1 1 1 0 fzo-like conserved region Peripla_BP_2 PF01497.13 gi|159041720|ref|YP_001540972.1| - 2.8e-24 85.5 0.0 3.9e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Trp_oprn_chp PF09534.5 gi|159041720|ref|YP_001540972.1| - 0.74 9.3 8.8 1.3 8.6 5.5 1.7 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) FecCD PF01032.13 gi|159041721|ref|YP_001540973.1| - 2.6e-65 220.3 42.7 3.2e-65 220.0 29.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|159041721|ref|YP_001540973.1| - 0.0015 17.8 22.7 0.0022 17.3 15.4 1.4 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|159041722|ref|YP_001540974.1| - 5.8e-20 71.9 0.2 1.5e-19 70.6 0.2 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041722|ref|YP_001540974.1| - 1.2e-18 68.0 0.1 5e-10 39.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159041722|ref|YP_001540974.1| - 2.7e-13 49.6 0.9 1.5e-06 27.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|159041722|ref|YP_001540974.1| - 2.2e-11 43.4 0.0 3.2e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|159041722|ref|YP_001540974.1| - 4.4e-07 30.4 0.3 6.8e-07 29.8 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|159041722|ref|YP_001540974.1| - 2.8e-06 27.4 0.3 1e-05 25.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|159041722|ref|YP_001540974.1| - 0.00028 20.3 0.4 0.00071 19.0 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|159041722|ref|YP_001540974.1| - 0.00035 20.7 0.1 0.0015 18.7 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|159041722|ref|YP_001540974.1| - 0.00042 20.2 0.3 0.0016 18.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain AFG1_ATPase PF03969.11 gi|159041722|ref|YP_001540974.1| - 0.0014 17.4 0.1 0.014 14.2 0.1 1.9 1 1 0 1 1 1 1 AFG1-like ATPase NB-ARC PF00931.17 gi|159041722|ref|YP_001540974.1| - 0.0015 17.4 0.2 0.0026 16.6 0.1 1.4 1 1 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.1 gi|159041722|ref|YP_001540974.1| - 0.0021 18.0 0.2 0.018 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|159041722|ref|YP_001540974.1| - 0.0037 16.6 0.9 0.0076 15.6 0.6 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|159041722|ref|YP_001540974.1| - 0.0054 16.4 0.2 0.013 15.1 0.2 1.7 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|159041722|ref|YP_001540974.1| - 0.0062 16.2 1.4 0.0091 15.7 0.3 1.8 2 0 0 2 2 1 1 Part of AAA domain SbcCD_C PF13558.1 gi|159041722|ref|YP_001540974.1| - 0.0095 15.8 0.0 0.052 13.4 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|159041722|ref|YP_001540974.1| - 0.023 14.1 1.0 0.035 13.5 0.2 1.6 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|159041722|ref|YP_001540974.1| - 0.04 13.0 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|159041722|ref|YP_001540974.1| - 0.041 12.3 0.2 0.57 8.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|159041722|ref|YP_001540974.1| - 0.042 13.4 0.5 0.074 12.6 0.4 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|159041722|ref|YP_001540974.1| - 0.049 13.3 0.2 0.12 12.0 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase Gtr1_RagA PF04670.7 gi|159041722|ref|YP_001540974.1| - 0.05 12.7 0.0 0.095 11.8 0.0 1.5 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region IstB_IS21 PF01695.12 gi|159041722|ref|YP_001540974.1| - 0.05 13.0 0.5 4 6.8 0.1 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP_bind_1 PF03029.12 gi|159041722|ref|YP_001540974.1| - 0.084 12.3 1.0 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|159041722|ref|YP_001540974.1| - 0.12 12.0 0.2 0.22 11.1 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|159041722|ref|YP_001540974.1| - 0.14 12.0 0.0 0.37 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|159041722|ref|YP_001540974.1| - 0.14 10.7 3.6 0.36 9.3 0.8 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.14 gi|159041722|ref|YP_001540974.1| - 0.23 10.8 1.9 0.3 10.5 0.2 1.9 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UxuA PF03786.8 gi|159041725|ref|YP_001540977.1| - 1.3e-87 293.6 0.0 1.1e-54 185.3 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|159041725|ref|YP_001540977.1| - 5.9e-09 35.5 0.0 8.5e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SBP_bac_5 PF00496.17 gi|159041726|ref|YP_001540978.1| - 5.8e-26 91.1 0.6 1.6e-19 70.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041726|ref|YP_001540978.1| - 0.023 14.3 9.3 0.041 13.5 6.4 1.4 1 0 0 1 1 1 0 Rifin/stevor family TMEM154 PF15102.1 gi|159041726|ref|YP_001540978.1| - 6.2 6.5 19.7 13 5.4 13.7 1.5 1 0 0 1 1 1 0 TMEM154 protein family MFS_1 PF07690.11 gi|159041727|ref|YP_001540979.1| - 1.5e-21 76.5 55.9 1.1e-15 57.2 30.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OCD_Mu_crystall PF02423.10 gi|159041728|ref|YP_001540980.1| - 3.2e-57 193.6 0.4 4.3e-57 193.2 0.3 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|159041728|ref|YP_001540980.1| - 4.5e-07 30.0 0.1 1e-06 28.9 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|159041728|ref|YP_001540980.1| - 0.005 17.3 0.1 0.0091 16.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|159041728|ref|YP_001540980.1| - 0.01 16.2 0.6 0.037 14.4 0.1 2.1 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent MoeA_N PF03453.12 gi|159041729|ref|YP_001540981.1| - 3.8e-51 172.6 0.0 5.7e-51 172.0 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|159041729|ref|YP_001540981.1| - 2.5e-23 82.1 0.1 3.8e-23 81.4 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|159041729|ref|YP_001540981.1| - 6.5e-17 61.2 0.1 2.5e-16 59.3 0.0 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) RNA_pol_A_bac PF01000.21 gi|159041731|ref|YP_001540983.1| - 3.3e-24 85.1 0.0 6.4e-24 84.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|159041731|ref|YP_001540983.1| - 1.9e-10 39.7 0.0 2.4e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.1 gi|159041731|ref|YP_001540983.1| - 0.59 9.9 6.4 1.3 8.9 4.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Aconitase PF00330.15 gi|159041732|ref|YP_001540984.1| - 3e-64 217.2 0.7 1.1e-41 142.8 0.0 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|159041732|ref|YP_001540984.1| - 0.00019 20.0 0.0 0.00043 18.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF521) IlvN PF07991.7 gi|159041733|ref|YP_001540985.1| - 3.4e-66 221.6 0.0 5e-66 221.1 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|159041733|ref|YP_001540985.1| - 6.4e-46 155.8 0.3 8.5e-46 155.4 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|159041733|ref|YP_001540985.1| - 6.1e-06 25.4 0.1 1.4e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|159041733|ref|YP_001540985.1| - 9e-06 26.0 0.0 2.2e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|159041733|ref|YP_001540985.1| - 1.1e-05 25.2 0.0 2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|159041733|ref|YP_001540985.1| - 0.00031 20.6 0.0 0.00056 19.7 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|159041733|ref|YP_001540985.1| - 0.016 14.6 0.0 0.038 13.4 0.0 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT_5 PF13710.1 gi|159041734|ref|YP_001540986.1| - 2.9e-16 59.0 0.5 5.7e-16 58.0 0.2 1.6 1 1 1 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|159041734|ref|YP_001540986.1| - 0.032 14.5 1.9 0.052 13.8 1.3 1.4 1 0 0 1 1 1 0 ACT domain TPP_enzyme_N PF02776.13 gi|159041735|ref|YP_001540987.1| - 1.2e-55 187.5 0.2 4.1e-54 182.6 0.0 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|159041735|ref|YP_001540987.1| - 1.6e-46 157.6 0.1 2.4e-44 150.5 0.0 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|159041735|ref|YP_001540987.1| - 6.4e-41 139.3 0.1 2.1e-40 137.6 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF552 PF04472.7 gi|159041735|ref|YP_001540987.1| - 0.041 13.8 0.1 0.089 12.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF552) CO_dh PF02552.11 gi|159041735|ref|YP_001540987.1| - 0.069 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.14 gi|159041736|ref|YP_001540988.1| - 9e-79 264.4 2.8 1.3e-78 263.9 2.0 1.2 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.15 gi|159041737|ref|YP_001540989.1| - 7.2e-100 334.3 0.1 8.1e-100 334.1 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|159041737|ref|YP_001540989.1| - 0.0035 16.6 0.0 0.007 15.6 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA DUF3326 PF11805.3 gi|159041737|ref|YP_001540989.1| - 0.0048 15.6 0.2 0.062 12.0 0.0 2.4 2 1 1 3 3 3 1 Protein of unknown function (DUF3326) Aconitase_C PF00694.14 gi|159041738|ref|YP_001540990.1| - 4.1e-18 65.7 0.0 5.5e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain GATase_6 PF13522.1 gi|159041739|ref|YP_001540991.1| - 2.2e-05 24.4 0.0 4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Imm15 PF15590.1 gi|159041739|ref|YP_001540991.1| - 0.076 12.1 0.0 0.18 10.9 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 15 ADH_N PF08240.7 gi|159041740|ref|YP_001540992.1| - 1.4e-26 92.3 0.2 2.7e-26 91.4 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159041740|ref|YP_001540992.1| - 4.9e-23 81.1 0.0 8.5e-23 80.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|159041740|ref|YP_001540992.1| - 5.4e-06 27.3 0.0 1e-05 26.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DUF4377 PF14302.1 gi|159041740|ref|YP_001540992.1| - 0.005 16.7 0.1 0.01 15.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4377) TrkA_N PF02254.13 gi|159041740|ref|YP_001540992.1| - 0.012 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Lactamase_B PF00753.22 gi|159041741|ref|YP_001540993.1| - 0.091 12.3 0.1 9.5 5.8 0.1 2.3 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Acetyltransf_1 PF00583.19 gi|159041743|ref|YP_001540995.1| - 1.3e-14 53.9 0.1 2.6e-14 52.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|159041743|ref|YP_001540995.1| - 1.6e-07 31.4 0.1 3e-07 30.5 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|159041743|ref|YP_001540995.1| - 1.8e-07 31.2 0.0 2.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159041743|ref|YP_001540995.1| - 3.5e-07 29.8 0.1 5.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|159041743|ref|YP_001540995.1| - 0.00012 21.9 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|159041743|ref|YP_001540995.1| - 0.00012 21.8 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|159041743|ref|YP_001540995.1| - 0.006 16.5 0.1 0.0089 15.9 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.5 gi|159041743|ref|YP_001540995.1| - 0.03 14.3 0.0 0.063 13.3 0.0 1.5 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_3 PF13302.1 gi|159041743|ref|YP_001540995.1| - 0.056 13.6 0.0 0.077 13.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Fer4 PF00037.22 gi|159041744|ref|YP_001540996.1| - 2.8e-09 36.1 10.5 8.6e-08 31.4 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041744|ref|YP_001540996.1| - 1.2e-08 34.4 11.4 9.9e-05 22.0 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159041744|ref|YP_001540996.1| - 1.1e-05 25.1 9.0 2.2e-05 24.1 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041744|ref|YP_001540996.1| - 1.6e-05 24.5 11.7 3.1e-05 23.6 1.7 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159041744|ref|YP_001540996.1| - 2.7e-05 24.4 20.1 0.00079 19.7 1.5 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159041744|ref|YP_001540996.1| - 8.1e-05 22.3 9.7 0.00019 21.1 6.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159041744|ref|YP_001540996.1| - 0.00077 19.9 12.8 0.045 14.3 2.3 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|159041744|ref|YP_001540996.1| - 0.0016 18.6 10.7 0.003 17.7 6.7 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|159041744|ref|YP_001540996.1| - 0.013 15.7 3.3 0.013 15.7 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159041744|ref|YP_001540996.1| - 0.041 14.6 1.1 0.041 14.6 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|159041744|ref|YP_001540996.1| - 0.071 13.4 1.2 0.071 13.4 0.8 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|159041744|ref|YP_001540996.1| - 2.2 9.0 17.6 0.11 13.1 3.4 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|159041744|ref|YP_001540996.1| - 3.4 8.1 13.9 0.14 12.5 2.2 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain FlgD_ig PF13860.1 gi|159041746|ref|YP_001540998.1| - 0.021 14.5 0.1 0.04 13.6 0.0 1.6 1 1 0 1 1 1 0 FlgD Ig-like domain HYR PF02494.11 gi|159041746|ref|YP_001540998.1| - 0.048 13.6 0.2 0.098 12.6 0.1 1.6 1 1 0 1 1 1 0 HYR domain GTP_EFTU_D2 PF03144.20 gi|159041747|ref|YP_001540999.1| - 0.056 13.5 0.4 0.17 12.0 0.1 1.9 2 0 0 2 2 2 0 Elongation factor Tu domain 2 Methyltransf_11 PF08241.7 gi|159041748|ref|YP_001541000.1| - 1.6e-20 73.3 0.0 2.8e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159041748|ref|YP_001541000.1| - 4.1e-15 55.6 0.0 5.1e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159041748|ref|YP_001541000.1| - 2.7e-14 53.4 0.0 4.4e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159041748|ref|YP_001541000.1| - 2.4e-13 50.1 0.0 2.9e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041748|ref|YP_001541000.1| - 9.8e-13 48.6 0.0 1.6e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041748|ref|YP_001541000.1| - 7.4e-12 45.5 0.0 1.1e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159041748|ref|YP_001541000.1| - 5.8e-10 39.2 0.0 9.7e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159041748|ref|YP_001541000.1| - 4e-09 36.0 0.0 5.4e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|159041748|ref|YP_001541000.1| - 9e-09 34.7 0.0 1.1e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|159041748|ref|YP_001541000.1| - 1.3e-06 28.1 0.1 3.6e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.8 gi|159041748|ref|YP_001541000.1| - 6.9e-05 22.1 0.0 9e-05 21.7 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|159041748|ref|YP_001541000.1| - 7.9e-05 21.9 0.0 9.9e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.14 gi|159041748|ref|YP_001541000.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_24 PF13578.1 gi|159041748|ref|YP_001541000.1| - 0.012 16.4 0.0 0.017 15.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|159041748|ref|YP_001541000.1| - 0.013 14.8 0.0 0.017 14.5 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|159041748|ref|YP_001541000.1| - 0.027 13.4 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|159041748|ref|YP_001541000.1| - 0.069 12.5 0.0 0.098 12.0 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Rz1 PF06085.6 gi|159041748|ref|YP_001541000.1| - 0.071 12.5 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor MethyltransfD12 PF02086.10 gi|159041748|ref|YP_001541000.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.13 gi|159041748|ref|YP_001541000.1| - 0.11 11.9 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 DNA methylase MFS_1 PF07690.11 gi|159041750|ref|YP_001541002.1| - 4.4e-26 91.4 52.1 2.2e-23 82.5 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|159041750|ref|YP_001541002.1| - 0.034 13.9 0.0 0.034 13.9 0.0 3.7 4 0 0 4 4 4 0 MFS_1 like family MFS_3 PF05977.8 gi|159041750|ref|YP_001541002.1| - 6.4 4.7 21.1 0.08 11.0 4.9 2.4 2 1 0 2 2 2 0 Transmembrane secretion effector PdxA PF04166.7 gi|159041751|ref|YP_001541003.1| - 1.5e-88 296.9 0.1 1.7e-88 296.7 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA tRNA-synt_2 PF00152.15 gi|159041752|ref|YP_001541004.1| - 2.4e-97 325.7 0.1 3e-97 325.4 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|159041752|ref|YP_001541004.1| - 4.7e-10 39.1 0.1 1.1e-09 38.0 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|159041752|ref|YP_001541004.1| - 1.6e-06 27.4 0.3 0.0028 16.8 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|159041752|ref|YP_001541004.1| - 0.0004 20.0 0.1 0.34 10.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetase class II core domain (G, H, P, S and T) Regulator_TrmB PF11495.3 gi|159041753|ref|YP_001541005.1| - 1.9e-59 200.4 0.0 2.4e-59 200.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|159041753|ref|YP_001541005.1| - 4.9e-17 61.3 0.0 9.8e-17 60.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|159041753|ref|YP_001541005.1| - 0.0032 17.2 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|159041753|ref|YP_001541005.1| - 0.0054 16.3 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|159041753|ref|YP_001541005.1| - 0.0074 15.7 0.0 0.019 14.4 0.0 1.7 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|159041753|ref|YP_001541005.1| - 0.021 14.5 0.1 0.04 13.6 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|159041753|ref|YP_001541005.1| - 0.025 14.5 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|159041753|ref|YP_001541005.1| - 0.033 14.2 0.1 0.062 13.4 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.15 gi|159041753|ref|YP_001541005.1| - 0.043 13.4 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|159041753|ref|YP_001541005.1| - 0.055 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_39 PF14090.1 gi|159041753|ref|YP_001541005.1| - 0.06 12.8 0.0 0.17 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|159041753|ref|YP_001541005.1| - 0.065 13.1 0.2 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.15 gi|159041753|ref|YP_001541005.1| - 0.095 12.8 0.1 0.26 11.4 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator SBP_bac_5 PF00496.17 gi|159041754|ref|YP_001541006.1| - 7.4e-28 97.4 11.4 2e-27 96.0 7.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041754|ref|YP_001541006.1| - 0.0062 16.2 9.2 0.0093 15.6 6.4 1.2 1 0 0 1 1 1 1 Rifin/stevor family GFO_IDH_MocA PF01408.17 gi|159041755|ref|YP_001541007.1| - 8.3e-28 97.3 0.0 1.2e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041755|ref|YP_001541007.1| - 0.025 14.3 0.0 0.054 13.2 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.17 gi|159041756|ref|YP_001541008.1| - 4.4e-16 59.4 0.0 8.7e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159041756|ref|YP_001541008.1| - 1.4e-06 28.1 0.0 2.7e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Thermopsin PF05317.6 gi|159041757|ref|YP_001541009.1| - 3.3e-36 124.5 13.4 4.6e-36 124.1 9.3 1.1 1 0 0 1 1 1 1 Thermopsin FAD_binding_3 PF01494.14 gi|159041758|ref|YP_001541010.1| - 2.6e-16 59.6 0.2 6.9e-14 51.6 0.1 2.6 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|159041758|ref|YP_001541010.1| - 1.8e-08 33.6 0.0 3.4e-07 29.5 0.0 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|159041758|ref|YP_001541010.1| - 2.4e-06 27.5 0.1 5.9e-06 26.3 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|159041758|ref|YP_001541010.1| - 5.9e-06 25.4 0.1 0.081 11.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|159041758|ref|YP_001541010.1| - 1.5e-05 24.2 0.1 2.4e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|159041758|ref|YP_001541010.1| - 0.00011 20.9 0.2 0.0065 15.1 0.0 2.9 3 1 1 4 4 4 1 Tryptophan halogenase HI0933_like PF03486.9 gi|159041758|ref|YP_001541010.1| - 0.00015 20.3 0.1 0.00024 19.7 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|159041758|ref|YP_001541010.1| - 0.00022 20.2 0.2 0.00054 18.9 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|159041758|ref|YP_001541010.1| - 0.0023 16.8 0.1 0.0033 16.3 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|159041758|ref|YP_001541010.1| - 0.0027 17.7 1.9 0.0065 16.4 0.0 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|159041758|ref|YP_001541010.1| - 0.013 14.6 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.16 gi|159041758|ref|YP_001541010.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thioredoxin_3 PF13192.1 gi|159041759|ref|YP_001541011.1| - 0.0035 17.1 0.0 0.0089 15.8 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin domain 4HBT_3 PF13622.1 gi|159041759|ref|YP_001541011.1| - 0.048 13.4 4.4 0.07 12.8 3.0 1.3 1 0 0 1 1 1 0 Thioesterase-like superfamily RGS PF00615.14 gi|159041761|ref|YP_001541013.1| - 0.067 13.2 0.0 12 6.0 0.0 2.4 2 0 0 2 2 2 0 Regulator of G protein signaling domain tRNA-synt_1 PF00133.17 gi|159041762|ref|YP_001541014.1| - 9.4e-169 562.2 0.0 1.3e-168 561.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|159041762|ref|YP_001541014.1| - 1.9e-25 89.3 0.1 1.3e-07 30.6 0.1 4.3 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|159041762|ref|YP_001541014.1| - 5.5e-24 84.6 0.0 1.3e-23 83.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|159041762|ref|YP_001541014.1| - 7.8e-08 31.7 0.0 0.00033 19.8 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|159041762|ref|YP_001541014.1| - 0.0017 17.0 0.0 0.0089 14.7 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|159041762|ref|YP_001541014.1| - 0.035 13.4 0.0 0.11 11.8 0.0 1.8 1 1 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 Ribosomal_S6e PF01092.14 gi|159041762|ref|YP_001541014.1| - 0.053 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S6e tRNA-synt_1b PF00579.20 gi|159041762|ref|YP_001541014.1| - 0.18 10.8 0.0 0.45 9.5 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) DUF1122 PF06557.6 gi|159041763|ref|YP_001541015.1| - 3.9e-44 149.8 0.0 4.8e-44 149.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Sugar_tr PF00083.19 gi|159041764|ref|YP_001541016.1| - 5.7e-24 84.5 28.0 5.7e-24 84.5 19.4 2.0 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041764|ref|YP_001541016.1| - 1.8e-19 69.6 42.4 1.8e-19 69.6 29.4 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Neurensin PF14927.1 gi|159041765|ref|YP_001541017.1| - 0.017 14.4 0.5 0.029 13.7 0.4 1.4 1 0 0 1 1 1 0 Neurensin PDGLE PF13190.1 gi|159041765|ref|YP_001541017.1| - 0.31 10.7 3.7 1.4 8.6 2.6 2.2 1 1 0 1 1 1 0 PDGLE domain B3_4 PF03483.12 gi|159041766|ref|YP_001541018.1| - 9.1e-26 90.3 0.0 1.3e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain GMP_synt_C PF00958.17 gi|159041767|ref|YP_001541019.1| - 7.2e-19 67.3 0.5 1.2e-17 63.3 0.6 2.8 2 1 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|159041767|ref|YP_001541019.1| - 1.8e-11 43.4 0.0 7.2e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|159041767|ref|YP_001541019.1| - 4.1e-05 23.1 0.0 9e-05 22.0 0.0 1.5 1 1 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|159041767|ref|YP_001541019.1| - 0.016 14.4 0.0 0.23 10.7 0.0 2.1 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF2392 PF10288.4 gi|159041767|ref|YP_001541019.1| - 0.091 13.0 0.0 0.87 9.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2392) tRNA_Me_trans PF03054.11 gi|159041767|ref|YP_001541019.1| - 0.21 10.0 0.8 5.2 5.5 0.2 2.2 2 0 0 2 2 2 0 tRNA methyl transferase GATase PF00117.23 gi|159041768|ref|YP_001541020.1| - 2.3e-31 108.7 0.0 2.6e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|159041768|ref|YP_001541020.1| - 8.6e-10 38.4 0.0 8.7e-09 35.1 0.0 2.1 1 1 1 2 2 2 1 Peptidase C26 T2SE PF00437.15 gi|159041769|ref|YP_001541021.1| - 3e-50 170.6 0.0 4.2e-50 170.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|159041769|ref|YP_001541021.1| - 0.00044 19.7 0.0 0.00095 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|159041769|ref|YP_001541021.1| - 0.00097 19.4 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|159041769|ref|YP_001541021.1| - 0.016 15.3 0.0 0.11 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|159041769|ref|YP_001541021.1| - 0.023 14.1 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|159041769|ref|YP_001541021.1| - 0.029 13.8 0.1 0.046 13.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|159041769|ref|YP_001541021.1| - 0.03 14.8 0.0 0.058 13.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|159041769|ref|YP_001541021.1| - 0.038 13.4 0.0 0.12 11.8 0.0 1.8 1 0 0 1 1 1 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.13 gi|159041769|ref|YP_001541021.1| - 0.043 13.3 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATP_bind_1 PF03029.12 gi|159041769|ref|YP_001541021.1| - 0.061 12.8 0.1 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|159041769|ref|YP_001541021.1| - 0.065 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|159041769|ref|YP_001541021.1| - 0.076 13.3 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|159041769|ref|YP_001541021.1| - 0.083 12.8 0.0 0.22 11.4 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase SQS_PSY PF00494.14 gi|159041769|ref|YP_001541021.1| - 0.13 11.4 0.2 18 4.4 0.0 2.8 3 0 0 3 3 3 0 Squalene/phytoene synthase Dynamin_N PF00350.18 gi|159041769|ref|YP_001541021.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Dynamin family Polysacc_synt_C PF14667.1 gi|159041770|ref|YP_001541022.1| - 0.92 9.2 61.5 0.035 13.8 10.8 5.0 2 2 0 4 4 4 0 Polysaccharide biosynthesis C-terminal domain TBP PF00352.16 gi|159041771|ref|YP_001541023.1| - 1.7e-68 225.9 0.1 7.4e-34 114.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|159041771|ref|YP_001541023.1| - 1.9e-05 24.6 0.0 0.068 13.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Gly_radical PF01228.16 gi|159041771|ref|YP_001541023.1| - 0.032 14.5 0.0 0.34 11.3 0.0 2.1 2 0 0 2 2 2 0 Glycine radical FerB PF08150.7 gi|159041772|ref|YP_001541024.1| - 0.046 13.7 0.0 0.28 11.2 0.0 2.0 2 0 0 2 2 2 0 FerB (NUC096) domain Rb_C PF08934.5 gi|159041772|ref|YP_001541024.1| - 0.075 12.6 0.0 0.52 9.9 0.0 2.0 2 0 0 2 2 2 0 Rb C-terminal domain Nramp PF01566.13 gi|159041773|ref|YP_001541025.1| - 4.6e-38 130.9 25.3 6.3e-38 130.4 17.5 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MoCF_biosynth PF00994.19 gi|159041774|ref|YP_001541026.1| - 1.1e-37 128.6 0.0 1.6e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain ABC_tran PF00005.22 gi|159041775|ref|YP_001541027.1| - 1.3e-28 100.0 0.0 1.9e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159041775|ref|YP_001541027.1| - 5e-12 46.3 0.0 4.9e-07 30.0 0.0 2.3 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159041775|ref|YP_001541027.1| - 5.9e-05 22.4 0.0 0.036 13.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|159041775|ref|YP_001541027.1| - 0.00022 20.8 0.1 0.00041 19.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|159041775|ref|YP_001541027.1| - 0.00029 20.0 0.0 0.077 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|159041775|ref|YP_001541027.1| - 0.0007 19.0 0.1 0.0013 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|159041775|ref|YP_001541027.1| - 0.0011 18.2 0.0 0.0031 16.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|159041775|ref|YP_001541027.1| - 0.0014 18.4 0.0 0.0041 16.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|159041775|ref|YP_001541027.1| - 0.0035 17.5 0.1 0.022 14.9 0.0 2.3 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|159041775|ref|YP_001541027.1| - 0.0037 16.3 0.0 0.0074 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|159041775|ref|YP_001541027.1| - 0.0057 16.9 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|159041775|ref|YP_001541027.1| - 0.0059 16.7 0.0 0.083 13.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|159041775|ref|YP_001541027.1| - 0.0066 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MutS_V PF00488.16 gi|159041775|ref|YP_001541027.1| - 0.0096 15.3 0.1 5 6.4 0.0 2.4 3 0 0 3 3 2 0 MutS domain V APS_kinase PF01583.15 gi|159041775|ref|YP_001541027.1| - 0.015 14.9 0.1 0.076 12.6 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase SRP54 PF00448.17 gi|159041775|ref|YP_001541027.1| - 0.03 13.7 0.1 0.063 12.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|159041775|ref|YP_001541027.1| - 0.038 13.6 0.2 0.073 12.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|159041775|ref|YP_001541027.1| - 0.05 12.4 0.0 0.08 11.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|159041775|ref|YP_001541027.1| - 0.055 13.3 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|159041775|ref|YP_001541027.1| - 0.057 13.3 0.1 0.32 10.9 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|159041775|ref|YP_001541027.1| - 0.065 14.0 0.1 0.13 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|159041775|ref|YP_001541027.1| - 0.066 12.3 0.0 0.29 10.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|159041775|ref|YP_001541027.1| - 0.068 11.9 0.1 0.1 11.3 0.1 1.2 1 0 0 1 1 1 0 ArgK protein RNA_helicase PF00910.17 gi|159041775|ref|YP_001541027.1| - 0.069 13.3 0.0 0.4 10.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_13 PF13166.1 gi|159041775|ref|YP_001541027.1| - 0.072 11.5 0.0 0.099 11.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|159041775|ref|YP_001541027.1| - 0.078 12.7 0.1 0.35 10.5 0.0 2.0 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|159041775|ref|YP_001541027.1| - 0.079 12.3 0.1 0.21 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|159041775|ref|YP_001541027.1| - 0.085 12.8 0.9 0.31 10.9 0.3 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|159041775|ref|YP_001541027.1| - 0.087 12.5 0.1 0.24 11.1 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain Rad17 PF03215.10 gi|159041775|ref|YP_001541027.1| - 0.09 11.4 0.0 0.17 10.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|159041775|ref|YP_001541027.1| - 0.091 11.7 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|159041775|ref|YP_001541027.1| - 0.099 12.9 0.2 0.21 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|159041775|ref|YP_001541027.1| - 0.11 11.9 0.3 0.2 11.1 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|159041775|ref|YP_001541027.1| - 0.13 11.9 0.2 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|159041775|ref|YP_001541027.1| - 0.16 11.5 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|159041776|ref|YP_001541028.1| - 0.00017 20.8 28.4 0.00026 20.2 19.7 1.3 1 0 0 1 1 1 1 ABC-2 type transporter Glycos_transf_1 PF00534.15 gi|159041778|ref|YP_001541030.1| - 1.2e-19 70.4 0.0 1.8e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159041778|ref|YP_001541030.1| - 2.3e-07 31.0 0.1 4.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|159041778|ref|YP_001541030.1| - 0.00031 20.5 0.1 0.0022 17.7 0.0 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|159041778|ref|YP_001541030.1| - 0.0012 19.0 0.0 0.0029 17.7 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|159041778|ref|YP_001541030.1| - 0.021 15.0 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|159041779|ref|YP_001541031.1| - 5.2e-06 26.2 0.2 9e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159041779|ref|YP_001541031.1| - 4.7e-05 23.2 0.0 0.0015 18.3 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_hydro_4 PF02056.11 gi|159041780|ref|YP_001541032.1| - 5.5e-36 123.5 0.0 8.1e-36 123.0 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|159041780|ref|YP_001541032.1| - 2.9e-32 112.3 0.0 5.4e-32 111.4 0.0 1.4 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|159041780|ref|YP_001541032.1| - 0.14 11.8 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Abhydrolase_3 PF07859.8 gi|159041781|ref|YP_001541033.1| - 6.4e-15 55.3 0.0 7.8e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|159041781|ref|YP_001541033.1| - 2e-12 47.1 0.0 2.5e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|159041781|ref|YP_001541033.1| - 8.4e-11 41.4 0.1 7.8e-09 35.0 0.1 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|159041781|ref|YP_001541033.1| - 2.9e-09 37.1 0.1 3.7e-08 33.5 0.1 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|159041781|ref|YP_001541033.1| - 9.3e-05 21.8 0.0 0.076 12.2 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|159041781|ref|YP_001541033.1| - 0.01 15.3 0.0 0.061 12.7 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DUF4376 PF14301.1 gi|159041781|ref|YP_001541033.1| - 0.041 14.0 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4376) Esterase_phd PF10503.4 gi|159041781|ref|YP_001541033.1| - 0.062 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_1 PF00561.15 gi|159041781|ref|YP_001541033.1| - 0.12 11.8 0.0 1.4 8.4 0.0 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold Mic1 PF07035.7 gi|159041781|ref|YP_001541033.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Colon cancer-associated protein Mic1-like DUF2048 PF09752.4 gi|159041781|ref|YP_001541033.1| - 0.13 11.1 0.0 0.28 9.9 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Glyco_hydro_3 PF00933.16 gi|159041782|ref|YP_001541034.1| - 3.9e-80 269.0 0.0 5.1e-80 268.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|159041782|ref|YP_001541034.1| - 5.7e-62 209.2 0.0 9.1e-62 208.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|159041782|ref|YP_001541034.1| - 6e-25 86.9 0.4 3.7e-21 74.8 0.0 3.6 3 0 0 3 3 3 2 Fibronectin type III-like domain PA14 PF07691.7 gi|159041782|ref|YP_001541034.1| - 1.1e-22 80.3 0.0 2.2e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 PA14 domain CARDB PF07705.6 gi|159041782|ref|YP_001541034.1| - 0.0068 16.4 0.1 0.39 10.8 0.1 2.4 2 0 0 2 2 2 1 CARDB Thermopsin PF05317.6 gi|159041783|ref|YP_001541035.1| - 6.1e-78 261.4 12.9 6.1e-78 261.4 8.9 3.8 3 1 1 4 4 4 1 Thermopsin Topo-VIb_trans PF09239.6 gi|159041784|ref|YP_001541036.1| - 5.5e-63 211.2 0.1 9.5e-63 210.5 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|159041784|ref|YP_001541036.1| - 6e-15 54.9 0.0 1.5e-14 53.6 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|159041784|ref|YP_001541036.1| - 6.1e-13 48.6 0.0 1.2e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|159041784|ref|YP_001541036.1| - 2.2e-05 23.1 0.0 3.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|159041784|ref|YP_001541036.1| - 0.076 13.4 0.0 0.26 11.7 0.0 1.9 1 0 0 1 1 1 0 Ribosomal protein S13/S18 DUF1548 PF07579.6 gi|159041784|ref|YP_001541036.1| - 0.082 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1548) ATP-grasp_2 PF08442.5 gi|159041785|ref|YP_001541037.1| - 2.5e-52 177.2 0.2 3.6e-52 176.6 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|159041785|ref|YP_001541037.1| - 3.5e-17 62.3 0.2 7.2e-17 61.3 0.2 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|159041785|ref|YP_001541037.1| - 3.2e-06 26.5 2.7 3.2e-05 23.2 0.8 2.4 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041785|ref|YP_001541037.1| - 8.4e-05 22.3 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|159041785|ref|YP_001541037.1| - 0.003 16.8 0.1 0.0049 16.1 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CoA_binding PF02629.14 gi|159041786|ref|YP_001541038.1| - 2.3e-29 101.7 1.6 3e-28 98.1 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|159041786|ref|YP_001541038.1| - 2.5e-16 59.6 0.1 3.8e-16 59.0 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|159041786|ref|YP_001541038.1| - 5.6e-11 42.2 0.0 1.2e-10 41.1 0.0 1.5 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|159041786|ref|YP_001541038.1| - 9.4e-09 35.4 0.1 4e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|159041786|ref|YP_001541038.1| - 0.0023 18.4 0.1 0.0043 17.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold PHP PF02811.14 gi|159041786|ref|YP_001541038.1| - 0.091 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 PHP domain SpoU_sub_bind PF08032.7 gi|159041786|ref|YP_001541038.1| - 0.15 12.2 0.7 9.9 6.4 0.0 3.3 3 1 1 4 4 4 0 RNA 2'-O ribose methyltransferase substrate binding DUF2286 PF10051.4 gi|159041787|ref|YP_001541039.1| - 2e-48 163.6 0.6 2.5e-48 163.2 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Hydrolase_3 PF08282.7 gi|159041788|ref|YP_001541040.1| - 7.6e-33 114.1 0.0 9.3e-21 74.5 0.0 2.0 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|159041788|ref|YP_001541040.1| - 4.2e-09 36.0 0.0 3.4e-07 29.8 0.0 2.0 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|159041788|ref|YP_001541040.1| - 6.7e-08 32.9 0.1 3.8e-06 27.1 0.0 2.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|159041788|ref|YP_001541040.1| - 2.9e-07 31.1 1.9 0.009 16.4 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|159041788|ref|YP_001541040.1| - 3.4e-07 29.4 0.0 0.0089 14.9 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase Hydrolase_6 PF13344.1 gi|159041788|ref|YP_001541040.1| - 0.076 12.9 0.0 0.21 11.5 0.0 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase CTP-dep_RFKase PF01982.11 gi|159041789|ref|YP_001541041.1| - 7.1e-46 154.7 0.0 1e-45 154.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|159041789|ref|YP_001541041.1| - 4.6e-08 32.6 0.0 8.4e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|159041789|ref|YP_001541041.1| - 1.1e-07 31.3 0.0 2.3e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|159041789|ref|YP_001541041.1| - 2.4e-06 27.7 0.0 4e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|159041789|ref|YP_001541041.1| - 4.5e-06 25.9 0.0 8.7e-06 25.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|159041789|ref|YP_001541041.1| - 0.00024 20.9 0.0 0.00047 20.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|159041789|ref|YP_001541041.1| - 0.00038 20.1 0.0 0.0011 18.6 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|159041789|ref|YP_001541041.1| - 0.0016 17.8 0.1 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|159041789|ref|YP_001541041.1| - 0.0016 18.4 0.0 0.0056 16.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|159041789|ref|YP_001541041.1| - 0.0025 17.9 0.0 0.0041 17.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|159041789|ref|YP_001541041.1| - 0.005 16.3 0.0 0.04 13.4 0.0 2.1 2 0 0 2 2 2 1 LexA DNA binding domain HTH_10 PF04967.7 gi|159041789|ref|YP_001541041.1| - 0.0068 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.14 gi|159041789|ref|YP_001541041.1| - 0.0069 16.0 0.1 0.016 14.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|159041789|ref|YP_001541041.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator B-block_TFIIIC PF04182.7 gi|159041789|ref|YP_001541041.1| - 0.031 14.1 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_20 PF12840.2 gi|159041789|ref|YP_001541041.1| - 0.035 13.8 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|159041789|ref|YP_001541041.1| - 0.041 14.0 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|159041789|ref|YP_001541041.1| - 0.054 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|159041789|ref|YP_001541041.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Nup35_RRM_2 PF14605.1 gi|159041789|ref|YP_001541041.1| - 0.077 12.7 0.1 0.64 9.8 0.0 2.3 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif HTH_AsnC-type PF13404.1 gi|159041789|ref|YP_001541041.1| - 0.087 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF746 PF05344.6 gi|159041789|ref|YP_001541041.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|159041789|ref|YP_001541041.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain EamA PF00892.15 gi|159041790|ref|YP_001541042.1| - 2e-17 63.3 41.0 2.8e-12 46.7 10.6 2.7 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|159041790|ref|YP_001541042.1| - 0.15 12.2 36.0 0.29 11.3 7.2 3.2 2 1 1 3 3 3 0 Multidrug resistance efflux transporter Alba PF01918.16 gi|159041791|ref|YP_001541043.1| - 1e-11 44.2 0.3 1.5e-11 43.7 0.2 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|159041791|ref|YP_001541043.1| - 0.15 11.6 0.6 0.16 11.6 0.4 1.2 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P TP_methylase PF00590.15 gi|159041792|ref|YP_001541044.1| - 1.6e-33 116.2 0.2 1.8e-33 115.9 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GATase_3 PF07685.9 gi|159041793|ref|YP_001541045.1| - 5.2e-25 87.8 0.2 7.9e-25 87.2 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|159041793|ref|YP_001541045.1| - 1.3e-16 60.5 0.1 2.7e-16 59.5 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|159041793|ref|YP_001541045.1| - 1.9e-10 40.6 0.6 5.8e-06 26.0 0.0 3.0 3 0 0 3 3 3 2 AAA domain Oxidored_molyb PF00174.14 gi|159041794|ref|YP_001541046.1| - 1e-38 132.3 0.0 1.3e-38 132.1 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain ApoO PF09769.4 gi|159041794|ref|YP_001541046.1| - 0.024 14.3 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Apolipoprotein O adh_short_C2 PF13561.1 gi|159041795|ref|YP_001541047.1| - 9.7e-22 77.9 0.1 3.3e-21 76.1 0.1 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|159041795|ref|YP_001541047.1| - 8.5e-18 64.8 2.5 1e-17 64.5 1.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|159041795|ref|YP_001541047.1| - 3.5e-06 27.1 0.0 5.7e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|159041795|ref|YP_001541047.1| - 1.4e-05 24.8 1.0 2e-05 24.3 0.7 1.2 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.21 gi|159041795|ref|YP_001541047.1| - 0.00022 20.7 0.7 0.0038 16.7 0.5 2.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.2 gi|159041795|ref|YP_001541047.1| - 0.0049 17.4 0.0 0.0076 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|159041795|ref|YP_001541047.1| - 0.021 13.8 0.0 0.026 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase 3HCDH_N PF02737.13 gi|159041795|ref|YP_001541047.1| - 0.024 14.2 0.3 0.043 13.4 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|159041795|ref|YP_001541047.1| - 0.069 13.2 0.2 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UPF0075 PF03702.9 gi|159041797|ref|YP_001541049.1| - 1.1e-80 271.3 0.0 1.2e-80 271.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0075) SDH_sah PF01972.11 gi|159041798|ref|YP_001541050.1| - 3.2e-123 410.0 0.2 3.9e-123 409.7 0.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|159041798|ref|YP_001541050.1| - 8e-07 28.8 0.3 1.7e-06 27.7 0.1 1.6 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|159041798|ref|YP_001541050.1| - 0.00041 20.1 0.0 0.0006 19.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 ECH PF00378.15 gi|159041798|ref|YP_001541050.1| - 0.028 13.5 0.1 0.045 12.8 0.1 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family PaREP1 PF05942.6 gi|159041799|ref|YP_001541051.1| - 2.2e-29 101.6 2.3 2.2e-29 101.6 1.6 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF2510 PF10708.4 gi|159041799|ref|YP_001541051.1| - 1.3 8.5 7.5 0.21 11.0 2.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2510) UbiD PF01977.11 gi|159041801|ref|YP_001541053.1| - 1.1e-121 406.1 0.1 1.3e-121 405.8 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thr_dehydrat_C PF00585.13 gi|159041801|ref|YP_001541053.1| - 0.031 13.8 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal regulatory domain of Threonine dehydratase UbiA PF01040.13 gi|159041802|ref|YP_001541054.1| - 1.3e-34 119.5 29.2 1.3e-34 119.5 20.3 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Beta-lactamase PF00144.19 gi|159041803|ref|YP_001541055.1| - 1.2e-54 185.6 0.1 1.5e-54 185.2 0.1 1.0 1 0 0 1 1 1 1 Beta-lactamase TRAM PF01938.15 gi|159041804|ref|YP_001541056.1| - 1.1e-13 50.7 1.5 1.5e-13 50.2 1.1 1.2 1 0 0 1 1 1 1 TRAM domain EIF_2_alpha PF07541.7 gi|159041804|ref|YP_001541056.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|159041804|ref|YP_001541056.1| - 0.35 10.9 5.0 24 5.1 3.5 2.2 1 1 0 1 1 1 0 S1 RNA binding domain ACP_syn_III_C PF08541.5 gi|159041805|ref|YP_001541057.1| - 7.6e-13 48.2 0.0 4.1e-12 45.9 0.0 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.12 gi|159041805|ref|YP_001541057.1| - 0.00017 21.1 0.2 0.00024 20.7 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|159041805|ref|YP_001541057.1| - 0.002 17.1 0.1 0.0032 16.4 0.1 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.5 gi|159041805|ref|YP_001541057.1| - 0.0024 17.4 0.1 0.046 13.1 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|159041805|ref|YP_001541057.1| - 0.041 13.5 0.3 0.18 11.4 0.1 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|159041806|ref|YP_001541058.1| - 3.6e-11 43.1 0.0 5e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|159041806|ref|YP_001541058.1| - 1.7e-09 37.3 3.4 1.7e-09 37.3 2.3 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_C PF02803.13 gi|159041807|ref|YP_001541059.1| - 0.03 13.7 0.1 0.061 12.7 0.1 1.5 1 0 0 1 1 1 0 Thiolase, C-terminal domain Endonuclease_5 PF04493.9 gi|159041809|ref|YP_001541061.1| - 1.4e-47 161.7 0.2 1.9e-47 161.3 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|159041809|ref|YP_001541061.1| - 0.0073 15.4 0.0 0.023 13.8 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF99 DUF357 PF04010.8 gi|159041810|ref|YP_001541062.1| - 1.8e-20 72.3 0.6 1.8e-20 72.3 0.4 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|159041810|ref|YP_001541062.1| - 1.2e-11 44.9 0.0 9.3e-11 42.0 0.0 2.2 1 1 0 1 1 1 1 Cytidylyltransferase DUF498 PF04430.9 gi|159041810|ref|YP_001541062.1| - 0.00036 20.0 0.0 0.00063 19.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Formyl_trans_N PF00551.14 gi|159041810|ref|YP_001541062.1| - 0.083 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Formyl transferase RPN7 PF10602.4 gi|159041810|ref|YP_001541062.1| - 0.087 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Glyco_transf_21 PF13506.1 gi|159041811|ref|YP_001541063.1| - 2.8e-18 65.8 0.1 4.6e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.1 gi|159041811|ref|YP_001541063.1| - 1.9e-17 63.8 0.0 2.6e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|159041811|ref|YP_001541063.1| - 1.1e-16 61.0 0.0 1.6e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|159041811|ref|YP_001541063.1| - 1.7e-05 24.6 7.1 2.9e-05 23.8 4.9 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|159041811|ref|YP_001541063.1| - 0.032 13.3 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Pirin PF02678.11 gi|159041812|ref|YP_001541064.1| - 7.1e-37 125.5 0.0 1.1e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|159041812|ref|YP_001541064.1| - 1.9e-31 108.1 0.0 1.1e-30 105.7 0.0 2.0 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|159041812|ref|YP_001541064.1| - 0.0071 15.8 2.6 0.04 13.4 0.6 2.7 2 1 0 2 2 2 1 Cupin domain OrfB_IS605 PF01385.14 gi|159041813|ref|YP_001541065.1| - 2.5e-74 249.5 0.3 3.3e-74 249.1 0.2 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|159041813|ref|YP_001541065.1| - 1.2e-13 50.4 0.0 2.3e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain MFS_1 PF07690.11 gi|159041814|ref|YP_001541066.1| - 2.6e-13 49.4 39.6 5.3e-13 48.4 27.1 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159041814|ref|YP_001541066.1| - 0.0023 16.5 3.7 0.0023 16.5 2.5 3.6 4 0 0 4 4 4 1 Sugar (and other) transporter DUF1414 PF07208.6 gi|159041814|ref|YP_001541066.1| - 0.0039 16.8 0.5 0.019 14.6 0.4 2.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1414) DUF423 PF04241.10 gi|159041814|ref|YP_001541066.1| - 6.8 6.6 12.0 0.11 12.3 2.3 2.6 3 1 0 3 3 3 0 Protein of unknown function (DUF423) ACT PF01842.20 gi|159041815|ref|YP_001541067.1| - 1.6e-07 30.6 0.4 3.5e-07 29.5 0.3 1.7 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|159041815|ref|YP_001541067.1| - 4.6e-06 26.8 1.3 7.4e-06 26.2 0.2 1.9 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|159041815|ref|YP_001541067.1| - 5.1e-06 26.1 0.0 1.8e-05 24.3 0.0 1.9 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|159041815|ref|YP_001541067.1| - 0.037 13.5 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 ACT domain OSCP PF00213.13 gi|159041815|ref|YP_001541067.1| - 0.056 13.2 0.1 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 ATP synthase delta (OSCP) subunit E1-E2_ATPase PF00122.15 gi|159041816|ref|YP_001541068.1| - 3e-55 186.7 2.7 3.5e-55 186.5 0.6 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|159041816|ref|YP_001541068.1| - 1.2e-43 150.0 0.4 2.6e-43 148.9 0.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|159041816|ref|YP_001541068.1| - 3.5e-21 75.1 0.5 1.5e-15 57.0 0.1 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|159041816|ref|YP_001541068.1| - 3.1e-14 53.5 0.0 8.9e-14 52.0 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|159041816|ref|YP_001541068.1| - 0.00018 21.1 0.4 0.00031 20.3 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase YHS PF04945.8 gi|159041817|ref|YP_001541069.1| - 3.1e-18 65.3 1.5 3.7e-18 65.0 1.0 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|159041817|ref|YP_001541069.1| - 0.00011 22.3 0.5 0.00014 21.9 0.3 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|159041817|ref|YP_001541069.1| - 0.00041 19.9 0.8 0.00056 19.5 0.6 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|159041817|ref|YP_001541069.1| - 0.14 12.0 3.1 0.49 10.2 2.2 1.8 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ribosomal_L24e PF01246.15 gi|159041817|ref|YP_001541069.1| - 0.17 11.7 0.6 0.2 11.5 0.4 1.3 1 1 0 1 1 1 0 Ribosomal protein L24e Arc_trans_TRASH PF08394.5 gi|159041818|ref|YP_001541070.1| - 1.4e-17 63.5 7.2 2.5e-17 62.7 5.0 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.1 gi|159041818|ref|YP_001541070.1| - 5.4e-10 38.5 0.3 5.4e-10 38.5 0.2 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|159041818|ref|YP_001541070.1| - 4e-08 32.7 0.1 8.3e-08 31.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|159041818|ref|YP_001541070.1| - 8.2e-08 31.8 0.1 1.6e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|159041818|ref|YP_001541070.1| - 2e-07 30.5 0.2 4.1e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|159041818|ref|YP_001541070.1| - 7.5e-07 28.6 0.6 1.3e-06 27.9 0.4 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|159041818|ref|YP_001541070.1| - 1.4e-06 27.7 1.9 2.4e-06 26.9 1.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|159041818|ref|YP_001541070.1| - 8.3e-06 25.4 0.2 1.9e-05 24.2 0.2 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|159041818|ref|YP_001541070.1| - 1.7e-05 24.3 0.8 3.6e-05 23.3 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|159041818|ref|YP_001541070.1| - 2e-05 24.0 0.1 4.4e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_17 PF12728.2 gi|159041818|ref|YP_001541070.1| - 0.00013 22.0 1.7 0.00043 20.4 0.1 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|159041818|ref|YP_001541070.1| - 0.00025 20.9 0.0 0.00062 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|159041818|ref|YP_001541070.1| - 0.00041 19.8 0.0 0.00086 18.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain zf-FCS PF06467.9 gi|159041818|ref|YP_001541070.1| - 0.00076 19.0 0.6 0.0013 18.3 0.4 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_36 PF13730.1 gi|159041818|ref|YP_001541070.1| - 0.00082 19.4 0.1 0.0019 18.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|159041818|ref|YP_001541070.1| - 0.001 18.9 0.2 0.0019 18.1 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|159041818|ref|YP_001541070.1| - 0.001 18.8 0.5 0.0021 17.7 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|159041818|ref|YP_001541070.1| - 0.0026 18.0 0.1 0.0057 16.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|159041818|ref|YP_001541070.1| - 0.0043 16.8 0.1 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Mga PF05043.8 gi|159041818|ref|YP_001541070.1| - 0.0043 17.2 0.0 0.0093 16.2 0.0 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_6 PF01418.12 gi|159041818|ref|YP_001541070.1| - 0.0058 16.3 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family Rrf2 PF02082.15 gi|159041818|ref|YP_001541070.1| - 0.0066 16.5 0.2 0.019 15.0 0.1 1.8 1 1 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.1 gi|159041818|ref|YP_001541070.1| - 0.0072 16.4 0.2 0.012 15.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_31 PF13560.1 gi|159041818|ref|YP_001541070.1| - 0.015 15.4 0.3 0.015 15.4 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|159041818|ref|YP_001541070.1| - 0.02 14.4 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|159041818|ref|YP_001541070.1| - 0.028 13.9 0.1 0.052 13.1 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF35_N PF12172.3 gi|159041818|ref|YP_001541070.1| - 0.029 14.2 0.0 0.029 14.2 0.0 1.9 2 0 0 2 2 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HTH_3 PF01381.17 gi|159041818|ref|YP_001541070.1| - 0.029 14.2 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.11 gi|159041818|ref|YP_001541070.1| - 0.031 13.5 0.1 0.06 12.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 GntR PF00392.16 gi|159041818|ref|YP_001541070.1| - 0.035 13.5 0.4 0.075 12.4 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF134 PF02001.11 gi|159041818|ref|YP_001541070.1| - 0.036 13.9 0.2 0.27 11.1 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function DUF134 TetR_N PF00440.18 gi|159041818|ref|YP_001541070.1| - 0.037 13.6 0.1 0.079 12.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_ISL3 PF13542.1 gi|159041818|ref|YP_001541070.1| - 0.039 13.1 0.0 0.076 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 LacI PF00356.16 gi|159041818|ref|YP_001541070.1| - 0.058 13.0 0.2 0.096 12.3 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family IF2_N PF04760.10 gi|159041818|ref|YP_001541070.1| - 0.07 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_1 PF00126.22 gi|159041818|ref|YP_001541070.1| - 0.084 12.6 0.4 0.15 11.8 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Ftsk_gamma PF09397.5 gi|159041818|ref|YP_001541070.1| - 0.096 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Ftsk gamma domain HTH_34 PF13601.1 gi|159041818|ref|YP_001541070.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Zn_ribbon_recom PF13408.1 gi|159041818|ref|YP_001541070.1| - 0.47 10.7 10.2 0.094 12.9 4.0 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain SecY PF00344.15 gi|159041819|ref|YP_001541071.1| - 9.7e-75 251.6 32.6 1.3e-74 251.2 22.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|159041819|ref|YP_001541071.1| - 3.7e-08 32.7 0.8 3.7e-08 32.7 0.6 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Vma12 PF11712.3 gi|159041819|ref|YP_001541071.1| - 2.5 7.8 7.2 0.41 10.3 0.2 2.9 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase ATP_bind_3 PF01171.15 gi|159041820|ref|YP_001541072.1| - 1.8e-10 40.6 0.0 3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|159041820|ref|YP_001541072.1| - 0.00013 21.8 0.0 0.00028 20.7 0.0 1.6 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|159041820|ref|YP_001541072.1| - 0.00088 17.9 0.0 0.0012 17.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|159041820|ref|YP_001541072.1| - 0.0013 18.3 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_SAD PF07973.9 gi|159041822|ref|YP_001541074.1| - 5.2e-11 42.2 0.2 1.2e-10 41.1 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|159041822|ref|YP_001541074.1| - 1.1e-08 33.8 0.3 1.5e-08 33.3 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) AA_permease_2 PF13520.1 gi|159041823|ref|YP_001541075.1| - 2.5e-39 135.0 52.0 2.5e-39 135.0 36.0 2.4 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|159041823|ref|YP_001541075.1| - 4.5e-18 64.8 51.0 4.5e-18 64.8 35.3 2.1 1 1 1 2 2 2 1 Amino acid permease DeoC PF01791.4 gi|159041824|ref|YP_001541076.1| - 5.3e-37 127.3 0.0 6.3e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PFK PF00365.15 gi|159041825|ref|YP_001541077.1| - 4.8e-71 239.0 0.9 6.5e-71 238.5 0.6 1.2 1 0 0 1 1 1 1 Phosphofructokinase QueC PF06508.8 gi|159041826|ref|YP_001541078.1| - 1.4e-53 181.3 0.0 1.9e-53 180.9 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|159041826|ref|YP_001541078.1| - 1.7e-13 50.3 0.0 3.4e-13 49.4 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|159041826|ref|YP_001541078.1| - 2.9e-11 43.4 0.0 1.3e-10 41.3 0.0 1.9 1 1 1 2 2 2 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|159041826|ref|YP_001541078.1| - 4.3e-06 26.3 0.0 1.2e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|159041826|ref|YP_001541078.1| - 2.2e-05 23.2 0.0 8.3e-05 21.3 0.0 2.0 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|159041826|ref|YP_001541078.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Arf PF00025.16 gi|159041827|ref|YP_001541079.1| - 3.9e-13 48.9 0.0 5.2e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|159041827|ref|YP_001541079.1| - 4.4e-13 49.3 0.4 6.9e-08 32.3 0.0 2.2 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|159041827|ref|YP_001541079.1| - 1.4e-11 44.8 0.0 2e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|159041827|ref|YP_001541079.1| - 2.6e-07 30.1 0.0 3.1e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Ras family SRPRB PF09439.5 gi|159041827|ref|YP_001541079.1| - 3.4e-07 29.6 0.0 5.8e-07 28.8 0.0 1.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_24 PF13479.1 gi|159041827|ref|YP_001541079.1| - 5.4e-05 22.8 1.0 0.00025 20.7 0.2 2.0 1 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|159041827|ref|YP_001541079.1| - 0.00043 20.2 0.1 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|159041827|ref|YP_001541079.1| - 0.0013 18.3 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 Septin PF00735.13 gi|159041827|ref|YP_001541079.1| - 0.0044 16.0 0.8 0.024 13.6 0.0 2.0 2 0 0 2 2 2 1 Septin GTP_EFTU PF00009.22 gi|159041827|ref|YP_001541079.1| - 0.0071 15.7 0.4 0.092 12.1 0.3 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.22 gi|159041827|ref|YP_001541079.1| - 0.012 15.8 0.1 0.024 14.9 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Gtr1_RagA PF04670.7 gi|159041827|ref|YP_001541079.1| - 0.013 14.6 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region NTPase_1 PF03266.10 gi|159041827|ref|YP_001541079.1| - 0.015 15.0 0.8 0.056 13.1 0.4 2.0 1 1 1 2 2 2 0 NTPase AAA_17 PF13207.1 gi|159041827|ref|YP_001541079.1| - 0.027 15.2 0.4 0.086 13.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|159041827|ref|YP_001541079.1| - 0.03 14.3 1.0 0.1 12.5 0.9 1.7 2 1 0 2 2 1 0 AAA domain cobW PF02492.14 gi|159041827|ref|YP_001541079.1| - 0.053 12.9 0.1 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|159041827|ref|YP_001541079.1| - 0.064 13.4 0.5 0.63 10.2 0.3 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|159041827|ref|YP_001541079.1| - 0.083 13.2 0.1 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|159041827|ref|YP_001541079.1| - 0.092 11.6 0.2 0.15 10.9 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|159041827|ref|YP_001541079.1| - 0.11 11.6 0.0 0.57 9.3 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|159041827|ref|YP_001541079.1| - 0.12 12.5 0.1 0.29 11.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|159041827|ref|YP_001541079.1| - 0.12 12.0 0.1 1 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Pox_A32 PF04665.7 gi|159041827|ref|YP_001541079.1| - 0.12 11.5 0.3 0.76 9.0 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_33 PF13671.1 gi|159041827|ref|YP_001541079.1| - 0.15 11.9 0.4 0.32 10.8 0.3 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|159041827|ref|YP_001541079.1| - 0.15 11.2 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|159041827|ref|YP_001541079.1| - 0.24 11.2 0.3 0.24 11.2 0.2 2.3 1 1 1 2 2 2 0 Part of AAA domain Cullin PF00888.17 gi|159041828|ref|YP_001541080.1| - 0.011 14.3 0.1 0.013 14.1 0.1 1.0 1 0 0 1 1 1 0 Cullin family Peptidase_A4 PF01828.12 gi|159041830|ref|YP_001541082.1| - 5.7e-27 94.1 2.4 6.3e-27 93.9 1.7 1.1 1 0 0 1 1 1 1 Peptidase A4 family Spore_YtrH PF14034.1 gi|159041831|ref|YP_001541083.1| - 0.043 13.7 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Sporulation protein YtrH TauE PF01925.14 gi|159041831|ref|YP_001541083.1| - 0.051 13.0 0.0 0.057 12.8 0.0 1.0 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF3623 PF12291.3 gi|159041832|ref|YP_001541084.1| - 0.18 10.7 2.4 0.2 10.5 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3623) Rieske PF00355.21 gi|159041835|ref|YP_001541087.1| - 3.2e-12 45.8 0.0 4.1e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|159041835|ref|YP_001541087.1| - 1.3e-05 24.8 0.0 1.7e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Herpes_IE1 PF07340.6 gi|159041835|ref|YP_001541087.1| - 0.12 10.7 0.1 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Cytomegalovirus IE1 protein G_glu_transpept PF01019.16 gi|159041836|ref|YP_001541088.1| - 8.5e-115 384.1 0.0 1.2e-114 383.6 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase DoxX PF07681.7 gi|159041837|ref|YP_001541089.1| - 5.9e-16 58.6 10.9 2.9e-15 56.4 5.1 2.2 1 1 1 2 2 2 1 DoxX DoxX_2 PF13564.1 gi|159041837|ref|YP_001541089.1| - 2.2e-06 27.5 2.0 2.2e-06 27.5 1.4 1.7 1 1 1 2 2 2 1 DoxX-like family DoxD PF04173.8 gi|159041837|ref|YP_001541089.1| - 0.019 14.6 9.2 0.19 11.4 6.1 2.3 1 1 0 1 1 1 0 TQO small subunit DoxD HxlR PF01638.12 gi|159041838|ref|YP_001541090.1| - 1.6e-18 66.1 0.0 1.9e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|159041838|ref|YP_001541090.1| - 2.8e-05 23.8 0.0 3.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|159041838|ref|YP_001541090.1| - 0.0013 18.3 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|159041838|ref|YP_001541090.1| - 0.0032 17.5 0.0 0.0065 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.1 gi|159041838|ref|YP_001541090.1| - 0.0054 16.3 0.0 0.0066 16.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF505 PF04458.7 gi|159041838|ref|YP_001541090.1| - 0.008 14.3 0.0 0.0096 14.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_45 PF14947.1 gi|159041838|ref|YP_001541090.1| - 0.0097 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix PaaX PF07848.7 gi|159041838|ref|YP_001541090.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.1 gi|159041838|ref|YP_001541090.1| - 0.024 14.4 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|159041838|ref|YP_001541090.1| - 0.037 13.4 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family S10_plectin PF03501.10 gi|159041838|ref|YP_001541090.1| - 0.045 13.5 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain RP-C PF03428.8 gi|159041838|ref|YP_001541090.1| - 0.047 13.1 0.0 0.061 12.7 0.0 1.1 1 0 0 1 1 1 0 Replication protein C N-terminal domain DsrD PF08679.6 gi|159041838|ref|YP_001541090.1| - 0.05 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) PadR PF03551.9 gi|159041838|ref|YP_001541090.1| - 0.05 13.3 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|159041838|ref|YP_001541090.1| - 0.059 13.0 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain SBP_bac_5 PF00496.17 gi|159041839|ref|YP_001541091.1| - 1.7e-33 115.9 13.1 2.9e-33 115.2 9.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041839|ref|YP_001541091.1| - 0.0069 16.0 6.5 0.0069 16.0 4.5 1.4 2 0 0 2 2 2 1 Rifin/stevor family FtsX PF02687.16 gi|159041839|ref|YP_001541091.1| - 1.6 8.5 12.8 2.1 8.1 4.4 2.7 2 0 0 2 2 2 0 FtsX-like permease family DUF608 PF04685.8 gi|159041841|ref|YP_001541093.1| - 1.6e-80 270.5 0.0 2.1e-80 270.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|159041841|ref|YP_001541093.1| - 5.3e-60 203.1 0.0 7.1e-60 202.6 0.0 1.2 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal Bac_rhamnosid PF05592.6 gi|159041841|ref|YP_001541093.1| - 0.00021 19.6 0.0 0.00034 18.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Glyco_hydro_52 PF03512.8 gi|159041841|ref|YP_001541093.1| - 0.0058 15.2 0.0 0.011 14.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 52 GDE_C PF06202.9 gi|159041841|ref|YP_001541093.1| - 0.05 12.3 0.0 0.51 9.0 0.0 2.1 2 0 0 2 2 2 0 Amylo-alpha-1,6-glucosidase Ribosomal_L2_C PF03947.13 gi|159041843|ref|YP_001541095.1| - 4.6e-37 126.7 3.0 7.8e-37 125.9 2.1 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|159041843|ref|YP_001541095.1| - 1.1e-07 31.7 0.0 2.3e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Tautomerase PF01361.16 gi|159041843|ref|YP_001541095.1| - 0.075 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Tautomerase enzyme Oxidored_q1 PF00361.15 gi|159041844|ref|YP_001541096.1| - 6.1e-23 81.4 30.7 6.1e-23 81.4 21.3 2.3 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|159041845|ref|YP_001541097.1| - 4.4e-36 124.5 25.3 4.2e-34 118.0 14.9 4.8 5 1 0 5 5 5 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|159041845|ref|YP_001541097.1| - 0.008 15.7 8.5 0.008 15.7 5.9 3.6 2 1 1 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|159041846|ref|YP_001541098.1| - 4.8e-38 130.9 30.5 4.8e-38 130.9 21.1 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q2 PF00420.19 gi|159041847|ref|YP_001541099.1| - 4.4e-09 35.8 11.3 5.1e-09 35.6 7.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF998 PF06197.8 gi|159041847|ref|YP_001541099.1| - 0.038 13.2 6.8 0.047 12.9 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) Lig_chan PF00060.21 gi|159041847|ref|YP_001541099.1| - 2.6 7.7 5.0 0.39 10.4 0.5 1.6 2 1 0 2 2 2 0 Ligand-gated ion channel Herpes_LMP1 PF05297.6 gi|159041847|ref|YP_001541099.1| - 4 6.2 6.9 4.4 6.1 4.8 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) BCLP PF12304.3 gi|159041847|ref|YP_001541099.1| - 7.6 5.9 10.1 18 4.6 6.3 1.8 1 1 1 2 2 2 0 Beta-casein like protein Oxidored_q3 PF00499.15 gi|159041848|ref|YP_001541100.1| - 2.1e-05 24.3 22.3 2.9e-05 23.8 15.4 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF1212 PF06738.7 gi|159041848|ref|YP_001541100.1| - 4.2 6.7 11.8 29 4.0 8.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) Nop PF01798.13 gi|159041849|ref|YP_001541101.1| - 1.1e-47 161.0 0.4 4.6e-47 159.0 0.2 2.0 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|159041849|ref|YP_001541101.1| - 6.8e-21 73.8 0.0 2.5e-20 72.0 0.0 2.0 1 0 0 1 1 1 1 NOSIC (NUC001) domain Ipi1_N PF12333.3 gi|159041849|ref|YP_001541101.1| - 0.021 14.8 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation HHH_5 PF14520.1 gi|159041849|ref|YP_001541101.1| - 0.099 12.8 0.9 1.5 9.0 0.6 2.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain PAP2 PF01569.16 gi|159041850|ref|YP_001541102.1| - 1.6e-18 66.6 7.2 1.8e-18 66.4 3.1 2.0 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|159041850|ref|YP_001541102.1| - 0.0017 17.8 1.0 0.0017 17.8 0.7 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|159041850|ref|YP_001541102.1| - 0.014 15.6 0.9 0.014 15.6 0.7 2.5 3 0 0 3 3 3 0 PAP2 superfamily C-terminal Zn_Tnp_IS1595 PF12760.2 gi|159041851|ref|YP_001541103.1| - 0.00034 20.3 0.8 0.00063 19.5 0.6 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain HypA PF01155.14 gi|159041851|ref|YP_001541103.1| - 0.048 13.3 0.5 0.12 12.0 0.1 1.9 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|159041851|ref|YP_001541103.1| - 0.07 12.7 1.3 8.7 6.0 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041851|ref|YP_001541103.1| - 0.075 12.7 1.2 11 5.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|159041851|ref|YP_001541103.1| - 0.096 12.3 1.1 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.1 gi|159041851|ref|YP_001541103.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2752 PF10825.3 gi|159041851|ref|YP_001541103.1| - 0.49 10.4 4.8 1.1 9.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) EamA PF00892.15 gi|159041852|ref|YP_001541104.1| - 0.0022 18.0 34.1 0.012 15.5 8.3 3.2 1 1 1 2 2 2 2 EamA-like transporter family DUF1427 PF07235.6 gi|159041853|ref|YP_001541105.1| - 0.0025 17.8 0.1 0.0059 16.6 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) ABC_membrane PF00664.18 gi|159041853|ref|YP_001541105.1| - 0.0047 16.3 10.7 0.11 11.9 7.4 2.1 1 1 0 1 1 1 1 ABC transporter transmembrane region Glyco_hydro_38 PF01074.17 gi|159041854|ref|YP_001541106.1| - 2.1e-69 233.8 0.1 3.3e-69 233.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|159041854|ref|YP_001541106.1| - 8.1e-68 229.2 0.0 1.1e-67 228.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|159041854|ref|YP_001541106.1| - 2e-20 72.7 0.1 4.2e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase, middle domain Glyco_hydro_57 PF03065.10 gi|159041854|ref|YP_001541106.1| - 0.00029 19.8 0.1 0.00082 18.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 57 Rhamnogal_lyase PF06045.6 gi|159041854|ref|YP_001541106.1| - 0.14 11.3 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Rhamnogalacturonate lyase family AAA_18 PF13238.1 gi|159041855|ref|YP_001541107.1| - 1.3e-10 41.6 0.0 2.3e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|159041855|ref|YP_001541107.1| - 1.2e-06 29.3 0.2 1.3e-06 29.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain Glyco_hydro_7 PF00840.15 gi|159041855|ref|YP_001541107.1| - 0.067 11.5 0.0 0.095 11.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 7 AAA_28 PF13521.1 gi|159041855|ref|YP_001541107.1| - 0.13 12.1 0.2 0.32 10.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|159041856|ref|YP_001541108.1| - 9.8e-62 208.0 0.0 1.1e-61 207.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|159041856|ref|YP_001541108.1| - 1.9e-07 30.6 0.0 3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|159041856|ref|YP_001541108.1| - 0.0008 17.8 0.2 0.0035 15.7 0.1 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|159041856|ref|YP_001541108.1| - 0.0039 16.3 0.2 0.047 12.7 0.0 2.0 2 0 0 2 2 2 1 recA bacterial DNA recombination protein ATP-synt_ab PF00006.20 gi|159041856|ref|YP_001541108.1| - 0.074 12.5 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|159041856|ref|YP_001541108.1| - 0.089 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|159041856|ref|YP_001541108.1| - 0.13 11.6 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.24 gi|159041856|ref|YP_001541108.1| - 0.17 11.3 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|159041856|ref|YP_001541108.1| - 0.18 11.9 0.4 0.58 10.3 0.3 1.9 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.6 gi|159041856|ref|YP_001541108.1| - 0.26 10.1 0.5 0.95 8.2 0.5 1.7 2 0 0 2 2 2 0 PAXNEB protein MFS_1 PF07690.11 gi|159041857|ref|YP_001541109.1| - 5.4e-35 120.7 73.2 1.8e-23 82.8 33.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|159041857|ref|YP_001541109.1| - 4.2e-05 23.2 10.0 0.0062 16.3 0.0 4.1 4 1 0 4 4 4 2 MFS_1 like family Lig_chan PF00060.21 gi|159041857|ref|YP_001541109.1| - 0.16 11.6 6.3 4.9 6.8 1.3 2.4 2 0 0 2 2 2 0 Ligand-gated ion channel DUF4337 PF14235.1 gi|159041857|ref|YP_001541109.1| - 0.32 10.8 1.5 1.1 9.0 1.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Macro PF01661.16 gi|159041858|ref|YP_001541110.1| - 2.2e-36 124.3 0.0 3e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Macro domain CBS PF00571.23 gi|159041859|ref|YP_001541111.1| - 1.1e-54 181.8 8.4 3.3e-18 65.1 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|159041859|ref|YP_001541111.1| - 1.6e-06 28.4 4.1 2.7e-06 27.7 2.3 1.7 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein LeuA_dimer PF08502.5 gi|159041859|ref|YP_001541111.1| - 0.017 14.9 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain SMC_Nse1 PF07574.8 gi|159041859|ref|YP_001541111.1| - 0.019 14.6 0.3 0.038 13.6 0.2 1.4 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex PRC PF05239.11 gi|159041859|ref|YP_001541111.1| - 0.2 11.5 7.3 2.6 7.9 0.0 4.0 3 1 2 5 5 5 0 PRC-barrel domain CPSase_sm_chain PF00988.17 gi|159041860|ref|YP_001541112.1| - 3.6e-51 172.0 0.0 5.2e-51 171.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|159041860|ref|YP_001541112.1| - 2.4e-35 121.7 0.0 3.3e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|159041860|ref|YP_001541112.1| - 3.1e-09 36.6 0.1 7.1e-07 28.8 0.0 2.5 1 1 1 2 2 2 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|159041861|ref|YP_001541113.1| - 1.6e-92 308.5 0.0 2.2e-61 206.8 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|159041861|ref|YP_001541113.1| - 2.2e-28 98.5 0.1 1.5e-16 60.4 0.1 2.8 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|159041861|ref|YP_001541113.1| - 4.4e-28 98.2 0.0 1.1e-13 51.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|159041861|ref|YP_001541113.1| - 6.4e-21 74.4 0.0 7.7e-07 28.1 0.0 3.9 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|159041861|ref|YP_001541113.1| - 2.4e-20 72.5 0.0 6.6e-20 71.1 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|159041861|ref|YP_001541113.1| - 1.5e-14 53.7 0.0 2.8e-08 33.3 0.0 2.7 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|159041861|ref|YP_001541113.1| - 9.6e-11 41.4 0.1 0.00021 20.7 0.1 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|159041861|ref|YP_001541113.1| - 3.3e-10 39.7 0.1 0.0011 18.4 0.0 4.6 4 1 0 4 4 4 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159041861|ref|YP_001541113.1| - 5e-10 39.4 0.7 2.7e-05 24.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain MerR_1 PF13411.1 gi|159041861|ref|YP_001541113.1| - 0.0002 21.0 0.0 0.034 13.9 0.0 3.4 3 0 0 3 3 3 1 MerR HTH family regulatory protein ETF PF01012.16 gi|159041861|ref|YP_001541113.1| - 0.012 15.3 0.0 0.1 12.3 0.0 2.5 2 0 0 2 2 2 0 Electron transfer flavoprotein domain ATP-grasp_5 PF13549.1 gi|159041861|ref|YP_001541113.1| - 0.021 14.0 0.0 0.18 11.0 0.0 2.4 2 1 0 2 2 2 0 ATP-grasp domain RimK PF08443.6 gi|159041862|ref|YP_001541114.1| - 2.5e-35 121.6 0.0 2.5e-34 118.4 0.0 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|159041862|ref|YP_001541114.1| - 8.6e-11 41.2 0.0 1.7e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159041862|ref|YP_001541114.1| - 3.6e-08 33.4 0.0 6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041862|ref|YP_001541114.1| - 1.2e-07 31.6 0.0 1.9e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|159041862|ref|YP_001541114.1| - 0.0046 16.3 0.0 0.016 14.5 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus DUF4343 PF14243.1 gi|159041862|ref|YP_001541114.1| - 0.068 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4343) RimK PF08443.6 gi|159041863|ref|YP_001541115.1| - 5.8e-47 159.6 0.0 9.4e-47 158.9 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|159041863|ref|YP_001541115.1| - 1.1e-09 38.3 0.0 1.5e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|159041863|ref|YP_001541115.1| - 8e-09 35.5 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|159041863|ref|YP_001541115.1| - 4.8e-07 29.0 0.0 7.3e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|159041863|ref|YP_001541115.1| - 0.0016 17.2 0.0 0.016 14.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon HypA PF01155.14 gi|159041864|ref|YP_001541116.1| - 1.6e-05 24.5 0.8 2.2e-05 24.1 0.6 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|159041864|ref|YP_001541116.1| - 2.2e-05 24.2 0.6 3.9e-05 23.4 0.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|159041864|ref|YP_001541116.1| - 3.6e-05 23.2 2.2 0.18 11.4 0.0 2.7 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159041864|ref|YP_001541116.1| - 7.6e-05 22.3 1.8 0.27 10.9 0.0 2.7 3 0 0 3 3 3 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|159041864|ref|YP_001541116.1| - 0.00027 20.6 2.8 0.00097 18.8 0.8 2.2 2 1 0 2 2 2 1 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|159041864|ref|YP_001541116.1| - 0.0011 18.2 4.4 0.0011 18.2 3.0 1.9 2 1 0 2 2 1 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|159041864|ref|YP_001541116.1| - 0.011 15.2 0.3 1.6 8.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|159041864|ref|YP_001541116.1| - 0.016 14.6 0.5 0.99 8.8 0.1 2.3 2 0 0 2 2 2 0 HypF finger DZR PF12773.2 gi|159041864|ref|YP_001541116.1| - 0.021 14.6 2.4 0.05 13.4 1.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.4 gi|159041864|ref|YP_001541116.1| - 0.021 14.7 0.4 0.032 14.1 0.3 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Elf1 PF05129.8 gi|159041864|ref|YP_001541116.1| - 0.034 13.8 4.4 5.7 6.7 0.1 2.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-CSL PF05207.8 gi|159041864|ref|YP_001541116.1| - 0.051 13.0 0.2 0.051 13.0 0.1 1.9 2 0 0 2 2 2 0 CSL zinc finger PhnA_Zn_Ribbon PF08274.7 gi|159041864|ref|YP_001541116.1| - 0.057 13.2 0.0 0.19 11.5 0.0 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-C2H2_3 PF13878.1 gi|159041864|ref|YP_001541116.1| - 0.058 12.9 6.4 0.18 11.3 0.1 2.6 2 1 1 3 3 3 0 zinc-finger of acetyl-transferase ESCO zf-IS66 PF13005.2 gi|159041864|ref|YP_001541116.1| - 0.068 13.1 0.4 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2256 PF10013.4 gi|159041864|ref|YP_001541116.1| - 0.069 12.9 3.7 2.8 7.7 0.0 2.9 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Cys_rich_KTR PF14205.1 gi|159041864|ref|YP_001541116.1| - 0.079 12.4 0.0 0.079 12.4 0.0 2.2 4 0 0 4 4 2 0 Cysteine-rich KTR zf-CHY PF05495.7 gi|159041864|ref|YP_001541116.1| - 0.094 12.8 2.4 0.77 9.9 1.6 2.0 1 1 0 1 1 1 0 CHY zinc finger zf-ISL3 PF14690.1 gi|159041864|ref|YP_001541116.1| - 0.11 12.5 0.6 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ADK_lid PF05191.9 gi|159041864|ref|YP_001541116.1| - 0.11 12.1 1.0 4.8 6.9 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-CHCC PF10276.4 gi|159041864|ref|YP_001541116.1| - 0.12 12.2 0.2 15 5.5 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger domain UPF0547 PF10571.4 gi|159041864|ref|YP_001541116.1| - 0.13 11.9 1.1 13 5.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|159041864|ref|YP_001541116.1| - 0.17 12.3 1.2 14 6.2 0.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type FYVE PF01363.16 gi|159041864|ref|YP_001541116.1| - 0.17 11.8 2.6 15 5.5 0.0 2.5 1 1 1 2 2 2 0 FYVE zinc finger CpXC PF14353.1 gi|159041864|ref|YP_001541116.1| - 0.19 11.7 2.5 3.6 7.5 0.0 2.3 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.1 gi|159041864|ref|YP_001541116.1| - 0.23 10.7 4.3 1.2 8.4 3.2 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.1 gi|159041864|ref|YP_001541116.1| - 0.51 9.9 4.4 6 6.5 0.2 2.9 3 0 0 3 3 3 0 Probable zinc-binding domain zf-C3HC4_3 PF13920.1 gi|159041864|ref|YP_001541116.1| - 0.68 9.6 5.0 7.2 6.3 3.5 2.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-Sec23_Sec24 PF04810.10 gi|159041864|ref|YP_001541116.1| - 0.84 9.2 3.7 1.4 8.5 0.0 2.5 2 1 1 3 3 3 0 Sec23/Sec24 zinc finger Lar_restr_allev PF14354.1 gi|159041864|ref|YP_001541116.1| - 1.1 9.5 4.5 1.8 8.9 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar IBR PF01485.16 gi|159041864|ref|YP_001541116.1| - 1.3 8.9 4.1 15 5.5 1.4 2.5 2 1 0 2 2 2 0 IBR domain zf-BED PF02892.10 gi|159041864|ref|YP_001541116.1| - 1.3 8.8 4.8 0.99 9.2 0.2 2.6 1 1 2 3 3 3 0 BED zinc finger zf-HIT PF04438.11 gi|159041864|ref|YP_001541116.1| - 1.7 8.3 10.3 9.6 5.9 0.9 3.1 3 0 0 3 3 3 0 HIT zinc finger zf-met2 PF12907.2 gi|159041864|ref|YP_001541116.1| - 1.8 8.5 8.7 20 5.2 0.4 3.2 3 0 0 3 3 3 0 Zinc-binding zf-C2H2_6 PF13912.1 gi|159041864|ref|YP_001541116.1| - 3.3 7.7 6.0 5.5 7.0 0.1 2.9 3 0 0 3 3 3 0 C2H2-type zinc finger AA_kinase PF00696.23 gi|159041865|ref|YP_001541117.1| - 6.9e-30 104.3 4.2 7.9e-30 104.1 2.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|159041866|ref|YP_001541118.1| - 6.5e-31 107.1 0.0 1.1e-30 106.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|159041866|ref|YP_001541118.1| - 4e-14 52.8 0.0 8.1e-14 51.8 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DUF2192 PF09958.4 gi|159041867|ref|YP_001541119.1| - 2.3e-67 226.5 3.5 2.8e-67 226.3 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) DEAD PF00270.24 gi|159041868|ref|YP_001541120.1| - 2e-21 76.2 0.0 3.8e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|159041868|ref|YP_001541120.1| - 3.7e-14 52.3 0.0 8.7e-14 51.1 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|159041868|ref|YP_001541120.1| - 8.9e-14 51.8 0.0 1.9e-13 50.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) SecA_DEAD PF07517.9 gi|159041868|ref|YP_001541120.1| - 1.8e-05 24.2 0.0 3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_19 PF13245.1 gi|159041868|ref|YP_001541120.1| - 0.013 15.2 0.2 0.049 13.3 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain ResIII PF04851.10 gi|159041868|ref|YP_001541120.1| - 0.013 15.2 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Flavi_DEAD PF07652.9 gi|159041868|ref|YP_001541120.1| - 0.042 13.5 0.4 0.27 10.9 0.0 2.6 3 0 0 3 3 3 0 Flavivirus DEAD domain HemN_C PF06969.11 gi|159041868|ref|YP_001541120.1| - 0.066 13.2 0.1 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain SNF2_N PF00176.18 gi|159041868|ref|YP_001541120.1| - 0.19 10.5 0.0 0.31 9.7 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain ADH_N PF08240.7 gi|159041869|ref|YP_001541121.1| - 1.4e-15 57.0 1.0 2.5e-15 56.1 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159041869|ref|YP_001541121.1| - 1.1e-06 28.1 0.1 5.5e-06 25.9 0.1 2.2 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Choline_kin_N PF04428.9 gi|159041869|ref|YP_001541121.1| - 0.023 14.1 0.0 0.058 12.8 0.0 1.6 1 0 0 1 1 1 0 Choline kinase N terminus Shikimate_DH PF01488.15 gi|159041869|ref|YP_001541121.1| - 0.072 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NPHI_C PF08469.5 gi|159041870|ref|YP_001541122.1| - 0.031 14.1 1.4 0.37 10.6 0.1 2.1 1 1 1 2 2 2 0 Nucleoside triphosphatase I C-terminal NOG1 PF06858.9 gi|159041871|ref|YP_001541123.1| - 1.6e-19 69.4 0.5 2.8e-19 68.7 0.3 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|159041871|ref|YP_001541123.1| - 4.4e-17 62.1 0.0 8e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|159041871|ref|YP_001541123.1| - 1.2e-14 53.9 0.0 1.9e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|159041871|ref|YP_001541123.1| - 3.2e-07 29.9 0.0 1.1e-05 24.9 0.0 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|159041871|ref|YP_001541123.1| - 3.4e-05 23.3 0.2 0.0022 17.4 0.1 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|159041871|ref|YP_001541123.1| - 0.00014 21.1 1.0 0.00027 20.2 0.1 1.9 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|159041871|ref|YP_001541123.1| - 0.00015 22.2 0.0 0.00027 21.3 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|159041871|ref|YP_001541123.1| - 0.00025 20.4 0.1 0.0011 18.3 0.0 1.9 1 1 0 1 1 1 1 Ras family cobW PF02492.14 gi|159041871|ref|YP_001541123.1| - 0.0023 17.3 0.1 0.017 14.5 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Septin PF00735.13 gi|159041871|ref|YP_001541123.1| - 0.0061 15.5 0.4 0.019 13.9 0.1 1.9 1 1 1 2 2 2 1 Septin AIG1 PF04548.11 gi|159041871|ref|YP_001541123.1| - 0.021 13.9 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_16 PF13191.1 gi|159041871|ref|YP_001541123.1| - 0.03 14.2 0.4 0.17 11.8 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain Arf PF00025.16 gi|159041871|ref|YP_001541123.1| - 0.056 12.6 0.1 0.5 9.5 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family ChAPs PF09295.5 gi|159041871|ref|YP_001541123.1| - 0.063 12.0 0.3 0.96 8.1 0.1 2.0 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) AAA_22 PF13401.1 gi|159041871|ref|YP_001541123.1| - 0.12 12.5 0.1 0.6 10.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain Proteasome PF00227.21 gi|159041872|ref|YP_001541124.1| - 4.4e-49 166.3 0.5 5.5e-49 166.0 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit PBCV_basic_adap PF08789.5 gi|159041872|ref|YP_001541124.1| - 0.026 14.1 0.1 0.053 13.1 0.1 1.5 1 0 0 1 1 1 0 PBCV-specific basic adaptor domain TatD_DNase PF01026.16 gi|159041873|ref|YP_001541125.1| - 3.8e-49 167.1 0.0 4.4e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase TRM PF02005.11 gi|159041874|ref|YP_001541126.1| - 7.3e-77 258.8 0.0 9e-77 258.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|159041874|ref|YP_001541126.1| - 1.6e-08 34.3 0.0 2.4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|159041874|ref|YP_001541126.1| - 3.9e-07 29.4 0.5 5.8e-07 28.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|159041874|ref|YP_001541126.1| - 7.5e-07 29.1 0.0 1.4e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159041874|ref|YP_001541126.1| - 8.9e-06 25.1 0.0 1.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|159041874|ref|YP_001541126.1| - 8e-05 22.2 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|159041874|ref|YP_001541126.1| - 0.00035 20.1 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF633 PF04816.7 gi|159041874|ref|YP_001541126.1| - 0.00041 19.7 0.0 0.00064 19.1 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF633) UPF0020 PF01170.13 gi|159041874|ref|YP_001541126.1| - 0.0008 19.0 0.3 0.0018 17.8 0.2 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|159041874|ref|YP_001541126.1| - 0.0018 18.8 0.0 0.0031 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|159041874|ref|YP_001541126.1| - 0.016 14.6 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_3 PF01596.12 gi|159041874|ref|YP_001541126.1| - 0.025 13.6 0.0 0.038 13.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MethyltransfD12 PF02086.10 gi|159041874|ref|YP_001541126.1| - 0.026 13.9 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase tRNA_U5-meth_tr PF05958.6 gi|159041874|ref|YP_001541126.1| - 0.16 10.6 0.1 0.21 10.2 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Fibrillarin PF01269.12 gi|159041875|ref|YP_001541127.1| - 6.7e-97 322.9 0.0 7.5e-97 322.7 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|159041875|ref|YP_001541127.1| - 1.2e-05 24.9 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|159041875|ref|YP_001541127.1| - 0.15 11.5 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Glyco_hydro_3 PF00933.16 gi|159041876|ref|YP_001541128.1| - 3.9e-94 314.9 0.0 5.4e-94 314.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|159041876|ref|YP_001541128.1| - 3.8e-49 167.2 0.0 1.5e-48 165.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|159041876|ref|YP_001541128.1| - 4e-25 87.5 0.0 9.6e-25 86.3 0.0 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain DUF123 PF01986.11 gi|159041877|ref|YP_001541129.1| - 2.5e-24 85.2 0.1 3.6e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 TP_methylase PF00590.15 gi|159041878|ref|YP_001541130.1| - 1.2e-44 152.5 0.2 1.3e-44 152.4 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SBP_bac_5 PF00496.17 gi|159041879|ref|YP_001541131.1| - 1e-33 116.7 11.8 1.9e-33 115.8 8.2 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041879|ref|YP_001541131.1| - 0.027 14.1 13.4 0.04 13.5 9.3 1.2 1 0 0 1 1 1 0 Rifin/stevor family Aminotran_1_2 PF00155.16 gi|159041880|ref|YP_001541132.1| - 0.0024 16.8 0.0 0.0028 16.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.16 gi|159041881|ref|YP_001541133.1| - 1.7e-16 60.8 0.0 4.7e-16 59.4 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|159041881|ref|YP_001541133.1| - 0.00017 21.4 0.0 0.00077 19.3 0.0 2.1 2 1 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|159041882|ref|YP_001541134.1| - 5.8e-21 75.3 0.0 2e-20 73.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|159041882|ref|YP_001541134.1| - 4.3e-08 33.0 1.0 1.4e-07 31.4 0.1 2.4 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|159041882|ref|YP_001541134.1| - 0.00011 22.2 0.1 0.0008 19.5 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|159041882|ref|YP_001541134.1| - 0.058 13.5 0.1 0.14 12.2 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain RNase_P_p30 PF01876.11 gi|159041883|ref|YP_001541135.1| - 4.1e-05 22.8 0.0 5.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 RNase P subunit p30 NTP_transf_2 PF01909.18 gi|159041884|ref|YP_001541136.1| - 3.8e-08 33.5 0.0 4.5e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|159041884|ref|YP_001541136.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|159041885|ref|YP_001541137.1| - 3.5e-30 104.3 0.3 4e-30 104.1 0.2 1.0 1 0 0 1 1 1 1 HEPN domain DrsE_2 PF13686.1 gi|159041886|ref|YP_001541138.1| - 7.7e-09 35.4 0.1 4.4e-07 29.8 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|159041886|ref|YP_001541138.1| - 2.8e-08 33.8 0.0 3.1e-08 33.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Rho_RNA_bind PF07497.7 gi|159041886|ref|YP_001541138.1| - 0.08 12.5 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Rho termination factor, RNA-binding domain BPD_transp_1 PF00528.17 gi|159041887|ref|YP_001541139.1| - 1.9e-43 148.1 12.8 1.9e-43 148.1 8.9 2.7 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|159041888|ref|YP_001541140.1| - 7.7e-28 97.2 12.3 7.7e-28 97.2 8.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.3 gi|159041888|ref|YP_001541140.1| - 0.56 9.3 6.5 1.3 8.1 4.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) bPH_2 PF03703.9 gi|159041889|ref|YP_001541141.1| - 7.8e-08 32.2 0.1 1.3e-07 31.5 0.1 1.4 1 1 0 1 1 1 1 Bacterial PH domain ABC_tran PF00005.22 gi|159041890|ref|YP_001541142.1| - 4.5e-33 114.4 0.0 6.3e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|159041890|ref|YP_001541142.1| - 6.5e-21 74.4 0.1 1.3e-20 73.5 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|159041890|ref|YP_001541142.1| - 5.6e-11 42.9 0.5 1.3e-06 28.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|159041890|ref|YP_001541142.1| - 1.5e-05 25.1 0.5 0.00011 22.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159041890|ref|YP_001541142.1| - 2.7e-05 23.4 0.4 0.00036 19.8 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|159041890|ref|YP_001541142.1| - 0.00016 21.1 0.1 0.00028 20.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|159041890|ref|YP_001541142.1| - 0.00067 19.6 0.3 0.0013 18.7 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|159041890|ref|YP_001541142.1| - 0.0011 17.5 1.1 0.47 8.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|159041890|ref|YP_001541142.1| - 0.0017 18.2 0.1 0.01 15.7 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|159041890|ref|YP_001541142.1| - 0.0023 18.2 0.0 0.0062 16.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|159041890|ref|YP_001541142.1| - 0.0032 16.5 0.1 1.3 7.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain Mg_chelatase PF01078.16 gi|159041890|ref|YP_001541142.1| - 0.021 13.9 0.0 0.049 12.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|159041890|ref|YP_001541142.1| - 0.036 14.2 0.1 0.62 10.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|159041890|ref|YP_001541142.1| - 0.04 13.3 0.0 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|159041890|ref|YP_001541142.1| - 0.047 13.0 0.0 3.3 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|159041890|ref|YP_001541142.1| - 0.056 12.6 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|159041890|ref|YP_001541142.1| - 0.062 13.0 0.2 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|159041890|ref|YP_001541142.1| - 0.11 12.3 0.2 0.35 10.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|159041890|ref|YP_001541142.1| - 0.31 10.7 1.8 0.72 9.4 1.3 1.9 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|159041891|ref|YP_001541143.1| - 2.7e-27 95.7 0.0 3.7e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|159041891|ref|YP_001541143.1| - 6.6e-21 74.4 0.1 1.1e-20 73.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|159041891|ref|YP_001541143.1| - 8e-14 52.2 0.9 2.2e-09 37.6 0.1 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159041891|ref|YP_001541143.1| - 1.6e-06 27.5 0.1 1.1e-05 24.8 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|159041891|ref|YP_001541143.1| - 1.6e-06 27.5 0.0 2.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|159041891|ref|YP_001541143.1| - 9.8e-06 25.7 0.3 0.00025 21.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|159041891|ref|YP_001541143.1| - 8.5e-05 21.7 0.0 0.0036 16.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|159041891|ref|YP_001541143.1| - 0.00022 21.2 0.1 0.00035 20.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|159041891|ref|YP_001541143.1| - 0.00044 19.7 0.1 0.0065 15.8 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|159041891|ref|YP_001541143.1| - 0.0011 18.4 0.2 0.046 13.1 0.1 2.3 1 1 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|159041891|ref|YP_001541143.1| - 0.0032 17.7 0.2 0.0094 16.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|159041891|ref|YP_001541143.1| - 0.0047 16.1 0.0 0.0089 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|159041891|ref|YP_001541143.1| - 0.0052 16.2 0.1 0.017 14.5 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|159041891|ref|YP_001541143.1| - 0.0063 17.3 0.1 0.013 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|159041891|ref|YP_001541143.1| - 0.007 15.1 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus NACHT PF05729.7 gi|159041891|ref|YP_001541143.1| - 0.04 13.5 0.0 0.08 12.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|159041891|ref|YP_001541143.1| - 0.041 13.0 0.1 0.14 11.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|159041891|ref|YP_001541143.1| - 0.048 13.9 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|159041891|ref|YP_001541143.1| - 0.059 13.1 0.1 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_5 PF07728.9 gi|159041891|ref|YP_001541143.1| - 0.069 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|159041891|ref|YP_001541143.1| - 0.072 13.2 0.0 1.8 8.7 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|159041891|ref|YP_001541143.1| - 0.076 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|159041891|ref|YP_001541143.1| - 0.09 11.8 0.2 0.19 10.8 0.0 1.5 2 0 0 2 2 1 0 KaiC FtsK_SpoIIIE PF01580.13 gi|159041891|ref|YP_001541143.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|159041891|ref|YP_001541143.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain CbiA PF01656.18 gi|159041891|ref|YP_001541143.1| - 0.16 11.3 0.2 1.6 8.1 0.0 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.17 gi|159041891|ref|YP_001541143.1| - 0.18 10.6 0.0 0.32 9.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SBP_bac_5 PF00496.17 gi|159041892|ref|YP_001541144.1| - 4.9e-56 190.1 5.8 4.9e-56 190.1 4.0 2.6 3 0 0 3 3 3 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.12 gi|159041892|ref|YP_001541144.1| - 0.0013 18.4 38.4 0.0013 18.4 26.6 2.8 3 0 0 3 3 3 1 Mucin-like glycoprotein Ribosomal_L14 PF00238.14 gi|159041894|ref|YP_001541146.1| - 2.7e-37 127.2 1.0 3.1e-37 127.0 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Formyl_trans_C PF02911.13 gi|159041894|ref|YP_001541146.1| - 0.01 15.9 0.1 0.014 15.4 0.1 1.2 1 0 0 1 1 1 0 Formyl transferase, C-terminal domain PAS_3 PF08447.6 gi|159041894|ref|YP_001541146.1| - 0.04 14.0 0.2 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 PAS fold NAD_kinase PF01513.16 gi|159041895|ref|YP_001541147.1| - 3.1e-25 88.5 1.1 4.3e-25 88.0 0.8 1.1 1 0 0 1 1 1 1 ATP-NAD kinase TrmB PF01978.14 gi|159041895|ref|YP_001541147.1| - 1.5e-05 24.5 0.1 4.2e-05 23.1 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|159041895|ref|YP_001541147.1| - 2.3e-05 23.9 0.3 0.00011 21.8 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|159041895|ref|YP_001541147.1| - 0.00016 21.2 0.0 0.00064 19.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|159041895|ref|YP_001541147.1| - 0.0025 18.0 0.1 0.0066 16.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|159041895|ref|YP_001541147.1| - 0.0031 16.8 1.8 0.004 16.5 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|159041895|ref|YP_001541147.1| - 0.0033 17.1 0.1 0.0077 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|159041895|ref|YP_001541147.1| - 0.014 15.0 0.1 0.049 13.3 0.0 2.0 3 0 0 3 3 3 0 MarR family HTH_9 PF08221.6 gi|159041895|ref|YP_001541147.1| - 0.017 14.9 0.0 0.051 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2250 PF10007.4 gi|159041895|ref|YP_001541147.1| - 0.098 12.5 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Phosphorylase PF00343.15 gi|159041896|ref|YP_001541148.1| - 2.6e-11 42.1 0.0 2.2e-10 39.1 0.0 2.2 1 1 1 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|159041896|ref|YP_001541148.1| - 2.7e-07 30.1 0.0 5.5e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|159041896|ref|YP_001541148.1| - 4.4e-07 29.6 0.0 1.8e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|159041896|ref|YP_001541148.1| - 0.0044 17.1 0.0 0.013 15.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 RrnaAD PF00398.15 gi|159041898|ref|YP_001541150.1| - 1.3e-39 135.8 0.0 1.6e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0146 PF03686.8 gi|159041898|ref|YP_001541150.1| - 0.00017 21.4 0.0 0.00037 20.3 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_26 PF13659.1 gi|159041898|ref|YP_001541150.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041898|ref|YP_001541150.1| - 0.014 15.9 0.0 0.02 15.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|159041898|ref|YP_001541150.1| - 0.015 15.7 0.0 0.03 14.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|159041898|ref|YP_001541150.1| - 0.026 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|159041898|ref|YP_001541150.1| - 0.044 13.3 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|159041898|ref|YP_001541150.1| - 0.056 13.1 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|159041898|ref|YP_001541150.1| - 0.074 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|159041898|ref|YP_001541150.1| - 0.078 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HD_3 PF13023.1 gi|159041899|ref|YP_001541151.1| - 3.8e-14 52.7 0.0 3.2e-13 49.7 0.0 2.0 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|159041899|ref|YP_001541151.1| - 3.6e-08 33.4 0.1 7.7e-08 32.3 0.1 1.6 1 1 0 1 1 1 1 HD domain DUF3336 PF11815.3 gi|159041899|ref|YP_001541151.1| - 0.0033 16.9 0.0 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3336) HDOD PF08668.7 gi|159041899|ref|YP_001541151.1| - 0.025 13.8 0.0 0.042 13.1 0.0 1.3 1 0 0 1 1 1 0 HDOD domain Isochorismatase PF00857.15 gi|159041900|ref|YP_001541152.1| - 2.8e-43 147.8 0.0 3.4e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family CoA_binding_3 PF13727.1 gi|159041901|ref|YP_001541153.1| - 0.23 11.2 4.5 0.36 10.6 3.1 1.3 1 0 0 1 1 1 0 CoA-binding domain DUF2626 PF11117.3 gi|159041901|ref|YP_001541153.1| - 2.2 8.7 6.4 3.9 7.9 1.4 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2626) ABC_tran PF00005.22 gi|159041902|ref|YP_001541154.1| - 9.5e-42 142.5 0.5 1.5e-19 70.6 0.1 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|159041902|ref|YP_001541154.1| - 4.8e-23 82.5 6.1 3e-06 27.4 0.1 4.2 2 2 1 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|159041902|ref|YP_001541154.1| - 1e-09 37.7 3.5 0.00072 19.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|159041902|ref|YP_001541154.1| - 3.3e-09 36.9 3.7 0.0048 17.0 1.6 3.2 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|159041902|ref|YP_001541154.1| - 1.2e-08 34.7 1.1 0.09 12.2 0.0 3.5 4 0 0 4 4 3 3 AAA-like domain AAA_23 PF13476.1 gi|159041902|ref|YP_001541154.1| - 2.4e-08 34.5 3.2 0.0029 17.9 0.3 2.4 2 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159041902|ref|YP_001541154.1| - 3e-08 33.1 11.5 0.033 13.3 0.2 4.1 3 1 1 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|159041902|ref|YP_001541154.1| - 4.8e-07 29.9 6.0 0.0063 16.5 1.8 3.1 2 2 0 2 2 2 2 AAA ATPase domain T2SE PF00437.15 gi|159041902|ref|YP_001541154.1| - 5.7e-07 28.7 1.2 0.016 14.0 0.1 2.5 2 1 0 2 2 2 2 Type II/IV secretion system protein Miro PF08477.8 gi|159041902|ref|YP_001541154.1| - 6e-06 26.7 0.4 0.072 13.5 0.2 2.5 2 0 0 2 2 2 2 Miro-like protein AAA_25 PF13481.1 gi|159041902|ref|YP_001541154.1| - 1.4e-05 24.6 4.7 0.022 14.1 1.4 3.3 2 2 1 3 3 3 2 AAA domain MMR_HSR1 PF01926.18 gi|159041902|ref|YP_001541154.1| - 1.6e-05 24.8 1.1 0.07 13.0 0.0 2.8 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|159041902|ref|YP_001541154.1| - 1.8e-05 23.9 0.7 0.27 10.2 0.0 3.3 4 0 0 4 4 4 2 AAA ATPase domain AAA_30 PF13604.1 gi|159041902|ref|YP_001541154.1| - 2.2e-05 24.1 2.0 0.088 12.3 0.0 3.1 3 1 0 3 3 2 2 AAA domain AAA PF00004.24 gi|159041902|ref|YP_001541154.1| - 2.6e-05 24.4 3.4 0.18 12.0 0.1 3.4 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|159041902|ref|YP_001541154.1| - 6.2e-05 22.2 1.6 0.14 11.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|159041902|ref|YP_001541154.1| - 6.5e-05 22.8 1.9 0.18 11.7 0.0 3.1 3 0 0 3 3 3 1 AAA domain Dynamin_N PF00350.18 gi|159041902|ref|YP_001541154.1| - 8.7e-05 22.3 1.2 0.081 12.7 0.1 2.4 2 1 0 2 2 2 2 Dynamin family NACHT PF05729.7 gi|159041902|ref|YP_001541154.1| - 0.00011 21.9 1.7 0.21 11.2 0.2 2.8 2 1 0 2 2 2 2 NACHT domain FtsK_SpoIIIE PF01580.13 gi|159041902|ref|YP_001541154.1| - 0.00011 21.7 1.3 0.03 13.8 0.0 2.6 3 0 0 3 3 2 1 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|159041902|ref|YP_001541154.1| - 0.00012 22.3 2.2 0.44 10.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|159041902|ref|YP_001541154.1| - 0.0002 22.1 7.1 0.044 14.6 0.3 3.1 2 2 1 3 3 2 2 AAA domain PduV-EutP PF10662.4 gi|159041902|ref|YP_001541154.1| - 0.00024 20.6 1.5 0.3 10.5 0.2 2.9 3 0 0 3 3 2 2 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|159041902|ref|YP_001541154.1| - 0.00025 20.8 1.0 0.77 9.4 0.0 3.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|159041902|ref|YP_001541154.1| - 0.00064 19.4 7.7 0.13 11.9 0.1 2.9 3 0 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|159041902|ref|YP_001541154.1| - 0.00085 18.8 0.0 4.3 6.7 0.0 3.2 3 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|159041902|ref|YP_001541154.1| - 0.00096 18.8 2.7 0.26 11.0 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain ATP_bind_1 PF03029.12 gi|159041902|ref|YP_001541154.1| - 0.0011 18.5 0.7 0.27 10.7 0.4 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein SbcCD_C PF13558.1 gi|159041902|ref|YP_001541154.1| - 0.0011 18.8 0.0 0.67 9.9 0.0 2.7 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|159041902|ref|YP_001541154.1| - 0.0022 17.1 0.5 0.57 9.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI G-alpha PF00503.15 gi|159041902|ref|YP_001541154.1| - 0.0027 16.4 0.1 0.075 11.7 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit Adeno_IVa2 PF02456.10 gi|159041902|ref|YP_001541154.1| - 0.004 15.8 0.1 2.1 6.9 0.0 2.3 2 0 0 2 2 2 2 Adenovirus IVa2 protein AAA_28 PF13521.1 gi|159041902|ref|YP_001541154.1| - 0.0068 16.3 1.7 2.4 8.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|159041902|ref|YP_001541154.1| - 0.0095 15.0 1.5 3 6.8 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin UPF0079 PF02367.12 gi|159041902|ref|YP_001541154.1| - 0.013 15.1 3.8 0.034 13.7 0.9 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|159041902|ref|YP_001541154.1| - 0.014 15.5 0.3 5.4 7.2 0.0 2.8 2 0 0 2 2 2 0 RNA helicase Arch_ATPase PF01637.13 gi|159041902|ref|YP_001541154.1| - 0.031 13.9 2.2 2.1 8.0 0.1 2.8 2 1 0 2 2 2 0 Archaeal ATPase NTPase_1 PF03266.10 gi|159041902|ref|YP_001541154.1| - 0.033 13.8 8.2 3.1 7.4 0.1 3.9 4 1 1 5 5 5 0 NTPase GTP_EFTU PF00009.22 gi|159041902|ref|YP_001541154.1| - 0.04 13.3 1.1 4.2 6.7 0.7 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF815 PF05673.8 gi|159041902|ref|YP_001541154.1| - 0.046 12.6 1.6 5.3 5.8 0.3 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF815) AAA_13 PF13166.1 gi|159041902|ref|YP_001541154.1| - 0.058 11.8 3.9 1 7.7 0.0 3.5 4 1 0 4 4 4 0 AAA domain PIF1 PF05970.9 gi|159041902|ref|YP_001541154.1| - 0.064 12.2 0.6 7.3 5.4 0.0 2.4 2 0 0 2 2 2 0 PIF1-like helicase Pox_A32 PF04665.7 gi|159041902|ref|YP_001541154.1| - 0.066 12.4 3.9 8.9 5.5 0.0 3.1 3 0 0 3 3 3 0 Poxvirus A32 protein SRPRB PF09439.5 gi|159041902|ref|YP_001541154.1| - 0.07 12.3 0.5 3.4 6.8 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit cobW PF02492.14 gi|159041902|ref|YP_001541154.1| - 0.089 12.2 5.6 2.2 7.7 0.9 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|159041902|ref|YP_001541154.1| - 0.11 11.8 0.0 0.55 9.6 0.0 2.0 2 0 0 2 2 2 0 MutS domain V Sigma54_activ_2 PF14532.1 gi|159041902|ref|YP_001541154.1| - 0.11 12.4 0.1 9.2 6.3 0.0 2.9 3 0 0 3 3 2 0 Sigma-54 interaction domain PhoH PF02562.11 gi|159041902|ref|YP_001541154.1| - 0.12 11.5 1.3 11 5.1 0.3 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_14 PF13173.1 gi|159041902|ref|YP_001541154.1| - 0.12 12.2 4.1 3.9 7.3 0.0 3.6 3 1 0 4 4 3 0 AAA domain DLIC PF05783.6 gi|159041902|ref|YP_001541154.1| - 0.15 10.6 0.4 1.1 7.8 0.1 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) TrwB_AAD_bind PF10412.4 gi|159041902|ref|YP_001541154.1| - 0.25 9.9 1.2 14 4.1 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.1 gi|159041902|ref|YP_001541154.1| - 0.28 10.7 3.1 4.9 6.6 0.5 2.4 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|159041902|ref|YP_001541154.1| - 0.65 9.3 7.2 28 4.0 0.1 3.9 4 0 0 4 4 4 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|159041902|ref|YP_001541154.1| - 0.71 9.6 6.9 1.4 8.6 1.1 2.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|159041902|ref|YP_001541154.1| - 0.88 8.3 3.1 15 4.3 0.4 2.3 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.17 gi|159041902|ref|YP_001541154.1| - 1.9 7.8 5.8 14 5.0 0.0 2.9 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain DUF3816 PF12822.2 gi|159041903|ref|YP_001541155.1| - 6.4e-08 32.6 18.7 8.5e-08 32.2 13.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) ECF-ribofla_trS PF07155.7 gi|159041903|ref|YP_001541155.1| - 0.018 14.7 17.0 0.13 11.9 11.8 2.0 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component CbiM PF01891.11 gi|159041903|ref|YP_001541155.1| - 0.31 10.6 18.0 3 7.3 12.4 2.4 1 1 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region Nucleos_tra2_N PF01773.15 gi|159041903|ref|YP_001541155.1| - 2.1 8.7 5.4 15 5.9 1.3 2.4 2 0 0 2 2 2 0 Na+ dependent nucleoside transporter N-terminus NTP_transferase PF00483.18 gi|159041905|ref|YP_001541157.1| - 4.1e-19 68.8 0.0 5.6e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|159041905|ref|YP_001541157.1| - 3.2e-06 27.3 0.0 4.7e-06 26.7 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain DNA_pol_B PF00136.16 gi|159041906|ref|YP_001541158.1| - 4e-90 302.8 0.3 5.5e-90 302.3 0.2 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|159041906|ref|YP_001541158.1| - 1.5e-39 135.8 0.1 2.7e-39 134.9 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|159041906|ref|YP_001541158.1| - 2e-12 47.0 0.0 3.8e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|159041906|ref|YP_001541158.1| - 1.4e-11 44.5 0.0 3.3e-11 43.2 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily Sulfate_tra_GLY PF13792.1 gi|159041906|ref|YP_001541158.1| - 0.2 11.3 0.0 0.97 9.1 0.0 2.1 3 0 0 3 3 3 0 Sulfate transporter N-terminal domain with GLY motif Thioredoxin_3 PF13192.1 gi|159041907|ref|YP_001541159.1| - 2.8e-16 59.0 0.3 1.2e-11 44.2 0.2 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.15 gi|159041907|ref|YP_001541159.1| - 7.5e-09 35.2 0.0 1.6e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Glutaredoxin PF00462.19 gi|159041907|ref|YP_001541159.1| - 5.1e-05 23.1 1.1 0.027 14.4 0.3 3.2 3 0 0 3 3 3 2 Glutaredoxin Thioredoxin_2 PF13098.1 gi|159041907|ref|YP_001541159.1| - 0.0031 17.6 1.3 0.16 12.1 0.9 2.6 2 1 0 2 2 2 1 Thioredoxin-like domain TrbC_Ftype PF09673.5 gi|159041907|ref|YP_001541159.1| - 0.14 11.7 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.6 gi|159041907|ref|YP_001541159.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.1 gi|159041907|ref|YP_001541159.1| - 0.48 10.4 1.9 17 5.3 0.2 3.0 2 1 1 3 3 3 0 Thioredoxin PDT PF00800.13 gi|159041908|ref|YP_001541160.1| - 1.2e-44 151.9 0.0 1.6e-44 151.5 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|159041908|ref|YP_001541160.1| - 5.5e-06 25.7 0.0 1.4e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 ACT domain MCC-bdg_PDZ PF10506.4 gi|159041908|ref|YP_001541160.1| - 0.068 13.0 0.2 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome FaeA PF04703.7 gi|159041909|ref|YP_001541161.1| - 5.3e-08 32.9 0.1 6.7e-08 32.5 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein MarR_2 PF12802.2 gi|159041909|ref|YP_001541161.1| - 4.8e-06 26.1 0.1 7e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|159041909|ref|YP_001541161.1| - 6.7e-06 25.4 0.4 9.8e-06 24.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|159041909|ref|YP_001541161.1| - 0.00032 20.2 0.0 0.00046 19.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.5 gi|159041909|ref|YP_001541161.1| - 0.0013 18.3 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF977 PF06163.6 gi|159041909|ref|YP_001541161.1| - 0.0024 17.5 0.2 0.0024 17.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_27 PF13463.1 gi|159041909|ref|YP_001541161.1| - 0.0038 17.4 0.1 0.0054 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|159041909|ref|YP_001541161.1| - 0.004 16.8 0.0 0.0067 16.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|159041909|ref|YP_001541161.1| - 0.0045 16.4 0.2 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|159041909|ref|YP_001541161.1| - 0.0061 16.0 0.5 2.9 7.5 0.0 2.2 1 1 1 2 2 2 2 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|159041909|ref|YP_001541161.1| - 0.0069 16.1 0.0 0.0095 15.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|159041909|ref|YP_001541161.1| - 0.0069 16.2 0.0 0.0099 15.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.12 gi|159041909|ref|YP_001541161.1| - 0.0072 15.8 0.1 0.0091 15.4 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_45 PF14947.1 gi|159041909|ref|YP_001541161.1| - 0.0085 15.8 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|159041909|ref|YP_001541161.1| - 0.011 15.3 0.1 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.11 gi|159041909|ref|YP_001541161.1| - 0.019 15.0 0.0 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor B-block_TFIIIC PF04182.7 gi|159041909|ref|YP_001541161.1| - 0.034 13.9 0.1 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RNA_pol_Rpc34 PF05158.7 gi|159041909|ref|YP_001541161.1| - 0.036 13.2 0.0 0.036 13.2 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_11 PF08279.7 gi|159041909|ref|YP_001541161.1| - 0.065 12.8 0.3 0.1 12.2 0.2 1.4 1 1 0 1 1 1 0 HTH domain HTH_Mga PF08280.6 gi|159041909|ref|YP_001541161.1| - 0.087 12.5 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.15 gi|159041909|ref|YP_001541161.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family z-alpha PF02295.12 gi|159041909|ref|YP_001541161.1| - 0.12 12.1 0.1 0.19 11.4 0.0 1.5 1 1 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF1900 PF08954.6 gi|159041910|ref|YP_001541162.1| - 0.0035 16.8 0.2 0.85 9.1 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1900) FlgD_ig PF13860.1 gi|159041910|ref|YP_001541162.1| - 0.18 11.5 0.8 18 5.1 0.0 4.0 5 0 0 5 5 5 0 FlgD Ig-like domain Radical_SAM PF04055.16 gi|159041911|ref|YP_001541163.1| - 3.7e-26 92.2 0.0 1e-25 90.8 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|159041911|ref|YP_001541163.1| - 1.2e-10 41.4 0.0 5.3e-10 39.3 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|159041911|ref|YP_001541163.1| - 4e-09 36.7 0.0 9e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|159041911|ref|YP_001541163.1| - 1.1e-07 32.1 0.2 3.3e-07 30.5 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AP_endonuc_2 PF01261.19 gi|159041911|ref|YP_001541163.1| - 1.4e-05 24.5 0.0 0.00023 20.5 0.0 2.3 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|159041911|ref|YP_001541163.1| - 0.0058 15.7 0.0 1.2 8.1 0.0 2.1 2 0 0 2 2 2 2 Glycoside hydrolase 97 CCG PF02754.11 gi|159041912|ref|YP_001541164.1| - 2.6e-24 85.0 0.0 3.9e-12 45.9 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|159041912|ref|YP_001541164.1| - 1.2e-11 44.4 2.7 2.8e-11 43.2 0.8 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041912|ref|YP_001541164.1| - 6.5e-08 32.8 9.0 8.2e-07 29.2 2.6 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159041912|ref|YP_001541164.1| - 4.3e-07 30.2 1.2 0.093 13.1 0.3 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159041912|ref|YP_001541164.1| - 3.2e-06 26.8 5.4 1.4e-05 24.8 3.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041912|ref|YP_001541164.1| - 2.8e-05 24.2 6.3 2.8e-05 24.2 4.4 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159041912|ref|YP_001541164.1| - 0.00022 20.9 16.4 0.003 17.3 1.8 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159041912|ref|YP_001541164.1| - 0.00074 19.8 12.3 0.0028 18.0 6.6 2.9 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159041912|ref|YP_001541164.1| - 0.011 15.3 20.5 0.038 13.6 0.9 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041912|ref|YP_001541164.1| - 0.019 14.8 14.7 0.39 10.6 2.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|159041912|ref|YP_001541164.1| - 0.02 15.2 5.9 0.11 12.9 0.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159041912|ref|YP_001541164.1| - 0.12 12.2 5.1 0.42 10.5 0.1 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159041912|ref|YP_001541164.1| - 0.13 13.0 8.7 0.18 12.5 4.6 2.3 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|159041912|ref|YP_001541164.1| - 0.21 12.1 7.1 3.2 8.3 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|159041912|ref|YP_001541164.1| - 0.37 11.4 23.7 0.18 12.4 4.2 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain DUF4231 PF14015.1 gi|159041912|ref|YP_001541164.1| - 2.8 7.9 5.4 0.76 9.7 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) MazG PF03819.12 gi|159041913|ref|YP_001541165.1| - 2.3e-11 43.4 0.5 2.3e-11 43.4 0.3 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|159041913|ref|YP_001541165.1| - 0.0011 19.2 0.3 0.0012 19.0 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Methyltransf_24 PF13578.1 gi|159041914|ref|YP_001541166.1| - 3.1e-13 50.4 0.0 4.5e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|159041914|ref|YP_001541166.1| - 4.1e-05 22.7 0.0 5.6e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase CmcI PF04989.7 gi|159041914|ref|YP_001541166.1| - 0.00015 21.1 0.1 0.00033 20.0 0.1 1.5 1 1 0 1 1 1 1 Cephalosporin hydroxylase KdgT PF03812.8 gi|159041914|ref|YP_001541166.1| - 0.091 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 2-keto-3-deoxygluconate permease Glycos_transf_2 PF00535.21 gi|159041915|ref|YP_001541167.1| - 2.6e-23 82.5 0.0 4.8e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159041915|ref|YP_001541167.1| - 3.6e-22 79.2 0.0 5.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|159041915|ref|YP_001541167.1| - 3.4e-15 56.2 0.3 3.4e-15 56.2 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|159041915|ref|YP_001541167.1| - 2.4e-09 36.7 0.0 4.3e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|159041915|ref|YP_001541167.1| - 2.6e-06 26.7 0.0 3.1e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF3566 PF12089.3 gi|159041916|ref|YP_001541168.1| - 0.32 11.0 7.5 2.4 8.1 5.2 2.0 1 1 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) Gemini_mov PF01708.11 gi|159041916|ref|YP_001541168.1| - 0.53 9.8 3.0 1.5 8.4 0.1 2.2 2 0 0 2 2 2 0 Geminivirus putative movement protein COX14 PF14880.1 gi|159041916|ref|YP_001541168.1| - 0.82 9.3 6.6 4.4 7.0 0.1 2.2 2 0 0 2 2 2 0 Cytochrome oxidase c assembly DUF1206 PF06724.6 gi|159041916|ref|YP_001541168.1| - 2.8 7.7 8.0 8.4 6.2 0.5 3.0 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1206) Abi PF02517.11 gi|159041916|ref|YP_001541168.1| - 3.6 7.7 7.2 7.2 6.8 5.0 1.6 1 1 0 1 1 1 0 CAAX protease self-immunity PrgI PF12666.2 gi|159041916|ref|YP_001541168.1| - 7.2 6.8 7.0 11 6.2 0.2 2.1 2 0 0 2 2 2 0 PrgI family protein 5-FTHF_cyc-lig PF01812.15 gi|159041917|ref|YP_001541169.1| - 9.7e-30 103.7 0.0 1.2e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF1874 PF08960.5 gi|159041918|ref|YP_001541170.1| - 3.3e-10 39.6 0.1 3.7e-10 39.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1874) NADH5_C PF06455.6 gi|159041918|ref|YP_001541170.1| - 0.12 11.7 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 NADH dehydrogenase subunit 5 C-terminus Fer2_3 PF13085.1 gi|159041919|ref|YP_001541171.1| - 1.9e-34 117.7 0.4 4.3e-34 116.6 0.0 1.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|159041919|ref|YP_001541171.1| - 5.8e-12 45.4 1.3 5.8e-12 45.4 0.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159041919|ref|YP_001541171.1| - 2.3e-11 43.8 8.1 4e-09 36.7 0.9 2.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|159041919|ref|YP_001541171.1| - 1.8e-10 41.0 4.9 3.8e-07 30.4 0.1 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|159041919|ref|YP_001541171.1| - 7.2e-09 35.7 4.2 1.4e-08 34.8 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159041919|ref|YP_001541171.1| - 4.3e-08 33.4 2.4 1.2e-07 32.0 0.4 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|159041919|ref|YP_001541171.1| - 1.6e-06 27.7 0.1 1.6e-06 27.7 0.1 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.1 gi|159041919|ref|YP_001541171.1| - 1.9e-06 27.5 4.2 1.9e-06 27.5 2.9 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159041919|ref|YP_001541171.1| - 6e-05 22.4 1.3 6e-05 22.4 0.9 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|159041919|ref|YP_001541171.1| - 0.00099 18.8 2.4 0.00099 18.8 1.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|159041919|ref|YP_001541171.1| - 0.0012 18.6 1.9 0.0012 18.6 1.3 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159041919|ref|YP_001541171.1| - 0.0014 19.3 4.5 0.0014 19.3 3.1 2.7 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|159041919|ref|YP_001541171.1| - 0.002 18.4 1.3 0.002 18.4 0.9 2.7 3 0 0 3 3 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|159041919|ref|YP_001541171.1| - 0.0087 16.3 3.0 0.0087 16.3 2.1 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2_4 PF13510.1 gi|159041919|ref|YP_001541171.1| - 0.031 14.0 0.5 0.055 13.2 0.1 1.6 2 0 0 2 2 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.1 gi|159041919|ref|YP_001541171.1| - 0.052 13.3 0.9 0.052 13.3 0.6 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159041919|ref|YP_001541171.1| - 0.099 13.2 0.1 0.099 13.2 0.1 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|159041919|ref|YP_001541171.1| - 0.36 11.5 21.2 0.17 12.5 2.8 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|159041920|ref|YP_001541172.1| - 1.5e-28 99.0 1.4 1.9e-28 98.7 1.0 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Gemini_mov PF01708.11 gi|159041920|ref|YP_001541172.1| - 0.19 11.2 1.5 0.22 11.1 0.1 1.8 2 0 0 2 2 2 0 Geminivirus putative movement protein Sdh_cyt PF01127.17 gi|159041921|ref|YP_001541173.1| - 3.3e-08 33.3 12.6 4.8e-08 32.8 8.7 1.3 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YfhO PF09586.5 gi|159041921|ref|YP_001541173.1| - 0.094 10.7 3.9 0.14 10.1 2.7 1.3 1 0 0 1 1 1 0 Bacterial membrane protein YfhO PIG-P PF08510.7 gi|159041921|ref|YP_001541173.1| - 0.098 12.2 2.5 0.17 11.5 1.7 1.4 1 0 0 1 1 1 0 PIG-P UPF0233 PF06781.7 gi|159041921|ref|YP_001541173.1| - 1.2 8.8 10.0 2.6 7.7 3.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) PepSY_TM_1 PF13172.1 gi|159041921|ref|YP_001541173.1| - 2.2 8.1 10.8 3.5 7.4 0.2 3.1 3 0 0 3 3 3 0 PepSY-associated TM helix DUF2975 PF11188.3 gi|159041921|ref|YP_001541173.1| - 4.2 7.1 10.4 0.54 9.9 4.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Cytochrom_B_N PF00033.14 gi|159041921|ref|YP_001541173.1| - 9.1 5.5 14.5 1.8e+02 1.3 10.1 2.2 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB EIF_2_alpha PF07541.7 gi|159041923|ref|YP_001541175.1| - 8.7e-26 89.8 0.0 1.8e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|159041923|ref|YP_001541175.1| - 1.5e-11 44.2 0.1 2.7e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain DUF3489 PF11994.3 gi|159041923|ref|YP_001541175.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) GAS PF13851.1 gi|159041923|ref|YP_001541175.1| - 0.093 11.9 0.0 0.17 11.0 0.0 1.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Nop10p PF04135.7 gi|159041924|ref|YP_001541176.1| - 7.8e-24 83.1 1.2 1e-23 82.8 0.9 1.2 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|159041924|ref|YP_001541176.1| - 0.0028 16.8 4.4 0.0071 15.5 3.0 1.7 1 1 0 1 1 1 1 zinc-ribbon domain DUF1272 PF06906.6 gi|159041924|ref|YP_001541176.1| - 0.013 15.3 2.0 0.018 14.8 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-FCS PF06467.9 gi|159041924|ref|YP_001541176.1| - 0.025 14.2 4.8 0.49 10.0 0.2 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Ribosomal_L37e PF01907.14 gi|159041924|ref|YP_001541176.1| - 0.03 14.1 1.6 0.047 13.4 1.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Ribosomal_L32p PF01783.18 gi|159041924|ref|YP_001541176.1| - 0.046 13.8 1.2 0.069 13.3 0.8 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family NOB1_Zn_bind PF08772.6 gi|159041924|ref|YP_001541176.1| - 0.093 12.5 2.7 0.15 11.8 1.9 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|159041924|ref|YP_001541176.1| - 0.1 12.0 5.3 2.3 7.8 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|159041924|ref|YP_001541176.1| - 0.12 12.1 2.3 0.2 11.5 1.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|159041924|ref|YP_001541176.1| - 0.15 11.7 1.4 0.21 11.3 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.8 gi|159041924|ref|YP_001541176.1| - 0.16 11.7 1.5 0.34 10.7 1.1 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C2H2_4 PF13894.1 gi|159041924|ref|YP_001541176.1| - 0.21 11.9 1.5 6.8 7.2 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Fer4 PF00037.22 gi|159041924|ref|YP_001541176.1| - 0.48 10.1 3.0 9.7 5.9 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain zinc_ribbon_4 PF13717.1 gi|159041924|ref|YP_001541176.1| - 0.58 9.9 3.4 2.4 7.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|159041924|ref|YP_001541176.1| - 0.77 9.3 3.5 2.8 7.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|159041924|ref|YP_001541176.1| - 2.5 8.2 8.2 4.8 7.3 0.4 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|159041924|ref|YP_001541176.1| - 4 7.4 7.1 0.42 10.6 0.3 2.4 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|159041924|ref|YP_001541176.1| - 4.3 6.7 5.9 7.8 5.9 0.5 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Ribosomal_L44 PF00935.14 gi|159041925|ref|YP_001541177.1| - 7.4e-27 93.1 8.4 7.4e-27 93.1 5.8 1.3 2 0 0 2 2 1 1 Ribosomal protein L44 RecR PF02132.10 gi|159041925|ref|YP_001541177.1| - 0.0076 15.6 1.8 0.96 8.9 0.2 2.2 2 0 0 2 2 2 2 RecR protein zf-FPG_IleRS PF06827.9 gi|159041925|ref|YP_001541177.1| - 0.046 13.3 0.6 0.046 13.3 0.4 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS RNA_POL_M_15KD PF02150.11 gi|159041925|ref|YP_001541177.1| - 0.09 12.4 1.7 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|159041925|ref|YP_001541177.1| - 0.11 11.7 0.8 11 5.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.11 gi|159041925|ref|YP_001541177.1| - 0.12 12.2 1.7 1.6 8.6 0.2 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger TF_Zn_Ribbon PF08271.7 gi|159041925|ref|YP_001541177.1| - 0.15 11.3 0.8 5.4 6.4 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|159041925|ref|YP_001541177.1| - 0.17 11.6 2.4 0.68 9.7 1.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.1 gi|159041925|ref|YP_001541177.1| - 0.18 11.6 2.1 1.3 8.8 1.6 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|159041925|ref|YP_001541177.1| - 0.27 11.5 1.8 9.2 6.6 1.4 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar Mu-like_Com PF10122.4 gi|159041925|ref|YP_001541177.1| - 0.37 9.8 3.3 0.62 9.1 0.3 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com IBR PF01485.16 gi|159041925|ref|YP_001541177.1| - 0.4 10.5 3.5 0.73 9.7 2.4 1.4 1 1 0 1 1 1 0 IBR domain zf-DNL PF05180.7 gi|159041925|ref|YP_001541177.1| - 0.45 10.2 2.3 2.9 7.6 0.1 2.2 2 0 0 2 2 2 0 DNL zinc finger zinc_ribbon_2 PF13240.1 gi|159041925|ref|YP_001541177.1| - 0.5 9.9 2.3 15 5.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.11 gi|159041925|ref|YP_001541177.1| - 0.58 10.0 3.7 0.97 9.3 2.5 1.4 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1660 PF07874.6 gi|159041925|ref|YP_001541177.1| - 0.75 10.1 2.8 2.1 8.7 0.1 2.1 1 1 1 2 2 2 0 Prophage protein (DUF1660) UPF0547 PF10571.4 gi|159041925|ref|YP_001541177.1| - 2.1 8.1 4.3 17 5.1 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sulfatase PF00884.18 gi|159041927|ref|YP_001541179.1| - 3.5e-39 134.7 0.0 4.7e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|159041927|ref|YP_001541179.1| - 1.6e-07 31.0 0.2 0.00035 19.9 0.1 2.5 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|159041927|ref|YP_001541179.1| - 3.6e-05 22.3 0.0 8.9e-05 21.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Cys_Met_Meta_PP PF01053.15 gi|159041928|ref|YP_001541180.1| - 3.5e-115 384.3 0.0 4e-115 384.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|159041928|ref|YP_001541180.1| - 0.006 15.6 0.0 0.01 14.8 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|159041928|ref|YP_001541180.1| - 0.0088 15.2 0.1 0.048 12.7 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase MFS_1 PF07690.11 gi|159041929|ref|YP_001541181.1| - 4.8e-30 104.4 79.6 7.6e-28 97.2 34.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159041929|ref|YP_001541181.1| - 3.4e-12 45.6 40.5 3.1e-10 39.2 12.1 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter PfkB PF00294.19 gi|159041930|ref|YP_001541182.1| - 1.2e-53 182.2 0.0 1.5e-53 181.9 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_41 PF14502.1 gi|159041930|ref|YP_001541182.1| - 0.12 12.0 0.1 0.53 9.9 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MarC PF01914.12 gi|159041931|ref|YP_001541183.1| - 3.7e-35 120.8 18.1 4.7e-35 120.5 12.5 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein CbiZ PF01955.13 gi|159041932|ref|YP_001541184.1| - 1.6e-47 161.7 0.2 1.9e-47 161.5 0.2 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase MadM PF03818.8 gi|159041932|ref|YP_001541184.1| - 0.047 13.2 0.1 0.14 11.7 0.1 1.8 1 1 0 1 1 1 0 Malonate/sodium symporter MadM subunit HTH_5 PF01022.15 gi|159041933|ref|YP_001541185.1| - 1.5e-09 37.3 0.0 2e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|159041933|ref|YP_001541185.1| - 2.4e-06 27.2 0.0 3.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|159041933|ref|YP_001541185.1| - 0.00018 21.1 0.0 0.00027 20.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|159041933|ref|YP_001541185.1| - 0.0012 18.6 0.0 0.0017 18.1 0.0 1.3 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_38 PF13936.1 gi|159041933|ref|YP_001541185.1| - 0.002 17.6 0.8 0.0037 16.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|159041933|ref|YP_001541185.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|159041933|ref|YP_001541185.1| - 0.013 14.8 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|159041933|ref|YP_001541185.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.7 gi|159041933|ref|YP_001541185.1| - 0.03 13.9 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|159041933|ref|YP_001541185.1| - 0.049 13.2 0.0 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain MarR PF01047.17 gi|159041933|ref|YP_001541185.1| - 0.074 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|159041933|ref|YP_001541185.1| - 0.074 13.0 0.0 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain PaaX PF07848.7 gi|159041933|ref|YP_001541185.1| - 0.083 12.9 0.0 0.83 9.6 0.0 2.2 1 1 1 2 2 2 0 PaaX-like protein HTH_30 PF13556.1 gi|159041933|ref|YP_001541185.1| - 0.15 11.6 0.0 0.34 10.5 0.0 1.6 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain PDDEXK_1 PF12705.2 gi|159041934|ref|YP_001541186.1| - 9.5e-06 25.1 0.0 1.5e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.4 gi|159041934|ref|YP_001541186.1| - 0.022 14.0 0.0 0.12 11.5 0.0 2.1 3 0 0 3 3 3 0 Exonuclease V - a 5' deoxyribonuclease Cas_Cas4 PF01930.12 gi|159041934|ref|YP_001541186.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF83 Glyco_hydro_57 PF03065.10 gi|159041935|ref|YP_001541187.1| - 6.3e-33 114.1 0.1 2.5e-32 112.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Radical_SAM PF04055.16 gi|159041936|ref|YP_001541188.1| - 3.4e-20 72.8 0.0 7.2e-20 71.8 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|159041936|ref|YP_001541188.1| - 8.6e-16 57.8 0.0 1.7e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_14 PF13394.1 gi|159041936|ref|YP_001541188.1| - 0.08 12.9 0.0 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Lactamase_B PF00753.22 gi|159041938|ref|YP_001541190.1| - 9.4e-21 74.3 0.0 1.2e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|159041938|ref|YP_001541190.1| - 0.00036 20.1 0.0 0.00043 19.8 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain APG6 PF04111.7 gi|159041939|ref|YP_001541191.1| - 0.0022 17.1 0.5 0.0033 16.5 0.3 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 DUF342 PF03961.8 gi|159041939|ref|YP_001541191.1| - 0.0086 14.5 0.5 0.016 13.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF342) WEMBL PF05701.6 gi|159041939|ref|YP_001541191.1| - 0.0097 14.4 1.7 0.0097 14.4 1.2 1.7 2 0 0 2 2 2 1 Weak chloroplast movement under blue light ADIP PF11559.3 gi|159041939|ref|YP_001541191.1| - 0.016 15.1 0.4 0.026 14.4 0.3 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Clusterin PF01093.12 gi|159041939|ref|YP_001541191.1| - 0.039 12.7 0.0 0.052 12.3 0.0 1.1 1 0 0 1 1 1 0 Clusterin DUF2205 PF10224.4 gi|159041939|ref|YP_001541191.1| - 0.059 12.9 3.3 0.099 12.2 0.9 2.4 2 1 1 3 3 3 0 Predicted coiled-coil protein (DUF2205) CCDC155 PF14662.1 gi|159041939|ref|YP_001541191.1| - 0.087 12.4 3.5 0.37 10.3 2.4 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Uso1_p115_C PF04871.8 gi|159041939|ref|YP_001541191.1| - 0.11 12.4 1.5 0.21 11.4 1.0 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF972 PF06156.8 gi|159041939|ref|YP_001541191.1| - 0.2 12.0 5.7 0.45 10.8 2.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF972) EzrA PF06160.7 gi|159041939|ref|YP_001541191.1| - 0.31 9.1 7.4 0.25 9.4 2.3 2.3 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF948 PF06103.6 gi|159041939|ref|YP_001541191.1| - 0.35 10.7 4.4 0.76 9.6 0.8 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1019 PF06254.6 gi|159041939|ref|YP_001541191.1| - 0.48 10.6 3.3 5.4 7.2 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1019) bZIP_1 PF00170.16 gi|159041939|ref|YP_001541191.1| - 1 9.3 5.5 9.4 6.2 0.8 2.5 1 1 1 2 2 2 0 bZIP transcription factor TMF_TATA_bd PF12325.3 gi|159041939|ref|YP_001541191.1| - 1.2 8.8 6.6 1.6 8.4 2.5 2.3 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Seryl_tRNA_N PF02403.17 gi|159041939|ref|YP_001541191.1| - 1.4 8.9 8.3 0.5 10.4 2.3 2.4 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DivIC PF04977.10 gi|159041939|ref|YP_001541191.1| - 8.8 5.9 7.6 4.1 6.9 0.7 2.8 2 1 1 3 3 3 0 Septum formation initiator HIT PF01230.18 gi|159041940|ref|YP_001541192.1| - 2e-31 108.3 0.1 8.3e-31 106.4 0.0 1.8 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|159041940|ref|YP_001541192.1| - 1.2e-16 60.9 0.0 1.8e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|159041940|ref|YP_001541192.1| - 0.011 15.3 0.2 0.02 14.5 0.1 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 PCNA_N PF00705.13 gi|159041941|ref|YP_001541193.1| - 3.9e-13 49.0 0.0 2.8e-12 46.2 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|159041941|ref|YP_001541193.1| - 3.1e-10 40.0 0.6 2.7e-08 33.7 0.0 2.9 2 1 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|159041941|ref|YP_001541193.1| - 6.1e-05 21.9 0.0 0.012 14.4 0.0 2.2 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|159041941|ref|YP_001541193.1| - 0.00036 19.7 0.0 0.00062 18.9 0.0 1.3 1 1 0 1 1 1 1 Rad9 PepSY PF03413.14 gi|159041941|ref|YP_001541193.1| - 0.47 11.1 5.2 13 6.5 0.0 3.4 3 1 0 3 3 3 0 Peptidase propeptide and YPEB domain DNA_primase_S PF01896.14 gi|159041942|ref|YP_001541194.1| - 1.4e-21 76.7 0.0 2.1e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit V_ATPase_I PF01496.14 gi|159041944|ref|YP_001541196.1| - 2.2e-29 101.9 16.6 2.3e-21 75.4 0.1 3.4 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family DUF869 PF05911.6 gi|159041944|ref|YP_001541196.1| - 0.00063 18.1 1.1 0.00092 17.5 0.8 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) GAS PF13851.1 gi|159041944|ref|YP_001541196.1| - 0.0016 17.6 7.0 0.16 11.1 0.6 3.0 3 0 0 3 3 3 2 Growth-arrest specific micro-tubule binding Reo_sigmaC PF04582.7 gi|159041944|ref|YP_001541196.1| - 0.0016 17.6 6.5 0.057 12.5 0.0 3.1 2 1 0 3 3 3 1 Reovirus sigma C capsid protein DUF3829 PF12889.2 gi|159041944|ref|YP_001541196.1| - 0.0038 16.4 0.1 0.042 13.0 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF3829) Prefoldin_2 PF01920.15 gi|159041944|ref|YP_001541196.1| - 0.0046 16.7 9.2 0.85 9.4 0.5 3.9 4 0 0 4 4 4 1 Prefoldin subunit DivIVA PF05103.8 gi|159041944|ref|YP_001541196.1| - 0.011 15.7 9.4 2.3 8.2 0.5 3.4 3 1 0 3 3 3 0 DivIVA protein TPR_MLP1_2 PF07926.7 gi|159041944|ref|YP_001541196.1| - 0.039 13.6 4.3 0.14 11.8 2.2 2.4 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Mgr1 PF08602.5 gi|159041944|ref|YP_001541196.1| - 0.044 12.7 0.1 2.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Mgr1-like, i-AAA protease complex subunit CENP-Q PF13094.1 gi|159041944|ref|YP_001541196.1| - 0.06 13.3 6.0 2.3 8.1 0.0 3.1 3 0 0 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit Uds1 PF15456.1 gi|159041944|ref|YP_001541196.1| - 0.092 12.7 6.2 3.5 7.6 0.1 3.4 3 1 0 3 3 3 0 Up-regulated During Septation DUF2408 PF10303.4 gi|159041944|ref|YP_001541196.1| - 0.095 12.8 5.4 0.27 11.3 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2408) Flagellar_rod PF05149.7 gi|159041944|ref|YP_001541196.1| - 0.1 11.8 7.8 0.11 11.6 0.1 3.1 3 0 0 3 3 3 0 Paraflagellar rod protein PspA_IM30 PF04012.7 gi|159041944|ref|YP_001541196.1| - 0.12 11.6 6.5 0.65 9.3 0.3 3.0 3 0 0 3 3 3 0 PspA/IM30 family Seryl_tRNA_N PF02403.17 gi|159041944|ref|YP_001541196.1| - 0.13 12.2 7.7 2.6 8.1 0.3 3.7 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Baculo_PEP_C PF04513.7 gi|159041944|ref|YP_001541196.1| - 0.23 11.2 9.8 2.1 8.1 1.7 3.8 2 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.6 gi|159041944|ref|YP_001541196.1| - 0.23 8.9 2.4 2.5 5.5 0.0 2.5 2 1 1 3 3 3 0 Prominin Med4 PF10018.4 gi|159041944|ref|YP_001541196.1| - 0.27 10.6 6.1 0.44 9.9 0.5 3.1 3 0 0 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4140 PF13600.1 gi|159041944|ref|YP_001541196.1| - 0.3 11.5 7.6 16 6.0 0.2 4.2 3 1 1 4 4 4 0 N-terminal domain of unknown function (DUF4140) DUF4201 PF13870.1 gi|159041944|ref|YP_001541196.1| - 0.32 10.4 5.2 0.68 9.3 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) PhoU PF01895.14 gi|159041944|ref|YP_001541196.1| - 0.6 10.5 8.3 0.69 10.3 0.2 3.2 3 0 0 3 3 2 0 PhoU domain V-SNARE PF05008.10 gi|159041944|ref|YP_001541196.1| - 0.63 10.2 7.9 17 5.6 0.0 4.2 4 0 0 4 4 4 0 Vesicle transport v-SNARE protein N-terminus HR1 PF02185.11 gi|159041944|ref|YP_001541196.1| - 0.65 9.7 14.3 0.99 9.1 0.3 3.8 4 0 0 4 4 4 0 Hr1 repeat Spc24 PF08286.6 gi|159041944|ref|YP_001541196.1| - 0.79 9.4 4.4 3.1 7.5 0.1 3.1 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 COG2 PF06148.6 gi|159041944|ref|YP_001541196.1| - 0.97 9.3 8.8 12 5.7 0.5 3.6 4 0 0 4 4 3 0 COG (conserved oligomeric Golgi) complex component, COG2 TBPIP PF07106.8 gi|159041944|ref|YP_001541196.1| - 1.1 8.7 10.3 1.6 8.2 0.4 3.5 3 1 1 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Tropomyosin PF00261.15 gi|159041944|ref|YP_001541196.1| - 1.2 8.2 9.6 6.8 5.7 0.2 3.1 3 0 0 3 3 3 0 Tropomyosin DUF972 PF06156.8 gi|159041944|ref|YP_001541196.1| - 1.2 9.4 10.2 4.9 7.5 0.3 3.8 3 1 0 4 4 4 0 Protein of unknown function (DUF972) Fib_alpha PF08702.5 gi|159041944|ref|YP_001541196.1| - 1.4 9.0 5.7 33 4.5 0.1 3.3 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|159041944|ref|YP_001541196.1| - 1.8 8.3 6.3 6.5 6.5 0.4 3.3 3 1 1 4 4 3 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|159041944|ref|YP_001541196.1| - 1.9 8.3 12.2 0.25 11.1 1.2 2.8 3 0 0 3 3 2 0 TATA element modulatory factor 1 DNA binding Herpes_U30 PF04523.8 gi|159041944|ref|YP_001541196.1| - 2.4 5.5 4.9 13 3.0 0.0 2.8 2 1 0 3 3 3 0 Herpes virus tegument protein U30 CENP-F_leu_zip PF10473.4 gi|159041944|ref|YP_001541196.1| - 2.6 7.9 15.3 0.055 13.3 1.6 3.6 3 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|159041944|ref|YP_001541196.1| - 2.6 6.6 11.1 1.2 7.7 0.2 3.0 2 1 2 4 4 4 0 Spc7 kinetochore protein DUF2450 PF10475.4 gi|159041944|ref|YP_001541196.1| - 3.2 6.5 6.7 0.51 9.1 0.4 2.4 3 0 0 3 3 3 0 Protein of unknown function N-terminal domain (DUF2450) SlyX PF04102.7 gi|159041944|ref|YP_001541196.1| - 3.3 8.1 4.7 14 6.1 0.1 3.4 4 0 0 4 4 3 0 SlyX Acetyltransf_1 PF00583.19 gi|159041945|ref|YP_001541197.1| - 9.4e-14 51.2 0.0 1.4e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|159041945|ref|YP_001541197.1| - 1.2e-08 35.1 0.0 1.6e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159041945|ref|YP_001541197.1| - 6.3e-08 32.2 0.0 1.1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|159041945|ref|YP_001541197.1| - 1.9e-05 24.7 0.0 3.7e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|159041945|ref|YP_001541197.1| - 0.00021 21.2 0.0 0.0004 20.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|159041945|ref|YP_001541197.1| - 0.00055 19.9 0.0 0.00071 19.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|159041945|ref|YP_001541197.1| - 0.0078 16.1 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|159041945|ref|YP_001541197.1| - 0.084 12.7 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF402 PF04167.8 gi|159041946|ref|YP_001541198.1| - 7.1e-17 61.0 1.5 1.4e-16 60.0 1.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|159041946|ref|YP_001541198.1| - 0.0045 16.2 0.0 0.007 15.6 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family DNA_methylase PF00145.12 gi|159041947|ref|YP_001541199.1| - 6.8e-50 170.0 0.0 3.6e-33 115.0 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|159041947|ref|YP_001541199.1| - 0.016 14.8 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Lipase_GDSL_3 PF14606.1 gi|159041947|ref|YP_001541199.1| - 0.072 12.8 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family FtsX PF02687.16 gi|159041948|ref|YP_001541200.1| - 1.8e-21 76.1 18.8 1.8e-21 76.1 13.0 3.3 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.2 gi|159041948|ref|YP_001541200.1| - 9.7e-18 64.5 3.9 9.7e-18 64.5 2.7 2.5 2 1 1 3 3 3 1 MacB-like periplasmic core domain adh_short PF00106.20 gi|159041949|ref|YP_001541201.1| - 2.5e-35 121.8 0.4 3.8e-35 121.2 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|159041949|ref|YP_001541201.1| - 1.3e-34 120.0 0.2 1.5e-34 119.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|159041949|ref|YP_001541201.1| - 3.1e-14 53.0 0.1 4.5e-14 52.5 0.1 1.1 1 0 0 1 1 1 1 KR domain AdoHcyase_NAD PF00670.16 gi|159041949|ref|YP_001541201.1| - 0.029 14.1 0.8 0.063 13.1 0.6 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|159041949|ref|YP_001541201.1| - 0.078 12.6 3.3 0.07 12.7 0.8 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|159041949|ref|YP_001541201.1| - 0.11 12.9 2.1 0.17 12.3 0.4 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Sipho_tail PF05709.6 gi|159041949|ref|YP_001541201.1| - 0.16 11.0 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Phage tail protein 2-Hacid_dh_C PF02826.14 gi|159041949|ref|YP_001541201.1| - 0.24 10.5 2.4 0.71 8.9 0.5 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_hydro_2_C PF02836.12 gi|159041950|ref|YP_001541202.1| - 4.8e-62 209.5 0.0 6.1e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.13 gi|159041950|ref|YP_001541202.1| - 1.2e-30 106.3 0.3 1.8e-30 105.7 0.2 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|159041950|ref|YP_001541202.1| - 7.5e-08 32.7 0.0 1.7e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|159041950|ref|YP_001541202.1| - 5.4e-07 29.8 0.7 9.7e-07 29.0 0.5 1.4 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Glyco_hydro_cc PF11790.3 gi|159041950|ref|YP_001541202.1| - 3.3e-05 23.4 0.0 5.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core DUF4434 PF14488.1 gi|159041950|ref|YP_001541202.1| - 0.00015 21.5 0.0 0.0014 18.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4434) Cellulase-like PF12876.2 gi|159041950|ref|YP_001541202.1| - 0.035 14.5 0.0 0.41 11.1 0.0 2.6 3 0 0 3 3 3 0 Sugar-binding cellulase-like Glyco_hydro_42 PF02449.10 gi|159041950|ref|YP_001541202.1| - 0.038 13.0 0.0 0.077 12.1 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase PPR_2 PF13041.1 gi|159041950|ref|YP_001541202.1| - 0.056 13.4 0.0 0.99 9.4 0.0 2.3 2 0 0 2 2 2 0 PPR repeat family TFIIE_alpha PF02002.12 gi|159041952|ref|YP_001541204.1| - 1.3e-07 31.0 0.1 2.6e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit DUF3131 PF11329.3 gi|159041952|ref|YP_001541204.1| - 0.0045 15.7 0.0 0.0058 15.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3131) HTH_9 PF08221.6 gi|159041952|ref|YP_001541204.1| - 0.13 12.0 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Transp_cyt_pur PF02133.10 gi|159041953|ref|YP_001541205.1| - 2.6e-65 220.6 48.9 3.5e-65 220.2 33.9 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Nol1_Nop2_Fmu PF01189.12 gi|159041954|ref|YP_001541206.1| - 6.9e-44 150.3 0.0 9.1e-44 149.9 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|159041954|ref|YP_001541206.1| - 3.4e-06 26.7 0.0 6.8e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|159041954|ref|YP_001541206.1| - 0.0007 19.6 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|159041954|ref|YP_001541206.1| - 0.0086 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159041954|ref|YP_001541206.1| - 0.037 14.3 0.0 0.082 13.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|159041954|ref|YP_001541206.1| - 0.048 14.2 0.0 0.13 12.8 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|159041954|ref|YP_001541206.1| - 0.048 13.0 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Hydantoinase_B PF02538.9 gi|159041955|ref|YP_001541207.1| - 2.1e-163 544.3 0.1 2.3e-163 544.2 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|159041956|ref|YP_001541208.1| - 7.9e-88 294.3 6.3 2.2e-87 292.8 0.3 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|159041956|ref|YP_001541208.1| - 5.9e-48 162.6 0.1 1.3e-47 161.5 0.0 1.7 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|159041956|ref|YP_001541208.1| - 0.056 11.7 0.5 1.5 7.0 0.0 2.2 2 0 0 2 2 2 0 MutL protein BcrAD_BadFG PF01869.15 gi|159041956|ref|YP_001541208.1| - 0.11 11.7 0.1 7.3 5.7 0.0 2.3 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Lactamase_B PF00753.22 gi|159041957|ref|YP_001541209.1| - 9.1e-15 54.8 0.4 1.3e-14 54.3 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|159041957|ref|YP_001541209.1| - 1.7e-05 24.4 0.4 2.7e-05 23.8 0.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|159041957|ref|YP_001541209.1| - 0.00044 19.9 0.0 0.00083 19.0 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Asp_Glu_race PF01177.17 gi|159041958|ref|YP_001541210.1| - 1.2e-28 100.5 0.0 1.3e-28 100.3 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase PIN PF01850.16 gi|159041958|ref|YP_001541210.1| - 0.036 14.4 0.4 12 6.2 0.0 2.8 1 1 1 2 2 2 0 PIN domain Sugar_tr PF00083.19 gi|159041959|ref|YP_001541211.1| - 1.6e-28 99.4 39.3 3e-18 65.6 11.2 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041959|ref|YP_001541211.1| - 1.1e-23 83.5 51.1 1.1e-23 83.5 35.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTE PF02126.13 gi|159041960|ref|YP_001541212.1| - 0.046 12.7 0.0 0.44 9.5 0.0 2.2 1 1 0 1 1 1 0 Phosphotriesterase family Abhydrolase_9_N PF15420.1 gi|159041962|ref|YP_001541214.1| - 0.021 14.5 1.3 0.027 14.2 0.9 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus DUF2628 PF10947.3 gi|159041962|ref|YP_001541214.1| - 0.97 9.2 15.3 12 5.7 9.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2628) Band_7 PF01145.20 gi|159041963|ref|YP_001541215.1| - 7.7e-19 68.2 0.4 1.1e-18 67.7 0.3 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|159041963|ref|YP_001541215.1| - 3.8e-17 62.5 0.2 6.2e-17 61.8 0.1 1.4 1 1 0 1 1 1 1 SPFH domain-Band 7 family HisG PF01634.13 gi|159041964|ref|YP_001541216.1| - 2.5e-41 140.9 0.0 3.1e-41 140.6 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|159041964|ref|YP_001541216.1| - 9.3e-20 70.3 0.4 1.8e-19 69.4 0.3 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NIR_SIR_ferr PF03460.12 gi|159041964|ref|YP_001541216.1| - 0.082 12.5 0.1 4.7 6.9 0.0 3.0 3 0 0 3 3 3 0 Nitrite/Sulfite reductase ferredoxin-like half domain His_biosynth PF00977.16 gi|159041965|ref|YP_001541217.1| - 5.6e-40 137.0 0.3 6.5e-40 136.8 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|159041965|ref|YP_001541217.1| - 0.0032 16.7 1.3 0.22 10.7 0.0 2.1 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.15 gi|159041965|ref|YP_001541217.1| - 0.017 13.7 0.4 0.24 9.8 0.1 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IGPD PF00475.13 gi|159041966|ref|YP_001541218.1| - 1.2e-53 180.9 0.3 1.4e-53 180.6 0.2 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase DUF2415 PF10313.4 gi|159041966|ref|YP_001541218.1| - 0.007 16.0 0.1 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein domain (DUF2415) His_biosynth PF00977.16 gi|159041967|ref|YP_001541219.1| - 2e-79 266.0 0.8 2.3e-79 265.8 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|159041967|ref|YP_001541219.1| - 8.4e-09 34.6 0.0 0.00013 20.9 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|159041967|ref|YP_001541219.1| - 1.7e-06 27.2 1.4 0.0036 16.4 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|159041967|ref|YP_001541219.1| - 5.3e-06 25.7 5.5 0.0027 16.8 0.1 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|159041967|ref|YP_001541219.1| - 2.1e-05 23.7 0.1 0.12 11.4 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|159041967|ref|YP_001541219.1| - 2.6e-05 23.3 0.2 0.00052 19.0 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|159041967|ref|YP_001541219.1| - 0.00016 20.9 0.1 0.0016 17.7 0.1 2.1 2 0 0 2 2 2 1 PcrB family IGPS PF00218.16 gi|159041967|ref|YP_001541219.1| - 0.11 11.5 0.0 0.29 10.1 0.0 1.6 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase DUF4343 PF14243.1 gi|159041967|ref|YP_001541219.1| - 0.14 12.0 0.0 0.45 10.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4343) PRA-CH PF01502.13 gi|159041968|ref|YP_001541220.1| - 3.7e-33 112.9 0.1 5e-33 112.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase GATase PF00117.23 gi|159041969|ref|YP_001541221.1| - 3.7e-22 78.7 0.0 4.6e-22 78.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|159041969|ref|YP_001541221.1| - 2.1e-05 24.2 0.0 5.1e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|159041969|ref|YP_001541221.1| - 0.0004 20.0 0.0 0.00061 19.4 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|159041969|ref|YP_001541221.1| - 0.0013 18.2 0.6 0.14 11.6 0.4 2.7 2 1 0 2 2 2 1 Peptidase C26 Pentapeptide_2 PF01469.13 gi|159041969|ref|YP_001541221.1| - 1.7 8.3 7.8 0.97 9.1 0.6 3.0 3 0 0 3 3 3 0 Pentapeptide repeats (8 copies) PRA-PH PF01503.12 gi|159041970|ref|YP_001541222.1| - 7.9e-14 51.6 0.0 9e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|159041970|ref|YP_001541222.1| - 0.00077 19.3 0.1 0.001 18.9 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain E1_dh PF00676.15 gi|159041970|ref|YP_001541222.1| - 0.0094 14.7 0.0 0.0094 14.6 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Histidinol_dh PF00815.15 gi|159041971|ref|YP_001541223.1| - 1.6e-89 300.3 0.0 4.5e-89 298.9 0.0 1.6 1 1 0 1 1 1 1 Histidinol dehydrogenase adh_short PF00106.20 gi|159041972|ref|YP_001541224.1| - 1.6e-28 99.7 2.8 8.3e-28 97.3 1.9 2.0 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|159041972|ref|YP_001541224.1| - 1.4e-22 80.6 0.0 2e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|159041972|ref|YP_001541224.1| - 6e-08 32.5 0.9 4.3e-06 26.5 0.6 2.2 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|159041972|ref|YP_001541224.1| - 9.1e-05 21.9 0.2 0.00015 21.3 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|159041972|ref|YP_001541224.1| - 0.00024 19.8 1.6 0.00032 19.5 1.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Eno-Rase_NADH_b PF12242.3 gi|159041972|ref|YP_001541224.1| - 0.02 14.6 0.0 0.055 13.2 0.0 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|159041972|ref|YP_001541224.1| - 0.026 14.5 0.4 0.037 14.0 0.3 1.6 1 1 0 1 1 1 0 NADH(P)-binding Aminotran_1_2 PF00155.16 gi|159041973|ref|YP_001541225.1| - 9.6e-47 159.6 0.0 1.1e-46 159.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|159041973|ref|YP_001541225.1| - 0.0023 16.7 0.0 0.0036 16.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DUF4127 PF13552.1 gi|159041973|ref|YP_001541225.1| - 0.056 11.8 0.0 0.068 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) SBP_bac_5 PF00496.17 gi|159041974|ref|YP_001541226.1| - 4.1e-28 98.2 14.0 1.1e-27 96.9 9.6 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041974|ref|YP_001541226.1| - 0.012 15.3 14.5 0.018 14.7 10.1 1.1 1 0 0 1 1 1 0 Rifin/stevor family Na_H_Exchanger PF00999.16 gi|159041975|ref|YP_001541227.1| - 3.1e-47 160.9 46.7 4.2e-47 160.4 32.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Peroxin-13_N PF04088.8 gi|159041975|ref|YP_001541227.1| - 0.14 12.1 5.0 0.19 11.6 2.9 1.7 1 1 0 1 1 1 0 Peroxin 13, N-terminal region TraQ PF09679.5 gi|159041975|ref|YP_001541227.1| - 0.27 11.1 2.1 0.74 9.7 1.4 1.7 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) Aminotran_3 PF00202.16 gi|159041976|ref|YP_001541228.1| - 8.2e-64 215.5 0.0 1.1e-63 215.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|159041976|ref|YP_001541228.1| - 0.15 11.0 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Sugar_tr PF00083.19 gi|159041977|ref|YP_001541229.1| - 1e-16 60.6 14.2 1e-16 60.6 9.8 2.5 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159041977|ref|YP_001541229.1| - 1.6e-16 59.9 55.3 1.6e-16 59.9 38.4 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily SPK PF04435.13 gi|159041978|ref|YP_001541230.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF545) Radical_SAM PF04055.16 gi|159041979|ref|YP_001541231.1| - 6.7e-16 58.9 0.0 1e-15 58.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|159041980|ref|YP_001541232.1| - 1.1e-12 48.4 0.0 1.7e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.9 gi|159041981|ref|YP_001541233.1| - 1.2e-29 103.3 0.0 1.4e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis DUF4350 PF14258.1 gi|159041981|ref|YP_001541233.1| - 0.082 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Epimerase PF01370.16 gi|159041982|ref|YP_001541234.1| - 9.7e-23 80.8 0.0 1.4e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|159041982|ref|YP_001541234.1| - 2.1e-07 30.1 0.0 8.8e-07 28.0 0.0 2.0 2 1 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|159041982|ref|YP_001541234.1| - 0.0015 18.4 0.2 0.0049 16.7 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|159041982|ref|YP_001541234.1| - 0.0083 15.8 0.0 0.022 14.4 0.0 1.7 2 0 0 2 2 2 1 KR domain Polysacc_synt_2 PF02719.10 gi|159041982|ref|YP_001541234.1| - 0.0087 14.9 0.1 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein UDPG_MGDP_dh_N PF03721.9 gi|159041982|ref|YP_001541234.1| - 0.0091 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_transf_28 PF03033.15 gi|159041982|ref|YP_001541234.1| - 0.0099 15.6 0.0 0.039 13.7 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain DFP PF04127.10 gi|159041982|ref|YP_001541234.1| - 0.046 13.3 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_binding_10 PF13460.1 gi|159041982|ref|YP_001541234.1| - 0.057 13.4 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding Thi4 PF01946.12 gi|159041983|ref|YP_001541235.1| - 2.6e-74 249.1 1.8 3.1e-74 248.9 1.2 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|159041983|ref|YP_001541235.1| - 1.9e-14 53.3 4.5 3.4e-09 36.0 0.5 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|159041983|ref|YP_001541235.1| - 2.1e-10 40.4 0.2 4.3e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|159041983|ref|YP_001541235.1| - 1.7e-09 37.0 5.0 3.9e-07 29.2 0.7 3.0 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|159041983|ref|YP_001541235.1| - 3.3e-09 36.3 0.4 4.6e-09 35.8 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|159041983|ref|YP_001541235.1| - 8.2e-08 32.5 0.1 1.8e-07 31.4 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|159041983|ref|YP_001541235.1| - 4.9e-07 29.1 0.0 7.2e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|159041983|ref|YP_001541235.1| - 1e-05 25.5 0.1 1.5e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|159041983|ref|YP_001541235.1| - 3e-05 22.6 0.8 4.8e-05 22.0 0.5 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|159041983|ref|YP_001541235.1| - 0.00011 22.5 0.6 0.0026 18.1 0.2 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159041983|ref|YP_001541235.1| - 0.00018 20.5 0.6 0.00026 19.9 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|159041983|ref|YP_001541235.1| - 0.0031 16.6 0.2 0.0053 15.8 0.1 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase ThiF PF00899.16 gi|159041983|ref|YP_001541235.1| - 0.0033 17.2 0.1 0.008 16.0 0.1 1.6 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.15 gi|159041983|ref|YP_001541235.1| - 0.013 15.6 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|159041983|ref|YP_001541235.1| - 0.017 14.0 0.2 0.05 12.5 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|159041983|ref|YP_001541235.1| - 0.019 13.6 0.1 0.031 12.8 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|159041983|ref|YP_001541235.1| - 0.099 12.4 0.3 0.19 11.4 0.2 1.5 2 0 0 2 2 1 0 FAD-NAD(P)-binding DNA_pol_B_exo1 PF03104.14 gi|159041984|ref|YP_001541236.1| - 1.4e-07 30.6 0.2 1.7e-07 30.4 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|159041984|ref|YP_001541236.1| - 4.4e-06 26.3 0.1 5.7e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Pox_F12L PF03337.8 gi|159041984|ref|YP_001541236.1| - 0.13 10.1 0.0 0.16 9.8 0.0 1.1 1 0 0 1 1 1 0 Poxvirus F12L protein Arch_ATPase PF01637.13 gi|159041985|ref|YP_001541237.1| - 2.5e-57 194.2 0.0 3.4e-57 193.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|159041985|ref|YP_001541237.1| - 8.8e-05 22.5 0.0 0.00021 21.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|159041985|ref|YP_001541237.1| - 0.02 14.7 0.0 0.082 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|159041985|ref|YP_001541237.1| - 0.025 14.7 0.0 0.38 10.9 0.0 2.7 3 0 0 3 3 3 0 RNA helicase AAA_22 PF13401.1 gi|159041985|ref|YP_001541237.1| - 0.064 13.4 0.0 0.17 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain SMC_hinge PF06470.8 gi|159041985|ref|YP_001541237.1| - 0.071 13.0 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain AAA PF00004.24 gi|159041985|ref|YP_001541237.1| - 0.072 13.2 0.0 0.21 11.7 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|159041985|ref|YP_001541237.1| - 0.14 11.7 0.0 0.37 10.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain HTH_10 PF04967.7 gi|159041986|ref|YP_001541238.1| - 3e-15 55.5 0.0 5.9e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|159041986|ref|YP_001541238.1| - 0.0014 17.9 0.0 0.012 14.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|159041986|ref|YP_001541238.1| - 0.0082 15.5 0.0 0.025 13.9 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.6 gi|159041986|ref|YP_001541238.1| - 0.079 12.7 0.0 0.31 10.8 0.0 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4_2 PF08281.7 gi|159041986|ref|YP_001541238.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 SBP_bac_5 PF00496.17 gi|159041987|ref|YP_001541239.1| - 1e-21 77.1 12.2 1.9e-21 76.3 8.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159041987|ref|YP_001541239.1| - 0.19 11.3 9.0 0.3 10.6 6.2 1.2 1 0 0 1 1 1 0 Rifin/stevor family UbiA PF01040.13 gi|159041988|ref|YP_001541240.1| - 0.069 12.3 9.9 0.077 12.2 6.9 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family TctB PF07331.6 gi|159041988|ref|YP_001541240.1| - 0.31 10.6 7.4 0.36 10.4 5.1 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3325 PF11804.3 gi|159041988|ref|YP_001541240.1| - 0.33 10.8 2.7 0.41 10.6 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Na_Ca_ex PF01699.19 gi|159041988|ref|YP_001541240.1| - 0.4 10.2 7.2 0.47 10.0 5.0 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein RmlD_sub_bind PF04321.12 gi|159041989|ref|YP_001541241.1| - 2.3e-59 200.6 0.0 2.5e-59 200.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|159041989|ref|YP_001541241.1| - 2.2e-17 63.2 0.0 3e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|159041989|ref|YP_001541241.1| - 2.8e-09 36.3 0.0 2.2e-08 33.3 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|159041989|ref|YP_001541241.1| - 1.5e-06 27.3 0.0 2.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|159041989|ref|YP_001541241.1| - 1.2e-05 24.1 0.0 1.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF58 PF01882.13 gi|159041990|ref|YP_001541242.1| - 1.9e-13 50.3 0.0 3.4e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|159041991|ref|YP_001541243.1| - 6.4e-40 135.8 0.1 1.2e-39 134.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|159041991|ref|YP_001541243.1| - 4.9e-17 61.9 0.0 1.1e-16 60.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|159041991|ref|YP_001541243.1| - 5.7e-09 36.2 0.2 2.8e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|159041991|ref|YP_001541243.1| - 2.6e-07 29.7 0.1 6.9e-07 28.3 0.0 1.7 1 1 0 1 1 1 1 MCM2/3/5 family AAA_18 PF13238.1 gi|159041991|ref|YP_001541243.1| - 3.1e-06 27.5 0.0 5.8e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|159041991|ref|YP_001541243.1| - 5.1e-05 22.4 0.1 0.00012 21.2 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Viral_helicase1 PF01443.13 gi|159041991|ref|YP_001541243.1| - 0.00011 21.8 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|159041991|ref|YP_001541243.1| - 0.00013 22.8 0.3 0.00023 21.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|159041991|ref|YP_001541243.1| - 0.00013 21.1 4.0 0.001 18.3 0.9 2.2 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|159041991|ref|YP_001541243.1| - 0.00014 22.0 1.2 0.00091 19.3 0.2 2.4 2 1 0 2 2 1 1 AAA domain AAA_PrkA PF08298.6 gi|159041991|ref|YP_001541243.1| - 0.00014 20.6 0.0 0.2 10.3 0.0 2.1 2 0 0 2 2 2 2 PrkA AAA domain AAA_16 PF13191.1 gi|159041991|ref|YP_001541243.1| - 0.00019 21.4 0.9 0.0018 18.2 0.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|159041991|ref|YP_001541243.1| - 0.00021 20.8 0.1 0.00054 19.4 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|159041991|ref|YP_001541243.1| - 0.00092 19.3 0.0 0.002 18.3 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_30 PF13604.1 gi|159041991|ref|YP_001541243.1| - 0.0012 18.4 0.6 0.18 11.3 0.4 2.2 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|159041991|ref|YP_001541243.1| - 0.0012 18.4 0.3 0.0022 17.6 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|159041991|ref|YP_001541243.1| - 0.0014 18.9 0.1 0.0037 17.5 0.1 1.7 2 0 0 2 2 2 1 ABC transporter AAA_33 PF13671.1 gi|159041991|ref|YP_001541243.1| - 0.0018 18.1 0.0 0.0035 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|159041991|ref|YP_001541243.1| - 0.0023 17.8 0.0 0.0091 15.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|159041991|ref|YP_001541243.1| - 0.0025 16.6 0.1 0.0025 16.6 0.1 1.9 3 0 0 3 3 3 1 TIP49 C-terminus T2SE PF00437.15 gi|159041991|ref|YP_001541243.1| - 0.0032 16.4 0.1 0.007 15.3 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|159041991|ref|YP_001541243.1| - 0.0044 16.9 0.0 0.015 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain Mg_chelatase_2 PF13335.1 gi|159041991|ref|YP_001541243.1| - 0.0046 17.3 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|159041991|ref|YP_001541243.1| - 0.0056 16.4 0.4 0.013 15.2 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_29 PF13555.1 gi|159041991|ref|YP_001541243.1| - 0.0056 16.1 0.2 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|159041991|ref|YP_001541243.1| - 0.0065 15.8 1.6 0.0087 15.4 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|159041991|ref|YP_001541243.1| - 0.0082 16.4 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|159041991|ref|YP_001541243.1| - 0.0087 15.5 0.1 0.016 14.7 0.1 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Sigma54_activ_2 PF14532.1 gi|159041991|ref|YP_001541243.1| - 0.016 15.2 0.0 0.074 13.1 0.0 2.0 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|159041991|ref|YP_001541243.1| - 0.021 14.2 2.3 0.11 11.8 0.3 2.2 2 1 0 2 2 2 0 AAA-like domain AAA_21 PF13304.1 gi|159041991|ref|YP_001541243.1| - 0.021 14.7 0.1 0.072 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|159041991|ref|YP_001541243.1| - 0.025 14.1 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|159041991|ref|YP_001541243.1| - 0.026 14.4 0.1 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|159041991|ref|YP_001541243.1| - 0.028 13.2 0.0 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|159041991|ref|YP_001541243.1| - 0.039 13.6 0.2 0.079 12.6 0.2 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|159041991|ref|YP_001541243.1| - 0.042 13.2 0.1 0.086 12.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|159041991|ref|YP_001541243.1| - 0.046 13.1 0.0 0.084 12.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF815 PF05673.8 gi|159041991|ref|YP_001541243.1| - 0.069 12.0 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Polyoma_lg_T_C PF06431.6 gi|159041991|ref|YP_001541243.1| - 0.074 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus FtsK_SpoIIIE PF01580.13 gi|159041991|ref|YP_001541243.1| - 0.095 12.1 2.4 1.2 8.5 0.2 2.5 2 1 0 2 2 2 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.12 gi|159041991|ref|YP_001541243.1| - 0.11 12.0 0.1 0.24 10.8 0.1 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|159041991|ref|YP_001541243.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|159041991|ref|YP_001541243.1| - 0.15 11.1 0.1 0.35 9.9 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|159041991|ref|YP_001541243.1| - 0.16 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SKI PF01202.17 gi|159041991|ref|YP_001541243.1| - 0.26 11.1 1.5 0.41 10.5 0.6 1.6 2 0 0 2 2 1 0 Shikimate kinase AAA_24 PF13479.1 gi|159041991|ref|YP_001541243.1| - 0.32 10.5 1.0 0.57 9.7 0.7 1.3 1 0 0 1 1 1 0 AAA domain DUF4129 PF13559.1 gi|159041993|ref|YP_001541245.1| - 5.3e-08 32.7 0.0 1.5e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4480 PF13715.1 gi|159041993|ref|YP_001541245.1| - 0.0015 18.5 0.4 0.054 13.5 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|159041993|ref|YP_001541245.1| - 0.0047 16.9 2.3 0.28 11.2 0.1 3.4 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain SUN PF03856.8 gi|159041993|ref|YP_001541245.1| - 0.27 10.5 0.0 0.5 9.6 0.0 1.4 1 0 0 1 1 1 0 Beta-glucosidase (SUN family) Arch_ATPase PF01637.13 gi|159041996|ref|YP_001541248.1| - 1e-57 195.5 0.0 1.7e-57 194.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|159041996|ref|YP_001541248.1| - 3.7e-06 27.0 0.0 8.4e-06 25.8 0.0 1.7 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|159041996|ref|YP_001541248.1| - 0.00032 20.8 0.0 0.00086 19.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.4 gi|159041996|ref|YP_001541248.1| - 0.00075 18.5 0.0 0.0013 17.7 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.24 gi|159041996|ref|YP_001541248.1| - 0.00089 19.4 0.0 0.009 16.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|159041996|ref|YP_001541248.1| - 0.00092 19.1 0.1 0.0035 17.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|159041996|ref|YP_001541248.1| - 0.0037 16.9 0.0 0.014 15.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|159041996|ref|YP_001541248.1| - 0.0045 17.7 0.3 0.024 15.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|159041996|ref|YP_001541248.1| - 0.0056 15.5 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain RNA_helicase PF00910.17 gi|159041996|ref|YP_001541248.1| - 0.01 15.9 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|159041996|ref|YP_001541248.1| - 0.014 15.3 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|159041996|ref|YP_001541248.1| - 0.023 14.3 0.0 0.044 13.4 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|159041996|ref|YP_001541248.1| - 0.025 14.0 0.0 0.087 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA-like domain DUF815 PF05673.8 gi|159041996|ref|YP_001541248.1| - 0.026 13.4 0.0 0.08 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_23 PF13476.1 gi|159041996|ref|YP_001541248.1| - 0.033 14.5 0.0 0.12 12.7 0.0 1.9 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|159041996|ref|YP_001541248.1| - 0.048 14.1 0.0 0.097 13.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|159041996|ref|YP_001541248.1| - 0.087 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|159041996|ref|YP_001541248.1| - 0.092 12.3 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Glyco_trans_4_3 PF12000.3 gi|159041996|ref|YP_001541248.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Gkycosyl transferase family 4 group SMC_N PF02463.14 gi|159041996|ref|YP_001541248.1| - 0.17 11.1 0.0 0.34 10.0 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain HEPN PF05168.9 gi|159041997|ref|YP_001541249.1| - 6.2e-22 77.6 1.8 8.6e-22 77.2 1.3 1.1 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|159041997|ref|YP_001541249.1| - 0.38 10.8 5.3 0.098 12.7 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_11 PF13414.1 gi|159041997|ref|YP_001541249.1| - 0.58 9.8 6.3 1.5 8.5 4.4 1.7 1 1 0 1 1 1 0 TPR repeat NTP_transf_2 PF01909.18 gi|159041998|ref|YP_001541250.1| - 4.8e-08 33.2 0.0 5.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Arch_ATPase PF01637.13 gi|159041999|ref|YP_001541251.1| - 7.8e-57 192.6 0.0 1.4e-56 191.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|159041999|ref|YP_001541251.1| - 0.00023 21.2 0.0 0.00039 20.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|159041999|ref|YP_001541251.1| - 0.0022 18.1 0.2 0.0079 16.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|159041999|ref|YP_001541251.1| - 0.0099 15.3 0.0 0.068 12.5 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain MobB PF03205.9 gi|159041999|ref|YP_001541251.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|159041999|ref|YP_001541251.1| - 0.013 15.3 0.1 0.032 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|159041999|ref|YP_001541251.1| - 0.017 14.6 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|159041999|ref|YP_001541251.1| - 0.02 14.5 0.0 0.053 13.1 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein NTPase_1 PF03266.10 gi|159041999|ref|YP_001541251.1| - 0.022 14.4 0.0 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 NTPase DAP3 PF10236.4 gi|159041999|ref|YP_001541251.1| - 0.023 13.6 0.0 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 NACHT PF05729.7 gi|159041999|ref|YP_001541251.1| - 0.028 14.0 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|159041999|ref|YP_001541251.1| - 0.043 13.9 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA PF00004.24 gi|159041999|ref|YP_001541251.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|159041999|ref|YP_001541251.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|159041999|ref|YP_001541251.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ArgK PF03308.11 gi|159041999|ref|YP_001541251.1| - 0.13 11.0 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_5 PF07728.9 gi|159041999|ref|YP_001541251.1| - 0.14 11.8 0.0 0.33 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|159041999|ref|YP_001541251.1| - 0.15 12.5 0.0 0.34 11.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein KAP_NTPase PF07693.9 gi|159041999|ref|YP_001541251.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain DUF86 PF01934.12 gi|159042000|ref|YP_001541252.1| - 5.7e-14 51.7 0.2 7.2e-14 51.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.6 gi|159042000|ref|YP_001541252.1| - 0.042 13.6 0.0 0.061 13.1 0.0 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like NTP_transf_2 PF01909.18 gi|159042001|ref|YP_001541253.1| - 6.2e-07 29.6 0.5 8.4e-07 29.2 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Arch_ATPase PF01637.13 gi|159042002|ref|YP_001541254.1| - 1.5e-55 188.4 0.0 2e-55 188.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|159042002|ref|YP_001541254.1| - 5.7e-06 26.4 0.0 1.1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|159042002|ref|YP_001541254.1| - 0.0019 17.8 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|159042002|ref|YP_001541254.1| - 0.0022 16.8 0.0 0.0045 15.8 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_14 PF13173.1 gi|159042002|ref|YP_001541254.1| - 0.011 15.6 0.0 0.1 12.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|159042002|ref|YP_001541254.1| - 0.021 15.0 0.0 0.05 13.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|159042002|ref|YP_001541254.1| - 0.031 14.4 0.0 0.06 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|159042002|ref|YP_001541254.1| - 0.033 13.6 0.0 0.93 8.8 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain MobB PF03205.9 gi|159042002|ref|YP_001541254.1| - 0.07 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|159042002|ref|YP_001541254.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DAP3 PF10236.4 gi|159042002|ref|YP_001541254.1| - 0.16 10.8 0.0 0.32 9.8 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PaREP1 PF05942.6 gi|159042003|ref|YP_001541255.1| - 1.7e-31 108.4 4.1 1.7e-31 108.4 2.8 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family TFX_C PF14601.1 gi|159042003|ref|YP_001541255.1| - 0.044 13.5 0.3 0.59 9.9 0.0 2.3 1 1 1 2 2 2 0 DNA_binding protein, TFX, C-term tRNA-synt_His PF13393.1 gi|159042003|ref|YP_001541255.1| - 0.078 12.0 0.3 0.095 11.7 0.2 1.1 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Transaldolase PF00923.14 gi|159042003|ref|YP_001541255.1| - 0.093 11.8 0.3 0.17 10.9 0.1 1.5 1 1 0 1 1 1 0 Transaldolase TPR_11 PF13414.1 gi|159042003|ref|YP_001541255.1| - 0.1 12.2 2.8 0.29 10.8 1.3 2.2 1 1 1 2 2 2 0 TPR repeat DUF4398 PF14346.1 gi|159042003|ref|YP_001541255.1| - 0.11 12.6 4.1 0.2 11.7 2.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) TPR_19 PF14559.1 gi|159042003|ref|YP_001541255.1| - 1.1 9.7 5.9 3.5 8.0 0.7 2.5 1 1 1 2 2 2 0 Tetratricopeptide repeat AAA_21 PF13304.1 gi|159042004|ref|YP_001541256.1| - 1.2e-15 58.2 3.4 3.4e-14 53.4 2.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|159042004|ref|YP_001541256.1| - 2.6e-13 49.8 7.0 2.9e-08 33.2 2.4 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|159042004|ref|YP_001541256.1| - 1.2e-10 42.1 0.1 5.4e-10 39.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF3696 PF12476.3 gi|159042004|ref|YP_001541256.1| - 3.2e-05 23.7 0.1 6.8e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3696) AAA_29 PF13555.1 gi|159042004|ref|YP_001541256.1| - 0.00011 21.6 0.0 0.00019 20.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|159042004|ref|YP_001541256.1| - 0.00019 20.7 0.0 0.00034 19.9 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|159042004|ref|YP_001541256.1| - 0.037 13.1 0.0 0.087 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) Baculo_LEF5 PF04838.7 gi|159042005|ref|YP_001541257.1| - 0.0056 16.4 0.2 0.0092 15.7 0.1 1.3 1 0 0 1 1 1 1 Baculoviridae late expression factor 5 FAM92 PF06730.6 gi|159042005|ref|YP_001541257.1| - 0.017 14.5 1.0 0.026 13.8 0.7 1.2 1 0 0 1 1 1 0 FAM92 protein Glycos_transf_1 PF00534.15 gi|159042006|ref|YP_001541258.1| - 8.1e-28 96.9 0.3 2e-27 95.6 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|159042006|ref|YP_001541258.1| - 1.1e-22 80.9 0.7 1.6e-22 80.3 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|159042006|ref|YP_001541258.1| - 4.9e-19 68.7 0.6 7.8e-19 68.0 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|159042006|ref|YP_001541258.1| - 1.5e-06 28.1 0.0 8.9e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|159042006|ref|YP_001541258.1| - 0.0001 22.4 0.0 0.00031 20.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|159042006|ref|YP_001541258.1| - 0.00051 19.6 1.6 0.019 14.4 0.1 2.8 2 1 0 3 3 3 1 Starch synthase catalytic domain Glycos_transf_N PF04413.11 gi|159042006|ref|YP_001541258.1| - 0.044 12.9 0.0 0.15 11.1 0.0 1.8 2 0 0 2 2 2 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glycos_transf_2 PF00535.21 gi|159042007|ref|YP_001541259.1| - 2.7e-15 56.4 2.1 4.6e-15 55.7 1.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159042007|ref|YP_001541259.1| - 1.6e-08 34.6 0.0 3.1e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|159042007|ref|YP_001541259.1| - 3.9e-05 22.8 0.3 7.2e-05 22.0 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HD_2 PF12917.2 gi|159042007|ref|YP_001541259.1| - 0.043 13.5 0.1 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme Glycos_transf_1 PF00534.15 gi|159042008|ref|YP_001541260.1| - 6.8e-36 123.2 0.0 5.1e-35 120.4 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|159042008|ref|YP_001541260.1| - 3e-17 63.2 0.3 5e-17 62.4 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|159042008|ref|YP_001541260.1| - 7.5e-16 58.5 0.2 1.5e-14 54.2 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|159042008|ref|YP_001541260.1| - 2.3e-08 33.9 1.6 3.9e-08 33.2 1.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|159042008|ref|YP_001541260.1| - 1.5e-07 31.5 0.0 3.2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|159042008|ref|YP_001541260.1| - 7.5e-06 25.8 0.2 4.6e-05 23.2 0.1 2.4 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|159042008|ref|YP_001541260.1| - 0.0037 16.7 0.2 0.013 14.9 0.2 1.9 1 1 1 2 2 2 1 Starch synthase catalytic domain Epimerase PF01370.16 gi|159042009|ref|YP_001541261.1| - 1.1e-57 195.2 0.3 1.5e-57 194.7 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|159042009|ref|YP_001541261.1| - 7.8e-23 80.5 0.1 1e-22 80.2 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|159042009|ref|YP_001541261.1| - 2.5e-21 75.8 0.0 2.8e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|159042009|ref|YP_001541261.1| - 7.3e-19 67.7 0.1 1.2e-17 63.7 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|159042009|ref|YP_001541261.1| - 6.1e-17 61.3 1.7 3.9e-15 55.4 1.2 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|159042009|ref|YP_001541261.1| - 1.4e-16 61.0 0.0 2.3e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|159042009|ref|YP_001541261.1| - 1.1e-08 35.1 0.9 1.8e-07 31.2 0.6 2.4 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|159042009|ref|YP_001541261.1| - 0.0001 21.6 0.1 0.00024 20.4 0.1 1.7 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|159042009|ref|YP_001541261.1| - 0.0076 15.9 0.1 0.046 13.3 0.1 2.1 1 1 0 1 1 1 1 KR domain Shikimate_DH PF01488.15 gi|159042009|ref|YP_001541261.1| - 0.016 15.2 0.1 0.03 14.4 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Ldh_1_N PF00056.18 gi|159042009|ref|YP_001541261.1| - 0.016 14.9 0.1 0.026 14.3 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|159042009|ref|YP_001541261.1| - 0.019 15.3 0.0 0.042 14.2 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|159042009|ref|YP_001541261.1| - 0.034 13.1 0.1 0.056 12.4 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase DapB_N PF01113.15 gi|159042009|ref|YP_001541261.1| - 0.1 12.4 0.2 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_2 PF03446.10 gi|159042009|ref|YP_001541261.1| - 0.11 12.2 0.0 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|159042009|ref|YP_001541261.1| - 0.15 11.6 0.8 0.31 10.6 0.0 1.9 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.15 gi|159042010|ref|YP_001541262.1| - 3.1e-21 75.5 0.0 2e-20 72.9 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|159042010|ref|YP_001541262.1| - 2.5e-17 63.1 0.2 5e-17 62.1 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|159042010|ref|YP_001541262.1| - 1.1e-14 54.7 0.0 6.8e-14 52.1 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159042010|ref|YP_001541262.1| - 3.8e-10 39.8 0.1 2.2e-09 37.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|159042010|ref|YP_001541262.1| - 9.3e-10 38.8 0.0 2.8e-07 30.8 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|159042010|ref|YP_001541262.1| - 0.00045 20.0 3.4 0.0015 18.4 0.3 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like DUF2431 PF10354.4 gi|159042010|ref|YP_001541262.1| - 0.0093 15.9 0.4 1.1 9.1 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2431) Glyco_transf_5 PF08323.6 gi|159042010|ref|YP_001541262.1| - 0.054 12.9 0.2 0.21 11.0 0.1 2.0 1 1 1 2 2 2 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|159042012|ref|YP_001541264.1| - 2e-22 79.4 0.1 4e-22 78.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042012|ref|YP_001541264.1| - 6.2e-13 49.0 0.0 3.4e-12 46.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159042012|ref|YP_001541264.1| - 6.3e-05 23.1 0.0 0.0045 17.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|159042013|ref|YP_001541265.1| - 1.5e-07 30.9 0.0 2.4e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042013|ref|YP_001541265.1| - 6.5e-07 29.5 0.0 1.9e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159042013|ref|YP_001541265.1| - 0.00023 21.3 0.0 0.00078 19.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|159042015|ref|YP_001541267.1| - 1.6e-12 47.2 0.0 3.2e-12 46.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042015|ref|YP_001541267.1| - 8e-05 22.8 0.0 0.00013 22.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_21 PF05050.7 gi|159042016|ref|YP_001541268.1| - 1.3e-17 64.2 0.0 2e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|159042016|ref|YP_001541268.1| - 8.2e-08 32.0 0.2 1.2e-07 31.5 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|159042016|ref|YP_001541268.1| - 1.5e-06 28.7 0.0 4.1e-06 27.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|159042016|ref|YP_001541268.1| - 0.0025 17.3 0.0 0.0036 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|159042016|ref|YP_001541268.1| - 0.014 14.5 0.0 0.019 14.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Polysacc_deac_1 PF01522.16 gi|159042017|ref|YP_001541269.1| - 6.7e-24 83.8 0.0 1.8e-23 82.5 0.0 1.5 2 0 0 2 2 2 1 Polysaccharide deacetylase DUF2797 PF10977.3 gi|159042017|ref|YP_001541269.1| - 0.091 12.3 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) HrpB1_HrpK PF09613.5 gi|159042017|ref|YP_001541269.1| - 0.098 12.1 0.1 0.84 9.1 0.0 2.0 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) Glycos_transf_1 PF00534.15 gi|159042018|ref|YP_001541270.1| - 3.5e-16 59.1 0.1 1.9e-15 56.7 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042018|ref|YP_001541270.1| - 5.7e-14 52.4 0.6 1.5e-13 51.0 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159042018|ref|YP_001541270.1| - 0.0011 19.2 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|159042019|ref|YP_001541271.1| - 5.7e-37 126.7 0.0 8.5e-37 126.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042019|ref|YP_001541271.1| - 3.5e-19 69.2 0.1 2.7e-18 66.4 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159042019|ref|YP_001541271.1| - 2.2e-05 24.6 0.0 9.7e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Epimerase PF01370.16 gi|159042020|ref|YP_001541272.1| - 4.7e-57 193.1 0.0 6e-57 192.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|159042020|ref|YP_001541272.1| - 2.1e-23 82.6 0.0 2.6e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|159042020|ref|YP_001541272.1| - 1.4e-21 76.4 0.0 1.9e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|159042020|ref|YP_001541272.1| - 1.9e-17 63.0 0.0 9.7e-17 60.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|159042020|ref|YP_001541272.1| - 9.4e-14 50.9 0.1 7.3e-13 48.0 0.1 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|159042020|ref|YP_001541272.1| - 2.9e-12 46.9 0.0 3.7e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|159042020|ref|YP_001541272.1| - 2.6e-10 40.4 0.1 4.1e-10 39.8 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|159042020|ref|YP_001541272.1| - 3.2e-05 23.0 0.2 4.4e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Epimerase_Csub PF13950.1 gi|159042020|ref|YP_001541272.1| - 4.1e-05 23.4 0.0 8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|159042020|ref|YP_001541272.1| - 7.3e-05 22.5 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|159042020|ref|YP_001541272.1| - 0.00018 20.8 0.0 0.0007 18.9 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family Pyr_redox PF00070.22 gi|159042020|ref|YP_001541272.1| - 0.0029 17.9 0.1 0.0061 16.9 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|159042020|ref|YP_001541272.1| - 0.0041 17.1 0.1 0.015 15.2 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain Ldh_1_N PF00056.18 gi|159042020|ref|YP_001541272.1| - 0.0061 16.3 0.0 0.0087 15.8 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain DAO PF01266.19 gi|159042020|ref|YP_001541272.1| - 0.011 14.6 0.0 0.022 13.6 0.0 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|159042020|ref|YP_001541272.1| - 0.022 14.1 0.1 0.046 13.0 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|159042020|ref|YP_001541272.1| - 0.028 14.0 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|159042020|ref|YP_001541272.1| - 0.045 13.7 0.1 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|159042020|ref|YP_001541272.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Glycos_transf_1 PF00534.15 gi|159042021|ref|YP_001541273.1| - 9.2e-18 64.2 0.0 1.5e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|159042021|ref|YP_001541273.1| - 9.9e-12 45.2 5.4 9.9e-12 45.2 3.8 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|159042021|ref|YP_001541273.1| - 8.7e-09 35.6 0.0 3.3e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|159042021|ref|YP_001541273.1| - 8.9e-05 22.2 0.5 0.00015 21.5 0.3 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Galactosyl_T PF01762.16 gi|159042021|ref|YP_001541273.1| - 0.056 13.0 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 Galactosyltransferase PIN PF01850.16 gi|159042022|ref|YP_001541274.1| - 1.6e-07 31.7 0.1 1.8e-07 31.5 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF1972 PF09314.6 gi|159042022|ref|YP_001541274.1| - 0.043 13.2 0.0 0.048 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1972) AAA_18 PF13238.1 gi|159042023|ref|YP_001541275.1| - 7.5e-07 29.5 0.0 4.6e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|159042023|ref|YP_001541275.1| - 6e-06 27.0 0.0 1.5e-05 25.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|159042023|ref|YP_001541275.1| - 1.1e-05 25.4 0.0 0.0051 16.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|159042023|ref|YP_001541275.1| - 0.0001 21.7 0.0 0.0044 16.4 0.0 2.0 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.1 gi|159042023|ref|YP_001541275.1| - 0.0001 22.3 0.1 0.00016 21.6 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|159042023|ref|YP_001541275.1| - 0.00011 22.3 0.0 0.00028 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|159042023|ref|YP_001541275.1| - 0.00016 21.3 0.1 0.00052 19.7 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase MobB PF03205.9 gi|159042023|ref|YP_001541275.1| - 0.0002 21.0 0.1 0.00043 20.0 0.0 1.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|159042023|ref|YP_001541275.1| - 0.00048 19.0 0.0 0.0008 18.2 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_33 PF13671.1 gi|159042023|ref|YP_001541275.1| - 0.00059 19.7 0.0 0.0094 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|159042023|ref|YP_001541275.1| - 0.001 19.2 0.0 0.002 18.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|159042023|ref|YP_001541275.1| - 0.0019 17.4 0.0 0.0039 16.4 0.0 1.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 Glyco_transf_4 PF13439.1 gi|159042023|ref|YP_001541275.1| - 0.0027 17.4 0.0 0.0039 16.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 AAA_19 PF13245.1 gi|159042023|ref|YP_001541275.1| - 0.0041 16.8 0.1 0.052 13.3 0.0 2.6 3 0 0 3 3 3 1 Part of AAA domain SKI PF01202.17 gi|159042023|ref|YP_001541275.1| - 0.0043 16.9 0.1 0.26 11.1 0.0 2.2 2 0 0 2 2 2 1 Shikimate kinase RNA_helicase PF00910.17 gi|159042023|ref|YP_001541275.1| - 0.0056 16.8 0.1 0.017 15.2 0.0 1.8 2 0 0 2 2 2 1 RNA helicase DUF258 PF03193.11 gi|159042023|ref|YP_001541275.1| - 0.0072 15.5 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|159042023|ref|YP_001541275.1| - 0.0077 15.9 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|159042023|ref|YP_001541275.1| - 0.0077 15.9 0.1 0.015 15.0 0.0 1.4 2 0 0 2 2 1 1 NTPase IstB_IS21 PF01695.12 gi|159042023|ref|YP_001541275.1| - 0.0097 15.3 0.1 0.021 14.2 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|159042023|ref|YP_001541275.1| - 0.011 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.18 gi|159042023|ref|YP_001541275.1| - 0.015 14.7 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|159042023|ref|YP_001541275.1| - 0.016 14.6 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|159042023|ref|YP_001541275.1| - 0.021 14.7 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Glyco_trans_4_4 PF13579.1 gi|159042023|ref|YP_001541275.1| - 0.023 14.8 0.2 0.03 14.4 0.1 1.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain AAA_29 PF13555.1 gi|159042023|ref|YP_001541275.1| - 0.024 14.1 0.2 0.059 12.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|159042023|ref|YP_001541275.1| - 0.027 13.8 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|159042023|ref|YP_001541275.1| - 0.053 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PRK PF00485.13 gi|159042023|ref|YP_001541275.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CobU PF02283.11 gi|159042023|ref|YP_001541275.1| - 0.11 11.9 0.1 0.93 8.8 0.0 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ABC_tran PF00005.22 gi|159042023|ref|YP_001541275.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter NTP_transf_5 PF14907.1 gi|159042024|ref|YP_001541276.1| - 3.6e-07 29.7 0.1 5.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Polysacc_synt PF01943.12 gi|159042025|ref|YP_001541277.1| - 7.2e-11 41.8 36.3 7.2e-11 41.8 25.2 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein DUF1616 PF07760.6 gi|159042027|ref|YP_001541279.1| - 2.6e-15 56.3 10.3 2.6e-15 56.3 7.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1616) DUF1616 PF07760.6 gi|159042028|ref|YP_001541280.1| - 2.5e-30 105.6 8.6 3.3e-30 105.2 5.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4395 PF14340.1 gi|159042028|ref|YP_001541280.1| - 0.016 15.3 2.0 0.047 13.7 1.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) MFS_1 PF07690.11 gi|159042028|ref|YP_001541280.1| - 0.027 13.1 8.0 0.036 12.7 5.6 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily Glycos_transf_2 PF00535.21 gi|159042029|ref|YP_001541281.1| - 3.1e-20 72.5 0.0 4.6e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159042029|ref|YP_001541281.1| - 9.1e-10 38.7 0.0 4e-09 36.6 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|159042029|ref|YP_001541281.1| - 0.0002 21.1 0.0 0.00035 20.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|159042029|ref|YP_001541281.1| - 0.027 14.7 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|159042029|ref|YP_001541281.1| - 0.053 12.8 0.0 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|159042030|ref|YP_001541282.1| - 4.5e-10 39.4 0.0 7.1e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159042030|ref|YP_001541282.1| - 5.1e-05 23.1 0.1 0.2 11.4 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|159042030|ref|YP_001541282.1| - 0.0045 16.7 0.1 0.015 15.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|159042030|ref|YP_001541282.1| - 0.049 12.7 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Methyltransf_21 PF05050.7 gi|159042031|ref|YP_001541283.1| - 1.5e-17 64.0 0.0 2.4e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|159042031|ref|YP_001541283.1| - 3.6e-07 29.9 0.1 6e-07 29.2 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|159042031|ref|YP_001541283.1| - 1e-05 26.0 0.0 1.8e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|159042031|ref|YP_001541283.1| - 0.00049 19.6 0.0 0.00074 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Adap_comp_sub PF00928.16 gi|159042031|ref|YP_001541283.1| - 0.12 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Adaptor complexes medium subunit family Methyltransf_21 PF05050.7 gi|159042032|ref|YP_001541284.1| - 9.4e-25 87.4 0.0 1.3e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|159042032|ref|YP_001541284.1| - 3.4e-06 26.7 0.0 6.3e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|159042032|ref|YP_001541284.1| - 0.00078 19.9 0.0 0.0019 18.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|159042033|ref|YP_001541285.1| - 5e-31 107.4 0.0 1.5e-30 105.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042033|ref|YP_001541285.1| - 1.1e-14 54.6 0.1 6.1e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|159042033|ref|YP_001541285.1| - 2e-10 40.8 0.0 3.9e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|159042033|ref|YP_001541285.1| - 5.4e-05 22.9 0.1 0.00049 19.8 0.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|159042033|ref|YP_001541285.1| - 0.0022 18.1 0.1 0.0047 17.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|159042033|ref|YP_001541285.1| - 0.0033 17.2 0.1 0.037 13.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|159042034|ref|YP_001541286.1| - 1.1e-05 25.1 0.1 2.1e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 dTDP_sugar_isom PF00908.12 gi|159042035|ref|YP_001541287.1| - 5.7e-67 224.4 0.0 6.5e-67 224.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|159042035|ref|YP_001541287.1| - 0.071 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 WxcM-like, C-terminal Epimerase PF01370.16 gi|159042036|ref|YP_001541288.1| - 1.9e-35 122.4 0.0 2.3e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|159042036|ref|YP_001541288.1| - 9.9e-17 61.5 0.0 1.4e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|159042036|ref|YP_001541288.1| - 6.4e-16 57.8 0.0 7.9e-16 57.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|159042036|ref|YP_001541288.1| - 6.7e-13 48.1 0.0 1.3e-12 47.1 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|159042036|ref|YP_001541288.1| - 4.7e-07 29.2 0.0 7.3e-06 25.4 0.0 2.2 1 1 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|159042036|ref|YP_001541288.1| - 0.00028 19.8 0.1 0.13 11.1 0.1 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|159042036|ref|YP_001541288.1| - 0.002 17.1 0.1 0.067 12.1 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein NTP_transferase PF00483.18 gi|159042037|ref|YP_001541289.1| - 3.9e-37 127.8 0.0 4.7e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|159042037|ref|YP_001541289.1| - 9e-11 42.0 0.0 1.2e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Bactofilin PF04519.8 gi|159042037|ref|YP_001541289.1| - 0.0025 17.7 1.1 0.0036 17.2 0.3 1.5 2 0 0 2 2 2 1 Polymer-forming cytoskeletal Glycos_transf_2 PF00535.21 gi|159042037|ref|YP_001541289.1| - 0.0034 17.0 0.0 0.0059 16.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hexapep PF00132.19 gi|159042037|ref|YP_001541289.1| - 0.0047 16.3 3.9 0.014 14.8 0.0 3.4 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|159042037|ref|YP_001541289.1| - 0.0068 15.9 0.0 0.0099 15.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Lyase_8_N PF08124.6 gi|159042037|ref|YP_001541289.1| - 0.093 11.5 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain Polysacc_synt PF01943.12 gi|159042038|ref|YP_001541290.1| - 2e-06 27.2 32.5 2e-06 27.2 22.5 2.6 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein RGP PF03214.8 gi|159042038|ref|YP_001541290.1| - 0.027 13.2 0.3 0.05 12.3 0.1 1.5 1 1 0 1 1 1 0 Reversibly glycosylated polypeptide DUF1626 PF07788.6 gi|159042039|ref|YP_001541291.1| - 8.5e-29 99.1 1.8 8.5e-29 99.1 1.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|159042039|ref|YP_001541291.1| - 1.3e-25 88.9 9.9 4.6e-20 71.1 4.0 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF3782) rRNA_proc-arch PF13234.1 gi|159042039|ref|YP_001541291.1| - 0.027 13.6 0.3 0.036 13.2 0.2 1.2 1 0 0 1 1 1 0 rRNA-processing arch domain SlyX PF04102.7 gi|159042039|ref|YP_001541291.1| - 1.2 9.5 4.6 1.1 9.6 1.8 2.0 2 1 0 2 2 2 0 SlyX Oxidored_molyb PF00174.14 gi|159042042|ref|YP_001541294.1| - 3.3e-44 150.2 0.1 4.4e-44 149.8 0.1 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.4 gi|159042042|ref|YP_001541294.1| - 0.023 14.6 2.3 0.046 13.7 1.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Spo0A_C PF08769.6 gi|159042042|ref|YP_001541294.1| - 0.042 13.7 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 Sporulation initiation factor Spo0A C terminal CytB6-F_Fe-S PF08802.5 gi|159042042|ref|YP_001541294.1| - 0.076 13.0 0.6 0.18 11.8 0.4 1.6 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Ni_hydr_CYTB PF01292.15 gi|159042043|ref|YP_001541295.1| - 0.037 13.4 6.8 0.022 14.1 3.5 1.6 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF1691 PF07950.6 gi|159042043|ref|YP_001541295.1| - 0.07 13.0 0.6 0.2 11.6 0.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1691) DrsE PF02635.10 gi|159042044|ref|YP_001541296.1| - 0.0049 16.9 0.0 0.0054 16.7 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family Parvo_coat_N PF08398.5 gi|159042044|ref|YP_001541296.1| - 0.066 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Parvovirus coat protein VP1 Copper-bind PF00127.15 gi|159042045|ref|YP_001541297.1| - 1.4e-06 28.4 0.0 3.7e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_3 PF07732.10 gi|159042045|ref|YP_001541297.1| - 0.00047 19.8 1.3 0.002 17.8 0.4 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu_bind_like PF02298.12 gi|159042045|ref|YP_001541297.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Plastocyanin-like domain DUF2269 PF10027.4 gi|159042046|ref|YP_001541298.1| - 0.017 14.8 3.3 0.019 14.7 2.3 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF1517 PF07466.6 gi|159042046|ref|YP_001541298.1| - 0.03 13.3 0.1 0.032 13.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) ODV-E18 PF10717.4 gi|159042046|ref|YP_001541298.1| - 0.033 13.6 0.1 0.04 13.3 0.0 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Plant_vir_prot PF01307.12 gi|159042046|ref|YP_001541298.1| - 0.055 13.2 0.5 0.075 12.7 0.3 1.2 1 0 0 1 1 1 0 Plant viral movement protein DUF4083 PF13314.1 gi|159042046|ref|YP_001541298.1| - 0.071 12.9 0.7 0.089 12.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF2227 PF09988.4 gi|159042046|ref|YP_001541298.1| - 0.084 12.5 1.6 0.089 12.4 1.1 1.1 1 0 0 1 1 1 0 Uncharacterized metal-binding protein (DUF2227) HemY_N PF07219.8 gi|159042046|ref|YP_001541298.1| - 0.099 12.2 1.5 0.11 12.0 1.1 1.1 1 0 0 1 1 1 0 HemY protein N-terminus GP41 PF00517.12 gi|159042046|ref|YP_001541298.1| - 1.1 8.8 3.0 1.1 8.8 2.1 1.0 1 0 0 1 1 1 0 Retroviral envelope protein DUF2873 PF11395.3 gi|159042046|ref|YP_001541298.1| - 5.5 6.6 10.3 7.7 6.1 7.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) P12 PF12669.2 gi|159042046|ref|YP_001541298.1| - 7.5 6.8 6.8 24 5.2 4.7 1.9 1 1 0 1 1 1 0 Virus attachment protein p12 family MarR_2 PF12802.2 gi|159042047|ref|YP_001541299.1| - 9.3e-10 38.0 0.1 1.9e-09 37.0 0.0 1.6 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|159042047|ref|YP_001541299.1| - 7.5e-06 25.5 0.4 1.4e-05 24.6 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|159042047|ref|YP_001541299.1| - 6.3e-05 22.2 0.1 0.00018 20.8 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|159042047|ref|YP_001541299.1| - 0.00028 20.5 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|159042047|ref|YP_001541299.1| - 0.00043 19.8 0.1 0.00071 19.1 0.1 1.3 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|159042047|ref|YP_001541299.1| - 0.01 15.7 0.2 0.019 14.8 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RhoGAP PF00620.22 gi|159042047|ref|YP_001541299.1| - 0.022 14.3 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 RhoGAP domain DUF2250 PF10007.4 gi|159042047|ref|YP_001541299.1| - 0.034 14.0 0.1 0.057 13.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.1 gi|159042047|ref|YP_001541299.1| - 0.038 14.1 0.1 0.085 12.9 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|159042047|ref|YP_001541299.1| - 0.056 12.9 0.5 0.084 12.3 0.3 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|159042047|ref|YP_001541299.1| - 0.065 13.0 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF603 PF04645.7 gi|159042047|ref|YP_001541299.1| - 0.091 12.6 0.4 0.13 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF603 HTH_28 PF13518.1 gi|159042047|ref|YP_001541299.1| - 0.11 12.5 0.3 0.17 11.9 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|159042047|ref|YP_001541299.1| - 0.11 12.5 0.1 0.3 11.1 0.1 1.6 2 0 0 2 2 2 0 Penicillinase repressor HTH_IclR PF09339.5 gi|159042047|ref|YP_001541299.1| - 0.13 11.9 0.1 0.28 10.7 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|159042047|ref|YP_001541299.1| - 0.15 11.3 0.8 0.26 10.6 0.5 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF973 PF06157.6 gi|159042047|ref|YP_001541299.1| - 1.2 8.0 7.2 1.8 7.4 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF872 PF05915.7 gi|159042047|ref|YP_001541299.1| - 2 8.2 10.7 7.3 6.4 3.5 2.2 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Arch_ATPase PF01637.13 gi|159042048|ref|YP_001541300.1| - 1.5e-29 103.3 0.2 1.9e-29 103.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|159042048|ref|YP_001541300.1| - 2.7e-09 36.9 0.2 1.1e-07 31.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|159042048|ref|YP_001541300.1| - 1.5e-08 34.8 0.1 3.8e-08 33.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain HTH_20 PF12840.2 gi|159042050|ref|YP_001541302.1| - 2.8e-11 43.0 0.2 4.2e-11 42.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|159042050|ref|YP_001541302.1| - 1.9e-09 37.0 0.6 3.1e-09 36.3 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|159042050|ref|YP_001541302.1| - 1.2e-08 34.4 0.3 1.8e-08 33.8 0.2 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|159042050|ref|YP_001541302.1| - 3.5e-07 29.8 0.1 5.7e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|159042050|ref|YP_001541302.1| - 3.8e-06 26.1 0.3 7.3e-06 25.2 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|159042050|ref|YP_001541302.1| - 2.3e-05 24.3 0.3 3.6e-05 23.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|159042050|ref|YP_001541302.1| - 0.00016 21.2 0.1 0.00022 20.8 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|159042050|ref|YP_001541302.1| - 0.00042 20.3 0.2 0.00067 19.7 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|159042050|ref|YP_001541302.1| - 0.00097 18.6 0.1 0.0015 18.0 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|159042050|ref|YP_001541302.1| - 0.0026 17.2 0.2 0.0047 16.4 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_CodY PF08222.6 gi|159042050|ref|YP_001541302.1| - 0.0027 17.0 0.2 0.0044 16.3 0.1 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_11 PF08279.7 gi|159042050|ref|YP_001541302.1| - 0.0036 16.8 0.3 0.0059 16.2 0.2 1.3 1 0 0 1 1 1 1 HTH domain Sulfolobus_pRN PF05584.6 gi|159042050|ref|YP_001541302.1| - 0.0043 16.9 0.1 0.0078 16.1 0.1 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Fe_dep_repress PF01325.14 gi|159042050|ref|YP_001541302.1| - 0.014 15.3 0.1 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.6 gi|159042050|ref|YP_001541302.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain FaeA PF04703.7 gi|159042050|ref|YP_001541302.1| - 0.017 15.2 0.1 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.12 gi|159042050|ref|YP_001541302.1| - 0.017 14.5 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|159042050|ref|YP_001541302.1| - 0.08 12.7 0.1 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|159042050|ref|YP_001541302.1| - 0.11 12.0 0.1 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2250 PF10007.4 gi|159042050|ref|YP_001541302.1| - 0.12 12.2 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Seryl_tRNA_N PF02403.17 gi|159042051|ref|YP_001541303.1| - 0.0016 18.4 3.4 0.002 18.1 2.4 1.1 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Halogen_Hydrol PF10112.4 gi|159042051|ref|YP_001541303.1| - 0.0021 17.5 0.3 0.0026 17.1 0.2 1.1 1 0 0 1 1 1 1 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4446 PF14584.1 gi|159042051|ref|YP_001541303.1| - 0.014 15.2 1.0 0.02 14.7 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) IncA PF04156.9 gi|159042051|ref|YP_001541303.1| - 0.019 14.5 6.4 0.03 13.9 4.5 1.3 1 1 0 1 1 1 0 IncA protein DUF3450 PF11932.3 gi|159042051|ref|YP_001541303.1| - 0.039 13.2 0.0 0.041 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4367 PF14285.1 gi|159042051|ref|YP_001541303.1| - 0.045 13.0 0.3 0.052 12.8 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4367) SpoIISA_toxin PF14171.1 gi|159042051|ref|YP_001541303.1| - 0.069 12.3 0.1 0.08 12.1 0.1 1.0 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system SlyX PF04102.7 gi|159042051|ref|YP_001541303.1| - 0.075 13.4 1.2 0.099 13.0 0.8 1.2 1 0 0 1 1 1 0 SlyX Med9 PF07544.8 gi|159042051|ref|YP_001541303.1| - 0.094 12.4 4.8 0.25 11.1 3.5 1.6 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.15 gi|159042051|ref|YP_001541303.1| - 0.13 12.0 4.1 0.15 11.8 2.8 1.1 1 0 0 1 1 1 0 Prefoldin subunit DivIC PF04977.10 gi|159042051|ref|YP_001541303.1| - 0.16 11.5 3.7 1.3 8.5 2.6 2.1 1 1 0 1 1 1 0 Septum formation initiator DUF2681 PF10883.3 gi|159042051|ref|YP_001541303.1| - 0.26 11.4 1.4 0.5 10.6 1.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2681) DUF948 PF06103.6 gi|159042051|ref|YP_001541303.1| - 0.83 9.5 3.4 4.3 7.2 2.3 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) IFP_35_N PF07334.8 gi|159042051|ref|YP_001541303.1| - 6.4 6.8 7.5 6.4 6.8 4.6 1.5 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus PspB PF06667.7 gi|159042051|ref|YP_001541303.1| - 9.5 6.2 10.8 34 4.4 7.5 2.0 1 1 0 1 1 1 0 Phage shock protein B DUF4098 PF13345.1 gi|159042052|ref|YP_001541304.1| - 0.0097 15.8 6.3 0.0097 15.8 4.4 3.7 2 2 1 3 3 3 1 Domain of unknown function (DUF4098) DLH PF01738.13 gi|159042053|ref|YP_001541305.1| - 6.9e-56 188.9 0.0 6.5e-55 185.7 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|159042053|ref|YP_001541305.1| - 4.5e-11 42.6 0.0 6.8e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|159042053|ref|YP_001541305.1| - 2.5e-06 27.5 0.0 0.022 14.6 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|159042053|ref|YP_001541305.1| - 2e-05 24.3 0.3 0.001 18.8 0.1 2.5 2 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.16 gi|159042053|ref|YP_001541305.1| - 0.048 12.8 0.0 0.16 11.1 0.0 1.8 1 1 1 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|159042053|ref|YP_001541305.1| - 0.15 11.5 0.0 0.59 9.6 0.0 1.9 1 1 1 2 2 2 0 alpha/beta hydrolase fold AA_permease_2 PF13520.1 gi|159042054|ref|YP_001541306.1| - 2.1e-39 135.2 46.8 3.9e-39 134.3 32.5 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159042054|ref|YP_001541306.1| - 2e-20 72.5 46.4 5.4e-20 71.1 32.2 1.6 1 1 0 1 1 1 1 Amino acid permease AcetylCoA_hyd_C PF13336.1 gi|159042054|ref|YP_001541306.1| - 0.024 14.3 0.1 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Acetyl-CoA hydrolase/transferase C-terminal domain SBP_bac_5 PF00496.17 gi|159042056|ref|YP_001541308.1| - 6.9e-35 120.5 6.3 2.3e-34 118.8 4.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle GFO_IDH_MocA PF01408.17 gi|159042057|ref|YP_001541309.1| - 6e-27 94.5 0.1 9.4e-27 93.9 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159042057|ref|YP_001541309.1| - 2.5e-07 30.5 0.0 4.6e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|159042057|ref|YP_001541309.1| - 5.3e-06 25.9 0.0 1.1e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 Putative oxidoreductase C terminal NAD_binding_2 PF03446.10 gi|159042057|ref|YP_001541309.1| - 0.00093 19.0 0.1 0.0015 18.4 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|159042057|ref|YP_001541309.1| - 0.0019 18.6 0.1 0.0036 17.6 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.14 gi|159042057|ref|YP_001541309.1| - 0.0019 18.6 0.9 0.0046 17.4 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain NAD_binding_3 PF03447.11 gi|159042057|ref|YP_001541309.1| - 0.0055 17.0 0.5 0.01 16.1 0.4 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|159042057|ref|YP_001541309.1| - 0.023 13.8 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|159042057|ref|YP_001541309.1| - 0.033 13.7 0.1 0.05 13.1 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|159042057|ref|YP_001541309.1| - 0.064 13.2 0.1 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain AP_endonuc_2 PF01261.19 gi|159042058|ref|YP_001541310.1| - 3e-32 111.6 0.0 5.3e-32 110.8 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel GFO_IDH_MocA PF01408.17 gi|159042059|ref|YP_001541311.1| - 1.9e-22 80.0 0.0 2.9e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|159042059|ref|YP_001541311.1| - 3.7e-10 39.6 0.0 7.4e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|159042059|ref|YP_001541311.1| - 0.042 14.2 0.0 0.079 13.3 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ox_reductase_C PF08635.5 gi|159042059|ref|YP_001541311.1| - 0.063 12.7 0.0 0.26 10.7 0.0 2.0 1 1 0 1 1 1 0 Putative oxidoreductase C terminal AP_endonuc_2 PF01261.19 gi|159042060|ref|YP_001541312.1| - 3.3e-21 75.5 0.0 4.9e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|159042060|ref|YP_001541312.1| - 0.00067 19.1 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus PepX_C PF08530.5 gi|159042061|ref|YP_001541313.1| - 1.3e-33 116.7 0.0 1.9e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S15 PF02129.13 gi|159042061|ref|YP_001541313.1| - 1.6e-28 99.9 0.0 2.3e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|159042061|ref|YP_001541313.1| - 0.016 15.1 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|159042061|ref|YP_001541313.1| - 0.029 13.5 0.0 0.057 12.6 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family Nramp PF01566.13 gi|159042062|ref|YP_001541314.1| - 9.5e-37 126.6 21.0 1.2e-36 126.2 14.6 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein L51_S25_CI-B8 PF05047.11 gi|159042062|ref|YP_001541314.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain MitoNEET_N PF10660.4 gi|159042063|ref|YP_001541315.1| - 0.036 13.9 0.1 0.036 13.9 0.1 2.8 4 0 0 4 4 4 0 Iron-containing outer mitochondrial membrane protein N-terminus Cas_Cas4 PF01930.12 gi|159042064|ref|YP_001541316.1| - 5.1e-07 29.7 0.0 6.1e-07 29.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|159042064|ref|YP_001541316.1| - 1.8e-05 24.2 0.0 2.1e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|159042064|ref|YP_001541316.1| - 0.00089 18.5 0.0 0.0011 18.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) DUF2276 PF10040.4 gi|159042065|ref|YP_001541317.1| - 1.1e-28 99.8 0.0 1.9e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Pyr_redox_2 PF07992.9 gi|159042066|ref|YP_001541318.1| - 4.2e-35 121.4 2.0 7.5e-33 114.1 1.4 3.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|159042066|ref|YP_001541318.1| - 2.3e-31 108.0 0.5 3.8e-31 107.3 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|159042066|ref|YP_001541318.1| - 2.6e-10 40.5 0.7 2.6e-10 40.5 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159042066|ref|YP_001541318.1| - 3.3e-06 26.2 3.9 0.0031 16.4 0.2 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|159042066|ref|YP_001541318.1| - 8.9e-06 25.9 0.3 0.023 14.7 0.2 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|159042066|ref|YP_001541318.1| - 7e-05 21.4 0.6 0.029 12.8 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.19 gi|159042066|ref|YP_001541318.1| - 0.00037 19.5 5.8 0.00042 19.3 0.1 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|159042066|ref|YP_001541318.1| - 0.08 12.0 0.1 0.58 9.1 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|159042066|ref|YP_001541318.1| - 0.12 11.4 0.3 0.23 10.5 0.2 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.19 gi|159042066|ref|YP_001541318.1| - 0.26 10.0 4.4 3 6.5 0.3 2.8 2 1 1 3 3 3 0 FAD binding domain zf-FCS PF06467.9 gi|159042067|ref|YP_001541319.1| - 1.4e-06 27.8 0.9 1.8e-06 27.5 0.6 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|159042067|ref|YP_001541319.1| - 7.2e-06 25.7 0.1 1.1e-05 25.1 0.1 1.3 1 0 0 1 1 1 1 YHS domain ATPase-cat_bd PF12156.3 gi|159042067|ref|YP_001541319.1| - 9.1e-05 22.9 3.2 0.00011 22.7 2.2 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase zf-FPG_IleRS PF06827.9 gi|159042067|ref|YP_001541319.1| - 0.00012 21.6 6.3 0.0025 17.3 4.4 2.2 1 1 0 1 1 1 1 Zinc finger found in FPG and IleRS Metallothio_Pro PF02069.11 gi|159042067|ref|YP_001541319.1| - 0.00025 20.7 0.9 0.00033 20.3 0.6 1.2 1 0 0 1 1 1 1 Prokaryotic metallothionein Ta0938 PF11494.3 gi|159042067|ref|YP_001541319.1| - 0.0011 19.0 0.1 0.0011 19.0 0.1 1.1 1 0 0 1 1 1 1 Ta0938 Arc_trans_TRASH PF08394.5 gi|159042067|ref|YP_001541319.1| - 0.0046 17.0 1.8 0.0067 16.5 1.3 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain Zn_ribbon_recom PF13408.1 gi|159042067|ref|YP_001541319.1| - 0.0093 16.2 2.2 0.012 15.8 1.5 1.2 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|159042067|ref|YP_001541319.1| - 0.02 14.6 1.1 0.035 13.8 0.8 1.4 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn_ribbon_2 PF12674.2 gi|159042067|ref|YP_001541319.1| - 0.027 14.8 0.8 0.033 14.5 0.6 1.1 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-H2C2_2 PF13465.1 gi|159042067|ref|YP_001541319.1| - 0.034 14.4 1.3 0.2 12.0 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DUF2116 PF09889.4 gi|159042067|ref|YP_001541319.1| - 0.035 13.8 1.5 2.8 7.8 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) LIM PF00412.17 gi|159042067|ref|YP_001541319.1| - 0.089 12.8 3.4 0.22 11.6 2.4 1.6 1 1 0 1 1 1 0 LIM domain DUF3330 PF11809.3 gi|159042067|ref|YP_001541319.1| - 0.14 12.0 3.6 0.21 11.4 2.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3330) Terminase_GpA PF05876.7 gi|159042067|ref|YP_001541319.1| - 0.15 10.4 1.4 0.17 10.2 1.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) HypA PF01155.14 gi|159042067|ref|YP_001541319.1| - 0.17 11.5 2.3 0.31 10.7 1.6 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|159042067|ref|YP_001541319.1| - 0.2 11.5 4.8 0.35 10.7 3.3 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain CpXC PF14353.1 gi|159042067|ref|YP_001541319.1| - 0.64 9.9 4.5 2.7 7.9 0.7 2.0 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|159042067|ref|YP_001541319.1| - 0.66 9.9 5.1 17 5.4 2.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF1451 PF07295.6 gi|159042067|ref|YP_001541319.1| - 1.2 8.8 3.9 2.3 8.0 2.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) zf-C3HC4_3 PF13920.1 gi|159042067|ref|YP_001541319.1| - 2.3 7.9 6.7 8 6.2 4.6 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RPAP2_Rtr1 PF04181.8 gi|159042067|ref|YP_001541319.1| - 4.8 7.3 6.4 13 5.9 4.4 1.7 1 1 0 1 1 1 0 Rtr1/RPAP2 family AhpC-TSA PF00578.16 gi|159042069|ref|YP_001541321.1| - 1.5e-05 24.6 0.0 5.8e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|159042069|ref|YP_001541321.1| - 0.00072 19.1 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|159042069|ref|YP_001541321.1| - 0.003 17.6 0.1 0.0056 16.7 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|159042069|ref|YP_001541321.1| - 0.043 13.4 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin Thioredoxin_2 PF13098.1 gi|159042069|ref|YP_001541321.1| - 0.18 12.0 0.2 0.62 10.2 0.2 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain HTH_5 PF01022.15 gi|159042070|ref|YP_001541322.1| - 2.6e-14 52.6 1.0 4.5e-14 51.8 0.7 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|159042070|ref|YP_001541322.1| - 4.6e-08 32.7 0.1 7.4e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|159042070|ref|YP_001541322.1| - 6.5e-08 32.1 0.0 1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|159042070|ref|YP_001541322.1| - 0.00043 19.7 0.1 0.00097 18.6 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|159042070|ref|YP_001541322.1| - 0.00046 20.1 0.0 0.00068 19.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|159042070|ref|YP_001541322.1| - 0.0015 18.3 0.9 0.0026 17.5 0.3 1.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_11 PF08279.7 gi|159042070|ref|YP_001541322.1| - 0.0017 17.9 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain KorB PF08535.5 gi|159042070|ref|YP_001541322.1| - 0.0027 17.8 0.0 0.0047 17.0 0.0 1.3 1 0 0 1 1 1 1 KorB domain MarR_2 PF12802.2 gi|159042070|ref|YP_001541322.1| - 0.0041 16.7 0.1 0.0065 16.1 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|159042070|ref|YP_001541322.1| - 0.0087 15.5 0.0 0.016 14.7 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|159042070|ref|YP_001541322.1| - 0.0097 16.0 0.1 0.015 15.4 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|159042070|ref|YP_001541322.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|159042070|ref|YP_001541322.1| - 0.014 14.7 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|159042070|ref|YP_001541322.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_41 PF14502.1 gi|159042070|ref|YP_001541322.1| - 0.026 14.1 0.1 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|159042070|ref|YP_001541322.1| - 0.03 14.3 0.2 0.095 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|159042070|ref|YP_001541322.1| - 0.032 14.3 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.1 gi|159042070|ref|YP_001541322.1| - 0.047 13.8 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix PaaX PF07848.7 gi|159042070|ref|YP_001541322.1| - 0.078 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.17 gi|159042070|ref|YP_001541322.1| - 0.085 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 MarR family GED PF02212.13 gi|159042070|ref|YP_001541322.1| - 0.15 11.9 0.3 1.6 8.7 0.1 2.0 2 0 0 2 2 2 0 Dynamin GTPase effector domain Ank_3 PF13606.1 gi|159042070|ref|YP_001541322.1| - 0.27 11.5 1.1 4.9 7.6 0.0 2.9 3 1 1 4 4 4 0 Ankyrin repeat Cas_APE2256 PF09651.5 gi|159042071|ref|YP_001541323.1| - 6.5e-41 139.2 0.0 1.1e-40 138.4 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Pollen_allerg_2 PF01620.11 gi|159042071|ref|YP_001541323.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease (pollen allergen) Cas_DxTHG PF09455.5 gi|159042072|ref|YP_001541324.1| - 1.6e-24 86.8 17.2 9.4e-24 84.2 11.9 2.0 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family NurA PF09376.5 gi|159042073|ref|YP_001541325.1| - 5.5e-07 29.3 0.0 1.6e-06 27.8 0.0 1.8 1 1 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|159042074|ref|YP_001541326.1| - 9.2e-24 84.4 0.7 2e-22 79.9 0.5 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|159042074|ref|YP_001541326.1| - 5e-11 42.8 2.4 5.5e-10 39.4 1.6 2.2 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|159042074|ref|YP_001541326.1| - 2e-10 39.6 0.2 1.5e-06 26.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|159042074|ref|YP_001541326.1| - 4.4e-10 39.3 0.4 6.9e-06 25.6 0.0 2.5 2 1 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|159042074|ref|YP_001541326.1| - 5.3e-07 29.8 0.1 0.00042 20.5 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|159042074|ref|YP_001541326.1| - 7.4e-07 29.3 0.0 0.0092 16.1 0.0 3.0 2 1 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.4 gi|159042074|ref|YP_001541326.1| - 3e-06 26.1 0.0 1.9e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|159042074|ref|YP_001541326.1| - 1.7e-05 23.8 0.1 7.2e-05 21.8 0.0 2.0 2 1 0 2 2 2 1 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|159042074|ref|YP_001541326.1| - 3.2e-05 23.1 0.0 7.8e-05 21.8 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin DEAD PF00270.24 gi|159042074|ref|YP_001541326.1| - 6.1e-05 22.5 0.1 0.03 13.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Zot PF05707.7 gi|159042074|ref|YP_001541326.1| - 7.9e-05 22.2 0.0 0.0014 18.1 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) Arch_ATPase PF01637.13 gi|159042074|ref|YP_001541326.1| - 8.9e-05 22.3 1.1 0.11 12.1 0.1 3.5 3 1 0 3 3 3 1 Archaeal ATPase DUF2075 PF09848.4 gi|159042074|ref|YP_001541326.1| - 0.00018 20.6 0.0 0.12 11.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|159042074|ref|YP_001541326.1| - 0.00027 20.4 0.0 0.71 9.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain ResIII PF04851.10 gi|159042074|ref|YP_001541326.1| - 0.00057 19.7 0.0 0.038 13.8 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|159042074|ref|YP_001541326.1| - 0.00069 19.3 0.0 0.0018 18.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|159042074|ref|YP_001541326.1| - 0.0024 17.3 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|159042074|ref|YP_001541326.1| - 0.0039 16.9 0.2 0.011 15.4 0.2 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Pox_A32 PF04665.7 gi|159042074|ref|YP_001541326.1| - 0.0061 15.8 0.0 0.023 14.0 0.0 2.0 2 0 0 2 2 2 1 Poxvirus A32 protein NACHT PF05729.7 gi|159042074|ref|YP_001541326.1| - 0.0092 15.6 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Miro PF08477.8 gi|159042074|ref|YP_001541326.1| - 0.011 16.2 0.0 1.4 9.3 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein AAA_18 PF13238.1 gi|159042074|ref|YP_001541326.1| - 0.016 15.5 0.2 0.13 12.5 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|159042074|ref|YP_001541326.1| - 0.016 15.1 0.0 0.11 12.4 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|159042074|ref|YP_001541326.1| - 0.016 16.0 0.3 0.11 13.2 0.2 2.5 1 1 0 1 1 1 0 AAA domain Tol_Tol_Ttg2 PF05494.7 gi|159042074|ref|YP_001541326.1| - 0.018 14.6 0.3 0.048 13.2 0.2 1.8 1 1 0 1 1 1 0 Toluene tolerance, Ttg2 AAA_33 PF13671.1 gi|159042074|ref|YP_001541326.1| - 0.021 14.6 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF1985 PF09331.6 gi|159042074|ref|YP_001541326.1| - 0.021 14.6 0.0 0.055 13.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1985) PhoH PF02562.11 gi|159042074|ref|YP_001541326.1| - 0.036 13.2 0.0 0.18 10.9 0.0 2.2 2 1 1 3 3 3 0 PhoH-like protein HTH_Tnp_4 PF13613.1 gi|159042074|ref|YP_001541326.1| - 0.054 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease cobW PF02492.14 gi|159042074|ref|YP_001541326.1| - 0.066 12.6 0.1 0.19 11.1 0.0 1.8 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain HTH_28 PF13518.1 gi|159042074|ref|YP_001541326.1| - 0.087 12.8 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Mg_chelatase PF01078.16 gi|159042074|ref|YP_001541326.1| - 0.13 11.4 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|159042074|ref|YP_001541326.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UvrD-helicase PF00580.16 gi|159042074|ref|YP_001541326.1| - 0.16 11.2 0.2 0.48 9.6 0.0 1.8 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain Cas_APE2256 PF09651.5 gi|159042075|ref|YP_001541327.1| - 5.3e-27 94.1 0.0 6.8e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) RAMPs PF03787.10 gi|159042076|ref|YP_001541328.1| - 3.9e-08 33.4 0.0 9.5e-07 28.8 0.0 2.5 1 1 0 1 1 1 1 RAMP superfamily CRISPR_assoc PF08798.6 gi|159042076|ref|YP_001541328.1| - 0.021 14.5 0.0 0.048 13.4 0.0 1.5 2 0 0 2 2 2 0 CRISPR associated protein RAMPs PF03787.10 gi|159042077|ref|YP_001541329.1| - 2.3e-07 30.8 0.0 1.1e-06 28.6 0.0 2.0 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.5 gi|159042078|ref|YP_001541330.1| - 1.4e-08 34.9 0.3 1.1e-07 31.9 0.2 1.9 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) NAD_binding_6 PF08030.7 gi|159042078|ref|YP_001541330.1| - 0.059 13.2 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 Ferric reductase NAD binding domain RAMPs PF03787.10 gi|159042079|ref|YP_001541331.1| - 5e-22 78.7 0.0 9.6e-22 77.8 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RNA_Me_trans PF04252.8 gi|159042079|ref|YP_001541331.1| - 0.0013 18.1 0.3 0.0023 17.3 0.2 1.3 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase FliD_N PF02465.13 gi|159042079|ref|YP_001541331.1| - 0.064 13.6 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus DUF3692 PF12469.3 gi|159042080|ref|YP_001541332.1| - 1.1e-32 112.6 1.4 4e-32 110.8 0.0 2.8 3 1 0 3 3 3 1 CRISPR-associated protein AAA_23 PF13476.1 gi|159042080|ref|YP_001541332.1| - 1.7 8.9 14.9 0.058 13.7 0.8 3.2 3 0 0 3 3 3 0 AAA domain Cas_Cmr3 PF09700.5 gi|159042081|ref|YP_001541333.1| - 7.2e-12 45.3 0.0 6.9e-08 32.2 0.0 2.1 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) Penicillinase_R PF03965.11 gi|159042082|ref|YP_001541334.1| - 5.7e-08 32.8 0.1 1.2e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|159042082|ref|YP_001541334.1| - 0.025 14.2 0.2 0.069 12.8 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MMR_HSR1_C PF08438.5 gi|159042082|ref|YP_001541334.1| - 0.059 13.6 0.1 0.18 12.0 0.0 1.8 2 0 0 2 2 2 0 GTPase of unknown function C-terminal LexA_DNA_bind PF01726.11 gi|159042082|ref|YP_001541334.1| - 0.075 12.5 0.0 0.21 11.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain DUF2764 PF10962.3 gi|159042083|ref|YP_001541335.1| - 0.1 11.7 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2764) DevR PF01905.11 gi|159042084|ref|YP_001541336.1| - 1.1e-87 293.2 0.2 1.4e-87 292.9 0.2 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Hph PF13694.1 gi|159042086|ref|YP_001541338.1| - 0.054 13.5 0.4 0.086 12.8 0.3 1.2 1 0 0 1 1 1 0 Sec63/Sec62 complex-interacting family DEAD PF00270.24 gi|159042087|ref|YP_001541339.1| - 7.4e-09 35.3 0.6 6.1e-07 29.0 0.1 3.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|159042087|ref|YP_001541339.1| - 3.5e-06 26.7 0.2 1.7e-05 24.5 0.1 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|159042087|ref|YP_001541339.1| - 1.5e-05 24.9 0.0 3.9e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Alpha-L-AF_C PF06964.7 gi|159042087|ref|YP_001541339.1| - 0.0033 17.2 0.0 0.0045 16.7 0.0 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus HD PF01966.17 gi|159042088|ref|YP_001541340.1| - 0.0012 18.8 1.0 0.0032 17.4 0.7 1.9 1 1 0 1 1 1 1 HD domain Imm14 PF15428.1 gi|159042088|ref|YP_001541340.1| - 0.0059 17.0 3.2 0.2 12.0 0.2 2.2 2 0 0 2 2 2 2 Immunity protein 14 RanGAP1_C PF07834.6 gi|159042088|ref|YP_001541340.1| - 0.015 14.7 0.3 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 RanGAP1 C-terminal domain DUF766 PF05571.7 gi|159042088|ref|YP_001541340.1| - 0.045 13.0 0.0 0.078 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF766) Gemini_AL1 PF00799.15 gi|159042088|ref|YP_001541340.1| - 0.1 12.4 0.2 0.38 10.6 0.0 1.9 2 0 0 2 2 2 0 Geminivirus Rep catalytic domain CTP_transf_2 PF01467.21 gi|159042089|ref|YP_001541341.1| - 1.6e-09 38.0 0.0 3.9e-09 36.7 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase LSM PF01423.17 gi|159042090|ref|YP_001541342.1| - 3.3e-21 74.5 0.2 4e-21 74.3 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|159042090|ref|YP_001541342.1| - 0.00013 21.7 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain ATP_bind_4 PF01902.12 gi|159042091|ref|YP_001541343.1| - 1.1e-58 198.1 0.0 1.3e-58 197.9 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|159042091|ref|YP_001541343.1| - 0.0073 15.6 0.0 0.024 13.9 0.0 1.9 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|159042091|ref|YP_001541343.1| - 0.012 15.0 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.9 gi|159042091|ref|YP_001541343.1| - 0.14 11.6 0.0 0.5 9.7 0.0 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) GTP_EFTU PF00009.22 gi|159042092|ref|YP_001541344.1| - 2e-34 118.6 0.0 3.8e-34 117.7 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|159042092|ref|YP_001541344.1| - 4.1e-18 65.2 0.2 7.9e-18 64.2 0.1 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|159042092|ref|YP_001541344.1| - 2.7e-08 33.7 1.5 8.2e-08 32.2 1.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 SRPRB PF09439.5 gi|159042092|ref|YP_001541344.1| - 0.018 14.2 0.0 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|159042092|ref|YP_001541344.1| - 0.022 14.2 0.1 1 8.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NUDIX PF00293.23 gi|159042093|ref|YP_001541345.1| - 1.8e-24 85.9 0.0 2e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain tRNA-synt_1c PF00749.16 gi|159042094|ref|YP_001541346.1| - 2.7e-64 216.8 0.0 3.4e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|159042094|ref|YP_001541346.1| - 4.9e-27 94.6 0.0 9e-27 93.8 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1e PF01406.14 gi|159042094|ref|YP_001541346.1| - 0.077 12.0 0.1 9.4 5.2 0.0 2.7 2 1 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain VARLMGL PF14383.1 gi|159042094|ref|YP_001541346.1| - 0.32 10.2 1.5 0.81 8.9 1.0 1.6 1 0 0 1 1 1 0 DUF761-associated sequence motif TGT_C2 PF14810.1 gi|159042095|ref|YP_001541347.1| - 7.5e-12 44.9 0.0 1.1e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|159042095|ref|YP_001541347.1| - 2.1e-10 40.1 0.6 4.2e-10 39.2 0.4 1.5 1 0 0 1 1 1 1 PUA domain TruB-C_2 PF09157.6 gi|159042095|ref|YP_001541347.1| - 0.023 14.5 0.1 0.051 13.4 0.1 1.6 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal HTH_15 PF12324.3 gi|159042095|ref|YP_001541347.1| - 0.079 12.6 1.2 0.16 11.6 0.8 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase PCMT PF01135.14 gi|159042097|ref|YP_001541349.1| - 7.5e-57 192.2 0.0 8.9e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|159042097|ref|YP_001541349.1| - 2.6e-07 31.2 0.0 4.6e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159042097|ref|YP_001541349.1| - 2.3e-06 27.6 0.1 3.7e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|159042097|ref|YP_001541349.1| - 4.7e-06 25.7 0.0 5.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_31 PF13847.1 gi|159042097|ref|YP_001541349.1| - 5.3e-06 26.0 0.0 8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|159042097|ref|YP_001541349.1| - 6.8e-06 25.8 0.0 9.8e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|159042097|ref|YP_001541349.1| - 0.00057 19.2 0.0 0.0009 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|159042097|ref|YP_001541349.1| - 0.0026 18.2 0.0 0.0062 16.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159042097|ref|YP_001541349.1| - 0.015 15.0 0.0 0.043 13.5 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|159042097|ref|YP_001541349.1| - 0.015 16.1 0.0 0.026 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|159042097|ref|YP_001541349.1| - 0.083 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|159042097|ref|YP_001541349.1| - 0.084 11.5 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_12 PF08242.7 gi|159042097|ref|YP_001541349.1| - 0.096 13.1 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|159042097|ref|YP_001541349.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Glyco_hydro_1 PF00232.13 gi|159042098|ref|YP_001541350.1| - 5.1e-72 242.5 0.0 2.2e-48 164.6 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|159042098|ref|YP_001541350.1| - 6.2e-08 32.1 0.3 8e-06 25.2 0.0 2.1 2 0 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) RNA_pol_L_2 PF13656.1 gi|159042100|ref|YP_001541352.1| - 1.3e-22 79.0 0.0 1.5e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|159042100|ref|YP_001541352.1| - 0.00035 19.6 0.0 0.00044 19.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Urocanase PF01175.13 gi|159042102|ref|YP_001541354.1| - 6.4e-234 777.0 0.0 7.4e-234 776.8 0.0 1.0 1 0 0 1 1 1 1 Urocanase MFS_1 PF07690.11 gi|159042103|ref|YP_001541355.1| - 4.6e-21 74.9 49.6 4.6e-21 74.9 34.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159042103|ref|YP_001541355.1| - 1.1e-19 70.3 34.6 4.4e-19 68.3 11.0 2.9 1 1 1 3 3 3 3 Sugar (and other) transporter Arginase PF00491.16 gi|159042104|ref|YP_001541356.1| - 1.1e-61 208.5 0.0 1.3e-61 208.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family Lyase_aromatic PF00221.14 gi|159042105|ref|YP_001541357.1| - 8.6e-141 469.6 1.7 1.1e-140 469.2 1.2 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_4 PF13147.1 gi|159042106|ref|YP_001541358.1| - 1.7e-16 61.1 0.0 6.4e-16 59.1 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|159042106|ref|YP_001541358.1| - 2.4e-14 53.3 0.0 6.5e-10 38.7 0.0 2.5 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.15 gi|159042106|ref|YP_001541358.1| - 2.4e-14 53.7 0.0 4.9e-14 52.7 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|159042106|ref|YP_001541358.1| - 1.4e-06 28.0 0.0 3.4e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase PNP_UDP_1 PF01048.15 gi|159042107|ref|YP_001541359.1| - 2.8e-33 114.8 0.9 3.1e-33 114.6 0.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Prok-RING_1 PF14446.1 gi|159042108|ref|YP_001541360.1| - 3.2e-06 26.7 4.6 3.6e-06 26.5 3.2 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF1272 PF06906.6 gi|159042108|ref|YP_001541360.1| - 0.00025 20.8 2.9 0.00037 20.2 2.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.1 gi|159042108|ref|YP_001541360.1| - 0.00087 18.6 0.9 0.00087 18.6 0.7 2.3 2 1 0 2 2 1 1 zinc-ribbon domain HypA PF01155.14 gi|159042108|ref|YP_001541360.1| - 0.00091 18.8 1.1 0.0011 18.5 0.8 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family C1_3 PF07649.7 gi|159042108|ref|YP_001541360.1| - 0.0022 17.9 6.9 0.0034 17.3 4.8 1.3 1 0 0 1 1 1 1 C1-like domain FYVE PF01363.16 gi|159042108|ref|YP_001541360.1| - 0.003 17.4 4.2 0.0035 17.2 2.9 1.1 1 0 0 1 1 1 1 FYVE zinc finger zf-ribbon_3 PF13248.1 gi|159042108|ref|YP_001541360.1| - 0.0045 16.1 1.3 0.0045 16.1 0.9 2.5 2 1 0 2 2 1 1 zinc-ribbon domain zf-C3HC4_2 PF13923.1 gi|159042108|ref|YP_001541360.1| - 0.0051 16.8 7.3 0.019 14.9 5.1 1.8 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) ADK_lid PF05191.9 gi|159042108|ref|YP_001541360.1| - 0.0078 15.8 5.5 0.053 13.2 1.6 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid DUF35_N PF12172.3 gi|159042108|ref|YP_001541360.1| - 0.013 15.4 5.1 0.013 15.4 3.5 2.0 2 1 0 2 2 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|159042108|ref|YP_001541360.1| - 0.017 14.9 5.6 0.097 12.5 3.9 2.3 1 1 0 1 1 1 0 Double zinc ribbon IBR PF01485.16 gi|159042108|ref|YP_001541360.1| - 0.024 14.4 6.4 0.043 13.6 4.4 1.5 1 1 0 1 1 1 0 IBR domain zf-RING_2 PF13639.1 gi|159042108|ref|YP_001541360.1| - 0.029 14.1 4.2 0.039 13.7 2.9 1.2 1 0 0 1 1 1 0 Ring finger domain zf-C3HC4_3 PF13920.1 gi|159042108|ref|YP_001541360.1| - 0.058 13.0 6.3 0.12 12.1 4.3 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|159042108|ref|YP_001541360.1| - 0.095 12.4 5.5 0.16 11.7 3.8 1.4 1 1 0 1 1 1 0 zinc-RING finger domain zf-C2HC5 PF06221.8 gi|159042108|ref|YP_001541360.1| - 0.2 11.4 5.2 1.3 8.7 3.6 2.2 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DNA_RNApol_7kD PF03604.8 gi|159042108|ref|YP_001541360.1| - 0.23 10.9 6.3 0.96 8.9 0.4 2.7 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2688 PF10892.3 gi|159042108|ref|YP_001541360.1| - 0.25 11.0 0.3 0.25 11.0 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2688) A2L_zn_ribbon PF08792.5 gi|159042108|ref|YP_001541360.1| - 0.31 10.5 6.8 0.28 10.6 3.2 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|159042108|ref|YP_001541360.1| - 0.4 10.2 9.6 1 8.8 0.2 3.1 2 1 1 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Auto_anti-p27 PF06677.7 gi|159042108|ref|YP_001541360.1| - 0.41 10.4 11.3 0.85 9.4 0.7 3.1 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|159042108|ref|YP_001541360.1| - 0.49 10.0 3.5 0.89 9.2 2.4 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-B_box PF00643.19 gi|159042108|ref|YP_001541360.1| - 0.5 10.3 5.7 1.9 8.4 3.9 1.9 1 1 0 1 1 1 0 B-box zinc finger zf-C2H2_6 PF13912.1 gi|159042108|ref|YP_001541360.1| - 0.51 10.3 4.9 10 6.1 0.1 2.3 1 1 1 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|159042108|ref|YP_001541360.1| - 0.52 9.9 6.4 5.2 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.11 gi|159042108|ref|YP_001541360.1| - 0.62 9.9 5.4 5.1 7.0 4.0 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger C1_4 PF07975.7 gi|159042108|ref|YP_001541360.1| - 0.62 10.1 6.9 1.5 8.9 4.8 1.7 1 1 0 1 1 1 0 TFIIH C1-like domain Mu-like_Com PF10122.4 gi|159042108|ref|YP_001541360.1| - 0.88 8.6 9.7 0.54 9.3 5.3 1.8 1 1 0 1 1 1 0 Mu-like prophage protein Com DUF4428 PF14471.1 gi|159042108|ref|YP_001541360.1| - 0.9 9.3 4.5 2.3 8.0 3.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zinc_ribbon_4 PF13717.1 gi|159042108|ref|YP_001541360.1| - 1.4 8.7 7.4 5.5 6.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Cript PF10235.4 gi|159042108|ref|YP_001541360.1| - 1.4 9.3 5.2 11 6.3 3.6 1.9 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT TF_Zn_Ribbon PF08271.7 gi|159042108|ref|YP_001541360.1| - 1.5 8.2 8.7 9.4 5.6 5.0 2.8 2 1 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|159042108|ref|YP_001541360.1| - 1.6 8.4 8.5 5.8 6.7 0.3 3.1 2 1 1 3 3 3 0 Nudix N-terminal zf-HIT PF04438.11 gi|159042108|ref|YP_001541360.1| - 2.2 8.0 15.7 3.1 7.5 4.5 3.1 1 1 2 3 3 3 0 HIT zinc finger Carla_C4 PF01623.12 gi|159042108|ref|YP_001541360.1| - 2.3 8.0 6.4 2.7 7.8 4.4 1.1 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein Prok-RING_2 PF14445.1 gi|159042108|ref|YP_001541360.1| - 2.4 8.1 6.0 5.5 7.0 4.2 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 zf-ISL3 PF14690.1 gi|159042108|ref|YP_001541360.1| - 2.4 8.2 11.8 2.1 8.4 0.3 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|159042108|ref|YP_001541360.1| - 2.6 8.0 8.3 3.8 7.5 4.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|159042108|ref|YP_001541360.1| - 5 6.9 13.5 2e+03 -1.4 8.0 3.3 2 1 0 2 2 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4 PF00097.20 gi|159042108|ref|YP_001541360.1| - 6.2 6.5 7.9 1 9.0 0.7 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-CSL PF05207.8 gi|159042108|ref|YP_001541360.1| - 7.8 6.0 9.1 16 5.0 0.1 2.2 1 1 1 2 2 2 0 CSL zinc finger Zn_Tnp_IS1595 PF12760.2 gi|159042108|ref|YP_001541360.1| - 9.4 6.1 10.1 7.7 6.4 2.2 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|159042108|ref|YP_001541360.1| - 9.4 6.0 11.9 2.3 7.9 0.9 2.8 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 Hexapep PF00132.19 gi|159042109|ref|YP_001541361.1| - 0.015 14.7 5.5 7.4 6.2 0.0 3.7 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) NTP_transf_4 PF13562.1 gi|159042109|ref|YP_001541361.1| - 0.026 14.1 0.0 0.11 12.0 0.0 2.0 1 1 0 1 1 1 0 Sugar nucleotidyl transferase PaREP1 PF05942.6 gi|159042110|ref|YP_001541362.1| - 1.3e-32 112.0 3.3 2e-32 111.4 1.8 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family ComZ PF10815.3 gi|159042110|ref|YP_001541362.1| - 0.078 12.7 0.1 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 ComZ TPR_11 PF13414.1 gi|159042110|ref|YP_001541362.1| - 0.14 11.8 2.5 1.6 8.4 1.7 2.2 1 1 0 1 1 1 0 TPR repeat PAC2 PF09754.4 gi|159042111|ref|YP_001541363.1| - 2.8e-56 190.8 0.2 3.4e-56 190.5 0.2 1.1 1 0 0 1 1 1 1 PAC2 family Metallophos_2 PF12850.2 gi|159042112|ref|YP_001541364.1| - 7.4e-07 29.1 0.1 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|159042112|ref|YP_001541364.1| - 4.2e-05 23.0 0.0 0.0003 20.2 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PAC2 PF09754.4 gi|159042112|ref|YP_001541364.1| - 0.04 13.7 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 PAC2 family TP6A_N PF04406.9 gi|159042113|ref|YP_001541365.1| - 5.4e-25 86.8 0.1 9.2e-25 86.1 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|159042113|ref|YP_001541365.1| - 0.011 15.6 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HIT PF01230.18 gi|159042114|ref|YP_001541366.1| - 1.7e-13 50.8 0.0 2.7e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|159042114|ref|YP_001541366.1| - 8e-07 29.2 0.0 1.7e-06 28.2 0.0 1.5 1 1 1 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|159042114|ref|YP_001541366.1| - 0.00021 20.9 0.2 0.00033 20.2 0.2 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 APC_CDC26 PF10471.4 gi|159042116|ref|YP_001541368.1| - 0.018 15.7 0.1 0.035 14.8 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex APC subunit 1 DUF2223 PF09985.4 gi|159042116|ref|YP_001541368.1| - 0.024 13.9 0.9 0.12 11.6 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2223) DUF2436 PF10365.4 gi|159042116|ref|YP_001541368.1| - 0.081 12.5 0.4 10 5.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2436) DUF1762 PF08574.5 gi|159042116|ref|YP_001541368.1| - 0.28 11.6 1.9 2.7 8.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1762) HEPN PF05168.9 gi|159042117|ref|YP_001541369.1| - 2.2e-06 27.5 1.5 3e-06 27.0 1.0 1.2 1 0 0 1 1 1 1 HEPN domain PmbA_TldD PF01523.11 gi|159042118|ref|YP_001541370.1| - 5.6e-44 150.5 0.1 6.9e-44 150.2 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase GatB_N PF02934.10 gi|159042119|ref|YP_001541371.1| - 1.3e-72 244.1 0.0 1.7e-72 243.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.9 gi|159042119|ref|YP_001541371.1| - 2.3e-10 40.4 0.0 1.6e-09 37.8 0.0 2.3 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.13 gi|159042119|ref|YP_001541371.1| - 1e-07 31.7 0.5 2.8e-07 30.3 0.4 1.8 1 1 0 1 1 1 1 GatB domain YqeY PF09424.5 gi|159042119|ref|YP_001541371.1| - 8.1e-05 22.5 0.4 0.0016 18.3 0.1 2.4 2 0 0 2 2 2 1 Yqey-like protein ABC_tran PF00005.22 gi|159042120|ref|YP_001541372.1| - 4.7e-28 98.1 0.0 6.7e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159042120|ref|YP_001541372.1| - 1.4e-14 54.7 0.0 1.9e-09 37.8 0.0 2.3 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159042120|ref|YP_001541372.1| - 1.9e-06 27.2 0.0 5.7e-06 25.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|159042120|ref|YP_001541372.1| - 5.3e-05 22.4 0.0 0.12 11.4 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.1 gi|159042120|ref|YP_001541372.1| - 0.00019 21.3 0.0 0.0086 15.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|159042120|ref|YP_001541372.1| - 0.00058 19.3 0.0 0.027 13.8 0.0 2.1 2 0 0 2 2 2 1 MutS domain V AAA_25 PF13481.1 gi|159042120|ref|YP_001541372.1| - 0.00077 18.9 0.0 0.035 13.5 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|159042120|ref|YP_001541372.1| - 0.00086 19.3 0.0 0.0016 18.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|159042120|ref|YP_001541372.1| - 0.00087 18.2 0.0 0.0072 15.2 0.0 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA_23 PF13476.1 gi|159042120|ref|YP_001541372.1| - 0.0014 19.0 0.0 0.0024 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|159042120|ref|YP_001541372.1| - 0.0014 18.3 0.1 0.0035 17.0 0.0 1.6 2 0 0 2 2 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|159042120|ref|YP_001541372.1| - 0.0023 17.4 0.0 0.0045 16.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|159042120|ref|YP_001541372.1| - 0.0027 17.5 0.0 0.013 15.3 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|159042120|ref|YP_001541372.1| - 0.0036 16.9 0.0 0.008 15.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|159042120|ref|YP_001541372.1| - 0.0037 16.7 0.1 0.14 11.5 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain DUF1918 PF08940.6 gi|159042120|ref|YP_001541372.1| - 0.006 15.8 1.3 0.056 12.7 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1918) NACHT PF05729.7 gi|159042120|ref|YP_001541372.1| - 0.006 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF4162 PF13732.1 gi|159042120|ref|YP_001541372.1| - 0.0075 16.7 0.0 0.017 15.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_18 PF13238.1 gi|159042120|ref|YP_001541372.1| - 0.011 15.9 0.4 2.8 8.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|159042120|ref|YP_001541372.1| - 0.013 14.9 0.0 0.028 13.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|159042120|ref|YP_001541372.1| - 0.015 15.1 0.3 0.092 12.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|159042120|ref|YP_001541372.1| - 0.019 13.7 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_22 PF13401.1 gi|159042120|ref|YP_001541372.1| - 0.023 14.8 0.0 0.057 13.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|159042120|ref|YP_001541372.1| - 0.027 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PIF1 PF05970.9 gi|159042120|ref|YP_001541372.1| - 0.034 13.0 0.0 0.057 12.3 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_19 PF13245.1 gi|159042120|ref|YP_001541372.1| - 0.037 13.7 0.0 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|159042120|ref|YP_001541372.1| - 0.039 13.5 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|159042120|ref|YP_001541372.1| - 0.049 12.8 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|159042120|ref|YP_001541372.1| - 0.049 14.1 0.0 0.079 13.4 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF3584 PF12128.3 gi|159042120|ref|YP_001541372.1| - 0.052 10.8 0.0 0.07 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA PF00004.24 gi|159042120|ref|YP_001541372.1| - 0.058 13.5 0.1 0.14 12.3 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|159042120|ref|YP_001541372.1| - 0.1 12.0 0.0 5.1 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|159042120|ref|YP_001541372.1| - 0.11 12.2 0.0 0.41 10.3 0.0 1.9 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.7 gi|159042120|ref|YP_001541372.1| - 0.11 11.5 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.18 gi|159042120|ref|YP_001541372.1| - 0.12 12.2 0.0 0.28 11.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.1 gi|159042120|ref|YP_001541372.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|159042120|ref|YP_001541372.1| - 0.17 12.7 0.7 0.99 10.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|159042121|ref|YP_001541373.1| - 2.3e-10 39.9 24.7 3.3e-10 39.5 17.1 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|159042121|ref|YP_001541373.1| - 7.6e-07 28.4 23.1 7.6e-07 28.4 16.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein HTH_5 PF01022.15 gi|159042122|ref|YP_001541374.1| - 5.1e-10 38.8 0.1 9.5e-10 38.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|159042122|ref|YP_001541374.1| - 2.2e-09 36.9 0.0 3.3e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|159042122|ref|YP_001541374.1| - 3.5e-05 23.3 0.0 5.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|159042122|ref|YP_001541374.1| - 0.00042 19.6 0.7 0.0015 17.8 0.0 2.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|159042122|ref|YP_001541374.1| - 0.0051 16.4 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|159042122|ref|YP_001541374.1| - 0.042 13.4 0.1 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain Plexin_cytopl PF08337.7 gi|159042122|ref|YP_001541374.1| - 0.051 11.8 0.0 0.058 11.7 0.0 1.1 1 0 0 1 1 1 0 Plexin cytoplasmic RasGAP domain HTH_34 PF13601.1 gi|159042122|ref|YP_001541374.1| - 0.062 13.3 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|159042122|ref|YP_001541374.1| - 0.064 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator ArsR PF09824.4 gi|159042122|ref|YP_001541374.1| - 0.073 12.3 0.0 0.081 12.2 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF2250 PF10007.4 gi|159042122|ref|YP_001541374.1| - 0.08 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF221 PF02714.10 gi|159042123|ref|YP_001541375.1| - 0.027 13.3 0.7 0.035 12.9 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF221 Effector_1 PF04518.7 gi|159042123|ref|YP_001541375.1| - 0.062 12.2 0.0 0.068 12.1 0.0 1.0 1 0 0 1 1 1 0 Effector from type III secretion system COMP PF11598.3 gi|159042123|ref|YP_001541375.1| - 0.077 13.0 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein DUF948 PF06103.6 gi|159042123|ref|YP_001541375.1| - 0.11 12.3 1.2 0.26 11.1 0.8 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|159042123|ref|YP_001541375.1| - 0.27 11.4 1.6 0.48 10.7 1.1 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF4231 PF14015.1 gi|159042123|ref|YP_001541375.1| - 0.8 9.7 7.5 1.5 8.8 5.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF1049 PF06305.6 gi|159042123|ref|YP_001541375.1| - 2.2 7.8 4.6 1.8 8.0 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) Med30 PF11315.3 gi|159042124|ref|YP_001541376.1| - 0.021 14.9 0.9 0.022 14.8 0.6 1.0 1 0 0 1 1 1 0 Mediator complex subunit 30 YgaB PF14182.1 gi|159042124|ref|YP_001541376.1| - 0.043 14.0 0.4 0.045 13.9 0.3 1.0 1 0 0 1 1 1 0 YgaB-like protein Med28 PF11594.3 gi|159042124|ref|YP_001541376.1| - 0.11 12.7 0.1 0.11 12.7 0.1 1.0 1 0 0 1 1 1 0 Mediator complex subunit 28 Med9 PF07544.8 gi|159042124|ref|YP_001541376.1| - 0.12 12.1 0.6 0.11 12.1 0.4 1.1 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Med8 PF10232.4 gi|159042124|ref|YP_001541376.1| - 0.14 11.6 0.3 0.12 11.8 0.2 1.0 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 COMP PF11598.3 gi|159042124|ref|YP_001541376.1| - 1.1 9.3 3.4 5.7 7.0 2.4 1.9 1 1 0 1 1 1 0 Cartilage oligomeric matrix protein Pentapeptide_4 PF13599.1 gi|159042125|ref|YP_001541377.1| - 0.0021 17.7 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) HEPN PF05168.9 gi|159042126|ref|YP_001541378.1| - 3e-27 94.8 0.3 3.4e-27 94.6 0.2 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|159042127|ref|YP_001541379.1| - 1.1e-11 44.9 0.2 1.8e-11 44.2 0.2 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|159042127|ref|YP_001541379.1| - 0.047 13.7 0.0 0.064 13.3 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm Pribosyltran PF00156.22 gi|159042128|ref|YP_001541380.1| - 2.8e-18 65.8 0.4 3.7e-18 65.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|159042128|ref|YP_001541380.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Polyketide_cyc PF03364.15 gi|159042129|ref|YP_001541381.1| - 1.7e-05 24.8 0.0 2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|159042129|ref|YP_001541381.1| - 2.8e-05 24.3 0.0 3.5e-05 24.0 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Metallophos_2 PF12850.2 gi|159042130|ref|YP_001541382.1| - 1.1e-07 31.8 0.2 2e-06 27.7 0.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|159042130|ref|YP_001541382.1| - 3.8e-07 29.6 0.7 2.9e-05 23.5 0.0 2.2 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase BacA PF02673.13 gi|159042131|ref|YP_001541383.1| - 8.3e-48 162.8 21.3 9.8e-48 162.5 14.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Mtp PF03821.11 gi|159042131|ref|YP_001541383.1| - 0.014 14.7 0.6 0.014 14.7 0.4 2.0 2 0 0 2 2 2 0 Golgi 4-transmembrane spanning transporter Ribosomal_S9 PF00380.14 gi|159042132|ref|YP_001541384.1| - 9.1e-34 116.3 0.2 1.1e-33 116.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|159042133|ref|YP_001541385.1| - 4.6e-28 97.0 0.1 5.1e-28 96.8 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|159042133|ref|YP_001541385.1| - 0.0086 16.1 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) DUF1628 PF07790.6 gi|159042135|ref|YP_001541387.1| - 2.9 8.6 6.4 5.7 7.7 4.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) DUF4231 PF14015.1 gi|159042135|ref|YP_001541387.1| - 3.6 7.6 5.1 4.6 7.2 3.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF4307 PF14155.1 gi|159042135|ref|YP_001541387.1| - 4.6 7.0 5.8 30 4.4 4.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4307) TruD PF01142.13 gi|159042137|ref|YP_001541389.1| - 2.2e-83 280.0 0.0 3.3e-83 279.4 0.0 1.3 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PNP_UDP_1 PF01048.15 gi|159042138|ref|YP_001541390.1| - 3e-41 140.9 0.0 3.5e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Aldo_ket_red PF00248.16 gi|159042139|ref|YP_001541391.1| - 2.3e-65 220.2 0.0 2.6e-65 220.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Fumerase PF05681.9 gi|159042140|ref|YP_001541392.1| - 8.2e-84 280.8 0.0 9.5e-84 280.6 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) H-K_ATPase_N PF09040.6 gi|159042140|ref|YP_001541392.1| - 0.035 14.2 0.2 0.091 12.8 0.1 1.7 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain Archease PF01951.11 gi|159042141|ref|YP_001541393.1| - 4.4e-42 143.2 0.0 4.9e-42 143.1 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DrsE PF02635.10 gi|159042142|ref|YP_001541394.1| - 7.9e-12 45.3 0.0 1.1e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family PrgI PF12666.2 gi|159042143|ref|YP_001541395.1| - 3.2 7.9 22.3 0.079 13.1 7.2 2.1 1 1 1 2 2 2 0 PrgI family protein Arginase PF00491.16 gi|159042145|ref|YP_001541397.1| - 9.3e-54 182.5 0.0 1.1e-53 182.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF131 PF01998.12 gi|159042147|ref|YP_001541399.1| - 2.5e-19 68.3 6.0 2.5e-19 68.3 4.2 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 SK_channel PF03530.9 gi|159042147|ref|YP_001541399.1| - 0.0018 18.1 2.6 0.004 16.9 1.8 1.6 1 1 0 1 1 1 1 Calcium-activated SK potassium channel Choline_transpo PF04515.7 gi|159042147|ref|YP_001541399.1| - 0.0057 15.4 0.7 0.0069 15.1 0.5 1.1 1 0 0 1 1 1 1 Plasma-membrane choline transporter PRA1 PF03208.14 gi|159042147|ref|YP_001541399.1| - 0.009 15.3 2.6 0.011 15.1 1.8 1.2 1 0 0 1 1 1 1 PRA1 family protein TctB PF07331.6 gi|159042147|ref|YP_001541399.1| - 0.011 15.4 1.2 0.022 14.4 0.9 1.5 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Cytochrom_B_N_2 PF13631.1 gi|159042147|ref|YP_001541399.1| - 0.023 14.4 1.0 0.05 13.3 0.7 1.5 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF1980 PF09323.5 gi|159042147|ref|YP_001541399.1| - 0.026 14.2 0.9 0.084 12.6 0.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1980) EphA2_TM PF14575.1 gi|159042147|ref|YP_001541399.1| - 0.081 13.3 0.1 0.081 13.3 0.1 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain Claudin_3 PF06653.6 gi|159042147|ref|YP_001541399.1| - 0.083 12.6 2.0 0.12 12.0 1.4 1.3 1 1 0 1 1 1 0 Tight junction protein, Claudin-like RDD PF06271.7 gi|159042147|ref|YP_001541399.1| - 0.091 12.6 3.9 0.19 11.5 2.7 1.5 1 1 0 1 1 1 0 RDD family DUF202 PF02656.10 gi|159042147|ref|YP_001541399.1| - 0.12 12.6 0.5 0.18 12.0 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) TMEM154 PF15102.1 gi|159042147|ref|YP_001541399.1| - 0.15 11.8 0.2 0.15 11.8 0.1 2.1 1 1 1 2 2 1 0 TMEM154 protein family DUF872 PF05915.7 gi|159042147|ref|YP_001541399.1| - 0.15 11.9 0.2 0.15 11.9 0.1 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) ASFV_J13L PF05568.6 gi|159042147|ref|YP_001541399.1| - 0.24 10.9 7.0 0.82 9.1 1.2 2.0 1 1 1 2 2 2 0 African swine fever virus J13L protein DUF4064 PF13273.1 gi|159042147|ref|YP_001541399.1| - 0.25 11.4 6.5 0.43 10.6 4.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) ATP-synt_8 PF00895.15 gi|159042147|ref|YP_001541399.1| - 0.31 11.2 1.9 44 4.3 0.0 2.2 2 0 0 2 2 2 0 ATP synthase protein 8 Sigma_reg_N PF13800.1 gi|159042147|ref|YP_001541399.1| - 0.39 10.7 8.9 2.7 8.0 2.7 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Baculo_11_kDa PF06143.6 gi|159042147|ref|YP_001541399.1| - 0.57 9.5 7.4 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Baculovirus 11 kDa family HemY_N PF07219.8 gi|159042147|ref|YP_001541399.1| - 0.65 9.5 6.2 7.3 6.1 0.0 2.1 2 0 0 2 2 2 0 HemY protein N-terminus MatE PF01554.13 gi|159042147|ref|YP_001541399.1| - 0.66 9.5 9.2 1.8 8.1 0.4 2.0 2 0 0 2 2 2 0 MatE ODV-E18 PF10717.4 gi|159042147|ref|YP_001541399.1| - 1.2 8.6 12.9 0.58 9.6 0.7 2.3 2 1 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Tic20 PF09685.5 gi|159042147|ref|YP_001541399.1| - 1.4 8.8 9.4 7.5 6.5 0.1 2.1 2 0 0 2 2 2 0 Tic20-like protein NfeD PF01957.13 gi|159042147|ref|YP_001541399.1| - 2 8.5 9.0 6.5 6.8 0.1 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DUF2207 PF09972.4 gi|159042147|ref|YP_001541399.1| - 2.3 6.6 4.7 4 5.9 3.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) FixQ PF05545.6 gi|159042147|ref|YP_001541399.1| - 3.4 7.3 4.8 36 4.0 0.0 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Tetraspannin PF00335.15 gi|159042147|ref|YP_001541399.1| - 4.8 6.3 6.3 12 5.1 4.4 1.5 1 1 0 1 1 1 0 Tetraspanin family Bap31 PF05529.7 gi|159042147|ref|YP_001541399.1| - 5.5 6.4 5.5 9.4 5.6 0.0 2.0 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like DUF4330 PF14221.1 gi|159042147|ref|YP_001541399.1| - 7 6.4 10.9 0.36 10.6 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) DUF3671 PF12420.3 gi|159042148|ref|YP_001541400.1| - 1.3 9.0 10.2 1.9 8.5 7.0 1.3 1 0 0 1 1 1 0 Protein of unknown function Claudin_2 PF13903.1 gi|159042148|ref|YP_001541400.1| - 1.8 8.2 6.7 2.1 8.0 4.7 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3139 PF11337.3 gi|159042148|ref|YP_001541400.1| - 2.8 8.2 5.9 3 8.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF131 PF01998.12 gi|159042148|ref|YP_001541400.1| - 2.9 7.3 29.1 0.8 9.1 13.7 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF131 Baculo_11_kDa PF06143.6 gi|159042148|ref|YP_001541400.1| - 3.2 7.1 8.9 2.5 7.5 0.9 2.2 2 0 0 2 2 2 0 Baculovirus 11 kDa family SUR7 PF06687.7 gi|159042148|ref|YP_001541400.1| - 9.8 5.6 8.2 13 5.2 5.7 1.2 1 0 0 1 1 1 0 SUR7/PalI family DUF3086 PF11285.3 gi|159042149|ref|YP_001541401.1| - 0.0079 15.0 0.1 0.0099 14.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3086) Pro-kuma_activ PF09286.6 gi|159042150|ref|YP_001541402.1| - 1.5e-22 80.1 0.0 3.1e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|159042150|ref|YP_001541402.1| - 3e-06 26.5 1.4 3e-06 26.5 1.0 1.6 2 0 0 2 2 2 1 Subtilase family A2M_N PF01835.14 gi|159042150|ref|YP_001541402.1| - 0.029 14.6 0.0 1.5 9.1 0.0 3.4 3 0 0 3 3 3 0 MG2 domain Memo PF01875.12 gi|159042151|ref|YP_001541403.1| - 1.2e-75 254.0 0.1 1.3e-75 253.8 0.1 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|159042151|ref|YP_001541403.1| - 0.00016 20.7 0.1 0.00036 19.6 0.1 1.5 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Coatamer_beta_C PF07718.7 gi|159042151|ref|YP_001541403.1| - 0.0062 16.1 0.1 2.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Coatomer beta C-terminal region PsiE PF06146.7 gi|159042152|ref|YP_001541404.1| - 4.1e-10 39.7 11.2 4.1e-10 39.7 7.7 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E PAP2_C PF14360.1 gi|159042152|ref|YP_001541404.1| - 7.2 6.9 11.9 2.3 8.5 5.2 2.4 1 1 2 3 3 3 0 PAP2 superfamily C-terminal DUF77 PF01910.12 gi|159042153|ref|YP_001541405.1| - 2.6e-25 87.8 0.5 2.9e-25 87.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Antimicrobial_8 PF08103.6 gi|159042153|ref|YP_001541405.1| - 0.64 10.0 0.2 0.64 10.0 0.1 2.2 2 0 0 2 2 2 0 Uperin family PALP PF00291.20 gi|159042154|ref|YP_001541406.1| - 3.6e-47 161.0 0.0 4.7e-47 160.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Presenilin PF01080.12 gi|159042155|ref|YP_001541407.1| - 1.7e-06 27.1 27.4 0.0015 17.4 3.8 2.0 2 0 0 2 2 2 2 Presenilin MENTAL PF10457.4 gi|159042155|ref|YP_001541407.1| - 4.7 6.7 9.8 8.9 5.8 6.8 1.4 1 0 0 1 1 1 0 Cholesterol-capturing domain C5-epim_C PF06662.8 gi|159042156|ref|YP_001541408.1| - 0.0032 16.8 0.0 0.0065 15.7 0.0 1.5 1 0 0 1 1 1 1 D-glucuronyl C5-epimerase C-terminus DHHA1 PF02272.14 gi|159042157|ref|YP_001541409.1| - 0.00016 21.2 0.0 0.00047 19.7 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|159042157|ref|YP_001541409.1| - 0.04 13.5 0.0 0.81 9.3 0.0 2.2 2 0 0 2 2 2 0 DHH family DUF2250 PF10007.4 gi|159042158|ref|YP_001541410.1| - 1.3e-34 117.9 0.6 1.5e-34 117.8 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|159042158|ref|YP_001541410.1| - 1.3e-05 24.7 0.3 2.4e-05 23.9 0.2 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|159042158|ref|YP_001541410.1| - 0.0018 18.3 0.1 0.0024 17.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.1 gi|159042158|ref|YP_001541410.1| - 0.0031 17.0 0.0 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|159042158|ref|YP_001541410.1| - 0.0044 16.6 0.0 0.0097 15.5 0.0 1.7 1 1 0 1 1 1 1 MarR family T2SF PF00482.18 gi|159042158|ref|YP_001541410.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F Laminin_II PF06009.7 gi|159042159|ref|YP_001541411.1| - 0.071 12.8 0.1 7.1 6.3 0.0 2.1 2 0 0 2 2 2 0 Laminin Domain II DUF86 PF01934.12 gi|159042160|ref|YP_001541412.1| - 0.0082 15.7 0.0 0.0095 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|159042161|ref|YP_001541413.1| - 0.014 15.6 3.1 0.048 13.9 2.1 2.0 1 1 0 1 1 1 0 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|159042161|ref|YP_001541413.1| - 0.15 11.4 0.2 0.18 11.1 0.1 1.1 1 0 0 1 1 1 0 Predicted nucleotidyltransferase Ribosomal_L37ae PF01780.14 gi|159042162|ref|YP_001541414.1| - 5.5e-32 109.5 0.3 6.6e-32 109.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family UPF0547 PF10571.4 gi|159042162|ref|YP_001541414.1| - 8.4e-05 22.1 0.7 0.00021 20.9 0.5 1.6 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|159042162|ref|YP_001541414.1| - 0.0015 18.2 1.5 0.0023 17.6 1.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159042162|ref|YP_001541414.1| - 0.0048 16.5 0.3 0.008 15.8 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-tcix PF14952.1 gi|159042162|ref|YP_001541414.1| - 0.0054 16.0 4.1 0.23 10.8 0.1 2.3 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding zf-H2C2_2 PF13465.1 gi|159042162|ref|YP_001541414.1| - 0.0063 16.7 0.9 0.63 10.4 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|159042162|ref|YP_001541414.1| - 0.0064 16.7 1.2 0.19 12.1 0.1 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger IBR PF01485.16 gi|159042162|ref|YP_001541414.1| - 0.011 15.6 0.1 0.016 15.0 0.1 1.2 1 0 0 1 1 1 0 IBR domain HypA PF01155.14 gi|159042162|ref|YP_001541414.1| - 0.034 13.8 0.1 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|159042162|ref|YP_001541414.1| - 0.04 13.6 1.4 0.063 13.0 1.0 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_5 PF13719.1 gi|159042162|ref|YP_001541414.1| - 0.069 12.7 3.2 2.1 7.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|159042162|ref|YP_001541414.1| - 0.075 12.9 1.4 5.3 7.0 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|159042162|ref|YP_001541414.1| - 0.14 11.9 0.9 0.43 10.4 0.7 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF4379 PF14311.1 gi|159042162|ref|YP_001541414.1| - 0.14 11.9 4.4 2.7 7.8 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) zf-RanBP PF00641.13 gi|159042162|ref|YP_001541414.1| - 0.15 11.2 0.3 0.15 11.2 0.2 1.7 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DZR PF12773.2 gi|159042162|ref|YP_001541414.1| - 0.16 11.8 2.0 0.85 9.4 1.3 2.0 1 1 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|159042162|ref|YP_001541414.1| - 0.17 12.0 6.1 0.47 10.6 0.4 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|159042162|ref|YP_001541414.1| - 0.18 11.0 2.4 2.9 7.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159042162|ref|YP_001541414.1| - 0.31 10.7 4.3 3.3 7.4 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|159042162|ref|YP_001541414.1| - 0.4 11.1 2.5 2.3 8.7 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rubredoxin PF00301.15 gi|159042162|ref|YP_001541414.1| - 0.43 10.4 3.1 3.2 7.6 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin DUF164 PF02591.10 gi|159042162|ref|YP_001541414.1| - 0.45 10.3 2.8 4.7 7.1 0.3 2.3 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|159042162|ref|YP_001541414.1| - 0.48 9.9 0.1 0.48 9.9 0.1 2.6 2 1 1 3 3 2 0 Topoisomerase DNA binding C4 zinc finger zf-Sec23_Sec24 PF04810.10 gi|159042162|ref|YP_001541414.1| - 0.59 9.7 4.2 9.9 5.8 0.2 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger CpXC PF14353.1 gi|159042162|ref|YP_001541414.1| - 0.81 9.6 2.7 15 5.5 0.1 2.2 1 1 1 2 2 2 0 CpXC protein zf-CCHC_5 PF14787.1 gi|159042162|ref|YP_001541414.1| - 0.87 9.1 4.9 2.6 7.6 0.1 2.7 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger zinc_ribbon_2 PF13240.1 gi|159042162|ref|YP_001541414.1| - 1.7 8.2 6.8 12 5.5 4.9 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|159042162|ref|YP_001541414.1| - 1.9 7.7 6.8 14 4.9 0.9 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-MIZ PF02891.15 gi|159042162|ref|YP_001541414.1| - 3.6 7.1 5.7 51 3.4 0.2 2.4 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger Aldo_ket_red PF00248.16 gi|159042163|ref|YP_001541415.1| - 2.2e-65 220.2 0.0 2.6e-65 220.0 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Cupin_2 PF07883.6 gi|159042164|ref|YP_001541416.1| - 2.4e-20 71.7 0.0 3.3e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|159042164|ref|YP_001541416.1| - 2.2e-11 43.4 0.0 2.7e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|159042164|ref|YP_001541416.1| - 1.3e-09 37.8 0.0 1.6e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.11 gi|159042164|ref|YP_001541416.1| - 5.4e-08 32.4 0.0 1.5e-07 30.9 0.0 1.7 1 1 0 1 1 1 1 Auxin binding protein AraC_binding PF02311.14 gi|159042164|ref|YP_001541416.1| - 6.9e-06 25.7 0.0 0.00012 21.7 0.0 2.0 1 1 1 2 2 2 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|159042164|ref|YP_001541416.1| - 0.00021 20.6 0.0 0.00048 19.4 0.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|159042164|ref|YP_001541416.1| - 0.0028 17.2 0.0 0.0037 16.8 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain CENP-C_C PF11699.3 gi|159042164|ref|YP_001541416.1| - 0.0033 17.3 0.0 0.0051 16.7 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_6 PF12852.2 gi|159042164|ref|YP_001541416.1| - 0.0058 16.2 0.0 0.0065 16.1 0.0 1.1 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.7 gi|159042164|ref|YP_001541416.1| - 0.037 13.9 0.0 0.042 13.7 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Cupin_7 PF12973.2 gi|159042164|ref|YP_001541416.1| - 0.05 13.4 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain EutQ PF06249.7 gi|159042164|ref|YP_001541416.1| - 0.084 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ GPI PF06560.6 gi|159042164|ref|YP_001541416.1| - 0.096 11.6 0.0 0.16 10.9 0.0 1.4 1 1 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) Pyr_redox_2 PF07992.9 gi|159042165|ref|YP_001541417.1| - 1.2e-30 106.8 3.9 9.5e-28 97.4 2.7 3.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159042165|ref|YP_001541417.1| - 7.5e-20 71.1 8.9 1.1e-16 60.9 0.4 4.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|159042165|ref|YP_001541417.1| - 6.7e-17 61.5 0.0 1.6e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|159042165|ref|YP_001541417.1| - 7.1e-14 52.3 0.6 2.5e-05 24.4 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|159042165|ref|YP_001541417.1| - 1.5e-08 33.9 9.6 0.00045 19.2 0.0 3.8 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|159042165|ref|YP_001541417.1| - 4.2e-08 33.0 0.6 9.4e-05 22.3 0.0 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|159042165|ref|YP_001541417.1| - 9.7e-08 30.8 4.7 0.0011 17.5 0.1 3.8 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|159042165|ref|YP_001541417.1| - 1.7e-06 27.1 2.3 0.00098 18.0 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_9 PF13454.1 gi|159042165|ref|YP_001541417.1| - 2.9e-06 27.1 6.3 0.36 10.5 0.0 3.9 3 1 0 4 4 4 3 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|159042165|ref|YP_001541417.1| - 5.4e-05 22.2 0.5 0.00076 18.4 0.0 2.5 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|159042165|ref|YP_001541417.1| - 5.6e-05 22.6 0.2 0.0038 16.6 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|159042165|ref|YP_001541417.1| - 0.0012 18.0 1.7 0.023 13.7 0.0 2.6 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.14 gi|159042165|ref|YP_001541417.1| - 0.0026 16.9 0.2 0.023 13.8 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|159042165|ref|YP_001541417.1| - 0.0026 16.7 0.7 0.012 14.5 0.0 2.2 2 1 1 3 3 3 1 Lycopene cyclase protein TrkA_N PF02254.13 gi|159042165|ref|YP_001541417.1| - 0.0036 17.2 0.2 3.2 7.7 0.0 2.7 2 0 0 2 2 2 1 TrkA-N domain GIDA PF01134.17 gi|159042165|ref|YP_001541417.1| - 0.0059 15.5 5.4 0.032 13.1 0.1 3.6 3 1 1 4 4 4 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|159042165|ref|YP_001541417.1| - 0.0072 15.0 0.1 0.018 13.6 0.0 1.7 1 0 0 1 1 1 1 Tryptophan halogenase DFP PF04127.10 gi|159042165|ref|YP_001541417.1| - 0.0094 15.5 0.1 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein NAD_binding_7 PF13241.1 gi|159042165|ref|YP_001541417.1| - 0.01 16.1 0.4 2.4 8.4 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|159042165|ref|YP_001541417.1| - 0.011 15.4 0.6 0.12 12.0 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|159042165|ref|YP_001541417.1| - 0.018 14.1 4.4 0.28 10.2 0.1 2.3 2 0 0 2 2 2 0 FAD binding domain F420_oxidored PF03807.12 gi|159042165|ref|YP_001541417.1| - 0.023 15.1 0.9 0.33 11.4 0.1 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|159042165|ref|YP_001541417.1| - 0.064 13.0 0.2 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|159042165|ref|YP_001541417.1| - 0.064 12.9 0.1 2.2 7.9 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.20 gi|159042165|ref|YP_001541417.1| - 0.069 13.0 0.1 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Amino_oxidase PF01593.19 gi|159042165|ref|YP_001541417.1| - 0.079 12.0 0.0 0.36 9.8 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Peptidase_M24 PF00557.19 gi|159042166|ref|YP_001541418.1| - 2.7e-52 177.3 0.1 3.4e-52 177.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|159042166|ref|YP_001541418.1| - 9.5e-12 45.5 0.0 4.5e-11 43.3 0.0 1.9 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain HTH_10 PF04967.7 gi|159042167|ref|YP_001541419.1| - 2.2e-20 71.9 0.0 5.4e-20 70.7 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|159042167|ref|YP_001541419.1| - 9e-05 21.7 0.0 0.00084 18.6 0.0 2.2 1 1 1 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|159042167|ref|YP_001541419.1| - 0.00036 19.7 0.0 0.0011 18.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|159042167|ref|YP_001541419.1| - 0.0036 16.9 0.0 0.0085 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|159042167|ref|YP_001541419.1| - 0.0065 15.9 0.0 0.043 13.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_22 PF13309.1 gi|159042167|ref|YP_001541419.1| - 0.0082 15.8 0.0 0.046 13.4 0.0 2.2 2 1 0 2 2 2 1 HTH domain HTH_40 PF14493.1 gi|159042167|ref|YP_001541419.1| - 0.029 14.6 0.1 0.44 10.7 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|159042167|ref|YP_001541419.1| - 0.035 13.9 0.0 0.079 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3888 PF13027.1 gi|159042167|ref|YP_001541419.1| - 0.053 13.3 0.5 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3888) DUF507 PF04368.8 gi|159042167|ref|YP_001541419.1| - 0.053 13.1 0.6 4.8 6.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF507) DUF3837 PF12939.2 gi|159042167|ref|YP_001541419.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) HTH_30 PF13556.1 gi|159042167|ref|YP_001541419.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain VitK2_biosynth PF02621.9 gi|159042169|ref|YP_001541421.1| - 7.5e-75 251.3 0.0 8.4e-75 251.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis YhfZ_C PF14503.1 gi|159042169|ref|YP_001541421.1| - 0.083 12.2 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 YhfZ C-terminal domain MFS_1 PF07690.11 gi|159042170|ref|YP_001541422.1| - 3.1e-22 78.7 71.6 5.6e-20 71.3 30.3 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|159042170|ref|YP_001541422.1| - 6.7e-06 24.9 9.9 0.00096 17.8 0.8 2.1 2 0 0 2 2 2 2 LacY proton/sugar symporter Sugar_tr PF00083.19 gi|159042170|ref|YP_001541422.1| - 0.34 9.4 29.1 27 3.1 20.2 2.3 1 1 0 1 1 1 0 Sugar (and other) transporter DUF87 PF01935.12 gi|159042171|ref|YP_001541423.1| - 4.9e-30 105.0 0.0 8.1e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|159042171|ref|YP_001541423.1| - 2.9e-18 66.3 0.0 7e-18 65.0 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|159042171|ref|YP_001541423.1| - 7.1e-09 34.5 0.2 0.0016 16.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|159042171|ref|YP_001541423.1| - 1.1e-08 34.7 0.4 0.015 14.7 0.0 4.0 3 1 1 4 4 4 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|159042171|ref|YP_001541423.1| - 9.2e-07 27.8 0.0 1.5e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|159042171|ref|YP_001541423.1| - 6.3e-06 25.7 0.0 0.00036 20.0 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) HAS-barrel PF09378.5 gi|159042171|ref|YP_001541423.1| - 0.00039 20.2 0.9 0.0012 18.7 0.3 2.1 2 0 0 2 2 2 1 HAS barrel domain ResIII PF04851.10 gi|159042171|ref|YP_001541423.1| - 0.0043 16.8 0.0 0.027 14.2 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|159042171|ref|YP_001541423.1| - 0.011 15.9 0.0 0.89 9.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|159042171|ref|YP_001541423.1| - 0.012 15.3 0.0 0.047 13.4 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|159042171|ref|YP_001541423.1| - 0.015 15.5 0.0 0.83 9.8 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T4SS-DNA_transf PF02534.9 gi|159042171|ref|YP_001541423.1| - 0.067 11.7 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_16 PF13191.1 gi|159042171|ref|YP_001541423.1| - 0.073 13.0 0.1 8.5 6.3 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain NurA PF09376.5 gi|159042172|ref|YP_001541424.1| - 2.1e-10 40.5 3.7 4.4e-10 39.4 2.5 1.6 1 1 0 1 1 1 1 NurA domain UPF0047 PF01894.12 gi|159042173|ref|YP_001541425.1| - 9.2e-35 119.0 0.0 1.1e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF92 PF01940.11 gi|159042174|ref|YP_001541426.1| - 2.2e-50 170.9 10.2 2.9e-50 170.5 7.1 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 Lenti_VIF_2 PF07401.7 gi|159042174|ref|YP_001541426.1| - 0.1 11.6 0.2 0.17 10.9 0.1 1.4 1 1 0 1 1 1 0 Bovine Lentivirus VIF protein DUF2250 PF10007.4 gi|159042175|ref|YP_001541427.1| - 0.0081 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Caps_synth PF05704.7 gi|159042175|ref|YP_001541427.1| - 0.079 12.1 0.0 0.081 12.0 0.0 1.0 1 0 0 1 1 1 0 Capsular polysaccharide synthesis protein ADH_N PF08240.7 gi|159042176|ref|YP_001541428.1| - 8.3e-25 86.6 0.0 2.1e-24 85.3 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159042176|ref|YP_001541428.1| - 2.6e-23 81.9 0.6 4.3e-23 81.2 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|159042176|ref|YP_001541428.1| - 2.5e-13 51.0 0.2 6.1e-13 49.7 0.0 1.7 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Oxidored_nitro PF00148.14 gi|159042176|ref|YP_001541428.1| - 0.0014 17.3 0.0 0.002 16.8 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase adh_short PF00106.20 gi|159042176|ref|YP_001541428.1| - 0.0057 16.5 1.6 0.01 15.7 1.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase CPSase_L_chain PF00289.17 gi|159042176|ref|YP_001541428.1| - 0.0077 16.3 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|159042176|ref|YP_001541428.1| - 0.013 15.0 0.9 0.022 14.3 0.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|159042176|ref|YP_001541428.1| - 0.016 15.1 1.6 0.027 14.4 1.1 1.3 1 0 0 1 1 1 0 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|159042176|ref|YP_001541428.1| - 0.042 12.9 0.3 0.071 12.1 0.2 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ELFV_dehydrog PF00208.16 gi|159042176|ref|YP_001541428.1| - 0.05 13.1 0.3 0.089 12.3 0.2 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KR PF08659.5 gi|159042176|ref|YP_001541428.1| - 0.057 13.0 0.2 0.097 12.3 0.1 1.3 1 0 0 1 1 1 0 KR domain 2-Hacid_dh_C PF02826.14 gi|159042176|ref|YP_001541428.1| - 0.059 12.5 0.6 0.095 11.8 0.4 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E1-N PF14463.1 gi|159042176|ref|YP_001541428.1| - 0.11 12.1 0.4 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 E1 N-terminal domain Fumerase_C PF05683.7 gi|159042177|ref|YP_001541429.1| - 5.2e-60 202.0 0.0 6.4e-60 201.8 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DrsE PF02635.10 gi|159042178|ref|YP_001541430.1| - 4.9e-08 33.0 0.1 6.4e-08 32.6 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|159042178|ref|YP_001541430.1| - 0.0004 20.2 0.4 0.0099 15.6 0.0 2.0 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DUF2713 PF10897.3 gi|159042178|ref|YP_001541430.1| - 0.016 14.5 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2713) Colicin_C PF12106.3 gi|159042178|ref|YP_001541430.1| - 0.065 12.8 0.2 0.17 11.5 0.1 1.7 1 0 0 1 1 1 0 Colicin C terminal ribonuclease domain Sugar_tr PF00083.19 gi|159042179|ref|YP_001541431.1| - 1.5e-45 155.6 27.9 2.4e-45 154.9 19.4 1.2 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159042179|ref|YP_001541431.1| - 3e-29 101.8 36.0 3e-29 101.8 25.0 1.8 1 1 0 2 2 2 1 Major Facilitator Superfamily DUF1129 PF06570.6 gi|159042179|ref|YP_001541431.1| - 0.0092 15.3 0.6 0.0092 15.3 0.4 3.8 4 1 0 4 4 4 2 Protein of unknown function (DUF1129) MFS_1_like PF12832.2 gi|159042179|ref|YP_001541431.1| - 0.13 12.1 0.1 0.13 12.1 0.1 4.0 4 0 0 4 4 4 0 MFS_1 like family Sugar_tr PF00083.19 gi|159042180|ref|YP_001541432.1| - 9.4e-37 126.6 36.5 1.1e-36 126.3 25.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159042180|ref|YP_001541432.1| - 1.9e-30 105.8 55.3 3e-30 105.1 33.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|159042180|ref|YP_001541432.1| - 7.9e-11 41.0 35.1 5.8e-06 24.9 7.2 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein DUF2139 PF09910.4 gi|159042181|ref|YP_001541433.1| - 2.9e-31 108.7 0.1 4.9e-31 108.0 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) Glyco_hydro_12 PF01670.11 gi|159042182|ref|YP_001541434.1| - 8.7e-18 64.5 0.0 1.3e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Neural_ProG_Cyt PF06567.6 gi|159042182|ref|YP_001541434.1| - 0.15 12.2 0.0 0.56 10.3 0.0 1.8 2 0 0 2 2 2 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain UxaC PF02614.9 gi|159042183|ref|YP_001541435.1| - 1.4e-30 106.3 0.0 1.8e-30 105.9 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase Amidohydro_2 PF04909.9 gi|159042183|ref|YP_001541435.1| - 0.00079 19.0 0.0 0.0041 16.7 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|159042184|ref|YP_001541436.1| - 3.1e-57 193.9 0.0 3.5e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_4 PF13147.1 gi|159042184|ref|YP_001541436.1| - 0.076 13.0 0.1 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Amidohydrolase IMPDH PF00478.20 gi|159042185|ref|YP_001541437.1| - 1.9e-95 319.7 0.2 2.2e-95 319.5 0.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|159042185|ref|YP_001541437.1| - 8.5e-12 44.6 0.1 0.0002 21.1 0.0 3.0 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|159042185|ref|YP_001541437.1| - 3.2e-10 39.6 5.3 0.00042 19.5 3.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|159042185|ref|YP_001541437.1| - 2.5e-08 33.1 2.8 4.6e-08 32.2 2.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|159042185|ref|YP_001541437.1| - 0.0025 16.8 3.1 0.004 16.1 2.1 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|159042185|ref|YP_001541437.1| - 0.0054 15.8 0.4 0.019 14.0 0.2 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|159042185|ref|YP_001541437.1| - 0.02 14.1 1.1 0.098 11.9 0.1 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein PHP PF02811.14 gi|159042185|ref|YP_001541437.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 PHP domain Thy1 PF02511.10 gi|159042186|ref|YP_001541438.1| - 2.9e-37 127.8 0.0 3.9e-37 127.4 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein FF PF01846.14 gi|159042186|ref|YP_001541438.1| - 0.23 11.4 1.3 14 5.7 0.1 2.8 3 0 0 3 3 3 0 FF domain Glyco_hydro_15 PF00723.16 gi|159042187|ref|YP_001541439.1| - 2.1e-08 33.1 2.1 8.3e-07 27.9 0.1 2.5 1 1 2 3 3 3 2 Glycosyl hydrolases family 15 Prenyltrans_2 PF13249.1 gi|159042187|ref|YP_001541439.1| - 0.00049 20.4 0.1 0.0014 19.0 0.0 1.8 1 0 0 1 1 1 1 Prenyltransferase-like Glyco_hydro_31 PF01055.21 gi|159042189|ref|YP_001541441.1| - 2.4e-119 399.0 0.1 2.8e-119 398.8 0.1 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|159042189|ref|YP_001541441.1| - 8.7e-18 63.9 0.0 1.9e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like HALZ PF02183.13 gi|159042190|ref|YP_001541442.1| - 2.7e-05 23.7 5.6 4.9e-05 22.9 3.9 1.5 1 0 0 1 1 1 1 Homeobox associated leucine zipper ADIP PF11559.3 gi|159042190|ref|YP_001541442.1| - 8.1e-05 22.5 2.0 0.00015 21.7 1.4 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|159042190|ref|YP_001541442.1| - 0.0011 18.7 2.7 0.0031 17.3 1.9 1.6 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF904 PF06005.7 gi|159042190|ref|YP_001541442.1| - 0.0014 18.9 5.2 0.0014 18.9 3.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF904) APG6 PF04111.7 gi|159042190|ref|YP_001541442.1| - 0.0024 16.9 0.6 0.0041 16.1 0.4 1.4 1 0 0 1 1 1 1 Autophagy protein Apg6 TBPIP PF07106.8 gi|159042190|ref|YP_001541442.1| - 0.0026 17.3 1.4 0.0043 16.6 0.6 1.7 1 1 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DivIVA PF05103.8 gi|159042190|ref|YP_001541442.1| - 0.0027 17.7 1.7 0.0027 17.7 1.2 1.9 3 0 0 3 3 2 1 DivIVA protein GH3 PF03321.8 gi|159042190|ref|YP_001541442.1| - 0.0044 15.6 0.1 0.0068 14.9 0.1 1.2 1 0 0 1 1 1 1 GH3 auxin-responsive promoter DUF972 PF06156.8 gi|159042190|ref|YP_001541442.1| - 0.0045 17.3 2.4 0.0057 16.9 0.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF972) IncA PF04156.9 gi|159042190|ref|YP_001541442.1| - 0.011 15.3 0.9 0.019 14.5 0.6 1.4 1 0 0 1 1 1 0 IncA protein Jnk-SapK_ap_N PF09744.4 gi|159042190|ref|YP_001541442.1| - 0.015 15.2 1.8 0.03 14.2 1.2 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 TLE_N PF03920.10 gi|159042190|ref|YP_001541442.1| - 0.017 14.9 0.4 0.069 12.9 0.1 1.9 2 0 0 2 2 2 0 Groucho/TLE N-terminal Q-rich domain DUF3450 PF11932.3 gi|159042190|ref|YP_001541442.1| - 0.02 14.1 0.2 0.031 13.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) FemAB PF02388.11 gi|159042190|ref|YP_001541442.1| - 0.031 12.9 1.1 0.044 12.4 0.8 1.2 1 0 0 1 1 1 0 FemAB family EMP24_GP25L PF01105.19 gi|159042190|ref|YP_001541442.1| - 0.033 13.8 0.7 0.05 13.3 0.5 1.3 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF4201 PF13870.1 gi|159042190|ref|YP_001541442.1| - 0.042 13.2 3.4 0.1 12.0 2.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Seryl_tRNA_N PF02403.17 gi|159042190|ref|YP_001541442.1| - 0.044 13.7 4.4 0.046 13.7 1.5 2.0 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain G5 PF07501.7 gi|159042190|ref|YP_001541442.1| - 0.063 13.2 0.7 1.5 8.8 0.7 2.3 2 0 0 2 2 2 0 G5 domain KH_4 PF13083.1 gi|159042190|ref|YP_001541442.1| - 0.096 12.3 0.2 0.24 11.0 0.2 1.6 1 0 0 1 1 1 0 KH domain Prp19 PF08606.6 gi|159042190|ref|YP_001541442.1| - 0.1 12.3 0.2 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Prp19/Pso4-like Nsp1_C PF05064.8 gi|159042190|ref|YP_001541442.1| - 0.14 11.7 2.7 0.55 9.8 1.9 2.0 1 1 0 1 1 1 0 Nsp1-like C-terminal region DivIC PF04977.10 gi|159042190|ref|YP_001541442.1| - 0.29 10.6 6.1 1.3 8.6 4.2 2.1 1 1 0 1 1 1 0 Septum formation initiator CENP-H PF05837.7 gi|159042190|ref|YP_001541442.1| - 0.35 11.0 4.1 0.31 11.2 1.5 1.8 2 0 0 2 2 2 0 Centromere protein H (CENP-H) FlaC_arch PF05377.6 gi|159042190|ref|YP_001541442.1| - 3.2 7.7 6.6 11 6.0 2.5 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Ribosomal_S8e PF01201.17 gi|159042191|ref|YP_001541443.1| - 1.8e-29 102.5 1.6 2.1e-29 102.3 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF807 PF05660.6 gi|159042191|ref|YP_001541443.1| - 0.025 14.2 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF807) Gar1 PF04410.9 gi|159042192|ref|YP_001541444.1| - 0.0007 19.0 0.0 0.0011 18.3 0.0 1.4 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region TF_Zn_Ribbon PF08271.7 gi|159042193|ref|YP_001541445.1| - 9.3e-15 53.6 1.4 1.6e-14 52.9 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.14 gi|159042193|ref|YP_001541445.1| - 1.2e-11 44.2 0.2 4.4e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Ribosomal_S27e PF01667.12 gi|159042193|ref|YP_001541445.1| - 0.00023 20.6 0.2 0.00042 19.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|159042193|ref|YP_001541445.1| - 0.00075 18.6 1.6 0.0014 17.7 1.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|159042193|ref|YP_001541445.1| - 0.0013 18.7 1.2 0.0027 17.7 0.8 1.5 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|159042193|ref|YP_001541445.1| - 0.021 15.1 0.9 0.045 14.0 0.4 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF1461 PF07314.6 gi|159042193|ref|YP_001541445.1| - 0.032 13.9 0.2 0.032 13.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1461) HTH_AsnC-type PF13404.1 gi|159042193|ref|YP_001541445.1| - 0.055 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|159042193|ref|YP_001541445.1| - 0.06 13.4 0.2 11 6.2 0.0 2.6 2 0 0 2 2 2 0 Transcriptional regulator DZR PF12773.2 gi|159042193|ref|YP_001541445.1| - 0.067 13.0 0.4 0.11 12.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4_2 PF08281.7 gi|159042193|ref|YP_001541445.1| - 0.11 11.9 0.1 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0547 PF10571.4 gi|159042193|ref|YP_001541445.1| - 0.41 10.3 2.4 8.9 6.1 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.1 gi|159042193|ref|YP_001541445.1| - 7.2 6.9 6.6 2.6 8.3 0.0 3.0 4 0 0 4 4 3 0 Recombinase zinc beta ribbon domain tRNA_m1G_MT PF01746.16 gi|159042194|ref|YP_001541446.1| - 6.7e-06 25.8 0.0 2e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase Usg PF06233.7 gi|159042194|ref|YP_001541446.1| - 0.059 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Usg-like family AAA_assoc_C PF09821.4 gi|159042195|ref|YP_001541447.1| - 1e-19 70.9 0.0 1.3e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_23 PF13384.1 gi|159042196|ref|YP_001541448.1| - 3.8e-08 32.7 0.1 6.8e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|159042196|ref|YP_001541448.1| - 4.5e-06 26.0 0.0 8.2e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|159042196|ref|YP_001541448.1| - 3.5e-05 23.6 0.1 8.8e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|159042196|ref|YP_001541448.1| - 4.1e-05 23.0 0.0 7e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.1 gi|159042196|ref|YP_001541448.1| - 0.00031 20.2 0.0 0.00058 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|159042196|ref|YP_001541448.1| - 0.0021 17.4 0.0 0.0064 15.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|159042196|ref|YP_001541448.1| - 0.0027 17.8 0.0 0.0044 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.1 gi|159042196|ref|YP_001541448.1| - 0.0035 17.5 0.0 0.0078 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|159042196|ref|YP_001541448.1| - 0.0039 16.4 0.0 0.0098 15.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_17 PF12728.2 gi|159042196|ref|YP_001541448.1| - 0.0073 16.5 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|159042196|ref|YP_001541448.1| - 0.013 15.1 0.2 0.038 13.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain Sigma70_ECF PF07638.6 gi|159042196|ref|YP_001541448.1| - 0.014 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_8 PF02954.14 gi|159042196|ref|YP_001541448.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_22 PF13309.1 gi|159042196|ref|YP_001541448.1| - 0.015 15.0 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|159042196|ref|YP_001541448.1| - 0.016 14.9 0.2 0.043 13.5 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|159042196|ref|YP_001541448.1| - 0.021 14.6 0.1 0.04 13.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_36 PF13730.1 gi|159042196|ref|YP_001541448.1| - 0.05 13.7 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.1 gi|159042196|ref|YP_001541448.1| - 0.058 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.2 gi|159042196|ref|YP_001541448.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|159042196|ref|YP_001541448.1| - 0.097 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_3 PF01381.17 gi|159042196|ref|YP_001541448.1| - 0.11 12.4 0.1 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix UPF0122 PF04297.9 gi|159042196|ref|YP_001541448.1| - 0.12 12.4 0.1 0.43 10.6 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|159042196|ref|YP_001541448.1| - 0.12 11.7 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|159042196|ref|YP_001541448.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.16 gi|159042196|ref|YP_001541448.1| - 0.13 11.7 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family NPCBM_assoc PF10633.4 gi|159042197|ref|YP_001541449.1| - 2.1e-19 69.3 13.2 2.6e-05 24.1 0.3 6.9 7 0 0 7 7 7 5 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|159042197|ref|YP_001541449.1| - 0.00016 20.9 15.0 0.062 12.4 0.1 5.1 5 0 0 5 5 5 3 Translocon-associated protein beta (TRAPB) SCPU PF05229.10 gi|159042197|ref|YP_001541449.1| - 1.6 8.8 11.9 1.8 8.6 0.3 3.7 4 0 0 4 4 4 0 Spore Coat Protein U domain FCD PF07729.7 gi|159042198|ref|YP_001541450.1| - 3e-22 79.2 0.5 3e-22 79.2 0.3 1.6 2 1 0 2 2 2 1 FCD domain GntR PF00392.16 gi|159042198|ref|YP_001541450.1| - 5.5e-18 64.1 0.3 1.1e-17 63.1 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|159042198|ref|YP_001541450.1| - 0.00025 20.6 0.0 0.00063 19.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|159042198|ref|YP_001541450.1| - 0.00028 20.6 0.0 0.001 18.8 0.0 1.9 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|159042198|ref|YP_001541450.1| - 0.0014 17.9 0.0 0.0035 16.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|159042198|ref|YP_001541450.1| - 0.0027 17.9 0.0 0.0062 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1128 PF06569.6 gi|159042198|ref|YP_001541450.1| - 0.0093 15.6 0.1 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1128) Fe_dep_repress PF01325.14 gi|159042198|ref|YP_001541450.1| - 0.021 14.7 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|159042198|ref|YP_001541450.1| - 0.024 14.2 0.0 0.056 13.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|159042198|ref|YP_001541450.1| - 0.073 13.2 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix PaaX PF07848.7 gi|159042198|ref|YP_001541450.1| - 0.077 13.0 0.4 0.43 10.6 0.1 2.3 2 1 1 3 3 3 0 PaaX-like protein MarR PF01047.17 gi|159042198|ref|YP_001541450.1| - 0.12 12.1 0.0 0.32 10.7 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF608 PF04685.8 gi|159042199|ref|YP_001541451.1| - 2.3e-92 309.5 0.0 3.2e-92 309.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|159042199|ref|YP_001541451.1| - 3.9e-58 196.9 0.0 5.2e-58 196.5 0.0 1.2 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal YjeF_N PF03853.10 gi|159042201|ref|YP_001541453.1| - 2.5e-46 157.3 0.1 4e-46 156.6 0.1 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus Carb_kinase PF01256.12 gi|159042201|ref|YP_001541453.1| - 7.8e-45 153.0 0.9 1.4e-44 152.2 0.6 1.4 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|159042201|ref|YP_001541453.1| - 4.2e-06 26.1 0.1 7.8e-06 25.2 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF95 PF01944.12 gi|159042204|ref|YP_001541456.1| - 2.7e-19 69.4 14.9 3.5e-19 69.1 10.3 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF1673 PF07895.6 gi|159042204|ref|YP_001541456.1| - 1.5 8.2 8.5 0.55 9.7 3.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1673) Apq12 PF12716.2 gi|159042205|ref|YP_001541457.1| - 0.039 13.6 0.8 0.039 13.6 0.6 2.8 2 1 0 2 2 2 0 Nuclear pore assembly and biogenesis DoxX_3 PF13781.1 gi|159042205|ref|YP_001541457.1| - 0.044 14.1 1.5 0.044 14.1 1.0 1.9 1 1 0 2 2 2 0 DoxX-like family Chs3p PF12271.3 gi|159042205|ref|YP_001541457.1| - 6 5.7 9.7 20 4.0 6.8 1.6 1 1 0 1 1 1 0 Chitin synthase III catalytic subunit DUF3270 PF11674.3 gi|159042205|ref|YP_001541457.1| - 8.2 6.5 8.3 1.6 8.7 3.3 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3270) Ribosomal_S11 PF00411.14 gi|159042206|ref|YP_001541458.1| - 8.8e-41 138.5 0.2 1e-40 138.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 AIRS PF00586.19 gi|159042207|ref|YP_001541459.1| - 4.5e-13 49.2 0.0 7.4e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1980 PF09323.5 gi|159042207|ref|YP_001541459.1| - 0.028 14.1 0.1 0.045 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) CTP_transf_2 PF01467.21 gi|159042208|ref|YP_001541460.1| - 3.7e-12 46.5 0.0 5.6e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase T2SF PF00482.18 gi|159042209|ref|YP_001541461.1| - 2.9e-21 75.6 22.3 3e-13 49.7 0.1 4.6 4 0 0 4 4 4 3 Type II secretion system (T2SS), protein F UDG PF03167.14 gi|159042210|ref|YP_001541462.1| - 3e-42 143.6 0.0 4.1e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily SHOCT PF09851.4 gi|159042211|ref|YP_001541463.1| - 0.00017 20.9 6.6 0.025 14.0 0.3 3.0 3 0 0 3 3 3 2 Short C-terminal domain GvpG PF05120.7 gi|159042211|ref|YP_001541463.1| - 0.0038 16.9 3.1 2.1 8.2 0.1 2.9 1 1 2 3 3 3 2 Gas vesicle protein G MDM31_MDM32 PF08118.6 gi|159042211|ref|YP_001541463.1| - 0.0076 14.7 0.3 0.0098 14.4 0.2 1.1 1 0 0 1 1 1 1 Yeast mitochondrial distribution and morphology (MDM) proteins PspA_IM30 PF04012.7 gi|159042211|ref|YP_001541463.1| - 0.0092 15.3 15.2 0.039 13.3 4.2 2.2 1 1 1 2 2 2 2 PspA/IM30 family WXG100 PF06013.7 gi|159042211|ref|YP_001541463.1| - 0.021 14.8 2.8 0.13 12.3 0.0 2.6 3 0 0 3 3 2 0 Proteins of 100 residues with WXG Muted PF14942.1 gi|159042211|ref|YP_001541463.1| - 0.031 14.1 9.8 0.12 12.2 1.0 2.3 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein FlaC_arch PF05377.6 gi|159042211|ref|YP_001541463.1| - 0.073 12.9 2.2 0.7 9.8 0.1 3.1 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Suppressor_APC PF11414.3 gi|159042211|ref|YP_001541463.1| - 0.081 12.7 1.0 0.2 11.4 0.7 1.8 1 0 0 1 1 1 0 Adenomatous polyposis coli tumour suppressor protein COG5 PF10392.4 gi|159042211|ref|YP_001541463.1| - 0.09 12.7 6.2 0.12 12.3 2.1 2.5 1 1 2 3 3 3 0 Golgi transport complex subunit 5 SAB PF04382.8 gi|159042211|ref|YP_001541463.1| - 0.097 12.3 2.9 0.53 10.0 0.2 2.9 3 1 0 3 3 3 0 SAB domain Prefoldin PF02996.12 gi|159042211|ref|YP_001541463.1| - 0.1 12.2 15.1 0.036 13.7 4.9 3.5 2 1 1 3 3 3 0 Prefoldin subunit COG2 PF06148.6 gi|159042211|ref|YP_001541463.1| - 0.25 11.2 6.7 3.2 7.6 1.5 2.5 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ApoO PF09769.4 gi|159042211|ref|YP_001541463.1| - 0.27 10.9 6.8 1 9.0 0.2 2.8 1 1 1 2 2 2 0 Apolipoprotein O DUF4200 PF13863.1 gi|159042211|ref|YP_001541463.1| - 0.29 11.1 11.6 0.73 9.7 1.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF607 PF04678.8 gi|159042211|ref|YP_001541463.1| - 0.31 10.9 7.3 3 7.7 0.4 2.4 1 1 0 2 2 2 0 Protein of unknown function, DUF607 Laminin_II PF06009.7 gi|159042211|ref|YP_001541463.1| - 0.33 10.7 9.0 0.63 9.7 0.7 2.5 2 1 0 2 2 2 0 Laminin Domain II DUF651 PF04895.7 gi|159042211|ref|YP_001541463.1| - 0.6 9.7 4.8 8.8 5.9 0.3 3.0 2 1 0 3 3 3 0 Archaeal protein of unknown function (DUF651) Syntaxin-6_N PF09177.6 gi|159042211|ref|YP_001541463.1| - 0.66 10.4 10.1 1.3 9.4 0.9 2.9 1 1 2 3 3 3 0 Syntaxin 6, N-terminal DUF883 PF05957.8 gi|159042211|ref|YP_001541463.1| - 0.8 10.1 9.9 3.1 8.2 0.2 3.7 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF883) Fib_alpha PF08702.5 gi|159042211|ref|YP_001541463.1| - 0.84 9.7 12.6 2.4 8.2 0.5 2.9 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF1515 PF07439.6 gi|159042211|ref|YP_001541463.1| - 0.96 9.2 6.1 0.55 10.0 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1515) APG6 PF04111.7 gi|159042211|ref|YP_001541463.1| - 1.3 7.9 10.2 1.1 8.1 6.1 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF1664 PF07889.7 gi|159042211|ref|YP_001541463.1| - 1.3 8.8 9.6 3.3 7.5 1.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|159042211|ref|YP_001541463.1| - 1.4 7.2 14.0 0.62 8.4 6.5 1.9 1 1 1 2 2 2 0 AAA domain AbiH PF14253.1 gi|159042211|ref|YP_001541463.1| - 1.6 8.2 8.8 2.8 7.4 6.1 1.5 1 1 0 1 1 1 0 Bacteriophage abortive infection AbiH Uds1 PF15456.1 gi|159042211|ref|YP_001541463.1| - 2 8.3 8.4 1.2 9.1 3.4 2.5 2 1 0 2 2 2 0 Up-regulated During Septation DUF1657 PF07870.6 gi|159042211|ref|YP_001541463.1| - 4.3 7.0 0.0 4.3 7.0 0.0 4.1 6 0 0 6 6 5 0 Protein of unknown function (DUF1657) IncA PF04156.9 gi|159042211|ref|YP_001541463.1| - 6.1 6.3 13.0 6.1 6.3 8.0 1.7 1 1 0 1 1 1 0 IncA protein SHOCT PF09851.4 gi|159042212|ref|YP_001541464.1| - 0.00015 21.0 4.0 0.0032 16.9 0.1 3.5 3 1 1 4 4 3 1 Short C-terminal domain OmpH PF03938.9 gi|159042212|ref|YP_001541464.1| - 0.0004 20.3 0.7 0.78 9.6 0.0 2.5 1 1 1 2 2 2 2 Outer membrane protein (OmpH-like) Mnd1 PF03962.10 gi|159042212|ref|YP_001541464.1| - 0.0015 18.2 2.5 0.0023 17.6 0.2 2.0 1 1 0 1 1 1 1 Mnd1 family FliJ PF02050.11 gi|159042212|ref|YP_001541464.1| - 0.0015 18.5 4.5 0.41 10.6 0.0 3.1 1 1 1 3 3 3 1 Flagellar FliJ protein GvpG PF05120.7 gi|159042212|ref|YP_001541464.1| - 0.0022 17.7 3.2 0.37 10.6 0.1 2.3 2 0 0 2 2 2 1 Gas vesicle protein G TPR_MLP1_2 PF07926.7 gi|159042212|ref|YP_001541464.1| - 0.0026 17.5 6.1 0.027 14.2 0.0 2.7 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein TBPIP PF07106.8 gi|159042212|ref|YP_001541464.1| - 0.0029 17.1 9.0 0.067 12.7 1.0 2.8 1 1 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FH2 PF02181.18 gi|159042212|ref|YP_001541464.1| - 0.0047 15.8 1.1 0.39 9.5 0.1 2.4 1 1 1 2 2 2 1 Formin Homology 2 Domain WEMBL PF05701.6 gi|159042212|ref|YP_001541464.1| - 0.005 15.3 2.1 0.0097 14.4 0.9 1.7 1 1 0 1 1 1 1 Weak chloroplast movement under blue light PspA_IM30 PF04012.7 gi|159042212|ref|YP_001541464.1| - 0.0052 16.1 2.0 0.026 13.8 1.0 2.5 1 1 1 2 2 2 1 PspA/IM30 family FlaC_arch PF05377.6 gi|159042212|ref|YP_001541464.1| - 0.0054 16.6 5.3 0.58 10.0 0.1 3.9 2 1 2 4 4 4 1 Flagella accessory protein C (FlaC) DUF342 PF03961.8 gi|159042212|ref|YP_001541464.1| - 0.0056 15.1 5.3 0.011 14.2 3.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF342) THOC7 PF05615.8 gi|159042212|ref|YP_001541464.1| - 0.0066 16.7 6.5 0.084 13.1 0.2 3.1 1 1 1 2 2 2 1 Tho complex subunit 7 DUF4618 PF15397.1 gi|159042212|ref|YP_001541464.1| - 0.0085 15.4 4.1 0.099 11.9 2.9 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) Syntaxin_2 PF14523.1 gi|159042212|ref|YP_001541464.1| - 0.0092 15.9 5.1 0.65 10.0 2.5 3.0 1 1 1 2 2 2 1 Syntaxin-like protein Fib_alpha PF08702.5 gi|159042212|ref|YP_001541464.1| - 0.019 15.1 4.7 9.4 6.3 0.9 3.5 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.15 gi|159042212|ref|YP_001541464.1| - 0.031 14.0 9.2 3.1 7.6 2.3 3.5 1 1 3 4 4 4 0 Prefoldin subunit MbeD_MobD PF04899.7 gi|159042212|ref|YP_001541464.1| - 0.033 14.0 0.6 0.37 10.7 0.0 2.6 2 1 0 2 2 2 0 MbeD/MobD like OEP PF02321.13 gi|159042212|ref|YP_001541464.1| - 0.036 13.6 8.5 0.1 12.1 0.8 2.7 2 1 1 3 3 3 0 Outer membrane efflux protein IncA PF04156.9 gi|159042212|ref|YP_001541464.1| - 0.037 13.6 4.9 0.72 9.4 3.4 2.3 1 1 0 1 1 1 0 IncA protein Cep57_CLD_2 PF14197.1 gi|159042212|ref|YP_001541464.1| - 0.038 13.9 1.3 0.038 13.9 0.9 3.2 3 2 0 3 3 3 0 Centrosome localisation domain of PPC89 Hemerythrin PF01814.18 gi|159042212|ref|YP_001541464.1| - 0.05 13.7 0.8 9.7 6.3 0.5 3.4 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Cytochrom_B562 PF07361.6 gi|159042212|ref|YP_001541464.1| - 0.057 13.8 1.0 10 6.6 0.0 2.9 1 1 2 3 3 3 0 Cytochrome b562 Fmp27_WPPW PF10359.4 gi|159042212|ref|YP_001541464.1| - 0.06 11.7 2.5 0.16 10.3 1.7 1.8 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Myosin_tail_1 PF01576.14 gi|159042212|ref|YP_001541464.1| - 0.07 10.8 8.0 0.092 10.4 1.3 2.0 2 0 0 2 2 2 0 Myosin tail Tropomyosin PF00261.15 gi|159042212|ref|YP_001541464.1| - 0.077 12.0 10.1 1.3 8.0 2.6 2.9 2 1 0 2 2 2 0 Tropomyosin DUF1319 PF07028.6 gi|159042212|ref|YP_001541464.1| - 0.083 13.0 1.4 0.61 10.2 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) DUF3053 PF11254.3 gi|159042212|ref|YP_001541464.1| - 0.084 12.1 0.1 0.54 9.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3053) DUF1759 PF03564.10 gi|159042212|ref|YP_001541464.1| - 0.087 12.6 2.6 5.3 6.8 0.1 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1759) Plectin PF00681.15 gi|159042212|ref|YP_001541464.1| - 0.12 11.9 0.1 0.97 9.0 0.0 2.2 2 0 0 2 2 2 0 Plectin repeat DUF713 PF05218.9 gi|159042212|ref|YP_001541464.1| - 0.13 12.0 4.1 2.1 8.0 2.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF713) Spectrin PF00435.16 gi|159042212|ref|YP_001541464.1| - 0.15 12.3 3.8 5.3 7.3 0.1 3.2 2 2 0 3 3 3 0 Spectrin repeat DUF1311 PF07007.7 gi|159042212|ref|YP_001541464.1| - 0.16 12.1 3.1 4.5 7.4 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1311) Snapin_Pallidin PF14712.1 gi|159042212|ref|YP_001541464.1| - 0.2 12.0 2.9 1.9 8.8 0.2 2.9 2 1 1 3 3 3 0 Snapin/Pallidin DUF4298 PF14131.1 gi|159042212|ref|YP_001541464.1| - 0.2 11.5 7.0 18 5.3 0.0 4.1 3 2 0 3 3 3 0 Domain of unknown function (DUF4298) CENP-F_leu_zip PF10473.4 gi|159042212|ref|YP_001541464.1| - 0.21 11.4 9.1 0.51 10.2 1.4 2.9 1 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin PF00804.20 gi|159042212|ref|YP_001541464.1| - 0.24 11.5 4.2 0.56 10.3 2.4 2.1 1 1 0 1 1 1 0 Syntaxin USP8_interact PF08941.5 gi|159042212|ref|YP_001541464.1| - 0.24 10.6 2.8 7.7 5.8 0.2 2.6 1 1 2 3 3 3 0 USP8 interacting CCDC-167 PF15188.1 gi|159042212|ref|YP_001541464.1| - 0.26 11.2 7.7 7.3 6.6 0.8 3.1 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 ING PF12998.2 gi|159042212|ref|YP_001541464.1| - 0.33 11.2 6.1 9.7 6.5 0.9 2.9 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding KNOX2 PF03791.8 gi|159042212|ref|YP_001541464.1| - 0.39 10.0 0.0 0.39 10.0 0.0 2.6 3 0 0 3 3 2 0 KNOX2 domain AF0941-like PF14591.1 gi|159042212|ref|YP_001541464.1| - 0.87 9.6 8.7 2.8 8.0 4.3 2.7 1 1 1 2 2 2 0 AF0941-like Lebercilin PF15619.1 gi|159042212|ref|YP_001541464.1| - 0.98 8.8 8.8 11 5.4 0.6 3.4 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF600 PF04634.7 gi|159042212|ref|YP_001541464.1| - 1.1 9.2 5.5 6.1 6.8 0.1 3.1 2 1 0 3 3 3 0 Protein of unknown function, DUF600 Atg14 PF10186.4 gi|159042212|ref|YP_001541464.1| - 1.3 7.8 4.6 11 4.9 0.1 2.3 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 FadA PF09403.5 gi|159042212|ref|YP_001541464.1| - 1.4 8.9 8.2 3.2 7.7 0.4 3.2 2 1 1 3 3 3 0 Adhesion protein FadA DUF4463 PF14703.1 gi|159042212|ref|YP_001541464.1| - 2.8 8.5 7.4 21 5.7 0.6 3.4 2 2 0 2 2 2 0 Domain of unknown function (DUF4463) Enkurin PF13864.1 gi|159042212|ref|YP_001541464.1| - 5.2 7.3 8.3 4 7.6 0.2 3.4 2 2 1 3 3 3 0 Calmodulin-binding Kinetocho_Slk19 PF12709.2 gi|159042212|ref|YP_001541464.1| - 5.4 7.1 8.6 5 7.2 0.1 3.6 2 1 2 4 4 4 0 Central kinetochore-associated Peptidase_M24 PF00557.19 gi|159042213|ref|YP_001541465.1| - 1.1e-55 188.4 0.4 1.5e-55 187.9 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|159042213|ref|YP_001541465.1| - 1.1e-07 32.4 0.0 1.9e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Glycolytic PF00274.14 gi|159042213|ref|YP_001541465.1| - 0.14 10.5 0.0 0.19 10.0 0.0 1.2 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-I NAD_binding_5 PF07994.7 gi|159042214|ref|YP_001541466.1| - 1.5e-46 159.2 0.0 7.1e-46 157.0 0.0 2.0 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|159042214|ref|YP_001541466.1| - 7.8e-24 83.6 0.0 3e-23 81.8 0.0 1.8 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase Methyltransf_11 PF08241.7 gi|159042215|ref|YP_001541467.1| - 5.6e-21 74.8 0.0 7.5e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|159042215|ref|YP_001541467.1| - 1.7e-19 69.8 0.0 1.9e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|159042215|ref|YP_001541467.1| - 3.2e-14 53.1 0.0 4.3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|159042215|ref|YP_001541467.1| - 3.7e-14 52.7 0.0 4.5e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|159042215|ref|YP_001541467.1| - 4.5e-14 52.1 0.1 6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|159042215|ref|YP_001541467.1| - 1.2e-12 48.4 0.1 1.7e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|159042215|ref|YP_001541467.1| - 1.4e-10 41.4 0.0 2e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|159042215|ref|YP_001541467.1| - 7.6e-10 38.8 0.0 1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|159042215|ref|YP_001541467.1| - 2.3e-08 33.5 0.1 3.1e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|159042215|ref|YP_001541467.1| - 9e-07 28.7 0.4 3.7e-06 26.7 0.3 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.6 gi|159042215|ref|YP_001541467.1| - 1.4e-06 27.8 0.1 1.8e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|159042215|ref|YP_001541467.1| - 2.1e-06 27.2 0.1 2.9e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|159042215|ref|YP_001541467.1| - 3.5e-05 23.0 0.0 4.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_2 PF00891.13 gi|159042215|ref|YP_001541467.1| - 0.00042 19.5 0.2 0.00057 19.1 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|159042215|ref|YP_001541467.1| - 0.0013 17.8 0.6 0.0027 16.8 0.4 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|159042215|ref|YP_001541467.1| - 0.0017 17.4 0.0 0.0063 15.5 0.0 1.9 1 1 0 1 1 1 1 Putative methyltransferase DREV PF05219.7 gi|159042215|ref|YP_001541467.1| - 0.0026 16.6 0.0 0.0034 16.3 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase PCMT PF01135.14 gi|159042215|ref|YP_001541467.1| - 0.0038 16.7 0.2 0.0072 15.8 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|159042215|ref|YP_001541467.1| - 0.0084 15.8 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|159042215|ref|YP_001541467.1| - 0.015 16.1 0.0 0.026 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|159042215|ref|YP_001541467.1| - 0.017 15.1 0.1 0.023 14.6 0.1 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase FmrO PF07091.6 gi|159042215|ref|YP_001541467.1| - 0.026 13.5 0.0 0.033 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Met_10 PF02475.11 gi|159042215|ref|YP_001541467.1| - 0.052 13.1 0.2 0.075 12.6 0.1 1.3 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_29 PF03141.11 gi|159042215|ref|YP_001541467.1| - 0.073 11.3 0.4 0.31 9.3 0.0 1.8 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.15 gi|159042215|ref|YP_001541467.1| - 0.11 11.5 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Delta_lysin PF05372.6 gi|159042215|ref|YP_001541467.1| - 0.13 11.6 0.9 0.33 10.3 0.6 1.7 1 0 0 1 1 1 0 Delta lysin family Pox_MCEL PF03291.11 gi|159042215|ref|YP_001541467.1| - 0.13 11.1 0.0 0.94 8.2 0.0 2.0 1 1 0 1 1 1 0 mRNA capping enzyme Methyltransf_PK PF05891.7 gi|159042215|ref|YP_001541467.1| - 0.13 11.5 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Glyco_tranf_2_3 PF13641.1 gi|159042216|ref|YP_001541468.1| - 4.1e-25 88.9 0.0 5.7e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|159042216|ref|YP_001541468.1| - 3.4e-14 52.8 0.1 6e-14 52.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|159042216|ref|YP_001541468.1| - 6.1e-11 42.3 7.8 6.1e-11 42.3 5.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|159042216|ref|YP_001541468.1| - 4.4e-09 35.8 0.0 7.4e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|159042216|ref|YP_001541468.1| - 4.3e-08 32.5 0.0 9.2e-08 31.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 ABC2_membrane PF01061.19 gi|159042218|ref|YP_001541470.1| - 8.8e-11 41.3 24.7 8.8e-11 41.3 17.1 2.0 1 1 1 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|159042218|ref|YP_001541470.1| - 2.8e-05 23.3 26.4 2.8e-05 23.3 18.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Ceramidase PF05875.7 gi|159042218|ref|YP_001541470.1| - 0.24 10.4 4.1 0.081 12.0 0.2 2.0 1 1 0 1 1 1 0 Ceramidase ABC_tran PF00005.22 gi|159042219|ref|YP_001541471.1| - 7e-24 84.6 0.0 1.1e-23 84.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159042219|ref|YP_001541471.1| - 2.7e-15 57.0 0.2 2.5e-10 40.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|159042219|ref|YP_001541471.1| - 0.00024 20.5 0.1 0.00053 19.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|159042219|ref|YP_001541471.1| - 0.0082 16.3 0.0 0.046 13.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|159042219|ref|YP_001541471.1| - 0.021 13.5 0.0 0.024 13.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MukB PF04310.7 gi|159042219|ref|YP_001541471.1| - 0.024 13.9 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_17 PF13207.1 gi|159042219|ref|YP_001541471.1| - 0.05 14.4 0.2 0.086 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|159042219|ref|YP_001541471.1| - 0.097 11.8 0.0 13 4.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|159042219|ref|YP_001541471.1| - 0.1 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|159042219|ref|YP_001541471.1| - 0.12 12.2 0.0 0.32 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|159042219|ref|YP_001541471.1| - 0.13 12.5 0.2 0.46 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|159042219|ref|YP_001541471.1| - 0.15 11.5 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Auto_anti-p27 PF06677.7 gi|159042220|ref|YP_001541472.1| - 2e-15 56.2 1.0 2.9e-15 55.7 0.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|159042220|ref|YP_001541472.1| - 0.00019 21.3 0.1 0.23 11.4 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme zf-FPG_IleRS PF06827.9 gi|159042220|ref|YP_001541472.1| - 0.0016 18.0 0.8 0.0025 17.3 0.6 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|159042220|ref|YP_001541472.1| - 0.0034 16.6 2.3 0.0061 15.8 1.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|159042220|ref|YP_001541472.1| - 0.0043 16.8 0.3 0.0067 16.2 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|159042220|ref|YP_001541472.1| - 0.0054 16.4 0.3 0.0085 15.8 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|159042220|ref|YP_001541472.1| - 0.024 14.2 0.1 0.047 13.3 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|159042220|ref|YP_001541472.1| - 0.034 13.6 0.2 0.13 11.6 0.0 2.2 2 0 0 2 2 1 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.2 gi|159042220|ref|YP_001541472.1| - 0.039 13.7 0.4 0.057 13.2 0.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|159042220|ref|YP_001541472.1| - 0.04 13.9 0.3 0.88 9.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|159042220|ref|YP_001541472.1| - 0.045 13.2 1.3 0.11 11.9 0.8 1.7 1 1 1 2 2 2 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|159042220|ref|YP_001541472.1| - 0.051 13.2 5.1 0.19 11.4 3.5 2.2 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Elf1 PF05129.8 gi|159042220|ref|YP_001541472.1| - 0.055 13.1 0.7 0.73 9.5 0.5 2.2 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like RPA_interact_C PF14768.1 gi|159042220|ref|YP_001541472.1| - 0.078 13.3 0.3 0.14 12.6 0.2 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Lar_restr_allev PF14354.1 gi|159042220|ref|YP_001541472.1| - 0.084 13.1 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|159042220|ref|YP_001541472.1| - 0.13 12.2 1.3 16 5.5 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Sgf11 PF08209.6 gi|159042220|ref|YP_001541472.1| - 0.14 11.5 1.6 1.4 8.3 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.1 gi|159042220|ref|YP_001541472.1| - 0.14 11.4 5.3 3.9 6.8 4.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|159042220|ref|YP_001541472.1| - 0.26 10.5 1.7 0.97 8.6 1.1 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger DNA_RNApol_7kD PF03604.8 gi|159042220|ref|YP_001541472.1| - 0.27 10.7 2.0 4.3 6.8 0.4 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|159042220|ref|YP_001541472.1| - 0.41 10.1 4.7 1.1 8.8 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|159042220|ref|YP_001541472.1| - 1.5 8.5 7.2 1.9 8.2 2.9 2.0 1 1 1 2 2 2 0 HIT zinc finger DUF1610 PF07754.6 gi|159042220|ref|YP_001541472.1| - 3.1 8.0 5.8 0.87 9.7 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Glyco_hydro_31 PF01055.21 gi|159042221|ref|YP_001541473.1| - 2.2e-98 329.9 0.0 2.5e-97 326.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|159042221|ref|YP_001541473.1| - 1.5e-13 50.3 0.5 4.3e-13 48.9 0.2 2.0 2 0 0 2 2 2 1 Galactose mutarotase-like Glyco_hydro_20 PF00728.17 gi|159042222|ref|YP_001541474.1| - 2.1e-32 112.7 0.0 2.9e-32 112.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain AP_endonuc_2 PF01261.19 gi|159042223|ref|YP_001541475.1| - 2.1e-25 89.3 0.0 2.6e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|159042223|ref|YP_001541475.1| - 0.0005 19.5 0.0 0.0011 18.4 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus MFS_1 PF07690.11 gi|159042224|ref|YP_001541476.1| - 2.7e-21 75.7 65.1 3e-15 55.7 34.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159042224|ref|YP_001541476.1| - 0.1 11.1 46.4 0.015 13.8 11.3 3.6 1 1 3 4 4 4 0 Sugar (and other) transporter Peptidase_M19 PF01244.16 gi|159042225|ref|YP_001541477.1| - 9.9e-68 228.4 0.0 1.1e-67 228.2 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|159042225|ref|YP_001541477.1| - 0.14 11.6 0.0 0.47 9.9 0.0 1.9 1 1 2 3 3 3 0 Amidohydrolase DUF2250 PF10007.4 gi|159042226|ref|YP_001541478.1| - 0.0057 16.5 0.0 0.023 14.6 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) AdoHcyase PF05221.12 gi|159042227|ref|YP_001541479.1| - 7.8e-71 238.1 0.0 8.7e-71 238.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|159042227|ref|YP_001541479.1| - 9.8e-56 188.0 0.2 1.5e-55 187.4 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|159042227|ref|YP_001541479.1| - 2.8e-08 33.1 0.1 5.9e-08 32.0 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|159042227|ref|YP_001541479.1| - 1.3e-05 24.5 0.2 2.5e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|159042227|ref|YP_001541479.1| - 0.087 12.8 0.1 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain BcrAD_BadFG PF01869.15 gi|159042228|ref|YP_001541480.1| - 4.2e-32 111.5 1.0 5.1e-32 111.2 0.7 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_S66 PF02016.10 gi|159042229|ref|YP_001541481.1| - 6.5e-65 218.8 0.0 7.4e-65 218.7 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase Radical_SAM PF04055.16 gi|159042230|ref|YP_001541482.1| - 6.9e-24 84.8 0.0 1.2e-23 84.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|159042230|ref|YP_001541482.1| - 1.1e-22 80.1 0.0 1.6e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|159042230|ref|YP_001541482.1| - 1.4e-07 31.7 0.0 3e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159042230|ref|YP_001541482.1| - 4.5e-06 26.6 0.0 1.1e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fib_alpha PF08702.5 gi|159042231|ref|YP_001541483.1| - 0.012 15.7 3.0 0.012 15.7 2.1 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family NAGLU_C PF12972.2 gi|159042231|ref|YP_001541483.1| - 0.014 14.7 0.2 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain DUF2730 PF10805.3 gi|159042231|ref|YP_001541483.1| - 0.017 14.8 4.3 0.029 14.1 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) PRC PF05239.11 gi|159042231|ref|YP_001541483.1| - 0.038 13.8 1.2 0.082 12.7 0.8 1.6 1 0 0 1 1 1 0 PRC-barrel domain Snapin_Pallidin PF14712.1 gi|159042231|ref|YP_001541483.1| - 0.043 14.1 6.9 0.19 12.0 0.6 2.9 1 1 1 2 2 2 0 Snapin/Pallidin DivIC PF04977.10 gi|159042231|ref|YP_001541483.1| - 0.052 13.0 10.3 0.9 9.0 0.2 4.0 3 1 2 5 5 5 0 Septum formation initiator Phage_GPO PF05929.6 gi|159042231|ref|YP_001541483.1| - 0.1 11.8 1.6 0.17 11.1 0.9 1.4 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Syntaxin PF00804.20 gi|159042231|ref|YP_001541483.1| - 0.11 12.6 9.0 0.53 10.4 1.4 2.4 1 1 0 2 2 2 0 Syntaxin Crystall_2 PF09076.5 gi|159042231|ref|YP_001541483.1| - 0.12 12.1 0.2 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 Beta/Gamma crystallin Cob_adeno_trans PF01923.13 gi|159042231|ref|YP_001541483.1| - 0.13 12.0 1.8 0.22 11.2 0.5 1.8 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Ribosomal_L29 PF00831.18 gi|159042231|ref|YP_001541483.1| - 0.23 11.1 4.9 0.43 10.3 0.2 3.0 2 1 1 3 3 3 0 Ribosomal L29 protein H-kinase_dim PF02895.9 gi|159042231|ref|YP_001541483.1| - 0.25 11.7 3.7 0.84 10.0 0.3 2.6 1 1 1 2 2 2 0 Signal transducing histidine kinase, homodimeric domain Baculo_p24 PF05073.7 gi|159042231|ref|YP_001541483.1| - 0.29 10.6 4.6 0.058 12.9 1.0 1.6 2 0 0 2 2 1 0 Baculovirus P24 capsid protein DNA_repr_REX1B PF14966.1 gi|159042231|ref|YP_001541483.1| - 0.32 11.4 1.8 0.69 10.3 0.4 1.9 1 1 1 2 2 2 0 DNA repair REX1-B CorA PF01544.13 gi|159042231|ref|YP_001541483.1| - 0.34 9.8 6.1 0.56 9.1 4.2 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Apolipoprotein PF01442.13 gi|159042231|ref|YP_001541483.1| - 0.34 10.3 3.9 0.77 9.2 2.7 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Caudo_TAP PF02413.12 gi|159042231|ref|YP_001541483.1| - 0.49 10.5 4.9 37 4.4 3.4 2.5 1 1 0 1 1 1 0 Caudovirales tail fibre assembly protein MerR-DNA-bind PF09278.6 gi|159042231|ref|YP_001541483.1| - 0.52 10.7 3.7 0.53 10.7 0.1 2.6 3 0 0 3 3 3 0 MerR, DNA binding TBPIP PF07106.8 gi|159042231|ref|YP_001541483.1| - 0.54 9.7 11.5 1.5 8.3 2.1 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) BLOC1_2 PF10046.4 gi|159042231|ref|YP_001541483.1| - 0.58 10.3 9.0 0.51 10.5 2.6 2.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_DNA_bd PF12329.3 gi|159042231|ref|YP_001541483.1| - 0.72 9.7 9.6 4.2 7.2 0.5 3.0 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Med9 PF07544.8 gi|159042231|ref|YP_001541483.1| - 0.82 9.4 5.5 2.5 7.9 0.2 3.1 3 0 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 CK2S PF15011.1 gi|159042231|ref|YP_001541483.1| - 0.95 9.2 6.7 11 5.8 0.3 2.9 1 1 2 3 3 3 0 Casein Kinase 2 substrate WD40_alt PF14077.1 gi|159042231|ref|YP_001541483.1| - 1.4 8.5 9.0 0.98 9.1 0.5 3.8 3 1 1 4 4 4 0 Alternative WD40 repeat motif TMPIT PF07851.8 gi|159042231|ref|YP_001541483.1| - 1.6 7.7 10.1 0.13 11.3 3.8 1.4 2 0 0 2 2 2 0 TMPIT-like protein Prefoldin_2 PF01920.15 gi|159042231|ref|YP_001541483.1| - 1.7 8.4 9.1 2.6 7.8 0.7 2.9 1 1 0 2 2 2 0 Prefoldin subunit Spc24 PF08286.6 gi|159042231|ref|YP_001541483.1| - 2.8 7.6 11.1 64 3.2 6.5 2.7 2 1 0 2 2 1 0 Spc24 subunit of Ndc80 Fzo_mitofusin PF04799.8 gi|159042231|ref|YP_001541483.1| - 3.1 7.1 5.3 3.3 7.0 0.7 2.6 1 1 1 2 2 2 0 fzo-like conserved region Sec2p PF06428.6 gi|159042231|ref|YP_001541483.1| - 3.2 7.6 9.1 9.2 6.1 0.7 2.7 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p IncA PF04156.9 gi|159042231|ref|YP_001541483.1| - 4.6 6.7 7.9 11 5.6 3.3 2.0 1 1 1 2 2 2 0 IncA protein MutS_IV PF05190.13 gi|159042231|ref|YP_001541483.1| - 6.2 7.0 7.7 2.6 8.2 0.7 3.2 2 2 0 3 3 3 0 MutS family domain IV Med21 PF11221.3 gi|159042231|ref|YP_001541483.1| - 9.4 6.2 7.3 9.5 6.1 0.5 2.9 2 1 1 3 3 3 0 Subunit 21 of Mediator complex Peptidase_M16 PF00675.15 gi|159042232|ref|YP_001541484.1| - 4.7e-13 49.1 0.0 7.5e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|159042232|ref|YP_001541484.1| - 6.5e-11 42.2 0.0 1.8e-10 40.7 0.0 1.8 1 1 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16_C PF05193.16 gi|159042233|ref|YP_001541485.1| - 4.2e-09 36.3 0.0 6.5e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase M16 inactive domain Cation_efflux PF01545.16 gi|159042234|ref|YP_001541486.1| - 1.4e-39 135.8 11.9 1.6e-39 135.7 8.2 1.0 1 0 0 1 1 1 1 Cation efflux family ACT_6 PF13740.1 gi|159042234|ref|YP_001541486.1| - 0.023 14.3 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 ACT domain ACT_5 PF13710.1 gi|159042234|ref|YP_001541486.1| - 0.03 14.1 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 ACT domain Endonuc_subdom PF09062.5 gi|159042234|ref|YP_001541486.1| - 0.12 13.1 0.0 0.26 12.0 0.0 1.6 1 0 0 1 1 1 0 PI-PfuI Endonuclease subdomain DUF3212 PF11486.3 gi|159042235|ref|YP_001541487.1| - 0.059 13.1 0.3 5.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3212) Ldh_1_N PF00056.18 gi|159042236|ref|YP_001541488.1| - 9.3e-40 135.7 0.1 1.3e-39 135.2 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|159042236|ref|YP_001541488.1| - 1.9e-24 86.3 0.0 3.6e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|159042236|ref|YP_001541488.1| - 0.00021 20.6 0.0 0.00038 19.8 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.9 gi|159042236|ref|YP_001541488.1| - 0.0033 16.8 0.5 0.01 15.2 0.4 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2785 PF10978.3 gi|159042236|ref|YP_001541488.1| - 0.17 11.3 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) Peptidase_M20 PF01546.23 gi|159042237|ref|YP_001541489.1| - 1.2e-22 80.3 0.0 1.6e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|159042237|ref|YP_001541489.1| - 7.1e-12 45.0 0.0 1.3e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|159042237|ref|YP_001541489.1| - 0.018 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 ADH_zinc_N PF00107.21 gi|159042238|ref|YP_001541490.1| - 2.3e-20 72.4 0.0 4.1e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|159042238|ref|YP_001541490.1| - 1.1e-15 57.2 0.1 3.4e-15 55.7 0.0 1.8 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|159042238|ref|YP_001541490.1| - 0.00017 22.4 0.0 0.00036 21.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|159042238|ref|YP_001541490.1| - 0.017 14.5 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lactamase_B_2 PF12706.2 gi|159042239|ref|YP_001541491.1| - 8.5e-22 77.6 0.0 1.3e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|159042239|ref|YP_001541491.1| - 3.5e-15 56.1 1.7 9.2e-12 45.0 0.3 2.4 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily MitoNEET_N PF10660.4 gi|159042240|ref|YP_001541492.1| - 4.6 7.1 7.2 0.9 9.4 0.5 2.7 3 1 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF4064 PF13273.1 gi|159042240|ref|YP_001541492.1| - 9.1 6.4 10.3 2.6 8.1 4.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Pribosyltran PF00156.22 gi|159042241|ref|YP_001541493.1| - 1.5e-18 66.7 0.1 2.6e-18 65.9 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MarR PF01047.17 gi|159042241|ref|YP_001541493.1| - 0.0041 16.7 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family Dfp1_Him1_M PF08630.5 gi|159042241|ref|YP_001541493.1| - 0.0088 15.8 0.5 0.094 12.5 0.4 2.1 2 0 0 2 2 2 1 Dfp1/Him1, central region UPRTase PF14681.1 gi|159042241|ref|YP_001541493.1| - 0.039 13.1 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase MarR_2 PF12802.2 gi|159042241|ref|YP_001541493.1| - 0.094 12.3 0.0 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 MarR family OTCace_N PF02729.16 gi|159042242|ref|YP_001541494.1| - 5.2e-46 155.8 0.0 7.5e-46 155.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|159042242|ref|YP_001541494.1| - 8.1e-31 107.0 0.0 1.4e-30 106.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF871 PF05913.6 gi|159042243|ref|YP_001541495.1| - 1.2e-82 277.6 0.0 1.4e-82 277.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) PP-binding PF00550.20 gi|159042243|ref|YP_001541495.1| - 0.055 13.7 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Phosphopantetheine attachment site MetJ PF01340.15 gi|159042243|ref|YP_001541495.1| - 0.064 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Met Apo-repressor, MetJ Serendipity_A PF05482.7 gi|159042243|ref|YP_001541495.1| - 0.17 10.2 0.0 0.25 9.7 0.0 1.1 1 0 0 1 1 1 0 Serendipity locus alpha protein (SRY-A) Pyr_redox_2 PF07992.9 gi|159042244|ref|YP_001541496.1| - 2.4e-10 40.6 0.0 1.6e-09 37.9 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159042244|ref|YP_001541496.1| - 5.4e-08 33.1 3.4 0.0031 17.8 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|159042244|ref|YP_001541496.1| - 0.00027 20.8 0.2 0.00068 19.6 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|159042244|ref|YP_001541496.1| - 0.0032 16.1 0.2 0.0046 15.6 0.1 1.2 1 0 0 1 1 1 1 Tryptophan halogenase DAO PF01266.19 gi|159042244|ref|YP_001541496.1| - 0.0043 16.0 1.9 0.0097 14.8 1.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|159042244|ref|YP_001541496.1| - 0.0057 15.5 0.3 0.01 14.7 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|159042244|ref|YP_001541496.1| - 0.018 14.8 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding ADH_N PF08240.7 gi|159042245|ref|YP_001541497.1| - 3.1e-27 94.4 1.3 4.2e-27 94.0 0.2 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159042245|ref|YP_001541497.1| - 2.6e-19 69.0 2.4 6.4e-19 67.7 0.1 2.4 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|159042245|ref|YP_001541497.1| - 4.5e-09 37.2 0.0 1.3e-08 35.8 0.0 1.8 2 1 0 2 2 2 1 Zinc-binding dehydrogenase DUF4126 PF13548.1 gi|159042245|ref|YP_001541497.1| - 0.0074 15.7 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4126) AlaDh_PNT_C PF01262.16 gi|159042245|ref|YP_001541497.1| - 0.049 13.1 0.7 0.1 12.1 0.2 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_C PF02080.16 gi|159042245|ref|YP_001541497.1| - 0.12 12.0 0.0 9.9 5.8 0.0 3.0 2 0 0 2 2 2 0 TrkA-C domain Bac_Ubq_Cox PF01654.12 gi|159042246|ref|YP_001541498.1| - 1.7e-14 53.0 16.9 1.7e-14 53.0 11.7 2.1 2 1 0 2 2 2 1 Bacterial Cytochrome Ubiquinol Oxidase Romo1 PF10247.4 gi|159042246|ref|YP_001541498.1| - 0.086 13.0 1.6 0.8 9.9 0.0 3.0 3 0 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 MtrG PF04210.8 gi|159042246|ref|YP_001541498.1| - 0.21 11.2 0.1 0.21 11.2 0.0 3.3 6 0 0 6 6 6 0 Tetrahydromethanopterin S-methyltransferase, subunit G Bac_Ubq_Cox PF01654.12 gi|159042247|ref|YP_001541499.1| - 2.8e-70 236.9 32.0 4e-68 229.8 22.2 2.0 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase HTH_3 PF01381.17 gi|159042248|ref|YP_001541500.1| - 8.1e-10 38.4 0.2 1.6e-09 37.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|159042248|ref|YP_001541500.1| - 2.9e-08 33.6 0.0 6.9e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|159042248|ref|YP_001541500.1| - 5e-08 33.0 0.1 9.2e-08 32.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|159042248|ref|YP_001541500.1| - 0.0049 17.1 0.1 0.027 14.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|159042248|ref|YP_001541500.1| - 0.0068 16.0 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|159042248|ref|YP_001541500.1| - 0.058 13.0 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PGM_PMM_I PF02878.11 gi|159042249|ref|YP_001541501.1| - 3.2e-32 110.8 0.0 5.5e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|159042249|ref|YP_001541501.1| - 1.8e-21 76.3 0.0 3.9e-21 75.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|159042249|ref|YP_001541501.1| - 6.7e-18 64.7 0.0 1.3e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|159042249|ref|YP_001541501.1| - 3.2e-14 52.6 0.0 9.7e-14 51.1 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF996 PF06195.8 gi|159042250|ref|YP_001541502.1| - 1.6e-39 135.0 20.4 1.6e-39 135.0 14.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF996) Pox_A9 PF04835.7 gi|159042250|ref|YP_001541502.1| - 0.064 13.1 1.5 0.064 13.1 1.0 3.9 3 1 1 4 4 4 0 A9 protein conserved region TRP PF06011.7 gi|159042250|ref|YP_001541502.1| - 1.7 7.1 15.1 0.17 10.3 4.3 2.2 1 1 1 2 2 2 0 Transient receptor potential (TRP) ion channel PEN-2 PF10251.4 gi|159042250|ref|YP_001541502.1| - 1.7 8.8 11.6 0.3 11.3 0.2 2.8 2 1 0 2 2 2 0 Presenilin enhancer-2 subunit of gamma secretase DUF4013 PF13197.1 gi|159042250|ref|YP_001541502.1| - 4.6 6.5 39.9 8.4 5.6 26.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) Abhydrolase_9_N PF15420.1 gi|159042250|ref|YP_001541502.1| - 7.1 6.3 10.7 1.1 9.0 4.7 1.6 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus UPF0182 PF03699.8 gi|159042250|ref|YP_001541502.1| - 9.2 4.0 7.5 10 3.8 5.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF308 PF03729.8 gi|159042250|ref|YP_001541502.1| - 9.5 6.2 41.8 0.031 14.2 8.6 3.9 2 2 1 3 3 3 0 Short repeat of unknown function (DUF308) Glycos_transf_2 PF00535.21 gi|159042251|ref|YP_001541503.1| - 3.1e-11 43.2 0.8 1.5e-10 41.0 0.6 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159042251|ref|YP_001541503.1| - 0.00068 19.5 0.1 0.0022 17.8 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 PaREP1 PF05942.6 gi|159042252|ref|YP_001541504.1| - 3.2e-11 43.0 0.0 4e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glyco_hydro_31 PF01055.21 gi|159042253|ref|YP_001541505.1| - 7.9e-148 492.9 0.0 9.8e-148 492.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|159042253|ref|YP_001541505.1| - 2.1e-18 65.9 0.1 4.9e-18 64.7 0.1 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like SNARE_assoc PF09335.6 gi|159042254|ref|YP_001541506.1| - 1.5e-21 76.8 9.3 1.5e-21 76.8 6.5 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF2873 PF11395.3 gi|159042254|ref|YP_001541506.1| - 0.11 12.1 0.3 0.39 10.3 0.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) Peptidase_M48 PF01435.13 gi|159042255|ref|YP_001541507.1| - 4e-21 75.6 0.4 1e-20 74.2 0.3 1.7 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|159042255|ref|YP_001541507.1| - 0.0002 20.4 0.4 0.0002 20.4 0.2 1.9 1 1 0 2 2 2 1 BlaR1 peptidase M56 DUF1673 PF07895.6 gi|159042255|ref|YP_001541507.1| - 1.6 8.1 7.2 1.7 8.1 0.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) Tic20 PF09685.5 gi|159042255|ref|YP_001541507.1| - 3 7.8 13.1 1.7 8.6 1.9 2.5 2 0 0 2 2 2 0 Tic20-like protein FA_hydroxylase PF04116.8 gi|159042255|ref|YP_001541507.1| - 5.3 7.4 6.5 12 6.3 0.6 2.4 2 0 0 2 2 2 0 Fatty acid hydroxylase superfamily Trp_halogenase PF04820.9 gi|159042257|ref|YP_001541509.1| - 4.2e-13 48.7 0.1 6.6e-07 28.3 0.0 2.5 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|159042257|ref|YP_001541509.1| - 2.6e-12 46.4 0.4 1.5e-06 27.5 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|159042257|ref|YP_001541509.1| - 2.9e-12 46.1 5.2 2.1e-06 26.9 0.3 3.0 1 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|159042257|ref|YP_001541509.1| - 2.2e-10 39.9 0.4 5.7e-06 25.4 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|159042257|ref|YP_001541509.1| - 6.1e-10 38.7 1.5 8.3e-05 21.8 0.5 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|159042257|ref|YP_001541509.1| - 2.9e-06 26.5 0.1 6.2e-06 25.4 0.1 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|159042257|ref|YP_001541509.1| - 9.4e-06 25.5 0.5 2.5e-05 24.2 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|159042257|ref|YP_001541509.1| - 2.3e-05 23.4 0.3 4.2e-05 22.5 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|159042257|ref|YP_001541509.1| - 0.00018 20.1 0.2 0.00034 19.2 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein ApbA PF02558.11 gi|159042257|ref|YP_001541509.1| - 0.0002 20.8 0.1 0.00036 20.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|159042257|ref|YP_001541509.1| - 0.00035 20.5 0.7 0.0039 17.0 0.2 2.3 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|159042257|ref|YP_001541509.1| - 0.00055 19.6 0.2 0.00095 18.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GMC_oxred_N PF00732.14 gi|159042257|ref|YP_001541509.1| - 0.00061 19.0 0.2 0.041 13.0 0.0 2.1 2 0 0 2 2 2 1 GMC oxidoreductase Shikimate_DH PF01488.15 gi|159042257|ref|YP_001541509.1| - 0.0021 18.1 0.1 0.0046 17.0 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|159042257|ref|YP_001541509.1| - 0.0039 16.1 0.4 0.011 14.6 0.1 1.9 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|159042257|ref|YP_001541509.1| - 0.012 16.0 0.3 0.03 14.7 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|159042257|ref|YP_001541509.1| - 0.045 13.8 0.3 0.34 10.9 0.2 2.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|159042257|ref|YP_001541509.1| - 0.049 13.4 0.1 0.12 12.2 0.1 1.7 1 0 0 1 1 1 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|159042257|ref|YP_001541509.1| - 0.15 11.2 0.3 1.3 8.1 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|159042257|ref|YP_001541509.1| - 0.17 12.1 0.2 0.54 10.5 0.0 2.0 2 0 0 2 2 1 0 Putative NAD(P)-binding Aldolase_II PF00596.16 gi|159042258|ref|YP_001541510.1| - 2.5e-38 131.5 0.0 2.7e-38 131.4 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HTH_20 PF12840.2 gi|159042260|ref|YP_001541512.1| - 4.6e-09 35.9 0.0 7.3e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|159042260|ref|YP_001541512.1| - 1e-08 34.7 0.0 1.7e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|159042260|ref|YP_001541512.1| - 2.9e-07 29.7 0.1 5e-07 29.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|159042260|ref|YP_001541512.1| - 4.5e-06 26.2 0.0 1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|159042260|ref|YP_001541512.1| - 0.00017 21.1 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|159042260|ref|YP_001541512.1| - 0.00021 21.0 0.4 0.0012 18.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|159042260|ref|YP_001541512.1| - 0.0004 20.6 0.0 0.00075 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|159042260|ref|YP_001541512.1| - 0.0011 18.7 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_12 PF08461.5 gi|159042260|ref|YP_001541512.1| - 0.0014 18.3 0.1 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|159042260|ref|YP_001541512.1| - 0.0019 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|159042260|ref|YP_001541512.1| - 0.0023 17.5 0.0 0.0051 16.4 0.0 1.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|159042260|ref|YP_001541512.1| - 0.0028 17.3 0.1 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|159042260|ref|YP_001541512.1| - 0.018 15.0 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|159042260|ref|YP_001541512.1| - 0.033 13.7 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF2513 PF10711.4 gi|159042260|ref|YP_001541512.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_Crp_2 PF13545.1 gi|159042260|ref|YP_001541512.1| - 0.085 12.6 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|159042260|ref|YP_001541512.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.1 gi|159042260|ref|YP_001541512.1| - 0.12 11.9 0.3 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF1116 PF06545.6 gi|159042261|ref|YP_001541513.1| - 0.063 12.3 0.0 0.063 12.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1116) DFP PF04127.10 gi|159042262|ref|YP_001541514.1| - 3e-45 154.1 0.1 5.2e-45 153.3 0.1 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|159042262|ref|YP_001541514.1| - 2.8e-24 85.2 0.8 5.3e-24 84.3 0.2 1.8 2 0 0 2 2 2 1 Flavoprotein NAD_binding_10 PF13460.1 gi|159042262|ref|YP_001541514.1| - 0.071 13.1 0.6 0.2 11.6 0.1 2.0 2 0 0 2 2 2 0 NADH(P)-binding Na_H_Exchanger PF00999.16 gi|159042263|ref|YP_001541515.1| - 1.4e-26 92.9 56.3 1.7e-26 92.6 39.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF35_N PF12172.3 gi|159042264|ref|YP_001541516.1| - 0.00057 19.7 2.6 0.045 13.6 0.2 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|159042264|ref|YP_001541516.1| - 0.0056 15.8 3.4 0.69 9.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|159042264|ref|YP_001541516.1| - 0.008 16.1 0.8 1.8 8.6 0.1 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|159042264|ref|YP_001541516.1| - 0.011 15.3 3.9 0.85 9.3 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal Sgf11 PF08209.6 gi|159042264|ref|YP_001541516.1| - 0.023 14.0 6.7 0.53 9.6 1.7 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CTC1_2 PF15491.1 gi|159042264|ref|YP_001541516.1| - 0.026 13.5 0.2 0.026 13.5 0.1 1.1 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 Zn-ribbon_8 PF09723.5 gi|159042264|ref|YP_001541516.1| - 0.028 14.3 1.9 5.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|159042264|ref|YP_001541516.1| - 0.038 14.2 0.7 0.082 13.2 0.5 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|159042264|ref|YP_001541516.1| - 0.046 13.0 1.7 2.7 7.3 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|159042264|ref|YP_001541516.1| - 0.047 13.9 1.7 1.3 9.3 0.6 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|159042264|ref|YP_001541516.1| - 0.064 12.7 2.8 1.6 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHCC PF10276.4 gi|159042264|ref|YP_001541516.1| - 0.072 12.9 4.1 0.072 12.9 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-Mss51 PF13824.1 gi|159042264|ref|YP_001541516.1| - 0.088 12.6 0.1 6 6.8 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.1 gi|159042264|ref|YP_001541516.1| - 0.097 13.0 1.5 8.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|159042264|ref|YP_001541516.1| - 0.13 11.8 3.0 1.2 8.8 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|159042264|ref|YP_001541516.1| - 0.14 11.9 3.0 0.66 9.7 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger zf-FCS PF06467.9 gi|159042264|ref|YP_001541516.1| - 0.15 11.7 2.3 0.86 9.2 0.5 2.1 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif UPF0547 PF10571.4 gi|159042264|ref|YP_001541516.1| - 0.15 11.7 2.1 8.1 6.2 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|159042264|ref|YP_001541516.1| - 0.35 10.5 3.1 3.3 7.4 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|159042264|ref|YP_001541516.1| - 0.37 10.6 2.8 13 5.7 0.3 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain CpXC PF14353.1 gi|159042264|ref|YP_001541516.1| - 0.42 10.5 2.2 13 5.7 1.6 2.0 1 1 1 2 2 2 0 CpXC protein zf-C2H2_4 PF13894.1 gi|159042264|ref|YP_001541516.1| - 0.44 11.0 2.9 13 6.3 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|159042264|ref|YP_001541516.1| - 0.55 10.0 4.7 2.7 7.8 3.2 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|159042264|ref|YP_001541516.1| - 0.65 10.4 6.7 11 6.6 2.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-NADH-PPase PF09297.6 gi|159042264|ref|YP_001541516.1| - 0.76 9.3 4.0 12 5.4 1.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RRN7 PF11781.3 gi|159042264|ref|YP_001541516.1| - 3.4 7.2 5.6 24 4.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 ADK_lid PF05191.9 gi|159042264|ref|YP_001541516.1| - 4.7 6.9 6.0 23 4.7 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2HC_2 PF13913.1 gi|159042264|ref|YP_001541516.1| - 10 5.9 9.6 5.2 6.8 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type CBFD_NFYB_HMF PF00808.18 gi|159042265|ref|YP_001541517.1| - 4.8e-15 55.3 0.1 5.5e-15 55.1 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|159042265|ref|YP_001541517.1| - 2.2e-09 37.3 0.1 2.4e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|159042265|ref|YP_001541517.1| - 5e-06 26.6 0.1 5.8e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-18kDa PF02269.11 gi|159042265|ref|YP_001541517.1| - 0.05 13.4 0.1 0.058 13.2 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.6 gi|159042265|ref|YP_001541517.1| - 0.067 13.1 0.2 0.074 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) TAF PF02969.12 gi|159042265|ref|YP_001541517.1| - 0.12 12.3 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) PCP_red PF08369.5 gi|159042265|ref|YP_001541517.1| - 0.12 12.2 1.2 3.6 7.5 0.0 2.3 1 1 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Methyltransf_18 PF12847.2 gi|159042266|ref|YP_001541518.1| - 3.8e-05 24.2 0.1 5.5e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|159042266|ref|YP_001541518.1| - 0.0026 16.8 0.0 0.0029 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|159042266|ref|YP_001541518.1| - 0.0035 17.3 0.0 0.006 16.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|159042266|ref|YP_001541518.1| - 0.0054 16.0 0.0 0.36 10.0 0.0 2.1 2 0 0 2 2 2 1 Histone methylation protein DOT1 Methyltransf_31 PF13847.1 gi|159042266|ref|YP_001541518.1| - 0.009 15.6 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|159042266|ref|YP_001541518.1| - 0.014 14.4 0.0 0.017 14.1 0.0 1.0 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|159042266|ref|YP_001541518.1| - 0.044 12.8 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase ERCC4 PF02732.10 gi|159042267|ref|YP_001541519.1| - 2.4e-22 79.2 0.1 3.5e-22 78.7 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain Peptidase_A4 PF01828.12 gi|159042268|ref|YP_001541520.1| - 3.4 6.6 12.2 0.16 10.9 1.4 2.4 2 0 0 2 2 2 0 Peptidase A4 family AA_permease_2 PF13520.1 gi|159042269|ref|YP_001541521.1| - 7.6e-17 60.9 64.3 1.2e-16 60.3 44.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159042269|ref|YP_001541521.1| - 6e-11 41.3 62.8 1.2e-10 40.3 43.5 1.4 1 1 0 1 1 1 1 Amino acid permease Ribosomal_60s PF00428.14 gi|159042270|ref|YP_001541522.1| - 4.3e-17 62.2 17.9 6.1e-17 61.7 12.4 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein UPF0154 PF03672.8 gi|159042270|ref|YP_001541522.1| - 0.072 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) DHHW PF14286.1 gi|159042270|ref|YP_001541522.1| - 0.48 9.6 2.8 0.58 9.4 1.9 1.0 1 0 0 1 1 1 0 DHHW protein PepSY_2 PF13670.1 gi|159042270|ref|YP_001541522.1| - 0.66 9.9 11.2 0.85 9.5 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain POR PF01558.13 gi|159042271|ref|YP_001541523.1| - 4.6e-26 91.7 0.0 5.9e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Delta_lysin PF05372.6 gi|159042271|ref|YP_001541523.1| - 0.13 11.6 2.3 16 4.9 0.0 3.2 3 0 0 3 3 3 0 Delta lysin family Fer4 PF00037.22 gi|159042272|ref|YP_001541524.1| - 2.4e-16 58.5 18.1 5.2e-09 35.3 4.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|159042272|ref|YP_001541524.1| - 1.2e-11 44.7 9.2 1.8e-11 44.2 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159042272|ref|YP_001541524.1| - 1.5e-11 43.6 15.0 4.6e-07 29.4 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159042272|ref|YP_001541524.1| - 1.8e-11 43.6 21.7 6.3e-08 32.3 8.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|159042272|ref|YP_001541524.1| - 8.2e-11 41.5 9.1 1.1e-10 41.2 6.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159042272|ref|YP_001541524.1| - 1e-09 37.7 13.9 0.00012 21.7 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159042272|ref|YP_001541524.1| - 1.6e-09 38.3 8.0 1.4e-05 25.7 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|159042272|ref|YP_001541524.1| - 1.2e-08 35.0 10.7 1.7e-08 34.6 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159042272|ref|YP_001541524.1| - 5.7e-07 29.7 4.5 0.0036 17.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|159042272|ref|YP_001541524.1| - 4.7e-06 26.5 30.3 0.00054 19.9 7.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|159042272|ref|YP_001541524.1| - 2.8e-05 24.0 12.9 0.0083 16.3 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|159042272|ref|YP_001541524.1| - 0.0001 22.6 7.5 0.013 15.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159042272|ref|YP_001541524.1| - 0.00011 22.6 12.8 0.098 13.2 3.5 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|159042272|ref|YP_001541524.1| - 0.00016 21.9 10.8 0.007 16.7 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|159042272|ref|YP_001541524.1| - 0.015 15.8 6.9 0.015 15.8 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|159042272|ref|YP_001541524.1| - 0.25 11.2 6.4 0.41 10.5 4.5 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.14 gi|159042273|ref|YP_001541525.1| - 3.6e-64 216.4 0.1 4.5e-64 216.0 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|159042273|ref|YP_001541525.1| - 0.00026 20.9 0.0 0.00055 19.8 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|159042273|ref|YP_001541525.1| - 0.005 16.3 0.4 0.0071 15.8 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF4468 PF14730.1 gi|159042273|ref|YP_001541525.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold TPP_enzyme_C PF02775.16 gi|159042274|ref|YP_001541526.1| - 2.3e-20 72.6 0.1 3.2e-20 72.2 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|159042274|ref|YP_001541526.1| - 3.3e-05 22.9 0.0 4.5e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|159042274|ref|YP_001541526.1| - 0.028 13.1 0.0 0.038 12.7 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component ADH_N PF08240.7 gi|159042275|ref|YP_001541527.1| - 1.5e-17 63.3 0.0 2.8e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159042275|ref|YP_001541527.1| - 0.00077 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|159042275|ref|YP_001541527.1| - 0.057 13.4 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding DUF1188 PF06690.6 gi|159042275|ref|YP_001541527.1| - 0.12 11.5 0.1 0.39 9.8 0.0 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1188) DHH PF01368.15 gi|159042276|ref|YP_001541528.1| - 1.7e-17 63.3 0.0 3.9e-17 62.2 0.0 1.6 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|159042276|ref|YP_001541528.1| - 3.6e-08 32.9 0.2 8.4e-08 31.8 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain phiKZ_IP PF12699.2 gi|159042277|ref|YP_001541529.1| - 0.00037 19.5 2.3 0.00043 19.3 1.6 1.0 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins ANTH PF07651.11 gi|159042277|ref|YP_001541529.1| - 0.0069 15.1 0.2 0.009 14.7 0.1 1.1 1 0 0 1 1 1 1 ANTH domain MethyltransfD12 PF02086.10 gi|159042278|ref|YP_001541530.1| - 0.0052 16.2 0.0 0.012 15.0 0.0 1.6 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase ParA PF10609.4 gi|159042279|ref|YP_001541531.1| - 6.9e-27 93.1 0.1 1.2e-26 92.3 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|159042279|ref|YP_001541531.1| - 7.7e-13 48.2 0.0 1e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|159042279|ref|YP_001541531.1| - 2.2e-06 27.6 0.0 7.1e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|159042279|ref|YP_001541531.1| - 0.0005 19.2 1.6 0.0005 19.2 1.1 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|159042279|ref|YP_001541531.1| - 0.0046 16.0 0.0 0.0063 15.6 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|159042279|ref|YP_001541531.1| - 0.018 14.4 0.1 0.16 11.3 0.1 2.2 3 0 0 3 3 3 0 AAA domain AAA_26 PF13500.1 gi|159042279|ref|YP_001541531.1| - 0.02 14.5 0.4 3.6 7.1 0.3 2.2 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|159042279|ref|YP_001541531.1| - 0.021 13.5 0.3 0.034 12.9 0.2 1.2 1 0 0 1 1 1 0 ArgK protein ADH_zinc_N PF00107.21 gi|159042280|ref|YP_001541532.1| - 2.7e-35 120.7 0.2 5.8e-35 119.6 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|159042280|ref|YP_001541532.1| - 4.2e-34 116.5 0.8 4.2e-34 116.5 0.6 1.9 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|159042280|ref|YP_001541532.1| - 5e-16 59.7 0.2 8.3e-16 59.0 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|159042280|ref|YP_001541532.1| - 0.013 14.6 0.1 0.022 13.9 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_10 PF04967.7 gi|159042281|ref|YP_001541533.1| - 6.2e-19 67.3 0.1 1.2e-18 66.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|159042281|ref|YP_001541533.1| - 0.0045 16.2 0.5 0.053 12.8 0.3 2.6 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_27 PF13463.1 gi|159042281|ref|YP_001541533.1| - 0.0083 16.4 0.5 0.2 11.9 0.0 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|159042281|ref|YP_001541533.1| - 0.032 13.8 0.1 0.094 12.3 0.1 1.9 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|159042281|ref|YP_001541533.1| - 0.046 13.4 0.2 0.17 11.6 0.2 2.1 1 1 0 1 1 1 0 MarR family HTH_31 PF13560.1 gi|159042281|ref|YP_001541533.1| - 0.051 13.7 0.1 0.091 12.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4179 PF13786.1 gi|159042281|ref|YP_001541533.1| - 0.065 13.4 0.1 0.14 12.4 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) HTH_22 PF13309.1 gi|159042281|ref|YP_001541533.1| - 0.075 12.7 0.0 0.22 11.2 0.0 1.8 1 0 0 1 1 1 0 HTH domain Mga PF05043.8 gi|159042281|ref|YP_001541533.1| - 0.093 13.0 0.1 0.25 11.6 0.0 1.8 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_26 PF13443.1 gi|159042281|ref|YP_001541533.1| - 0.25 11.5 2.1 5.1 7.3 0.0 3.0 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain Glyco_hydro_43 PF04616.9 gi|159042282|ref|YP_001541534.1| - 0.0012 17.9 0.0 0.0023 17.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 phage_tail_N PF08400.5 gi|159042283|ref|YP_001541535.1| - 0.077 12.6 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Prophage tail fibre N-terminal DUF87 PF01935.12 gi|159042284|ref|YP_001541536.1| - 2.6e-35 122.3 0.0 3.7e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|159042284|ref|YP_001541536.1| - 1.2e-20 74.2 0.0 1.3e-19 70.7 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|159042284|ref|YP_001541536.1| - 4.3e-06 26.3 0.1 0.00018 21.0 0.0 2.3 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|159042284|ref|YP_001541536.1| - 0.0037 17.3 0.0 2.6 8.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|159042284|ref|YP_001541536.1| - 0.0097 16.1 0.1 0.49 10.6 0.1 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|159042284|ref|YP_001541536.1| - 0.012 14.2 0.0 0.033 12.8 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|159042284|ref|YP_001541536.1| - 0.019 13.3 0.0 3.3 5.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|159042284|ref|YP_001541536.1| - 0.029 13.8 0.0 0.062 12.7 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Beta_protein PF14350.1 gi|159042285|ref|YP_001541537.1| - 0.0089 15.2 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Beta protein TGT PF01702.13 gi|159042285|ref|YP_001541537.1| - 0.12 11.5 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase NTP_transf_3 PF12804.2 gi|159042286|ref|YP_001541538.1| - 3.5e-17 62.9 0.0 4.9e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|159042286|ref|YP_001541538.1| - 0.00016 21.0 0.0 0.00037 19.8 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|159042286|ref|YP_001541538.1| - 0.0066 16.0 0.0 0.009 15.6 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase DUF43 PF01861.11 gi|159042286|ref|YP_001541538.1| - 0.048 12.6 0.0 0.063 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 NeuB PF03102.9 gi|159042286|ref|YP_001541538.1| - 0.069 12.2 0.0 0.091 11.8 0.0 1.1 1 0 0 1 1 1 0 NeuB family Thioredoxin_2 PF13098.1 gi|159042287|ref|YP_001541539.1| - 1.5e-11 44.4 0.0 2.5e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.10 gi|159042287|ref|YP_001541539.1| - 4.7e-11 42.7 25.7 4.7e-11 42.7 17.8 2.3 2 1 1 3 3 3 2 Cytochrome C biogenesis protein transmembrane region Thioredoxin_7 PF13899.1 gi|159042287|ref|YP_001541539.1| - 1.4e-05 25.0 0.0 2.3e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|159042287|ref|YP_001541539.1| - 0.012 15.6 0.2 0.03 14.3 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin Thioredox_DsbH PF03190.10 gi|159042287|ref|YP_001541539.1| - 0.022 14.5 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF255 DsbD_2 PF13386.1 gi|159042287|ref|YP_001541539.1| - 0.29 10.8 34.0 0.015 15.0 17.7 2.5 2 1 1 3 3 3 0 Cytochrome C biogenesis protein transmembrane region DUF371 PF04027.8 gi|159042288|ref|YP_001541540.1| - 1.6e-43 147.4 0.5 2e-43 147.2 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TatC PF00902.13 gi|159042289|ref|YP_001541541.1| - 0.059 12.7 10.1 0.13 11.6 6.4 2.1 1 1 0 1 1 1 0 Sec-independent protein translocase protein (TatC) CTP_transf_1 PF01148.15 gi|159042289|ref|YP_001541541.1| - 0.23 11.0 17.3 0.68 9.5 12.0 1.9 1 1 0 1 1 1 0 Cytidylyltransferase family Chordopox_L2 PF05803.7 gi|159042289|ref|YP_001541541.1| - 0.44 10.2 4.8 0.92 9.1 2.9 1.8 1 1 0 1 1 1 0 Chordopoxvirus L2 protein RNase_HII PF01351.13 gi|159042290|ref|YP_001541542.1| - 1.6e-38 132.3 0.0 1.9e-38 132.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII HTH_17 PF12728.2 gi|159042290|ref|YP_001541542.1| - 0.003 17.7 0.7 0.82 9.9 0.3 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain GlutR_N PF05201.10 gi|159042291|ref|YP_001541543.1| - 3.2e-31 107.9 0.0 7.8e-31 106.7 0.0 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|159042291|ref|YP_001541543.1| - 4.6e-25 88.2 0.1 8.9e-25 87.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|159042291|ref|YP_001541543.1| - 3.3e-11 43.4 0.4 7.8e-11 42.2 0.1 1.8 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|159042291|ref|YP_001541543.1| - 2.5e-07 30.0 0.0 6.5e-07 28.6 0.0 1.6 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|159042291|ref|YP_001541543.1| - 1.9e-06 27.8 0.0 4.3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|159042291|ref|YP_001541543.1| - 1.5e-05 25.1 0.5 2.4e-05 24.3 0.1 1.5 2 0 0 2 2 1 1 NADH(P)-binding GlutR_dimer PF00745.15 gi|159042291|ref|YP_001541543.1| - 1.8e-05 24.6 0.1 3.8e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Saccharop_dh PF03435.13 gi|159042291|ref|YP_001541543.1| - 3.5e-05 22.9 0.0 6.1e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase ThiF PF00899.16 gi|159042291|ref|YP_001541543.1| - 0.00015 21.6 0.6 0.00035 20.3 0.1 1.9 3 0 0 3 3 1 1 ThiF family OCD_Mu_crystall PF02423.10 gi|159042291|ref|YP_001541543.1| - 0.00025 19.9 0.0 0.00039 19.3 0.0 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family TrkA_N PF02254.13 gi|159042291|ref|YP_001541543.1| - 0.001 19.0 0.1 0.0028 17.6 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|159042291|ref|YP_001541543.1| - 0.0011 18.9 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|159042291|ref|YP_001541543.1| - 0.0014 19.0 0.0 0.0036 17.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|159042291|ref|YP_001541543.1| - 0.0018 17.6 0.0 0.0033 16.7 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_3 PF03447.11 gi|159042291|ref|YP_001541543.1| - 0.0021 18.4 0.0 0.0047 17.3 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ApbA PF02558.11 gi|159042291|ref|YP_001541543.1| - 0.0028 17.0 0.5 0.0095 15.3 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|159042291|ref|YP_001541543.1| - 0.0038 16.8 0.0 0.0084 15.7 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|159042291|ref|YP_001541543.1| - 0.012 14.9 0.0 0.039 13.1 0.0 1.8 1 1 0 1 1 1 0 NmrA-like family NAD_binding_7 PF13241.1 gi|159042291|ref|YP_001541543.1| - 0.016 15.4 0.0 0.04 14.1 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|159042291|ref|YP_001541543.1| - 0.024 14.3 0.2 0.1 12.3 0.2 2.0 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|159042291|ref|YP_001541543.1| - 0.033 13.1 0.0 0.051 12.4 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|159042291|ref|YP_001541543.1| - 0.041 13.2 0.3 0.11 11.8 0.1 1.9 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.16 gi|159042291|ref|YP_001541543.1| - 0.058 12.8 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|159042291|ref|YP_001541543.1| - 0.074 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 KR domain Pyr_redox_2 PF07992.9 gi|159042291|ref|YP_001541543.1| - 0.12 12.2 0.7 0.83 9.4 0.4 2.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|159042292|ref|YP_001541544.1| - 2.2e-20 72.7 0.1 6.6e-20 71.2 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|159042292|ref|YP_001541544.1| - 0.00011 22.5 0.2 0.00032 21.0 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|159042292|ref|YP_001541544.1| - 0.0013 17.6 0.1 0.002 17.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|159042292|ref|YP_001541544.1| - 0.0028 17.0 0.1 0.0061 15.9 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|159042292|ref|YP_001541544.1| - 0.012 15.1 0.0 0.16 11.5 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.19 gi|159042292|ref|YP_001541544.1| - 0.018 13.9 1.1 0.026 13.4 0.7 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase Spermine_synth PF01564.12 gi|159042292|ref|YP_001541544.1| - 0.029 13.2 0.0 0.043 12.7 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase CLTH PF10607.4 gi|159042292|ref|YP_001541544.1| - 0.03 14.0 0.0 0.096 12.3 0.0 1.7 2 0 0 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain 3HCDH_N PF02737.13 gi|159042292|ref|YP_001541544.1| - 0.093 12.3 0.1 0.25 10.9 0.1 1.7 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|159042292|ref|YP_001541544.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain GIDA PF01134.17 gi|159042292|ref|YP_001541544.1| - 0.11 11.2 0.2 0.19 10.5 0.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Rossmann-like PF10727.4 gi|159042292|ref|YP_001541544.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain Benyvirus_P25 PF05744.6 gi|159042293|ref|YP_001541545.1| - 0.17 11.2 1.6 0.29 10.4 0.5 1.8 2 0 0 2 2 2 0 Benyvirus P25/P26 protein SP_C-Propep PF08999.5 gi|159042294|ref|YP_001541546.1| - 0.15 11.5 0.7 0.31 10.5 0.5 1.6 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide MoCF_biosynth PF00994.19 gi|159042295|ref|YP_001541547.1| - 1.1e-28 99.4 0.1 1.3e-28 99.1 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF2124 PF09897.4 gi|159042295|ref|YP_001541547.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) Asp_Glu_race PF01177.17 gi|159042295|ref|YP_001541547.1| - 0.14 12.0 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase DUF1056 PF06341.6 gi|159042297|ref|YP_001541549.1| - 3.3 7.8 9.0 1.7 8.6 1.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) Iso_dh PF00180.15 gi|159042299|ref|YP_001541551.1| - 8e-98 327.5 0.0 9.3e-98 327.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Exo_endo_phos PF03372.18 gi|159042300|ref|YP_001541552.1| - 4.3e-21 75.9 0.1 5.1e-21 75.7 0.1 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|159042300|ref|YP_001541552.1| - 4.9e-14 51.9 0.0 6.7e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase ALAD PF00490.16 gi|159042301|ref|YP_001541553.1| - 1.5e-144 480.8 0.1 1.7e-144 480.6 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF2430 PF10353.4 gi|159042301|ref|YP_001541553.1| - 0.12 12.6 0.1 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2430) Metallophos PF00149.23 gi|159042302|ref|YP_001541554.1| - 9.2e-27 93.7 1.1 1.2e-26 93.3 0.8 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|159042302|ref|YP_001541554.1| - 1.2e-06 28.4 0.0 1.6e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF3461 PF11944.3 gi|159042302|ref|YP_001541554.1| - 0.14 12.0 0.4 0.3 10.9 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3461) Proteasome PF00227.21 gi|159042303|ref|YP_001541555.1| - 2e-58 196.8 0.1 3.3e-58 196.0 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|159042303|ref|YP_001541555.1| - 4.1e-10 38.7 0.1 4.1e-10 38.7 0.1 2.5 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Armet PF10208.4 gi|159042303|ref|YP_001541555.1| - 0.13 11.9 0.2 0.76 9.4 0.0 1.9 2 0 0 2 2 2 0 Degradation arginine-rich protein for mis-folding Mucin PF01456.12 gi|159042304|ref|YP_001541556.1| - 0.21 11.3 22.1 1.2 8.8 15.3 2.3 1 1 0 1 1 1 0 Mucin-like glycoprotein Telomere_Sde2 PF13019.1 gi|159042304|ref|YP_001541556.1| - 6.9 6.3 7.3 11 5.6 5.1 1.4 1 0 0 1 1 1 0 Telomere stability and silencing Aldo_ket_red PF00248.16 gi|159042305|ref|YP_001541557.1| - 9.1e-71 237.9 0.0 1e-70 237.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GTP_EFTU PF00009.22 gi|159042306|ref|YP_001541558.1| - 4e-54 182.8 0.0 5.7e-54 182.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|159042306|ref|YP_001541558.1| - 3.4e-29 100.9 0.0 1.4e-28 98.9 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|159042306|ref|YP_001541558.1| - 6.4e-19 67.8 5.7 1.3e-18 66.8 2.3 2.8 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|159042306|ref|YP_001541558.1| - 1.7e-10 40.4 1.1 4.3e-10 39.0 0.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|159042306|ref|YP_001541558.1| - 7.2e-06 25.9 0.0 1.9e-05 24.5 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|159042306|ref|YP_001541558.1| - 0.0044 16.3 0.3 0.18 11.0 0.1 3.0 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|159042306|ref|YP_001541558.1| - 0.013 16.0 0.0 0.047 14.1 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein RVT_3 PF13456.1 gi|159042306|ref|YP_001541558.1| - 0.022 14.5 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Reverse transcriptase-like Glycos_transf_1 PF00534.15 gi|159042307|ref|YP_001541559.1| - 9.5e-19 67.4 0.1 1.4e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|159042307|ref|YP_001541559.1| - 7.4e-10 39.1 0.1 1.2e-09 38.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|159042307|ref|YP_001541559.1| - 0.0022 17.7 0.0 0.0059 16.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 tRNA_int_endo PF01974.12 gi|159042308|ref|YP_001541560.1| - 6e-07 29.1 0.0 1.2e-06 28.2 0.0 1.5 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|159042308|ref|YP_001541560.1| - 0.014 14.9 0.0 0.035 13.6 0.0 1.8 1 0 0 1 1 1 0 tRNA intron endonuclease, N-terminal domain STAS PF01740.16 gi|159042309|ref|YP_001541561.1| - 0.069 12.5 0.0 0.66 9.4 0.0 2.1 1 1 1 2 2 2 0 STAS domain STAS_2 PF13466.1 gi|159042309|ref|YP_001541561.1| - 0.085 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 STAS domain Ribosomal_S8 PF00410.14 gi|159042310|ref|YP_001541562.1| - 1.7e-25 89.3 0.0 2.3e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Zn-ribbon_8 PF09723.5 gi|159042311|ref|YP_001541563.1| - 0.01 15.7 0.0 0.039 13.9 0.0 1.8 2 0 0 2 2 2 0 Zinc ribbon domain DUF4519 PF15012.1 gi|159042311|ref|YP_001541563.1| - 0.38 10.6 4.2 0.7 9.8 2.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) UPF0547 PF10571.4 gi|159042311|ref|YP_001541563.1| - 0.46 10.2 0.2 0.46 10.2 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1512 PF07431.7 gi|159042312|ref|YP_001541564.1| - 2.5e-110 368.5 0.0 2.9e-110 368.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Alba PF01918.16 gi|159042312|ref|YP_001541564.1| - 0.07 12.7 0.3 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 Alba DUF3829 PF12889.2 gi|159042312|ref|YP_001541564.1| - 0.11 11.6 1.4 0.93 8.6 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3829) Fe_dep_repr_C PF02742.10 gi|159042313|ref|YP_001541565.1| - 2.4e-23 81.5 0.2 1.6e-22 78.9 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|159042313|ref|YP_001541565.1| - 8.2e-07 28.9 0.2 2.7e-06 27.2 0.1 1.8 2 0 0 2 2 2 1 FeoA domain HTH_IclR PF09339.5 gi|159042313|ref|YP_001541565.1| - 0.00039 19.9 0.0 0.0008 18.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|159042313|ref|YP_001541565.1| - 0.001 18.9 0.0 0.0061 16.4 0.0 2.1 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|159042313|ref|YP_001541565.1| - 0.0023 17.6 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|159042313|ref|YP_001541565.1| - 0.0049 16.6 0.0 0.011 15.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|159042313|ref|YP_001541565.1| - 0.036 14.3 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PGP_phosphatase PF09419.5 gi|159042313|ref|YP_001541565.1| - 0.036 13.4 0.0 5.4 6.3 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase Topoisom_bac PF01131.15 gi|159042313|ref|YP_001541565.1| - 0.082 11.7 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase MarR_2 PF12802.2 gi|159042313|ref|YP_001541565.1| - 0.095 12.3 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|159042313|ref|YP_001541565.1| - 0.11 12.1 0.0 0.46 10.1 0.0 2.1 1 1 0 1 1 1 0 HTH domain PUL PF08324.6 gi|159042314|ref|YP_001541566.1| - 0.00074 18.3 0.3 0.0014 17.4 0.0 1.6 1 1 1 2 2 2 1 PUL domain CLTH PF10607.4 gi|159042314|ref|YP_001541566.1| - 0.021 14.4 0.1 0.82 9.3 0.1 2.1 1 1 0 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain Ribosomal_L10 PF00466.15 gi|159042315|ref|YP_001541567.1| - 4.8e-23 80.9 0.0 8.2e-23 80.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_S3Ae PF01015.13 gi|159042316|ref|YP_001541568.1| - 1e-64 217.4 0.5 1.2e-64 217.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family adh_short PF00106.20 gi|159042318|ref|YP_001541570.1| - 1.3e-31 109.7 0.1 1.9e-31 109.2 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|159042318|ref|YP_001541570.1| - 1.7e-24 86.9 0.0 2.1e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|159042318|ref|YP_001541570.1| - 2.8e-09 36.8 0.0 4.1e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|159042318|ref|YP_001541570.1| - 0.033 13.6 0.1 0.055 12.9 0.1 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family HAD PF12710.2 gi|159042318|ref|YP_001541570.1| - 0.11 12.6 0.3 0.27 11.3 0.1 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase ILVD_EDD PF00920.16 gi|159042319|ref|YP_001541571.1| - 7.3e-214 711.0 0.2 8.3e-214 710.8 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family Antitoxin-MazE PF04014.13 gi|159042319|ref|YP_001541571.1| - 0.065 12.9 4.8 5.6 6.8 0.0 3.1 3 0 0 3 3 3 0 Antidote-toxin recognition MazE Mem_trans PF03547.13 gi|159042320|ref|YP_001541572.1| - 0.027 12.7 12.0 0.026 12.8 7.6 1.4 1 1 0 1 1 1 0 Membrane transport protein SpoIIIAC PF06686.6 gi|159042320|ref|YP_001541572.1| - 0.14 11.9 0.6 0.14 11.9 0.4 3.5 3 1 0 3 3 3 0 Stage III sporulation protein AC/AD protein family MgtC PF02308.11 gi|159042320|ref|YP_001541572.1| - 2 8.2 14.8 5.5 6.8 10.3 1.7 1 1 0 1 1 1 0 MgtC family Clathrin-link PF09268.5 gi|159042321|ref|YP_001541573.1| - 0.093 11.7 0.8 0.13 11.3 0.0 1.7 2 0 0 2 2 2 0 Clathrin, heavy-chain linker Acetyltransf_9 PF13527.1 gi|159042322|ref|YP_001541574.1| - 3.4e-15 56.0 0.1 5.8e-15 55.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|159042322|ref|YP_001541574.1| - 3.5e-09 36.6 0.2 9.1e-09 35.3 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|159042322|ref|YP_001541574.1| - 4.4e-05 23.4 0.2 7.9e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|159042322|ref|YP_001541574.1| - 0.00032 20.7 0.1 0.00082 19.4 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|159042322|ref|YP_001541574.1| - 0.0022 17.7 0.1 0.0049 16.6 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein MFS_1 PF07690.11 gi|159042323|ref|YP_001541575.1| - 3e-42 144.5 56.9 3e-42 144.5 39.4 2.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Longin PF13774.1 gi|159042323|ref|YP_001541575.1| - 0.12 11.9 0.4 12 5.5 0.0 2.3 2 0 0 2 2 2 0 Regulated-SNARE-like domain AAA_assoc_C PF09821.4 gi|159042325|ref|YP_001541577.1| - 0.013 15.7 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 C-terminal AAA-associated domain HTH_45 PF14947.1 gi|159042325|ref|YP_001541577.1| - 0.019 14.7 0.4 1.7 8.5 0.0 2.7 2 1 1 3 3 3 0 Winged helix-turn-helix NMD3 PF04981.8 gi|159042326|ref|YP_001541578.1| - 1.4e-46 158.5 0.2 1.8e-46 158.2 0.2 1.1 1 0 0 1 1 1 1 NMD3 family EPSP_synthase PF00275.15 gi|159042326|ref|YP_001541578.1| - 0.018 13.4 0.0 0.027 12.9 0.0 1.2 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DZR PF12773.2 gi|159042326|ref|YP_001541578.1| - 0.02 14.6 4.9 5 7.0 3.4 2.9 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|159042326|ref|YP_001541578.1| - 0.041 14.1 5.6 5.1 7.4 2.5 3.1 3 1 0 3 3 3 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|159042326|ref|YP_001541578.1| - 0.19 11.4 4.9 11 5.8 0.7 3.2 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Rpr2 PF04032.11 gi|159042326|ref|YP_001541578.1| - 0.27 11.1 2.1 13 5.6 0.0 3.1 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1272 PF06906.6 gi|159042326|ref|YP_001541578.1| - 0.38 10.6 2.3 31 4.4 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) Rad50_zn_hook PF04423.9 gi|159042326|ref|YP_001541578.1| - 0.82 9.1 3.4 3.9 7.0 0.2 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-TFIIB PF13453.1 gi|159042326|ref|YP_001541578.1| - 2.4 7.4 7.8 11 5.3 0.0 3.2 2 1 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|159042326|ref|YP_001541578.1| - 5.4 6.6 7.6 30 4.2 0.0 3.8 4 0 0 4 4 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|159042326|ref|YP_001541578.1| - 8.9 6.1 12.7 1.5 8.5 0.0 3.5 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Gln-synt_C PF00120.19 gi|159042327|ref|YP_001541579.1| - 2.2e-79 266.2 0.0 2.8e-79 265.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|159042327|ref|YP_001541579.1| - 8.2e-15 54.1 0.1 1.7e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ABC_tran PF00005.22 gi|159042328|ref|YP_001541580.1| - 3.2e-24 85.7 0.0 4.1e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159042328|ref|YP_001541580.1| - 2.3e-16 60.6 0.2 2.5e-10 40.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|159042328|ref|YP_001541580.1| - 5.2e-08 32.3 0.0 0.00037 19.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|159042328|ref|YP_001541580.1| - 1.7e-06 27.3 0.0 0.0043 16.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain NTPase_1 PF03266.10 gi|159042328|ref|YP_001541580.1| - 2.9e-05 23.8 0.1 0.00017 21.3 0.1 2.0 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|159042328|ref|YP_001541580.1| - 3.9e-05 23.7 0.0 5.4e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|159042328|ref|YP_001541580.1| - 0.00011 23.0 0.1 0.00013 22.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|159042328|ref|YP_001541580.1| - 0.00011 22.3 0.0 0.00042 20.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|159042328|ref|YP_001541580.1| - 0.00014 21.6 0.0 0.00027 20.7 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|159042328|ref|YP_001541580.1| - 0.00019 21.8 0.0 0.00034 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|159042328|ref|YP_001541580.1| - 0.0004 20.6 0.0 0.0027 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|159042328|ref|YP_001541580.1| - 0.00046 19.7 0.0 0.001 18.6 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|159042328|ref|YP_001541580.1| - 0.00057 19.3 0.1 0.0011 18.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|159042328|ref|YP_001541580.1| - 0.00059 18.9 0.0 0.0011 18.0 0.0 1.4 2 0 0 2 2 1 1 Zeta toxin AAA_22 PF13401.1 gi|159042328|ref|YP_001541580.1| - 0.00063 19.8 0.2 0.0011 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|159042328|ref|YP_001541580.1| - 0.0016 17.8 0.7 0.011 15.1 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|159042328|ref|YP_001541580.1| - 0.0016 18.1 0.4 0.0035 17.0 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain NACHT PF05729.7 gi|159042328|ref|YP_001541580.1| - 0.0019 17.8 0.2 0.0059 16.2 0.2 1.9 1 1 0 1 1 1 1 NACHT domain AAA_30 PF13604.1 gi|159042328|ref|YP_001541580.1| - 0.0019 17.7 0.1 0.0055 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|159042328|ref|YP_001541580.1| - 0.0021 17.0 0.0 0.0032 16.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NB-ARC PF00931.17 gi|159042328|ref|YP_001541580.1| - 0.0027 16.6 0.1 0.01 14.7 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain cobW PF02492.14 gi|159042328|ref|YP_001541580.1| - 0.0044 16.4 0.1 0.0087 15.5 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|159042328|ref|YP_001541580.1| - 0.0047 16.8 0.1 0.0092 15.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|159042328|ref|YP_001541580.1| - 0.0048 16.0 0.0 0.0071 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|159042328|ref|YP_001541580.1| - 0.0049 16.2 0.0 0.26 10.7 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|159042328|ref|YP_001541580.1| - 0.0084 16.0 0.0 0.017 15.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|159042328|ref|YP_001541580.1| - 0.015 15.1 0.0 0.043 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|159042328|ref|YP_001541580.1| - 0.016 14.8 0.2 0.023 14.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|159042328|ref|YP_001541580.1| - 0.02 14.5 0.0 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase MobB PF03205.9 gi|159042328|ref|YP_001541580.1| - 0.02 14.5 0.1 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|159042328|ref|YP_001541580.1| - 0.031 13.7 0.0 0.068 12.6 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Rad17 PF03215.10 gi|159042328|ref|YP_001541580.1| - 0.041 12.5 0.0 0.054 12.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|159042328|ref|YP_001541580.1| - 0.046 13.6 0.0 0.19 11.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|159042328|ref|YP_001541580.1| - 0.051 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|159042328|ref|YP_001541580.1| - 0.062 12.7 0.0 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain Miro PF08477.8 gi|159042328|ref|YP_001541580.1| - 0.066 13.7 0.0 0.13 12.8 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|159042328|ref|YP_001541580.1| - 0.068 13.1 0.2 0.2 11.6 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|159042328|ref|YP_001541580.1| - 0.12 12.0 0.2 0.41 10.3 0.0 1.9 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) Pox_A32 PF04665.7 gi|159042328|ref|YP_001541580.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Molydop_binding PF01568.16 gi|159042329|ref|YP_001541581.1| - 6e-05 22.8 1.0 0.0026 17.5 0.3 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain Peptidase_A24 PF01478.13 gi|159042330|ref|YP_001541582.1| - 4.3e-05 23.6 5.7 4.3e-05 23.6 3.9 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family Arc_PepC_II PF06847.6 gi|159042330|ref|YP_001541582.1| - 0.013 15.8 0.2 0.013 15.8 0.2 2.2 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II DEAD PF00270.24 gi|159042331|ref|YP_001541583.1| - 5.6e-43 146.3 0.0 5.5e-41 139.8 0.0 2.1 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|159042331|ref|YP_001541583.1| - 4e-24 84.2 0.1 8.8e-24 83.1 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|159042331|ref|YP_001541583.1| - 0.00015 21.6 0.0 0.00031 20.6 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PALP PF00291.20 gi|159042332|ref|YP_001541584.1| - 2.6e-63 214.0 0.2 3.1e-63 213.8 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.7 gi|159042332|ref|YP_001541584.1| - 2.1e-05 23.7 0.7 3.9e-05 22.8 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.14 gi|159042332|ref|YP_001541584.1| - 0.00091 18.8 0.1 0.0017 18.0 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|159042332|ref|YP_001541584.1| - 0.002 17.5 7.2 0.0039 16.6 5.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|159042332|ref|YP_001541584.1| - 0.0021 17.5 1.1 0.61 9.6 0.2 2.5 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|159042332|ref|YP_001541584.1| - 0.015 14.9 0.9 0.029 14.0 0.6 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PK_C PF02887.11 gi|159042332|ref|YP_001541584.1| - 0.016 14.7 0.1 0.029 13.9 0.1 1.4 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain RRN7 PF11781.3 gi|159042332|ref|YP_001541584.1| - 0.029 13.8 0.6 0.054 12.9 0.4 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|159042332|ref|YP_001541584.1| - 0.051 13.4 1.8 0.092 12.5 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|159042332|ref|YP_001541584.1| - 0.073 12.8 4.5 2.1 8.2 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|159042332|ref|YP_001541584.1| - 0.09 12.7 3.7 0.31 11.0 2.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|159042332|ref|YP_001541584.1| - 0.1 12.6 1.6 6.3 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|159042332|ref|YP_001541584.1| - 0.12 11.5 6.4 0.56 9.4 4.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|159042332|ref|YP_001541584.1| - 0.14 11.9 0.8 8.1 6.2 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF1610 PF07754.6 gi|159042332|ref|YP_001541584.1| - 0.4 10.8 10.9 2.5 8.3 2.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-HIT PF04438.11 gi|159042332|ref|YP_001541584.1| - 0.41 10.3 3.3 5 6.8 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-Mss51 PF13824.1 gi|159042332|ref|YP_001541584.1| - 1.4 8.8 4.3 4.2 7.3 3.0 1.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_5 PF13719.1 gi|159042332|ref|YP_001541584.1| - 1.8 8.2 4.4 76 3.0 0.4 2.5 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|159042332|ref|YP_001541584.1| - 1.9 8.4 4.7 18 5.2 3.3 2.3 1 1 0 1 1 1 0 Rubredoxin zinc_ribbon_4 PF13717.1 gi|159042332|ref|YP_001541584.1| - 2.8 7.7 4.8 82 3.0 0.4 2.6 1 1 1 2 2 2 0 zinc-ribbon domain SCP2 PF02036.12 gi|159042333|ref|YP_001541585.1| - 4.9e-12 46.0 0.0 5.9e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|159042333|ref|YP_001541585.1| - 3.2e-05 23.8 0.0 3.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Asparaginase_2 PF01112.13 gi|159042335|ref|YP_001541587.1| - 5.6e-71 238.8 2.8 7e-71 238.5 2.0 1.1 1 0 0 1 1 1 1 Asparaginase DUF1628 PF07790.6 gi|159042337|ref|YP_001541589.1| - 0.018 15.7 1.3 0.057 14.1 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) SP_C-Propep PF08999.5 gi|159042337|ref|YP_001541589.1| - 0.021 14.3 0.7 0.047 13.1 0.5 1.6 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide DUF1389 PF07146.6 gi|159042337|ref|YP_001541589.1| - 0.045 12.8 0.1 0.062 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1389) KduI PF04962.7 gi|159042338|ref|YP_001541590.1| - 2.4e-26 92.3 0.3 4.9e-26 91.3 0.2 1.4 1 1 0 1 1 1 1 KduI/IolB family AA_permease_2 PF13520.1 gi|159042339|ref|YP_001541591.1| - 1.5e-32 112.6 50.9 2.1e-32 112.2 35.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|159042339|ref|YP_001541591.1| - 4.3e-32 111.0 56.0 3.2e-31 108.1 38.8 1.9 1 1 0 1 1 1 1 Amino acid permease Aldedh PF00171.17 gi|159042340|ref|YP_001541592.1| - 2.2e-166 553.7 0.0 2.5e-166 553.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|159042340|ref|YP_001541592.1| - 2e-06 26.8 0.0 2.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) P22_Cro PF14549.1 gi|159042340|ref|YP_001541592.1| - 0.023 14.4 0.0 0.056 13.1 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro MFS_1 PF07690.11 gi|159042341|ref|YP_001541593.1| - 1.1e-40 139.4 43.6 1.1e-40 139.4 30.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF137 PF02006.11 gi|159042342|ref|YP_001541594.1| - 2.2e-80 268.2 2.7 2.7e-80 267.9 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Pantoate_transf PF02548.10 gi|159042343|ref|YP_001541595.1| - 4.9e-111 370.0 0.0 5.6e-111 369.8 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|159042343|ref|YP_001541595.1| - 5.6e-08 32.2 1.1 5.3e-07 29.0 0.8 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Robl_LC7 PF03259.12 gi|159042343|ref|YP_001541595.1| - 0.033 13.7 0.0 0.29 10.7 0.0 2.1 2 0 0 2 2 2 0 Roadblock/LC7 domain Asp_protease_2 PF13650.1 gi|159042344|ref|YP_001541596.1| - 2.2e-09 37.6 0.2 3.6e-09 36.9 0.1 1.5 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|159042344|ref|YP_001541596.1| - 2.1e-07 30.6 0.1 3.8e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|159042344|ref|YP_001541596.1| - 3.2e-05 23.7 0.1 3.7e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp PF00026.18 gi|159042344|ref|YP_001541596.1| - 0.056 12.6 0.0 0.056 12.6 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease Peptidase_A3 PF02160.10 gi|159042344|ref|YP_001541596.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) GHMP_kinases_N PF00288.21 gi|159042346|ref|YP_001541598.1| - 3.2e-06 27.1 0.3 5.2e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.6 gi|159042346|ref|YP_001541598.1| - 0.5 10.0 2.9 0.37 10.4 0.3 1.8 1 1 1 2 2 2 0 Translocated intimin receptor (Tir) C-terminus ApbA_C PF08546.6 gi|159042347|ref|YP_001541599.1| - 1.4e-33 115.5 0.0 2.2e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|159042347|ref|YP_001541599.1| - 1.5e-13 50.4 0.5 1.5e-13 50.4 0.4 2.2 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA SNO PF01174.14 gi|159042348|ref|YP_001541600.1| - 2.4e-45 154.4 0.0 2.7e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.12 gi|159042348|ref|YP_001541600.1| - 7.9e-08 32.1 0.0 1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.9 gi|159042348|ref|YP_001541600.1| - 4.9e-07 29.4 0.0 6.9e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|159042348|ref|YP_001541600.1| - 0.00084 18.8 0.0 0.0046 16.4 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DUF4066 PF13278.1 gi|159042348|ref|YP_001541600.1| - 0.1 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase SOR_SNZ PF01680.12 gi|159042349|ref|YP_001541601.1| - 2.9e-89 298.1 1.2 4.1e-89 297.6 0.8 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|159042349|ref|YP_001541601.1| - 4e-06 26.0 2.7 4.7e-06 25.8 0.1 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|159042349|ref|YP_001541601.1| - 0.00054 19.2 0.8 1.1 8.5 0.0 3.2 2 1 1 3 3 3 2 Histidine biosynthesis protein NMO PF03060.10 gi|159042349|ref|YP_001541601.1| - 0.0017 17.6 4.7 0.0021 17.2 0.2 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|159042349|ref|YP_001541601.1| - 0.0024 16.9 0.0 0.017 14.1 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|159042349|ref|YP_001541601.1| - 0.0049 15.7 1.0 0.91 8.2 0.0 3.0 3 0 0 3 3 3 1 Dihydrouridine synthase (Dus) OMPdecase PF00215.19 gi|159042349|ref|YP_001541601.1| - 0.047 13.0 0.2 0.48 9.7 0.0 2.4 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family CbiG_C PF01890.11 gi|159042349|ref|YP_001541601.1| - 0.088 13.0 0.0 0.32 11.2 0.0 2.1 2 0 0 2 2 2 0 Cobalamin synthesis G C-terminus Glu_synthase PF01645.12 gi|159042349|ref|YP_001541601.1| - 0.1 11.4 0.4 0.25 10.2 0.1 1.6 1 1 1 2 2 2 0 Conserved region in glutamate synthase SpoV PF08183.6 gi|159042349|ref|YP_001541601.1| - 0.14 11.9 0.3 14 5.5 0.0 2.9 2 0 0 2 2 2 0 Stage V sporulation protein family PGK PF00162.14 gi|159042350|ref|YP_001541602.1| - 1.4e-113 379.3 0.1 1.6e-113 379.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_N PF00044.19 gi|159042351|ref|YP_001541603.1| - 1.6e-18 67.0 0.4 8.3e-18 64.7 0.3 2.2 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|159042351|ref|YP_001541603.1| - 1.2e-16 60.6 2.8 1.9e-16 59.9 1.9 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|159042351|ref|YP_001541603.1| - 4.8e-13 49.1 0.4 1.2e-12 47.8 0.2 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|159042351|ref|YP_001541603.1| - 5.4e-05 23.6 1.1 0.0002 21.8 0.1 2.4 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|159042351|ref|YP_001541603.1| - 7.5e-05 23.1 0.7 0.00039 20.7 0.0 2.6 3 0 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|159042351|ref|YP_001541603.1| - 0.0034 17.6 0.0 0.013 15.7 0.0 2.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|159042351|ref|YP_001541603.1| - 0.0037 16.4 0.8 0.083 12.0 0.1 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|159042351|ref|YP_001541603.1| - 0.16 11.8 0.8 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Usp PF00582.21 gi|159042352|ref|YP_001541604.1| - 4e-21 75.6 0.1 9.1e-21 74.5 0.0 1.5 1 1 0 1 1 1 1 Universal stress protein family DNA_pol3_delta2 PF13177.1 gi|159042352|ref|YP_001541604.1| - 0.035 13.7 0.2 0.046 13.3 0.2 1.2 1 0 0 1 1 1 0 DNA polymerase III, delta subunit Herpes_MCP PF03122.9 gi|159042352|ref|YP_001541604.1| - 0.041 11.2 0.0 0.052 10.8 0.0 1.0 1 0 0 1 1 1 0 Herpes virus major capsid protein NadA PF02445.11 gi|159042353|ref|YP_001541605.1| - 1.3e-103 345.9 0.0 1.4e-103 345.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein LysR_substrate PF03466.15 gi|159042353|ref|YP_001541605.1| - 0.083 11.9 0.0 4.5 6.3 0.0 2.2 2 0 0 2 2 2 0 LysR substrate binding domain PGK PF00162.14 gi|159042353|ref|YP_001541605.1| - 0.095 11.2 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoglycerate kinase FAD_binding_2 PF00890.19 gi|159042354|ref|YP_001541606.1| - 9.7e-76 255.2 0.1 1.2e-75 254.9 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|159042354|ref|YP_001541606.1| - 1e-13 51.2 0.1 5.9e-12 45.5 0.1 2.5 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|159042354|ref|YP_001541606.1| - 1.2e-12 47.4 0.3 6.4e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|159042354|ref|YP_001541606.1| - 4e-12 46.4 0.0 4.2e-11 43.1 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|159042354|ref|YP_001541606.1| - 2.2e-07 30.1 0.1 0.012 14.5 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|159042354|ref|YP_001541606.1| - 8.3e-05 22.4 0.4 0.0081 15.9 0.2 3.1 2 1 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|159042354|ref|YP_001541606.1| - 0.00057 19.8 0.5 0.0016 18.4 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|159042354|ref|YP_001541606.1| - 0.0062 15.0 1.6 0.071 11.5 0.5 2.6 2 1 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.9 gi|159042354|ref|YP_001541606.1| - 0.036 12.7 0.5 4.6 5.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase SPASM PF13186.1 gi|159042355|ref|YP_001541607.1| - 2.7e-16 59.6 1.6 6.4e-16 58.4 1.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|159042355|ref|YP_001541607.1| - 3.6e-07 30.4 0.0 7e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Asparaginase PF00710.15 gi|159042356|ref|YP_001541608.1| - 2.1e-88 296.2 0.0 2.6e-88 295.9 0.0 1.1 1 0 0 1 1 1 1 Asparaginase COXG PF06240.8 gi|159042357|ref|YP_001541609.1| - 1.2e-21 76.8 0.0 1.5e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|159042357|ref|YP_001541609.1| - 5.7e-06 26.5 0.0 6.5e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport SpoA PF01052.15 gi|159042357|ref|YP_001541609.1| - 0.018 14.5 0.1 0.041 13.4 0.0 1.6 1 1 0 1 1 1 0 Surface presentation of antigens (SPOA) DAO PF01266.19 gi|159042358|ref|YP_001541610.1| - 4.6e-51 173.8 0.3 5.3e-51 173.6 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|159042358|ref|YP_001541610.1| - 8.8e-05 21.5 1.9 0.00017 20.5 1.1 1.7 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|159042358|ref|YP_001541610.1| - 0.00012 20.6 0.5 0.00021 19.8 0.2 1.4 1 1 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|159042358|ref|YP_001541610.1| - 0.00018 20.6 1.2 0.0014 17.7 0.7 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|159042358|ref|YP_001541610.1| - 0.00027 20.9 2.4 0.00029 20.8 0.5 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|159042358|ref|YP_001541610.1| - 0.00027 20.1 0.2 0.0007 18.7 0.1 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|159042358|ref|YP_001541610.1| - 0.00031 20.6 0.0 0.00056 19.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|159042358|ref|YP_001541610.1| - 0.00099 18.2 1.7 0.0014 17.7 1.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|159042358|ref|YP_001541610.1| - 0.0033 16.3 0.4 0.0062 15.4 0.3 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|159042358|ref|YP_001541610.1| - 0.15 12.5 1.0 0.43 11.0 0.7 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|159042358|ref|YP_001541610.1| - 0.18 10.4 0.4 0.25 9.9 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FGGY_N PF00370.16 gi|159042359|ref|YP_001541611.1| - 6.3e-69 231.9 0.0 8.6e-69 231.5 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|159042359|ref|YP_001541611.1| - 4.1e-56 189.7 0.1 1e-55 188.4 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Stimulus_sens_1 PF13756.1 gi|159042359|ref|YP_001541611.1| - 0.023 15.0 0.0 9.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Stimulus-sensing domain BcrAD_BadFG PF01869.15 gi|159042359|ref|YP_001541611.1| - 0.04 13.2 0.0 0.17 11.1 0.0 1.9 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Aminotran_1_2 PF00155.16 gi|159042360|ref|YP_001541612.1| - 1.2e-18 67.2 0.0 1.5e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3922 PF13059.1 gi|159042360|ref|YP_001541612.1| - 0.016 15.3 0.0 0.064 13.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3992) Aminotran_5 PF00266.14 gi|159042360|ref|YP_001541612.1| - 0.04 12.6 0.0 0.06 12.0 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DUF1286 PF06939.6 gi|159042361|ref|YP_001541613.1| - 4.5e-20 71.9 7.5 4.5e-20 71.9 5.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) DUF457 PF04307.9 gi|159042361|ref|YP_001541613.1| - 0.00041 19.7 12.2 0.00091 18.5 8.5 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) 7TM_GPCR_Sru PF10322.4 gi|159042361|ref|YP_001541613.1| - 0.11 11.5 2.6 0.33 10.0 0.4 1.9 1 1 1 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Sru HTH_10 PF04967.7 gi|159042362|ref|YP_001541614.1| - 1.1e-16 60.1 0.1 1.8e-16 59.4 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Thioredoxin_6 PF13848.1 gi|159042362|ref|YP_001541614.1| - 3.2e-05 23.8 0.5 5.8e-05 22.9 0.3 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GerE PF00196.14 gi|159042362|ref|YP_001541614.1| - 0.00095 18.4 1.4 0.0016 17.7 0.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|159042362|ref|YP_001541614.1| - 0.0082 15.5 0.0 0.036 13.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0122 PF04297.9 gi|159042362|ref|YP_001541614.1| - 0.011 15.7 0.4 0.22 11.5 0.0 2.4 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|159042362|ref|YP_001541614.1| - 0.011 15.0 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|159042362|ref|YP_001541614.1| - 0.013 15.6 0.1 1.3 9.3 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|159042362|ref|YP_001541614.1| - 0.033 13.7 0.0 0.072 12.6 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_6 PF01418.12 gi|159042362|ref|YP_001541614.1| - 0.06 13.0 0.0 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_11 PF08279.7 gi|159042362|ref|YP_001541614.1| - 0.092 12.4 0.1 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_5 PF01022.15 gi|159042362|ref|YP_001541614.1| - 0.1 12.2 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MFS_1 PF07690.11 gi|159042363|ref|YP_001541615.1| - 6.2e-25 87.6 45.4 6.2e-25 87.6 31.4 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159042363|ref|YP_001541615.1| - 1.5e-24 86.3 31.6 2.1e-24 85.9 21.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|159042363|ref|YP_001541615.1| - 3.3e-05 22.4 8.0 3.3e-05 22.4 5.6 3.3 3 1 0 3 3 3 2 MFS/sugar transport protein DUF697 PF05128.7 gi|159042363|ref|YP_001541615.1| - 0.22 11.0 3.7 1.6 8.2 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF697) NAD_binding_2 PF03446.10 gi|159042364|ref|YP_001541616.1| - 1.3e-29 103.1 0.1 1.9e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|159042364|ref|YP_001541616.1| - 6.5e-20 71.4 0.0 1.2e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|159042364|ref|YP_001541616.1| - 2.7e-06 26.6 0.0 4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BCA_ABC_TP_C PF12399.3 gi|159042364|ref|YP_001541616.1| - 0.0046 16.6 0.0 0.3 10.8 0.0 2.4 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter F420_oxidored PF03807.12 gi|159042364|ref|YP_001541616.1| - 0.011 16.1 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|159042364|ref|YP_001541616.1| - 0.012 15.2 0.1 0.025 14.2 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFOR_C PF01314.13 gi|159042365|ref|YP_001541617.1| - 3.8e-119 397.8 0.0 2.4e-118 395.1 0.0 1.8 1 1 1 2 2 2 2 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|159042365|ref|YP_001541617.1| - 5.2e-70 234.9 1.0 5.2e-70 234.9 0.7 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain RHH_1 PF01402.16 gi|159042367|ref|YP_001541619.1| - 1.2e-06 28.1 0.4 1.8e-06 27.5 0.3 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF217 PF02697.9 gi|159042367|ref|YP_001541619.1| - 0.0001 22.4 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 MatP PF06303.7 gi|159042367|ref|YP_001541619.1| - 0.036 13.9 0.0 0.038 13.8 0.0 1.1 1 0 0 1 1 1 0 Organiser of macrodomain of Terminus of chromosome RelB PF04221.7 gi|159042367|ref|YP_001541619.1| - 0.075 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 RelB antitoxin G-gamma PF00631.17 gi|159042367|ref|YP_001541619.1| - 0.12 12.1 0.2 0.16 11.7 0.2 1.2 1 0 0 1 1 1 0 GGL domain NTP_transf_2 PF01909.18 gi|159042368|ref|YP_001541620.1| - 2.4e-08 34.1 0.0 2.8e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|159042368|ref|YP_001541620.1| - 0.085 12.4 0.0 0.18 11.3 0.0 1.6 1 1 1 2 2 2 0 Putative nucleotidyltransferase DUF294 Sugar_tr PF00083.19 gi|159042369|ref|YP_001541621.1| - 2.3e-22 79.2 35.0 3.2e-22 78.7 24.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|159042369|ref|YP_001541621.1| - 1.7e-19 69.8 44.3 1.7e-19 69.8 30.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|159042369|ref|YP_001541621.1| - 0.0023 16.3 40.5 0.0024 16.3 5.3 3.8 2 1 1 3 3 3 2 MFS/sugar transport protein Gly-zipper_Omp PF13488.1 gi|159042369|ref|YP_001541621.1| - 6.9 6.4 8.8 9.6 5.9 1.3 3.3 2 1 1 3 3 3 0 Glycine zipper ADH_N PF08240.7 gi|159042370|ref|YP_001541622.1| - 1.5e-23 82.5 0.8 2.8e-23 81.7 0.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|159042370|ref|YP_001541622.1| - 0.0079 15.7 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DHquinase_I PF01487.10 gi|159042371|ref|YP_001541623.1| - 4e-52 177.0 0.0 4.5e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Cupin_2 PF07883.6 gi|159042372|ref|YP_001541624.1| - 2.2e-18 65.4 0.1 2.9e-18 65.1 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|159042372|ref|YP_001541624.1| - 2.8e-07 30.0 0.0 4.1e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|159042372|ref|YP_001541624.1| - 5.8e-07 29.2 0.0 7.1e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|159042372|ref|YP_001541624.1| - 9.5e-05 22.1 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|159042372|ref|YP_001541624.1| - 0.00012 21.3 0.0 0.00018 20.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_7 PF12973.2 gi|159042372|ref|YP_001541624.1| - 0.0016 18.2 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain EutQ PF06249.7 gi|159042372|ref|YP_001541624.1| - 0.0076 15.7 0.0 0.0085 15.6 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Ectoine_synth PF06339.7 gi|159042372|ref|YP_001541624.1| - 0.029 14.3 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase GPI PF06560.6 gi|159042372|ref|YP_001541624.1| - 0.048 12.6 0.0 0.074 12.0 0.0 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) CDO_I PF05995.7 gi|159042372|ref|YP_001541624.1| - 0.16 11.1 0.1 1.4 8.0 0.1 2.0 1 1 0 1 1 1 0 Cysteine dioxygenase type I TPP_enzyme_N PF02776.13 gi|159042373|ref|YP_001541625.1| - 3.1e-59 199.3 0.1 5.4e-53 179.0 0.1 2.6 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|159042373|ref|YP_001541625.1| - 4.8e-40 136.4 0.0 1.4e-39 134.9 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|159042373|ref|YP_001541625.1| - 5.9e-39 133.0 0.0 7.1e-38 129.5 0.0 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HMGL-like PF00682.14 gi|159042374|ref|YP_001541626.1| - 2.4e-41 141.9 0.1 3.9e-41 141.2 0.1 1.2 1 0 0 1 1 1 1 HMGL-like CoA_transf_3 PF02515.12 gi|159042375|ref|YP_001541627.1| - 3e-60 202.7 0.0 3.8e-60 202.4 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III HTH_10 PF04967.7 gi|159042376|ref|YP_001541628.1| - 3.8e-21 74.3 0.1 4.6e-20 70.9 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_5 PF01022.15 gi|159042376|ref|YP_001541628.1| - 0.0025 17.4 0.0 0.01 15.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|159042376|ref|YP_001541628.1| - 0.0031 17.0 0.0 0.0084 15.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family MarR_2 PF12802.2 gi|159042376|ref|YP_001541628.1| - 0.0035 16.9 0.0 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|159042376|ref|YP_001541628.1| - 0.017 14.5 0.5 0.037 13.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|159042376|ref|YP_001541628.1| - 0.02 14.3 0.1 0.049 13.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|159042376|ref|YP_001541628.1| - 0.035 13.7 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain LacI PF00356.16 gi|159042376|ref|YP_001541628.1| - 0.077 12.6 0.0 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_Tnp_Tc3_1 PF11427.3 gi|159042376|ref|YP_001541628.1| - 0.087 12.4 0.2 1.6 8.4 0.0 2.6 2 1 0 2 2 2 0 Tc3 transposase UxuA PF03786.8 gi|159042377|ref|YP_001541629.1| - 1.7e-66 224.1 0.0 2.2e-66 223.8 0.0 1.1 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|159042377|ref|YP_001541629.1| - 2.1e-11 43.5 0.0 3.3e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HEPN PF05168.9 gi|159042377|ref|YP_001541629.1| - 4.3e-08 33.0 0.0 7.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 HEPN domain DUF917 PF06032.7 gi|159042379|ref|YP_001541631.1| - 1.1e-141 471.5 0.0 1.2e-141 471.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Hydantoinase_A PF01968.13 gi|159042380|ref|YP_001541632.1| - 6.5e-50 169.8 8.6 6.6e-50 169.8 2.1 2.6 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|159042380|ref|YP_001541632.1| - 5.6e-38 130.1 0.6 5.6e-38 130.1 0.4 2.6 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|159042380|ref|YP_001541632.1| - 4.1e-07 29.5 1.2 1.4e-05 24.5 0.1 2.8 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|159042380|ref|YP_001541632.1| - 1.6e-06 26.7 1.8 2.4e-05 22.8 0.2 2.6 3 0 0 3 3 3 1 MutL protein ROK PF00480.15 gi|159042380|ref|YP_001541632.1| - 0.12 12.1 2.7 1.2 8.9 0.1 2.8 3 1 1 4 4 4 0 ROK family DUF1177 PF06675.6 gi|159042381|ref|YP_001541633.1| - 1e-126 421.1 1.0 1.3e-126 420.8 0.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1177) AroM PF07302.6 gi|159042382|ref|YP_001541634.1| - 5.3e-81 271.1 2.1 5.9e-81 271.0 1.4 1.0 1 0 0 1 1 1 1 AroM protein DUF1995 PF09353.5 gi|159042382|ref|YP_001541634.1| - 0.048 13.2 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) Transp_cyt_pur PF02133.10 gi|159042383|ref|YP_001541635.1| - 1.3e-19 70.1 46.4 2.1e-19 69.3 32.1 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Radical_SAM PF04055.16 gi|159042384|ref|YP_001541636.1| - 2e-09 37.8 0.0 4.3e-09 36.7 0.0 1.5 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|159042384|ref|YP_001541636.1| - 0.068 12.6 4.0 3 7.3 3.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF650 PF04894.7 gi|159042385|ref|YP_001541637.1| - 4.1e-97 324.9 0.0 5.3e-97 324.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|159042385|ref|YP_001541637.1| - 9.1e-39 131.4 0.0 1.5e-38 130.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Ubiq_cyt_C_chap PF03981.7 gi|159042385|ref|YP_001541637.1| - 0.15 11.8 0.4 14 5.4 0.0 2.2 1 1 1 2 2 2 0 Ubiquinol-cytochrome C chaperone Ribosomal_L5_C PF00673.16 gi|159042386|ref|YP_001541638.1| - 8.1e-18 63.9 0.0 1.2e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|159042386|ref|YP_001541638.1| - 1.4e-12 47.2 0.0 2.1e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|159042387|ref|YP_001541639.1| - 2e-28 97.8 0.2 3.2e-28 97.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|159042387|ref|YP_001541639.1| - 1.2e-10 40.6 0.1 5.5e-10 38.5 0.0 2.0 2 0 0 2 2 2 1 S4 domain RS4NT PF08071.7 gi|159042387|ref|YP_001541639.1| - 2.8e-09 36.6 5.5 4.6e-09 35.9 3.8 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|159042388|ref|YP_001541640.1| - 1e-08 34.5 2.5 1e-08 34.5 1.7 2.2 2 0 0 2 2 2 1 KOW motif IF2_N PF04760.10 gi|159042389|ref|YP_001541641.1| - 0.058 13.0 0.8 0.74 9.5 0.4 2.7 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF3236 PF11576.3 gi|159042389|ref|YP_001541641.1| - 0.098 12.0 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) Nepo_coat_N PF03689.10 gi|159042390|ref|YP_001541642.1| - 0.011 15.3 0.0 0.036 13.7 0.0 1.8 1 1 1 2 2 2 0 Nepovirus coat protein, N-terminal domain VERL PF11386.3 gi|159042390|ref|YP_001541642.1| - 0.078 12.9 0.0 0.099 12.6 0.0 1.2 1 0 0 1 1 1 0 Vitelline envelope receptor for lysin PRC PF05239.11 gi|159042391|ref|YP_001541643.1| - 6.8e-07 29.0 6.4 0.0012 18.6 0.3 2.4 2 0 0 2 2 2 2 PRC-barrel domain Herpes_UL45 PF05473.7 gi|159042391|ref|YP_001541643.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.8 3 0 0 3 3 3 0 UL45 protein Cation_ATPase_C PF00689.16 gi|159042391|ref|YP_001541643.1| - 0.31 10.5 13.6 0.47 9.9 9.5 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus TMEM141 PF15110.1 gi|159042391|ref|YP_001541643.1| - 0.39 11.0 2.0 7.5 6.9 0.3 2.3 1 1 1 2 2 2 0 TMEM141 protein family Ribosomal_L6 PF00347.18 gi|159042392|ref|YP_001541644.1| - 2.6e-23 82.3 7.3 2.9e-12 46.9 0.4 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 AA_kinase PF00696.23 gi|159042393|ref|YP_001541645.1| - 2.9e-29 102.3 0.1 3.3e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family UPF0051 PF01458.12 gi|159042394|ref|YP_001541646.1| - 1.1e-42 146.0 1.1 1.6e-42 145.5 0.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|159042395|ref|YP_001541647.1| - 2.1e-63 213.8 0.2 2.9e-63 213.3 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|159042396|ref|YP_001541648.1| - 5e-22 78.6 0.0 6.6e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159042396|ref|YP_001541648.1| - 2.7e-12 47.2 0.0 3.8e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|159042396|ref|YP_001541648.1| - 0.00037 19.7 0.0 0.00072 18.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|159042396|ref|YP_001541648.1| - 0.00047 19.6 0.0 0.0013 18.1 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|159042396|ref|YP_001541648.1| - 0.0013 17.9 0.0 0.032 13.4 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|159042396|ref|YP_001541648.1| - 0.0017 18.7 0.1 0.0026 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|159042396|ref|YP_001541648.1| - 0.0033 16.5 0.0 0.32 9.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|159042396|ref|YP_001541648.1| - 0.0064 16.3 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|159042396|ref|YP_001541648.1| - 0.0079 15.6 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|159042396|ref|YP_001541648.1| - 0.012 15.8 0.1 0.051 13.7 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|159042396|ref|YP_001541648.1| - 0.015 14.9 0.0 0.036 13.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|159042396|ref|YP_001541648.1| - 0.036 13.7 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|159042396|ref|YP_001541648.1| - 0.039 14.0 0.0 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|159042396|ref|YP_001541648.1| - 0.069 13.0 0.0 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|159042396|ref|YP_001541648.1| - 0.075 11.4 0.0 1.9 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|159042396|ref|YP_001541648.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|159042396|ref|YP_001541648.1| - 0.12 11.1 0.1 0.23 10.2 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.14 gi|159042396|ref|YP_001541648.1| - 0.12 11.7 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Ribosomal_S14 PF00253.16 gi|159042397|ref|YP_001541649.1| - 9.9e-18 63.2 5.2 1.1e-17 63.1 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|159042397|ref|YP_001541649.1| - 0.0019 17.8 3.8 0.0028 17.2 2.6 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DUF1451 PF07295.6 gi|159042397|ref|YP_001541649.1| - 0.039 13.7 0.2 0.048 13.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS91 PF14319.1 gi|159042397|ref|YP_001541649.1| - 0.047 13.1 0.2 0.05 13.1 0.1 1.0 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF340 PF03956.8 gi|159042398|ref|YP_001541650.1| - 7.4e-44 149.3 29.5 3.9e-43 146.9 13.4 2.0 2 0 0 2 2 2 2 Membrane protein of unknown function (DUF340) CbiG_N PF11760.3 gi|159042398|ref|YP_001541650.1| - 0.0052 16.4 0.8 0.012 15.2 0.3 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal AAA PF00004.24 gi|159042399|ref|YP_001541651.1| - 3.8e-23 82.1 0.0 6.1e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|159042399|ref|YP_001541651.1| - 0.0012 17.8 0.0 0.0026 16.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|159042399|ref|YP_001541651.1| - 0.015 15.4 0.4 0.17 12.0 0.1 2.2 1 1 1 2 2 2 0 AAA domain TIP49 PF06068.8 gi|159042399|ref|YP_001541651.1| - 0.017 13.8 0.0 0.033 12.9 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus RuvB_N PF05496.7 gi|159042399|ref|YP_001541651.1| - 0.019 14.0 0.0 0.058 12.4 0.0 1.8 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|159042399|ref|YP_001541651.1| - 0.028 13.8 0.8 5.3 6.3 0.3 2.3 1 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|159042399|ref|YP_001541651.1| - 0.033 13.6 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|159042399|ref|YP_001541651.1| - 0.065 12.9 0.1 4.3 6.9 0.1 2.2 1 1 1 2 2 2 0 Archaeal ATPase AAA_5 PF07728.9 gi|159042399|ref|YP_001541651.1| - 0.073 12.7 0.6 0.33 10.6 0.1 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|159042399|ref|YP_001541651.1| - 0.093 11.9 0.1 0.19 10.9 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|159042399|ref|YP_001541651.1| - 0.11 12.2 1.3 0.37 10.5 0.0 2.5 3 0 0 3 3 3 0 Part of AAA domain AAA_16 PF13191.1 gi|159042399|ref|YP_001541651.1| - 0.13 12.2 0.2 0.6 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|159042399|ref|YP_001541651.1| - 0.16 11.0 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|159042399|ref|YP_001541651.1| - 0.19 10.8 0.0 0.42 9.6 0.0 1.5 2 0 0 2 2 2 0 KaiC AAA_2 PF07724.9 gi|159042399|ref|YP_001541651.1| - 0.22 11.4 0.0 0.65 9.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF2067 PF09840.4 gi|159042400|ref|YP_001541652.1| - 2.5e-28 98.8 3.3 3.1e-28 98.5 2.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Ribosomal_L7Ae PF01248.21 gi|159042401|ref|YP_001541653.1| - 3.8e-30 103.2 0.0 5.1e-30 102.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|159042401|ref|YP_001541653.1| - 0.0034 17.2 0.0 0.0044 16.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|159042401|ref|YP_001541653.1| - 0.022 14.5 0.1 0.038 13.7 0.0 1.5 1 1 0 1 1 1 0 PELOTA RNA binding domain Ribosomal_S28e PF01200.13 gi|159042402|ref|YP_001541654.1| - 1.2e-30 105.0 3.5 1.4e-30 104.8 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|159042402|ref|YP_001541654.1| - 0.096 12.4 0.9 0.75 9.6 0.1 2.5 2 1 1 3 3 3 0 KOW motif SBP_bac_5 PF00496.17 gi|159042403|ref|YP_001541655.1| - 4.4e-27 94.8 9.7 9.3e-27 93.8 6.7 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|159042403|ref|YP_001541655.1| - 0.063 12.9 13.9 0.1 12.2 9.6 1.3 1 0 0 1 1 1 0 Rifin/stevor family Fer2_3 PF13085.1 gi|159042404|ref|YP_001541656.1| - 0.54 10.0 3.2 0.82 9.5 2.2 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain IBR PF01485.16 gi|159042404|ref|YP_001541656.1| - 2.7 7.9 7.2 24 4.9 5.0 2.1 1 1 0 1 1 1 0 IBR domain EPSP_synthase PF00275.15 gi|159042405|ref|YP_001541657.1| - 3.7e-72 243.0 0.0 4.5e-72 242.7 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Usp PF00582.21 gi|159042406|ref|YP_001541658.1| - 4.1e-36 124.2 0.8 5.1e-36 123.9 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF3359 PF11839.3 gi|159042406|ref|YP_001541658.1| - 0.023 15.0 0.4 0.034 14.4 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3359) AP_endonuc_2 PF01261.19 gi|159042406|ref|YP_001541658.1| - 0.034 13.4 0.1 1 8.6 0.0 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DUF2520 PF10728.4 gi|159042406|ref|YP_001541658.1| - 0.037 13.4 0.3 0.05 13.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) RNA_binding PF01877.12 gi|159042407|ref|YP_001541659.1| - 2.8e-27 95.0 0.5 3.4e-27 94.8 0.3 1.1 1 0 0 1 1 1 1 RNA binding CagZ PF09053.5 gi|159042407|ref|YP_001541659.1| - 0.046 13.0 0.6 0.066 12.5 0.4 1.2 1 0 0 1 1 1 0 CagZ Radical_SAM PF04055.16 gi|159042408|ref|YP_001541660.1| - 1e-11 45.2 0.0 1.9e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily zinc_ribbon_5 PF13719.1 gi|159042409|ref|YP_001541661.1| - 3.1e-07 29.8 0.3 0.026 14.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|159042409|ref|YP_001541661.1| - 5.8e-07 29.0 0.7 0.026 14.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|159042409|ref|YP_001541661.1| - 1.9e-05 24.2 4.4 0.0058 16.2 0.6 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|159042409|ref|YP_001541661.1| - 1.9e-05 23.9 0.7 0.11 11.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|159042409|ref|YP_001541661.1| - 2.1e-05 23.5 1.9 0.065 12.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.1 gi|159042409|ref|YP_001541661.1| - 4.7e-05 23.3 0.5 0.12 12.3 0.1 2.1 2 0 0 2 2 2 2 CpXC protein zf-C2H2_4 PF13894.1 gi|159042409|ref|YP_001541661.1| - 0.00025 21.1 1.0 0.68 10.3 0.1 2.2 2 0 0 2 2 2 2 C2H2-type zinc finger Lar_restr_allev PF14354.1 gi|159042409|ref|YP_001541661.1| - 0.00027 21.1 0.1 0.00034 20.8 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.1 gi|159042409|ref|YP_001541661.1| - 0.00033 20.4 0.9 0.023 14.5 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG Zn-ribbon_8 PF09723.5 gi|159042409|ref|YP_001541661.1| - 0.0011 18.8 2.4 0.014 15.3 1.7 2.1 1 1 0 1 1 1 1 Zinc ribbon domain DUF329 PF03884.9 gi|159042409|ref|YP_001541661.1| - 0.0012 18.3 0.2 0.13 11.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF329) FYDLN_acid PF09538.5 gi|159042409|ref|YP_001541661.1| - 0.0016 18.9 0.5 0.62 10.6 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) zf-H2C2_2 PF13465.1 gi|159042409|ref|YP_001541661.1| - 0.0018 18.4 1.9 0.85 10.0 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zf-CHCC PF10276.4 gi|159042409|ref|YP_001541661.1| - 0.0018 18.0 0.6 0.22 11.3 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger domain zf-Di19 PF05605.7 gi|159042409|ref|YP_001541661.1| - 0.0019 18.2 0.7 1.4 9.1 0.1 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zf-BED PF02892.10 gi|159042409|ref|YP_001541661.1| - 0.0023 17.6 0.5 0.35 10.6 0.0 2.3 1 1 1 2 2 2 1 BED zinc finger Zn_Tnp_IS1595 PF12760.2 gi|159042409|ref|YP_001541661.1| - 0.0036 17.0 3.0 0.5 10.2 0.1 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|159042409|ref|YP_001541661.1| - 0.0038 17.4 4.1 0.61 10.5 0.2 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-ISL3 PF14690.1 gi|159042409|ref|YP_001541661.1| - 0.0043 17.0 0.4 1.9 8.5 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-AN1 PF01428.11 gi|159042409|ref|YP_001541661.1| - 0.0045 16.8 0.3 2.4 8.0 0.0 2.1 2 0 0 2 2 2 1 AN1-like Zinc finger TF_Zn_Ribbon PF08271.7 gi|159042409|ref|YP_001541661.1| - 0.0062 15.8 0.8 0.84 9.0 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|159042409|ref|YP_001541661.1| - 0.0074 16.2 0.3 2.3 8.2 0.0 2.2 2 0 0 2 2 2 1 zinc-finger HypA PF01155.14 gi|159042409|ref|YP_001541661.1| - 0.008 15.8 0.1 0.013 15.1 0.1 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TerY-C PF15616.1 gi|159042409|ref|YP_001541661.1| - 0.0094 15.8 0.9 0.025 14.4 0.6 1.7 1 1 0 1 1 1 1 TerY-C metal binding domain zf-C2HC_2 PF13913.1 gi|159042409|ref|YP_001541661.1| - 0.012 15.2 3.7 0.33 10.6 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type IBR PF01485.16 gi|159042409|ref|YP_001541661.1| - 0.013 15.3 0.3 0.023 14.5 0.2 1.4 1 1 0 1 1 1 0 IBR domain zf-RING_2 PF13639.1 gi|159042409|ref|YP_001541661.1| - 0.013 15.2 0.2 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Ring finger domain zf-TFIIB PF13453.1 gi|159042409|ref|YP_001541661.1| - 0.015 14.4 0.1 0.58 9.3 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|159042409|ref|YP_001541661.1| - 0.019 14.9 0.2 7.6 6.5 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Elf1 PF05129.8 gi|159042409|ref|YP_001541661.1| - 0.027 14.1 0.1 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C4_Topoisom PF01396.14 gi|159042409|ref|YP_001541661.1| - 0.028 13.9 0.7 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CSL PF05207.8 gi|159042409|ref|YP_001541661.1| - 0.028 13.9 0.7 0.4 10.2 0.5 2.1 1 1 1 2 2 2 0 CSL zinc finger DZR PF12773.2 gi|159042409|ref|YP_001541661.1| - 0.029 14.1 0.9 0.093 12.5 0.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|159042409|ref|YP_001541661.1| - 0.038 13.7 0.6 4.6 7.0 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|159042409|ref|YP_001541661.1| - 0.039 13.6 1.2 2.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal FYVE PF01363.16 gi|159042409|ref|YP_001541661.1| - 0.042 13.7 0.2 3 7.8 0.0 2.1 2 0 0 2 2 2 0 FYVE zinc finger Terminase_GpA PF05876.7 gi|159042409|ref|YP_001541661.1| - 0.043 12.1 0.5 0.061 11.6 0.3 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) Rad50_zn_hook PF04423.9 gi|159042409|ref|YP_001541661.1| - 0.045 13.2 0.5 4.8 6.7 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif YhfH PF14149.1 gi|159042409|ref|YP_001541661.1| - 0.051 13.3 0.3 9.2 6.1 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF983 PF06170.7 gi|159042409|ref|YP_001541661.1| - 0.052 13.6 0.3 6.3 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Ribosomal_S27e PF01667.12 gi|159042409|ref|YP_001541661.1| - 0.069 12.6 0.6 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 PyrI_C PF02748.10 gi|159042409|ref|YP_001541661.1| - 0.072 12.5 0.5 0.39 10.2 0.0 2.0 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2_6 PF13912.1 gi|159042409|ref|YP_001541661.1| - 0.074 12.9 0.9 4.1 7.4 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C3HC4_3 PF13920.1 gi|159042409|ref|YP_001541661.1| - 0.083 12.5 0.2 6.2 6.5 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Acetone_carb_G PF08882.6 gi|159042409|ref|YP_001541661.1| - 0.093 12.7 0.8 0.54 10.2 0.2 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-DNL PF05180.7 gi|159042409|ref|YP_001541661.1| - 0.097 12.4 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 DNL zinc finger TFIIS_C PF01096.13 gi|159042409|ref|YP_001541661.1| - 0.12 12.0 2.0 7.7 6.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3268 PF11672.3 gi|159042409|ref|YP_001541661.1| - 0.14 12.2 0.7 13 5.9 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) OrfB_Zn_ribbon PF07282.6 gi|159042409|ref|YP_001541661.1| - 0.21 11.2 1.4 0.98 9.1 0.9 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1272 PF06906.6 gi|159042409|ref|YP_001541661.1| - 0.28 11.0 1.3 17 5.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Zn_Tnp_IS1 PF03811.8 gi|159042409|ref|YP_001541661.1| - 0.3 10.6 1.5 4.1 6.9 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain DUF4379 PF14311.1 gi|159042409|ref|YP_001541661.1| - 0.3 10.9 2.3 4 7.3 0.1 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4379) PhnA_Zn_Ribbon PF08274.7 gi|159042409|ref|YP_001541661.1| - 0.38 10.5 4.3 5.5 6.8 3.0 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-tcix PF14952.1 gi|159042409|ref|YP_001541661.1| - 0.65 9.3 4.3 12 5.2 0.7 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Rubredoxin PF00301.15 gi|159042409|ref|YP_001541661.1| - 2.5 8.0 8.5 0.61 10.0 1.7 2.6 2 1 0 2 2 2 0 Rubredoxin zf-CCHC PF00098.18 gi|159042409|ref|YP_001541661.1| - 4.5 7.3 6.0 2.4 8.2 0.3 2.2 2 0 0 2 2 2 0 Zinc knuckle DUF1610 PF07754.6 gi|159042409|ref|YP_001541661.1| - 8.1 6.6 8.9 3.4 7.8 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNA_pol_Rpb5_C PF01191.14 gi|159042410|ref|YP_001541662.1| - 6.6e-26 89.7 0.0 9.1e-26 89.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain HSP20 PF00011.16 gi|159042411|ref|YP_001541663.1| - 4.2e-15 55.4 1.8 2.1e-13 49.9 1.3 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|159042411|ref|YP_001541663.1| - 7.1e-06 26.4 0.0 1.2e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|159042411|ref|YP_001541663.1| - 0.00023 20.8 0.1 0.00031 20.4 0.0 1.1 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|159042411|ref|YP_001541663.1| - 0.034 13.5 0.0 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 GHMP_kinases_N PF00288.21 gi|159042412|ref|YP_001541664.1| - 1.1e-10 41.3 2.9 3.1e-10 39.9 2.0 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|159042412|ref|YP_001541664.1| - 9.5e-05 22.5 1.2 0.0012 18.9 0.3 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal eRF1_1 PF03463.10 gi|159042413|ref|YP_001541665.1| - 1.1e-16 60.6 0.0 2e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|159042413|ref|YP_001541665.1| - 9e-14 51.6 0.2 7.5e-13 48.7 0.0 2.3 2 0 0 2 2 2 1 eRF1 domain 3 HAD PF12710.2 gi|159042413|ref|YP_001541665.1| - 0.0062 16.7 0.2 0.0099 16.0 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2107 PF09880.4 gi|159042413|ref|YP_001541665.1| - 0.057 13.3 0.4 0.12 12.2 0.3 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) RNA_pol_Rpb5_C PF01191.14 gi|159042414|ref|YP_001541666.1| - 0.057 13.0 0.0 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain TPP_enzyme_C PF02775.16 gi|159042415|ref|YP_001541667.1| - 8.3e-25 87.1 1.3 1.1e-24 86.7 0.4 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|159042416|ref|YP_001541668.1| - 4.7e-74 248.7 0.5 5.9e-74 248.4 0.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|159042416|ref|YP_001541668.1| - 0.00073 19.4 0.1 0.0019 18.1 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|159042417|ref|YP_001541669.1| - 4.6e-14 51.3 15.0 4.1e-08 32.4 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|159042417|ref|YP_001541669.1| - 1.3e-11 44.1 15.5 1.1e-09 37.9 5.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159042417|ref|YP_001541669.1| - 2.9e-10 40.3 32.0 1.8e-06 28.1 8.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159042417|ref|YP_001541669.1| - 1.8e-09 37.0 14.5 1.7e-05 24.4 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|159042417|ref|YP_001541669.1| - 1.9e-09 37.1 22.6 8e-07 28.7 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159042417|ref|YP_001541669.1| - 2e-08 33.6 12.4 7.8e-05 22.3 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|159042417|ref|YP_001541669.1| - 4.6e-08 33.6 8.9 0.00024 21.7 1.6 2.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|159042417|ref|YP_001541669.1| - 9e-07 29.0 8.6 1.8e-06 28.1 5.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|159042417|ref|YP_001541669.1| - 1e-05 25.4 8.1 1.9e-05 24.6 5.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159042417|ref|YP_001541669.1| - 2.4e-05 24.8 8.9 0.013 16.0 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|159042417|ref|YP_001541669.1| - 6.6e-05 22.9 10.0 0.041 14.2 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|159042417|ref|YP_001541669.1| - 0.00023 21.5 4.3 0.087 13.2 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|159042417|ref|YP_001541669.1| - 0.0022 18.2 10.5 0.035 14.4 7.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|159042417|ref|YP_001541669.1| - 0.0054 17.0 12.5 0.032 14.6 1.0 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain DUF678 PF05077.7 gi|159042417|ref|YP_001541669.1| - 0.23 11.4 3.6 3.7 7.6 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_3 PF12798.2 gi|159042417|ref|YP_001541669.1| - 8.1 7.2 17.8 0.34 11.5 4.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|159042418|ref|YP_001541670.1| - 7.8e-36 123.5 0.9 9.1e-36 123.3 0.7 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase RtcB PF01139.12 gi|159042419|ref|YP_001541671.1| - 1.1e-153 512.2 0.0 1.3e-153 511.9 0.0 1.1 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF3656 PF12392.3 gi|159042419|ref|YP_001541671.1| - 0.048 13.7 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Collagenase DUF126 PF01989.11 gi|159042420|ref|YP_001541672.1| - 4.3e-25 87.2 0.3 7e-25 86.5 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 ThiF PF00899.16 gi|159042422|ref|YP_001541674.1| - 9.2e-44 148.5 0.3 1.2e-43 148.1 0.2 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|159042422|ref|YP_001541674.1| - 3e-09 36.3 0.0 5.4e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|159042422|ref|YP_001541674.1| - 0.0085 16.1 3.3 0.23 11.5 2.3 2.1 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Methyltransf_12 PF08242.7 gi|159042422|ref|YP_001541674.1| - 0.058 13.8 0.1 0.16 12.4 0.1 1.8 2 1 0 2 2 2 0 Methyltransferase domain Cas6 PF09559.5 gi|159042422|ref|YP_001541674.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Cas6 Crispr 2-Hacid_dh_C PF02826.14 gi|159042422|ref|YP_001541674.1| - 0.22 10.6 1.7 5.6 6.0 0.1 2.2 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.20 gi|159042422|ref|YP_001541674.1| - 0.87 9.4 4.2 4.4 7.1 2.9 2.0 1 1 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.11 gi|159042422|ref|YP_001541674.1| - 2.3 7.6 5.1 11 5.4 3.5 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MS_channel PF00924.13 gi|159042423|ref|YP_001541675.1| - 3.1e-21 75.6 0.5 6e-21 74.7 0.3 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF4525 PF15027.1 gi|159042423|ref|YP_001541675.1| - 0.092 12.2 0.3 0.16 11.5 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) DUF2177 PF09945.4 gi|159042423|ref|YP_001541675.1| - 0.39 10.6 8.0 2.1 8.3 0.3 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2177) FAD_binding_2 PF00890.19 gi|159042424|ref|YP_001541676.1| - 3.9e-104 348.8 0.1 4.6e-104 348.5 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|159042424|ref|YP_001541676.1| - 2.2e-45 153.6 0.1 3.8e-45 152.8 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|159042424|ref|YP_001541676.1| - 1.6e-06 28.1 0.1 0.00019 21.3 0.1 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|159042424|ref|YP_001541676.1| - 4.6e-05 22.6 1.7 0.015 14.4 0.1 2.5 2 0 0 2 2 2 2 Thi4 family DAO PF01266.19 gi|159042424|ref|YP_001541676.1| - 0.02 13.7 0.2 0.037 12.9 0.1 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|159042424|ref|YP_001541676.1| - 0.021 13.9 0.2 1.4 7.8 0.2 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|159042424|ref|YP_001541676.1| - 0.36 9.6 2.1 0.61 8.8 0.6 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Prefoldin PF02996.12 gi|159042425|ref|YP_001541677.1| - 0.0067 16.0 0.2 2.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Prefoldin subunit BLOC1_2 PF10046.4 gi|159042425|ref|YP_001541677.1| - 0.0073 16.4 0.6 0.071 13.2 0.0 2.1 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_gp64 PF03273.8 gi|159042425|ref|YP_001541677.1| - 0.028 12.5 0.2 0.066 11.3 0.0 1.6 2 0 0 2 2 2 0 Baculovirus gp64 envelope glycoprotein family FliJ PF02050.11 gi|159042425|ref|YP_001541677.1| - 0.07 13.1 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Flagellar FliJ protein ParB PF08775.5 gi|159042425|ref|YP_001541677.1| - 0.1 12.9 0.3 0.43 10.9 0.0 1.9 2 0 0 2 2 2 0 ParB family TSC22 PF01166.13 gi|159042425|ref|YP_001541677.1| - 0.14 12.1 3.1 0.29 11.1 0.1 2.3 2 1 0 2 2 2 0 TSC-22/dip/bun family DUF1351 PF07083.6 gi|159042425|ref|YP_001541677.1| - 0.27 10.8 1.7 1.2 8.7 1.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1351) OMPdecase PF00215.19 gi|159042426|ref|YP_001541678.1| - 1.7e-22 79.9 2.7 3.4e-22 78.9 1.8 1.5 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NTP_transf_2 PF01909.18 gi|159042426|ref|YP_001541678.1| - 0.0055 17.0 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain QRPTase_C PF01729.14 gi|159042426|ref|YP_001541678.1| - 0.023 14.2 1.4 0.11 11.9 1.1 1.8 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.12 gi|159042426|ref|YP_001541678.1| - 0.062 12.4 0.3 0.1 11.7 0.2 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI CobA_CobO_BtuR PF02572.10 gi|159042427|ref|YP_001541679.1| - 5e-39 133.6 0.1 5.5e-38 130.2 0.0 1.9 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TniB PF05621.6 gi|159042427|ref|YP_001541679.1| - 0.011 14.5 0.1 0.013 14.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial TniB protein AAA_14 PF13173.1 gi|159042427|ref|YP_001541679.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|159042427|ref|YP_001541679.1| - 0.02 15.0 0.0 0.043 14.0 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|159042427|ref|YP_001541679.1| - 0.079 12.7 0.5 0.16 11.7 0.4 1.4 1 0 0 1 1 1 0 Part of AAA domain Ribosomal_L13 PF00572.13 gi|159042428|ref|YP_001541680.1| - 1.2e-27 96.5 0.1 1.6e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Big_1 PF02369.11 gi|159042429|ref|YP_001541681.1| - 0.025 14.4 0.1 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) HPIH PF13323.1 gi|159042429|ref|YP_001541681.1| - 9.9 5.8 6.5 2.1 8.0 0.5 2.3 2 0 0 2 2 2 0 N-terminal domain with HPIH motif DUF2341 PF10102.4 gi|159042431|ref|YP_001541683.1| - 0.00017 21.6 1.9 0.00041 20.4 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) DUF1628 PF07790.6 gi|159042432|ref|YP_001541684.1| - 0.0082 16.8 3.2 0.0082 16.8 2.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DEAD_assoc PF08494.6 gi|159042434|ref|YP_001541686.1| - 1.6e-35 122.4 0.1 3.3e-35 121.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|159042434|ref|YP_001541686.1| - 6.6e-32 110.3 0.0 3.6e-30 104.6 0.0 3.0 2 1 1 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|159042434|ref|YP_001541686.1| - 6.4e-14 51.5 0.2 5.3e-13 48.6 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|159042434|ref|YP_001541686.1| - 5.3e-06 25.4 0.0 9.7e-06 24.5 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|159042434|ref|YP_001541686.1| - 0.0025 17.6 0.0 0.0091 15.8 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2067 PF09840.4 gi|159042434|ref|YP_001541686.1| - 0.014 14.8 2.3 0.11 11.9 0.5 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) zf-ribbon_3 PF13248.1 gi|159042434|ref|YP_001541686.1| - 0.027 13.6 0.1 0.047 12.9 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|159042434|ref|YP_001541686.1| - 0.031 13.9 0.1 0.081 12.6 0.1 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_11 PF13086.1 gi|159042434|ref|YP_001541686.1| - 0.056 13.0 0.0 0.17 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.5 gi|159042434|ref|YP_001541686.1| - 0.12 12.2 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Trm112p PF03966.11 gi|159042435|ref|YP_001541687.1| - 3.5e-15 56.1 0.4 5.1e-15 55.5 0.3 1.3 1 0 0 1 1 1 1 Trm112p-like protein SMC_N PF02463.14 gi|159042437|ref|YP_001541689.1| - 1.5e-17 63.5 0.0 3.9e-17 62.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|159042437|ref|YP_001541689.1| - 6.7e-16 59.2 46.7 8.1e-11 42.6 19.8 4.7 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|159042437|ref|YP_001541689.1| - 1.3e-13 50.7 13.6 2.8e-08 33.2 2.3 2.6 3 0 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.1 gi|159042437|ref|YP_001541689.1| - 7.2e-09 36.0 13.4 2.6e-06 27.6 2.9 3.8 2 2 0 2 2 2 2 AAA domain IncA PF04156.9 gi|159042437|ref|YP_001541689.1| - 1.9e-08 34.1 55.3 0.026 14.1 3.2 5.2 2 1 3 5 5 5 5 IncA protein AAA_29 PF13555.1 gi|159042437|ref|YP_001541689.1| - 5.4e-05 22.6 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NPV_P10 PF05531.7 gi|159042437|ref|YP_001541689.1| - 8.9e-05 22.6 15.7 1.9 8.7 0.0 7.2 3 3 2 6 6 6 1 Nucleopolyhedrovirus P10 protein DUF948 PF06103.6 gi|159042437|ref|YP_001541689.1| - 0.00019 21.2 11.2 0.1 12.4 0.2 5.7 4 4 2 6 6 6 1 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|159042437|ref|YP_001541689.1| - 0.00019 20.7 11.4 0.49 9.5 0.3 4.6 3 1 2 5 5 5 4 Reovirus sigma C capsid protein BLOC1_2 PF10046.4 gi|159042437|ref|YP_001541689.1| - 0.00061 19.8 38.1 0.25 11.4 1.8 7.7 4 4 3 7 7 7 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.1 gi|159042437|ref|YP_001541689.1| - 0.00063 18.3 39.4 0.015 13.7 8.7 5.4 2 1 2 6 6 6 3 AAA domain Laminin_I PF06008.9 gi|159042437|ref|YP_001541689.1| - 0.00075 18.8 39.6 0.00076 18.8 2.3 4.5 2 1 2 4 4 4 2 Laminin Domain I Myosin_tail_1 PF01576.14 gi|159042437|ref|YP_001541689.1| - 0.002 15.9 10.0 0.002 15.9 6.9 4.0 3 1 0 3 3 3 1 Myosin tail LOH1CR12 PF10158.4 gi|159042437|ref|YP_001541689.1| - 0.0075 16.0 17.8 1.9 8.3 0.4 5.0 3 1 0 4 4 4 2 Tumour suppressor protein Laminin_II PF06009.7 gi|159042437|ref|YP_001541689.1| - 0.0075 16.0 35.2 0.24 11.1 0.7 6.1 6 0 0 6 6 6 3 Laminin Domain II CENP-F_leu_zip PF10473.4 gi|159042437|ref|YP_001541689.1| - 0.026 14.3 52.9 0.13 12.0 5.1 5.1 3 3 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|159042437|ref|YP_001541689.1| - 0.026 13.1 44.7 0.062 11.9 3.4 4.5 3 2 1 4 4 4 0 Spc7 kinetochore protein Snapin_Pallidin PF14712.1 gi|159042437|ref|YP_001541689.1| - 0.04 14.2 0.4 0.04 14.2 0.3 6.9 3 2 3 7 7 7 0 Snapin/Pallidin GAS PF13851.1 gi|159042437|ref|YP_001541689.1| - 0.05 12.7 45.0 0.024 13.8 2.7 4.7 4 1 0 4 4 4 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.10 gi|159042437|ref|YP_001541689.1| - 0.064 12.9 20.2 0.37 10.4 0.2 4.8 3 1 0 4 4 4 0 Sec34-like family Spectrin PF00435.16 gi|159042437|ref|YP_001541689.1| - 0.11 12.7 29.5 2.6 8.3 0.2 6.1 2 2 3 5 5 5 0 Spectrin repeat ABC_tran PF00005.22 gi|159042437|ref|YP_001541689.1| - 0.2 11.9 3.7 3.4 7.9 0.0 3.7 2 1 0 3 3 3 0 ABC transporter DUF342 PF03961.8 gi|159042437|ref|YP_001541689.1| - 0.26 9.6 43.4 0.42 8.9 3.1 4.6 2 2 3 5 5 5 0 Protein of unknown function (DUF342) DUF2203 PF09969.4 gi|159042437|ref|YP_001541689.1| - 0.42 10.8 25.7 0.065 13.4 0.6 5.2 4 1 0 4 4 4 0 Uncharacterized conserved protein (DUF2203) Occludin_ELL PF07303.8 gi|159042437|ref|YP_001541689.1| - 0.43 11.3 33.2 2.4 8.9 1.3 6.0 3 1 1 5 5 5 0 Occludin homology domain AAA_18 PF13238.1 gi|159042437|ref|YP_001541689.1| - 0.75 10.1 0.0 0.75 10.1 0.0 4.7 3 2 2 5 5 5 0 AAA domain WXG100 PF06013.7 gi|159042437|ref|YP_001541689.1| - 0.85 9.6 13.3 25 4.9 0.1 5.9 6 2 0 6 6 5 0 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.17 gi|159042437|ref|YP_001541689.1| - 1.6 8.8 45.2 1.7 8.6 3.0 6.3 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain FliD_N PF02465.13 gi|159042437|ref|YP_001541689.1| - 3.1 8.2 14.3 39 4.6 0.0 6.1 4 4 3 7 7 7 0 Flagellar hook-associated protein 2 N-terminus DOG1 PF14144.1 gi|159042437|ref|YP_001541689.1| - 3.4 7.7 11.2 23 5.1 0.2 5.2 4 1 1 5 5 5 0 Seed dormancy control Syntaxin-6_N PF09177.6 gi|159042437|ref|YP_001541689.1| - 4 7.9 28.7 2.2 8.7 0.5 6.3 3 2 3 6 6 6 0 Syntaxin 6, N-terminal DUF4559 PF15112.1 gi|159042437|ref|YP_001541689.1| - 4 6.5 25.5 0.02 14.0 2.9 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4559) Sec8_exocyst PF04048.9 gi|159042437|ref|YP_001541689.1| - 4.2 6.9 24.3 1.4 8.5 0.7 5.3 3 2 3 6 6 6 0 Sec8 exocyst complex component specific domain AAA_22 PF13401.1 gi|159042437|ref|YP_001541689.1| - 4.4 7.4 7.7 1.8 8.6 0.0 3.8 2 1 2 4 4 4 0 AAA domain M_domain PF12938.2 gi|159042437|ref|YP_001541689.1| - 7.8 6.2 7.2 8.7 6.0 0.1 3.6 3 1 1 4 4 3 0 M domain of GW182 MtrG PF04210.8 gi|159042437|ref|YP_001541689.1| - 8.1 6.2 16.4 0.26 11.0 0.2 5.4 5 1 1 6 6 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G Glyco_trans_4_2 PF13477.1 gi|159042438|ref|YP_001541690.1| - 0.05 13.4 0.0 0.86 9.4 0.0 2.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like tRNA-synt_2 PF00152.15 gi|159042440|ref|YP_001541692.1| - 3.5e-84 282.4 0.0 5.3e-84 281.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|159042440|ref|YP_001541692.1| - 9e-16 57.5 0.6 1.8e-15 56.5 0.4 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|159042440|ref|YP_001541692.1| - 0.0033 16.6 0.3 0.035 13.3 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|159042440|ref|YP_001541692.1| - 0.014 14.9 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) RRM_DME PF15628.1 gi|159042441|ref|YP_001541693.1| - 0.04 13.5 0.4 0.2 11.3 0.1 2.0 1 1 1 2 2 2 0 RRM in Demeter Col_cuticle_N PF01484.12 gi|159042441|ref|YP_001541693.1| - 0.21 11.3 0.1 0.21 11.3 0.1 2.7 3 0 0 3 3 3 0 Nematode cuticle collagen N-terminal domain SUR7 PF06687.7 gi|159042441|ref|YP_001541693.1| - 1.8 8.0 9.5 2.5 7.6 6.6 1.2 1 0 0 1 1 1 0 SUR7/PalI family HhH-GPD PF00730.20 gi|159042442|ref|YP_001541694.1| - 1e-20 74.0 0.0 1.3e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|159042442|ref|YP_001541694.1| - 1.9e-05 24.1 0.0 4.5e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|159042442|ref|YP_001541694.1| - 0.072 13.2 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|159042442|ref|YP_001541694.1| - 0.077 13.2 8.3 0.12 12.5 5.8 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Transposase_20 PF02371.11 gi|159042442|ref|YP_001541694.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Ribosomal_L38e PF01781.13 gi|159042443|ref|YP_001541695.1| - 0.00054 19.6 0.3 0.00062 19.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L38e protein family Pab87_oct PF13969.1 gi|159042443|ref|YP_001541695.1| - 0.037 14.1 0.0 0.039 14.0 0.0 1.1 1 0 0 1 1 1 0 Pab87 octamerisation domain Semialdhyde_dh PF01118.19 gi|159042443|ref|YP_001541695.1| - 0.039 14.2 0.0 0.044 14.0 0.0 1.1 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF4415 PF14384.1 gi|159042443|ref|YP_001541695.1| - 0.077 13.1 0.1 0.095 12.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4415) ABC_tran PF00005.22 gi|159042444|ref|YP_001541696.1| - 6.5e-33 113.9 0.0 9.8e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|159042444|ref|YP_001541696.1| - 2.3e-07 31.0 0.3 0.0022 18.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|159042444|ref|YP_001541696.1| - 1.7e-05 25.0 0.0 3.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|159042444|ref|YP_001541696.1| - 0.00051 20.1 0.2 0.22 11.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|159042444|ref|YP_001541696.1| - 0.0019 17.7 0.1 0.65 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|159042444|ref|YP_001541696.1| - 0.0027 17.7 0.0 0.0055 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|159042444|ref|YP_001541696.1| - 0.034 13.7 0.2 0.062 12.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|159042444|ref|YP_001541696.1| - 0.043 13.3 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|159042444|ref|YP_001541696.1| - 0.075 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|159042444|ref|YP_001541696.1| - 0.11 13.2 0.0 0.25 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|159042444|ref|YP_001541696.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF188 PF02639.9 gi|159042444|ref|YP_001541696.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 ABC_tran PF00005.22 gi|159042445|ref|YP_001541697.1| - 3.3e-26 92.2 0.0 4.4e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|159042445|ref|YP_001541697.1| - 5.8e-20 71.4 0.1 9.3e-20 70.7 0.0 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|159042445|ref|YP_001541697.1| - 1e-13 51.9 1.5 5.3e-12 46.2 1.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|159042445|ref|YP_001541697.1| - 8.9e-08 31.6 0.1 1.5e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|159042445|ref|YP_001541697.1| - 2.8e-05 23.5 0.0 5.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|159042445|ref|YP_001541697.1| - 0.00012 21.2 0.8 0.077 12.0 0.4 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|159042445|ref|YP_001541697.1| - 0.00018 21.6 0.2 0.0017 18.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|159042445|ref|YP_001541697.1| - 0.0018 18.6 0.0 0.0064 16.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|159042445|ref|YP_001541697.1| - 0.0018 18.6 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|159042445|ref|YP_001541697.1| - 0.004 16.8 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|159042445|ref|YP_001541697.1| - 0.0041 16.5 0.1 0.012 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|159042445|ref|YP_001541697.1| - 0.0064 15.9 0.2 0.068 12.6 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|159042445|ref|YP_001541697.1| - 0.0084 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|159042445|ref|YP_001541697.1| - 0.0089 16.8 0.0 0.014 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|159042445|ref|YP_001541697.1| - 0.025 14.2 0.0 0.058 13.0 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA PF00004.24 gi|159042445|ref|YP_001541697.1| - 0.026 14.7 0.1 0.099 12.8 0.0 2.0 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|159042445|ref|YP_001541697.1| - 0.028 13.3 0.2 0.059 12.2 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|159042445|ref|YP_001541697.1| - 0.029 14.1 0.0 0.056 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PRK PF00485.13 gi|159042445|ref|YP_001541697.1| - 0.048 13.2 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.12 gi|159042445|ref|YP_001541697.1| - 0.06 13.1 0.1 0.16 11.7 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|159042445|ref|YP_001541697.1| - 0.094 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|159042445|ref|YP_001541697.1| - 0.095 12.1 0.4 2.2 7.7 0.3 2.1 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) RNA_helicase PF00910.17 gi|159042445|ref|YP_001541697.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.18 gi|159042445|ref|YP_001541697.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase PhoH PF02562.11 gi|159042445|ref|YP_001541697.1| - 0.12 11.5 0.1 0.26 10.4 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF258 PF03193.11 gi|159042445|ref|YP_001541697.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|159042445|ref|YP_001541697.1| - 0.14 10.7 0.2 3.5 6.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Hepar_II_III PF07940.8 gi|159042446|ref|YP_001541698.1| - 1.9e-27 95.7 0.4 4.8e-27 94.4 0.1 1.8 2 0 0 2 2 2 1 Heparinase II/III-like protein Ribosomal_L15e PF00827.12 gi|159042447|ref|YP_001541699.1| - 5.6e-63 211.9 7.2 6.5e-63 211.7 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L15 PGM_PMM_I PF02878.11 gi|159042448|ref|YP_001541700.1| - 7.5e-37 125.8 0.0 1.1e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|159042448|ref|YP_001541700.1| - 5.8e-24 84.4 0.1 1.3e-23 83.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|159042448|ref|YP_001541700.1| - 5.5e-16 58.6 0.0 1e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|159042448|ref|YP_001541700.1| - 7.4e-07 29.0 0.0 1.7e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF99 PF01949.11 gi|159042449|ref|YP_001541701.1| - 1.2e-50 171.1 0.0 1.4e-50 170.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Nuc_deoxyrib_tr PF05014.10 gi|159042450|ref|YP_001541702.1| - 3.5e-05 23.6 0.0 7.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase SIS_2 PF13580.1 gi|159042451|ref|YP_001541703.1| - 1.6e-41 141.2 0.0 2.1e-41 140.8 0.0 1.2 1 0 0 1 1 1 1 SIS domain SIS PF01380.17 gi|159042451|ref|YP_001541703.1| - 0.0015 18.1 0.1 0.0062 16.1 0.0 1.9 2 0 0 2 2 2 1 SIS domain DUF2529 PF10740.4 gi|159042451|ref|YP_001541703.1| - 0.017 14.5 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2529) DMRL_synthase PF00885.14 gi|159042451|ref|YP_001541703.1| - 0.037 13.6 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase DUF1343 PF07075.6 gi|159042452|ref|YP_001541704.1| - 9.7e-121 403.0 0.0 1.2e-120 402.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1343) tRNA-synt_2c PF01411.14 gi|159042453|ref|YP_001541705.1| - 1.7e-118 396.3 0.0 2.5e-118 395.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|159042453|ref|YP_001541705.1| - 2e-13 49.9 1.2 4.3e-13 48.9 0.8 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|159042453|ref|YP_001541705.1| - 0.1 11.6 0.1 0.2 10.7 0.1 1.3 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit Antitoxin-MazE PF04014.13 gi|159042454|ref|YP_001541706.1| - 5.5e-11 41.9 0.1 3.5e-07 29.7 0.0 2.2 2 0 0 2 2 2 2 Antidote-toxin recognition MazE Radical_SAM PF04055.16 gi|159042455|ref|YP_001541707.1| - 1.6e-16 60.9 0.0 2.9e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|159042455|ref|YP_001541707.1| - 2.1e-07 31.1 0.0 3.9e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|159042455|ref|YP_001541707.1| - 4.5e-05 23.4 0.0 8.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|159042455|ref|YP_001541707.1| - 0.0041 17.4 0.0 0.0041 17.4 0.0 1.6 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain HEM4 PF02602.10 gi|159042456|ref|YP_001541708.1| - 5.2e-31 107.6 0.0 6.3e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD ATP-synt_C PF00137.16 gi|159042457|ref|YP_001541709.1| - 7.5e-14 51.3 14.3 7.5e-14 51.3 9.9 1.6 2 0 0 2 2 2 1 ATP synthase subunit C CxxCxxCC PF03692.10 gi|159042459|ref|YP_001541711.1| - 1.6e-08 34.8 0.3 2.6e-08 34.1 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ribosomal_S30 PF04758.9 gi|159042461|ref|YP_001541713.1| - 1.3e-10 40.8 0.5 1.7e-10 40.4 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 zf-C4H2 PF10146.4 gi|159042462|ref|YP_001541714.1| - 7.3e-05 22.9 8.8 0.00013 22.0 6.1 1.5 1 0 0 1 1 1 1 Zinc finger-containing protein IncA PF04156.9 gi|159042462|ref|YP_001541714.1| - 0.0017 17.9 12.7 0.0017 17.9 8.8 1.6 2 0 0 2 2 1 1 IncA protein APG6 PF04111.7 gi|159042462|ref|YP_001541714.1| - 0.0028 16.7 9.5 0.0028 16.7 6.6 2.3 2 1 1 3 3 2 2 Autophagy protein Apg6 Casc1 PF12366.3 gi|159042462|ref|YP_001541714.1| - 0.012 15.1 1.0 0.018 14.5 0.7 1.3 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 CCDC155 PF14662.1 gi|159042462|ref|YP_001541714.1| - 0.012 15.1 12.8 0.023 14.3 8.9 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 AAA_13 PF13166.1 gi|159042462|ref|YP_001541714.1| - 0.027 12.9 11.8 0.043 12.2 8.2 1.3 1 0 0 1 1 1 0 AAA domain Cytochrom_C_2 PF01322.15 gi|159042462|ref|YP_001541714.1| - 0.036 14.6 0.3 0.074 13.5 0.2 1.6 1 0 0 1 1 1 0 Cytochrome C' Iso_dh PF00180.15 gi|159042462|ref|YP_001541714.1| - 0.043 12.7 0.3 0.096 11.6 0.2 1.6 1 1 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase Reo_sigmaC PF04582.7 gi|159042462|ref|YP_001541714.1| - 0.062 12.4 0.1 0.099 11.8 0.1 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF2353 PF09789.4 gi|159042462|ref|YP_001541714.1| - 0.072 12.3 10.9 0.4 9.9 7.8 1.8 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) GAS PF13851.1 gi|159042462|ref|YP_001541714.1| - 0.096 11.8 19.8 0.054 12.6 9.5 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Prominin PF05478.6 gi|159042462|ref|YP_001541714.1| - 0.11 9.9 3.3 0.14 9.6 2.3 1.2 1 0 0 1 1 1 0 Prominin Allexi_40kDa PF05549.6 gi|159042462|ref|YP_001541714.1| - 0.12 11.6 3.1 0.25 10.6 2.1 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein V_ATPase_I PF01496.14 gi|159042462|ref|YP_001541714.1| - 0.18 9.5 8.2 0.24 9.2 5.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family EzrA PF06160.7 gi|159042462|ref|YP_001541714.1| - 0.22 9.6 16.3 0.083 11.0 9.1 1.9 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA GlnE PF03710.10 gi|159042462|ref|YP_001541714.1| - 0.22 10.7 7.7 0.52 9.5 0.1 2.6 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase DUF2265 PF10023.4 gi|159042462|ref|YP_001541714.1| - 0.24 10.5 5.7 0.34 9.9 4.0 1.2 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) UPF0242 PF06785.6 gi|159042462|ref|YP_001541714.1| - 0.25 10.0 12.6 0.35 9.5 8.4 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) TBPIP PF07106.8 gi|159042462|ref|YP_001541714.1| - 0.29 10.6 17.1 0.97 8.9 8.0 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF632 PF04782.7 gi|159042462|ref|YP_001541714.1| - 0.42 9.6 15.6 0.2 10.7 6.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF632) EMP24_GP25L PF01105.19 gi|159042462|ref|YP_001541714.1| - 0.44 10.2 10.1 1.9 8.1 1.6 2.4 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF972 PF06156.8 gi|159042462|ref|YP_001541714.1| - 0.48 10.7 13.5 3.2 8.1 5.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF948 PF06103.6 gi|159042462|ref|YP_001541714.1| - 0.59 10.0 3.5 8 6.4 0.2 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) ADIP PF11559.3 gi|159042462|ref|YP_001541714.1| - 0.6 9.9 13.1 1.1 9.1 8.6 1.7 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding OmpH PF03938.9 gi|159042462|ref|YP_001541714.1| - 0.83 9.5 12.2 0.3 11.0 6.3 1.8 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF2205 PF10224.4 gi|159042462|ref|YP_001541714.1| - 1 8.9 10.5 0.91 9.1 3.6 2.9 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) DASH_Dad3 PF08656.5 gi|159042462|ref|YP_001541714.1| - 1 9.0 11.5 0.15 11.7 1.0 2.9 2 2 1 3 3 3 0 DASH complex subunit Dad3 AAA_11 PF13086.1 gi|159042462|ref|YP_001541714.1| - 1.1 8.8 3.7 1.7 8.1 2.6 1.4 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|159042462|ref|YP_001541714.1| - 1.1 7.6 15.0 5.5 5.2 10.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Pepsin-I3 PF06394.8 gi|159042462|ref|YP_001541714.1| - 1.3 8.7 5.3 0.94 9.1 0.6 2.4 1 1 1 2 2 2 0 Pepsin inhibitor-3-like repeated domain eIF3_N PF09440.5 gi|159042462|ref|YP_001541714.1| - 1.5 9.0 7.6 0.92 9.6 1.6 2.3 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain FlgN PF05130.7 gi|159042462|ref|YP_001541714.1| - 2 8.6 17.5 0.23 11.6 7.6 2.4 3 0 0 3 3 2 0 FlgN protein TMF_DNA_bd PF12329.3 gi|159042462|ref|YP_001541714.1| - 2.1 8.2 24.5 0.12 12.1 10.6 3.3 2 1 2 4 4 4 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|159042462|ref|YP_001541714.1| - 2.2 8.3 10.7 1.2 9.1 5.4 2.0 2 1 0 2 2 1 0 Fibrinogen alpha/beta chain family Tweety PF04906.8 gi|159042462|ref|YP_001541714.1| - 2.3 6.5 5.2 6.8 4.9 3.6 1.7 1 1 0 1 1 1 0 Tweety Phage_lysis PF03245.8 gi|159042462|ref|YP_001541714.1| - 3.8 7.5 13.3 9.4 6.2 2.7 3.3 2 1 1 3 3 3 0 Bacteriophage Rz lysis protein Phage_GP20 PF06810.6 gi|159042462|ref|YP_001541714.1| - 4.1 6.8 19.4 1.9 7.9 2.3 2.9 2 1 1 3 3 3 0 Phage minor structural protein GP20 BLOC1_2 PF10046.4 gi|159042462|ref|YP_001541714.1| - 4.5 7.4 13.1 0.43 10.7 3.6 2.9 2 1 2 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_23 PF13476.1 gi|159042462|ref|YP_001541714.1| - 5.3 7.3 15.3 9.1 6.5 0.2 2.2 1 1 1 2 2 2 0 AAA domain Cauli_AT PF03233.8 gi|159042462|ref|YP_001541714.1| - 6.1 6.5 9.8 7.9 6.1 5.6 2.1 1 1 1 2 2 2 0 Aphid transmission protein DUF4446 PF14584.1 gi|159042462|ref|YP_001541714.1| - 7.2 6.4 7.3 53 3.6 5.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2335 PF10097.4 gi|159042462|ref|YP_001541714.1| - 7.5 6.2 10.6 10 5.8 1.4 2.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2335) EB_dh PF09459.5 gi|159042465|ref|YP_001541717.1| - 4.7e-72 242.5 0.4 5.4e-72 242.3 0.3 1.0 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Rieske PF00355.21 gi|159042466|ref|YP_001541718.1| - 8.1e-14 50.9 0.1 1.4e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|159042466|ref|YP_001541718.1| - 0.9 9.7 4.6 0.25 11.4 0.7 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|159042467|ref|YP_001541719.1| - 8.7e-44 149.2 6.5 8.7e-44 149.2 4.5 3.1 3 1 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|159042467|ref|YP_001541719.1| - 4.8e-06 26.0 17.0 4.8e-06 26.0 11.8 2.9 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB TrbC PF04956.8 gi|159042467|ref|YP_001541719.1| - 0.11 12.4 10.6 1.3 9.0 1.2 3.6 3 0 0 3 3 3 0 TrbC/VIRB2 family ECH PF00378.15 gi|159042468|ref|YP_001541720.1| - 3e-19 69.1 0.0 3.4e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF4382 PF14321.1 gi|159042469|ref|YP_001541721.1| - 7e-27 94.1 0.2 9e-27 93.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) DUF165 PF02592.10 gi|159042470|ref|YP_001541722.1| - 4.3e-28 98.3 5.8 4.3e-28 98.3 4.0 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 PEPcase_2 PF14010.1 gi|159042471|ref|YP_001541723.1| - 7.7e-195 647.8 0.0 8.7e-195 647.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase HMGL-like PF00682.14 gi|159042472|ref|YP_001541724.1| - 2e-26 93.1 0.0 3e-26 92.5 0.0 1.3 1 0 0 1 1 1 1 HMGL-like dsDNA_bind PF01984.15 gi|159042472|ref|YP_001541724.1| - 0.15 12.0 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 Double-stranded DNA-binding domain DUF4167 PF13763.1 gi|159042472|ref|YP_001541724.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) Acyl-CoA_dh_1 PF00441.19 gi|159042473|ref|YP_001541725.1| - 8.8e-37 126.5 1.1 1.6e-36 125.6 0.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|159042473|ref|YP_001541725.1| - 4.4e-22 77.3 0.2 8.2e-22 76.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|159042473|ref|YP_001541725.1| - 4.5e-22 78.7 0.1 1.2e-21 77.3 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|159042473|ref|YP_001541725.1| - 8.7e-16 58.3 0.2 1.3e-15 57.7 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF1628 PF07790.6 gi|159042474|ref|YP_001541726.1| - 6.5e-07 30.0 0.8 1.3e-06 29.0 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4369 PF14289.1 gi|159042474|ref|YP_001541726.1| - 0.09 12.8 0.0 0.16 12.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4369) Vpu PF00558.14 gi|159042474|ref|YP_001541726.1| - 0.43 10.1 1.4 0.67 9.5 1.0 1.2 1 0 0 1 1 1 0 Vpu protein Kelch_6 PF13964.1 gi|159042474|ref|YP_001541726.1| - 1 9.6 4.2 0.85 9.9 0.3 2.6 2 1 1 3 3 3 0 Kelch motif NTPase_1 PF03266.10 gi|159042475|ref|YP_001541727.1| - 0.064 12.9 0.2 0.099 12.3 0.2 1.2 1 0 0 1 1 1 0 NTPase Mrr_cat PF04471.7 gi|159042476|ref|YP_001541728.1| - 9.4e-09 35.0 0.1 1.6e-08 34.3 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF91 PF01939.11 gi|159042476|ref|YP_001541728.1| - 0.00012 21.3 0.3 0.00017 20.8 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 UPF0102 PF02021.12 gi|159042476|ref|YP_001541728.1| - 0.00068 19.5 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HSDR_N_2 PF13588.1 gi|159042476|ref|YP_001541728.1| - 0.048 13.4 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) MCE PF02470.15 gi|159042476|ref|YP_001541728.1| - 0.09 12.7 1.6 0.28 11.2 1.1 2.0 1 1 0 1 1 1 0 mce related protein DUF1853 PF08907.6 gi|159042476|ref|YP_001541728.1| - 0.17 11.0 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1853) Antitoxin-MazE PF04014.13 gi|159042477|ref|YP_001541729.1| - 0.082 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE CDP-OH_P_transf PF01066.16 gi|159042479|ref|YP_001541731.1| - 7.2e-12 45.4 10.1 3.2e-11 43.4 7.0 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase PadR PF03551.9 gi|159042480|ref|YP_001541732.1| - 2.4e-11 43.2 0.4 3.2e-11 42.8 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|159042480|ref|YP_001541732.1| - 4.8e-06 26.8 0.0 7.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|159042480|ref|YP_001541732.1| - 0.0079 15.8 0.3 0.028 14.1 0.2 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PP1c_bdg PF10488.4 gi|159042480|ref|YP_001541732.1| - 0.048 12.8 0.0 0.048 12.8 0.0 1.1 1 0 0 1 1 1 0 Phosphatase-1 catalytic subunit binding region DUF505 PF04458.7 gi|159042480|ref|YP_001541732.1| - 0.058 11.5 0.3 0.062 11.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) FUR PF01475.14 gi|159042480|ref|YP_001541732.1| - 0.087 12.7 0.1 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Ribosomal_S19e PF01090.14 gi|159042481|ref|YP_001541733.1| - 1e-51 174.0 0.0 1.2e-51 173.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|159042481|ref|YP_001541733.1| - 0.00023 20.7 0.0 0.0086 15.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus HTH_45 PF14947.1 gi|159042481|ref|YP_001541733.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_CodY PF08222.6 gi|159042481|ref|YP_001541733.1| - 0.013 14.8 0.1 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_12 PF08461.5 gi|159042481|ref|YP_001541733.1| - 0.027 14.1 0.1 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PBP PF01161.15 gi|159042482|ref|YP_001541734.1| - 4.3e-41 140.1 0.0 4.8e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Ribosomal_L1 PF00687.16 gi|159042483|ref|YP_001541735.1| - 2.4e-50 170.9 0.0 2.7e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family UPF0126 PF03458.8 gi|159042484|ref|YP_001541736.1| - 1.4e-46 156.0 19.4 5.9e-25 86.7 3.7 2.3 2 0 0 2 2 2 2 UPF0126 domain EamA PF00892.15 gi|159042484|ref|YP_001541736.1| - 0.7 9.9 13.3 0.13 12.3 0.5 2.7 2 1 0 2 2 2 0 EamA-like transporter family Ribosomal_L22 PF00237.14 gi|159042485|ref|YP_001541737.1| - 9.5e-28 96.2 0.0 1.3e-27 95.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e MRP_L53 PF10780.4 gi|159042485|ref|YP_001541737.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 39S ribosomal protein L53/MRP-L53 Ribosomal_S7 PF00177.16 gi|159042486|ref|YP_001541738.1| - 3e-44 150.1 0.0 3.8e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Metallophos_2 PF12850.2 gi|159042487|ref|YP_001541739.1| - 5.8e-10 39.2 0.0 4.3e-09 36.3 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|159042487|ref|YP_001541739.1| - 7.4e-10 38.5 0.8 8e-05 22.1 0.0 2.5 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|159042487|ref|YP_001541739.1| - 7.6e-07 28.5 0.6 0.015 14.4 0.0 3.1 3 0 0 3 3 3 3 Metallophosphoesterase, calcineurin superfamily DUF1374 PF07118.6 gi|159042487|ref|YP_001541739.1| - 0.081 13.0 1.5 0.15 12.1 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1374) Arch_ATPase PF01637.13 gi|159042488|ref|YP_001541740.1| - 1.2e-37 129.8 0.8 2.1e-37 129.0 0.5 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|159042488|ref|YP_001541740.1| - 8.2e-09 35.4 0.1 0.001 18.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|159042488|ref|YP_001541740.1| - 3.3e-06 27.2 0.0 9.4e-06 25.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159042488|ref|YP_001541740.1| - 1.7e-05 24.9 0.3 4.8e-05 23.4 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|159042488|ref|YP_001541740.1| - 0.0036 17.4 0.0 0.011 15.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Baculo_PEP_C PF04513.7 gi|159042488|ref|YP_001541740.1| - 0.028 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF815 PF05673.8 gi|159042488|ref|YP_001541740.1| - 0.099 11.5 0.0 0.43 9.4 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF815) SoxE PF06525.6 gi|159042490|ref|YP_001541742.1| - 2.2e-06 27.1 33.1 7.9e-05 22.0 23.0 2.7 1 1 0 1 1 1 1 Sulfocyanin (SoxE) Copper-bind PF00127.15 gi|159042490|ref|YP_001541742.1| - 0.00055 20.1 0.9 0.0078 16.4 0.0 2.9 2 1 1 3 3 3 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.9 gi|159042490|ref|YP_001541742.1| - 0.0028 17.1 1.5 0.036 13.5 0.0 2.8 2 1 0 2 2 2 1 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|159042490|ref|YP_001541742.1| - 0.0063 16.2 0.2 0.19 11.4 0.0 2.5 2 0 0 2 2 2 1 Multicopper oxidase GHBP PF12772.2 gi|159042490|ref|YP_001541742.1| - 0.04 13.3 4.3 0.054 12.9 3.0 1.1 1 0 0 1 1 1 0 Growth hormone receptor binding DUF1049 PF06305.6 gi|159042490|ref|YP_001541742.1| - 0.16 11.4 0.3 0.33 10.4 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) SP_C-Propep PF08999.5 gi|159042490|ref|YP_001541742.1| - 0.32 10.5 2.7 0.63 9.5 1.8 1.4 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide DUF515 PF04415.7 gi|159042490|ref|YP_001541742.1| - 0.71 8.0 4.3 1 7.4 3.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Mucin PF01456.12 gi|159042490|ref|YP_001541742.1| - 0.75 9.5 27.9 1.2 8.8 19.3 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Shisa PF13908.1 gi|159042490|ref|YP_001541742.1| - 5 7.2 10.6 0.39 10.8 3.9 1.7 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator COX2 PF00116.15 gi|159042491|ref|YP_001541743.1| - 3.7e-08 33.2 3.3 1.5e-07 31.2 1.2 2.4 2 1 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain MscS_TM PF12794.2 gi|159042491|ref|YP_001541743.1| - 0.0037 15.9 0.1 0.0055 15.3 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 YhfT PF10797.4 gi|159042491|ref|YP_001541743.1| - 0.0088 14.9 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DctM PF06808.7 gi|159042491|ref|YP_001541743.1| - 0.019 13.5 0.8 0.021 13.3 0.6 1.1 1 0 0 1 1 1 0 DctM-like transporters DUF2899 PF11449.3 gi|159042491|ref|YP_001541743.1| - 0.024 13.8 0.6 0.043 13.0 0.3 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2899) HAMP PF00672.20 gi|159042491|ref|YP_001541743.1| - 0.41 10.8 0.1 0.41 10.8 0.1 1.9 2 0 0 2 2 2 0 HAMP domain MerT PF02411.10 gi|159042491|ref|YP_001541743.1| - 0.42 10.4 5.4 0.075 12.8 0.5 2.1 3 0 0 3 3 3 0 MerT mercuric transport protein COX1 PF00115.15 gi|159042492|ref|YP_001541744.1| - 7.9e-62 209.3 64.6 1.9e-47 161.8 28.4 2.3 2 1 0 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I LZ_Tnp_IS481 PF13011.1 gi|159042492|ref|YP_001541744.1| - 0.013 15.8 0.0 0.095 13.0 0.0 2.3 3 0 0 3 3 3 0 leucine-zipper of insertion element IS481 Rieske PF00355.21 gi|159042493|ref|YP_001541745.1| - 3.7e-14 52.0 0.3 8.5e-14 50.9 0.2 1.6 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|159042493|ref|YP_001541745.1| - 0.053 13.5 0.7 0.053 13.5 0.5 2.6 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|159042494|ref|YP_001541746.1| - 1.8e-47 161.2 6.3 1.8e-47 161.2 4.4 2.5 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|159042494|ref|YP_001541746.1| - 5e-09 35.7 11.2 5e-09 35.7 7.8 2.8 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.1 gi|159042494|ref|YP_001541746.1| - 0.00014 21.8 12.6 0.008 16.2 2.3 3.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4405) Fer4_9 PF13187.1 gi|159042495|ref|YP_001541747.1| - 4.1e-07 30.1 6.2 7.6e-07 29.3 4.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|159042495|ref|YP_001541747.1| - 4.3e-07 29.6 6.2 7e-07 28.9 4.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|159042495|ref|YP_001541747.1| - 1e-05 25.1 8.8 0.0043 16.8 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|159042495|ref|YP_001541747.1| - 1e-05 25.4 0.7 0.0019 18.2 3.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|159042495|ref|YP_001541747.1| - 1.6e-05 25.1 8.2 4.7e-05 23.6 5.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|159042495|ref|YP_001541747.1| - 0.0002 21.1 9.4 0.052 13.4 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|159042495|ref|YP_001541747.1| - 0.0003 20.6 1.6 0.00055 19.7 1.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|159042495|ref|YP_001541747.1| - 0.0077 15.7 13.4 0.073 12.6 0.5 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|159042495|ref|YP_001541747.1| - 0.022 15.1 8.6 0.2 12.1 0.1 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|159042495|ref|YP_001541747.1| - 0.042 14.4 13.2 0.2 12.2 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|159042495|ref|YP_001541747.1| - 0.11 12.8 10.0 0.69 10.3 5.4 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|159042495|ref|YP_001541747.1| - 0.44 11.1 0.1 0.44 11.1 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|159042495|ref|YP_001541747.1| - 0.59 10.6 10.3 1.4 9.4 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|159042495|ref|YP_001541747.1| - 0.94 9.1 6.7 0.19 11.3 1.0 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|159042495|ref|YP_001541747.1| - 1.4 8.7 10.7 0.06 13.2 3.4 1.7 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|159042495|ref|YP_001541747.1| - 1.7 9.4 10.1 4.5 8.0 0.2 2.3 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Thiolase_N PF00108.18 gi|159042496|ref|YP_001541748.1| - 9.5e-79 264.0 0.1 2e-78 263.0 0.0 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|159042496|ref|YP_001541748.1| - 1.3e-40 137.6 0.1 2.8e-40 136.5 0.0 1.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|159042496|ref|YP_001541748.1| - 1.5e-05 24.5 0.3 3.5e-05 23.4 0.2 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain tRNA-synt_1b PF00579.20 gi|159042497|ref|YP_001541749.1| - 5.4e-27 94.6 0.0 3.7e-26 91.9 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) CxxCxxCC PF03692.10 gi|159042498|ref|YP_001541750.1| - 5.4e-18 65.2 1.5 7.6e-18 64.7 1.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|159042498|ref|YP_001541750.1| - 2.5 7.5 6.7 0.34 10.3 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3109) Ribosomal_S26e PF01283.14 gi|159042499|ref|YP_001541751.1| - 4.2e-33 113.9 2.5 5.4e-33 113.6 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.12 gi|159042499|ref|YP_001541751.1| - 0.001 18.7 0.4 0.16 11.7 0.0 2.3 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger DUF164 PF02591.10 gi|159042499|ref|YP_001541751.1| - 0.24 11.2 1.8 0.37 10.6 0.0 2.2 2 1 0 2 2 2 0 Putative zinc ribbon domain zf-C2H2_jaz PF12171.3 gi|159042499|ref|YP_001541751.1| - 0.61 10.3 2.4 24 5.2 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding Reo_sigmaC PF04582.7 gi|159042500|ref|YP_001541752.1| - 0.0019 17.4 6.9 0.018 14.2 2.4 2.3 1 1 2 3 3 3 3 Reovirus sigma C capsid protein HALZ PF02183.13 gi|159042500|ref|YP_001541752.1| - 0.0025 17.4 4.7 1.3 8.8 0.1 3.0 2 1 0 2 2 2 2 Homeobox associated leucine zipper KIP1 PF07765.7 gi|159042500|ref|YP_001541752.1| - 0.027 14.2 0.2 0.051 13.4 0.1 1.5 1 0 0 1 1 1 0 KIP1-like protein Jnk-SapK_ap_N PF09744.4 gi|159042500|ref|YP_001541752.1| - 0.25 11.3 2.2 0.48 10.3 0.4 2.1 1 1 0 2 2 2 0 JNK_SAPK-associated protein-1 Scaffolding_pro PF11418.3 gi|159042500|ref|YP_001541752.1| - 0.71 10.2 4.1 13 6.1 0.1 3.3 2 2 0 3 3 3 0 Phi29 scaffolding protein FR47 PF08445.5 gi|159042502|ref|YP_001541754.1| - 8.2e-14 51.1 0.1 2.1e-13 49.7 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_1 PF00583.19 gi|159042502|ref|YP_001541754.1| - 1.4e-11 44.2 0.0 2.6e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|159042502|ref|YP_001541754.1| - 4e-06 26.9 0.0 6.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|159042502|ref|YP_001541754.1| - 0.00017 21.7 0.1 0.00087 19.4 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|159042502|ref|YP_001541754.1| - 0.001 18.9 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.5 gi|159042502|ref|YP_001541754.1| - 0.012 15.5 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_3 PF13302.1 gi|159042502|ref|YP_001541754.1| - 0.018 15.1 0.0 0.034 14.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|159042502|ref|YP_001541754.1| - 0.028 14.2 0.0 0.15 11.9 0.0 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Hist_deacetyl PF00850.14 gi|159042503|ref|YP_001541755.1| - 1.5e-71 241.2 0.0 1.8e-71 241.0 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Robl_LC7 PF03259.12 gi|159042504|ref|YP_001541756.1| - 0.029 13.9 0.1 0.045 13.3 0.0 1.5 1 1 0 1 1 1 0 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|159042504|ref|YP_001541756.1| - 0.066 12.8 1.2 0.16 11.5 0.8 1.7 1 1 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting Mg296 PF09644.5 gi|159042504|ref|YP_001541756.1| - 0.068 13.0 0.4 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 Mg296 protein IF-2B PF01008.12 gi|159042505|ref|YP_001541757.1| - 3.5e-12 45.8 0.3 8.4e-10 38.1 0.2 2.5 1 1 0 1 1 1 1 Initiation factor 2 subunit family UDPG_MGDP_dh_N PF03721.9 gi|159042506|ref|YP_001541758.1| - 3.4e-31 108.0 0.1 1.8e-30 105.7 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|159042506|ref|YP_001541758.1| - 7.1e-22 77.5 0.0 3.1e-21 75.4 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|159042506|ref|YP_001541758.1| - 9.1e-21 73.8 0.0 2.4e-20 72.5 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_Gly3P_dh_N PF01210.18 gi|159042506|ref|YP_001541758.1| - 1.9e-06 27.6 0.0 0.0016 18.2 0.0 2.7 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|159042506|ref|YP_001541758.1| - 5.3e-06 26.2 0.1 1.5e-05 24.7 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|159042506|ref|YP_001541758.1| - 1.2e-05 24.4 0.1 0.016 14.3 0.0 2.9 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|159042506|ref|YP_001541758.1| - 0.00018 21.8 0.2 0.58 10.6 0.0 3.5 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|159042506|ref|YP_001541758.1| - 0.0002 21.2 0.0 0.012 15.5 0.0 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|159042506|ref|YP_001541758.1| - 0.00021 20.9 0.1 0.00054 19.5 0.0 1.8 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|159042506|ref|YP_001541758.1| - 0.011 16.3 0.0 0.044 14.3 0.0 2.0 1 0 0 1 1 1 0 Methyltransferase domain NAD_binding_7 PF13241.1 gi|159042506|ref|YP_001541758.1| - 0.011 15.9 0.1 2.9 8.1 0.1 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|159042506|ref|YP_001541758.1| - 0.016 15.1 1.3 0.3 11.0 0.0 3.3 4 0 0 4 4 4 0 TrkA-N domain ApbA PF02558.11 gi|159042506|ref|YP_001541758.1| - 0.02 14.3 0.2 0.045 13.1 0.0 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA THUMP PF02926.12 gi|159042507|ref|YP_001541759.1| - 6.4e-15 55.2 1.4 7.6e-15 55.0 0.9 1.1 1 0 0 1 1 1 1 THUMP domain Ribosomal_L21e PF01157.13 gi|159042508|ref|YP_001541760.1| - 6.4e-13 48.3 0.0 7.7e-13 48.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L21e RHH_1 PF01402.16 gi|159042510|ref|YP_001541762.1| - 2.7e-11 42.8 0.3 3.8e-11 42.3 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|159042510|ref|YP_001541762.1| - 0.16 11.7 0.5 0.34 10.7 0.3 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) HTH_27 PF13463.1 gi|159042511|ref|YP_001541763.1| - 0.00078 19.7 0.0 0.0015 18.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain COX5A PF02284.11 gi|159042511|ref|YP_001541763.1| - 0.0027 17.6 0.0 0.0065 16.4 0.0 1.5 2 0 0 2 2 2 1 Cytochrome c oxidase subunit Va TFIIE_alpha PF02002.12 gi|159042511|ref|YP_001541763.1| - 0.018 14.5 0.2 0.031 13.7 0.2 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit FlgI PF02119.11 gi|159042511|ref|YP_001541763.1| - 0.02 13.5 0.0 0.022 13.4 0.0 1.1 1 0 0 1 1 1 0 Flagellar P-ring protein FeoC PF09012.5 gi|159042511|ref|YP_001541763.1| - 0.075 12.7 0.3 0.52 10.0 0.0 2.3 2 1 0 3 3 3 0 FeoC like transcriptional regulator Flavi_capsid PF01003.14 gi|159042511|ref|YP_001541763.1| - 0.078 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Flavivirus capsid protein C Thioredoxin_2 PF13098.1 gi|159042512|ref|YP_001541764.1| - 1.1e-06 28.7 0.0 2.6e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|159042512|ref|YP_001541764.1| - 5.3e-06 26.5 0.0 1.1e-05 25.5 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|159042512|ref|YP_001541764.1| - 0.0011 18.6 0.1 0.033 13.7 0.0 2.1 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Decorin_bind PF02352.10 gi|159042512|ref|YP_001541764.1| - 0.1 12.5 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Decorin binding protein YqgF PF14639.1 gi|159042513|ref|YP_001541765.1| - 0.007 15.9 0.2 0.013 15.0 0.1 1.4 1 1 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 DUF3194 PF11419.3 gi|159042513|ref|YP_001541765.1| - 0.04 14.1 1.6 1.3 9.2 1.1 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3194) RHH_1 PF01402.16 gi|159042513|ref|YP_001541765.1| - 0.066 13.1 0.1 0.066 13.1 0.1 2.5 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family ATP-cone PF03477.11 gi|159042513|ref|YP_001541765.1| - 0.14 12.6 2.0 4.4 7.8 0.7 2.8 2 1 0 2 2 2 0 ATP cone domain tRNA-synt_1 PF00133.17 gi|159042514|ref|YP_001541766.1| - 4.2e-62 210.0 0.0 5e-61 206.4 0.0 2.5 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|159042514|ref|YP_001541766.1| - 1.9e-23 82.7 0.2 7.6e-11 41.2 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|159042514|ref|YP_001541766.1| - 1.3e-21 76.9 0.4 3.6e-21 75.5 0.3 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|159042514|ref|YP_001541766.1| - 7.5e-13 48.2 0.1 7.7e-08 31.8 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|159042514|ref|YP_001541766.1| - 3.3e-08 33.0 0.0 9.5e-07 28.2 0.0 2.3 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|159042514|ref|YP_001541766.1| - 0.0005 18.8 1.1 0.0014 17.3 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|159042514|ref|YP_001541766.1| - 0.0011 17.9 0.0 0.013 14.3 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (R) CxxCxxCC PF03692.10 gi|159042515|ref|YP_001541767.1| - 6.2e-08 33.0 0.7 9.3e-08 32.4 0.5 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain RibD_C PF01872.12 gi|159042516|ref|YP_001541768.1| - 2.5e-34 118.6 0.0 3e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF359 PF04019.7 gi|159042517|ref|YP_001541769.1| - 1.4e-25 88.9 0.0 1.9e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Aminotran_1_2 PF00155.16 gi|159042518|ref|YP_001541770.1| - 2.4e-42 145.2 0.0 2.8e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|159042518|ref|YP_001541770.1| - 5.9e-15 54.7 0.0 8.4e-15 54.2 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.12 gi|159042518|ref|YP_001541770.1| - 5.6e-05 22.3 0.0 0.00015 20.9 0.0 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|159042518|ref|YP_001541770.1| - 0.056 12.5 0.0 0.085 11.9 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase PhoU_div PF01865.11 gi|159042519|ref|YP_001541771.1| - 3.3e-16 59.0 7.2 4.3e-16 58.7 5.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PHO4 PF01384.15 gi|159042520|ref|YP_001541772.1| - 3.1e-24 85.2 30.5 3.3e-23 81.8 21.1 2.3 1 1 0 1 1 1 1 Phosphate transporter family bact-PGI_C PF10432.4 gi|159042521|ref|YP_001541773.1| - 2.6e-42 144.1 0.1 1.3e-41 141.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|159042521|ref|YP_001541773.1| - 8.5e-06 25.4 0.1 0.0019 17.8 0.0 3.0 3 0 0 3 3 3 1 SIS domain UPF0227 PF05728.7 gi|159042521|ref|YP_001541773.1| - 0.025 14.2 0.7 0.43 10.2 0.1 2.4 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0227) Abhydrolase_5 PF12695.2 gi|159042521|ref|YP_001541773.1| - 0.049 13.3 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family SIS_2 PF13580.1 gi|159042521|ref|YP_001541773.1| - 0.099 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 SIS domain MFS_1 PF07690.11 gi|159042522|ref|YP_001541774.1| - 2.2e-49 168.0 80.8 1.4e-44 152.3 31.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|159042522|ref|YP_001541774.1| - 8.8e-10 37.7 10.7 8.8e-10 37.7 7.4 3.0 3 2 0 3 3 3 2 Sugar (and other) transporter OATP PF03137.15 gi|159042522|ref|YP_001541774.1| - 3e-05 22.2 4.1 3e-05 22.2 2.9 2.6 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.1 gi|159042522|ref|YP_001541774.1| - 0.069 11.5 39.8 0.012 14.0 5.9 3.6 1 1 2 3 3 3 0 MFS/sugar transport protein MAF_flag10 PF01973.13 gi|159042523|ref|YP_001541775.1| - 1.1e-11 44.5 0.0 1.6e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Glycos_transf_2 PF00535.21 gi|159042524|ref|YP_001541776.1| - 5.8e-23 81.4 0.0 8.3e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|159042524|ref|YP_001541776.1| - 3.6e-07 30.2 0.0 5e-07 29.7 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|159042524|ref|YP_001541776.1| - 2.2e-06 27.8 0.0 3.1e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|159042524|ref|YP_001541776.1| - 0.00017 21.7 0.0 0.0003 21.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|159042524|ref|YP_001541776.1| - 0.00027 20.3 0.0 0.00046 19.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase DUF1158 PF06643.6 gi|159042524|ref|YP_001541776.1| - 0.95 9.8 5.5 3.5 7.9 3.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1158) Fe-ADH_2 PF13685.1 gi|159042525|ref|YP_001541777.1| - 1.4e-56 191.5 1.0 1.7e-56 191.2 0.7 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|159042525|ref|YP_001541777.1| - 2.2e-24 85.8 0.7 5.4e-24 84.5 0.5 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase UBA PF00627.26 gi|159042525|ref|YP_001541777.1| - 0.2 11.5 0.9 6.2 6.7 0.0 2.9 4 0 0 4 4 4 0 UBA/TS-N domain tRNA-synt_2b PF00587.20 gi|159042526|ref|YP_001541778.1| - 7.8e-24 84.1 0.4 1.6e-23 83.1 0.3 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|159042526|ref|YP_001541778.1| - 9e-24 83.2 0.0 1.7e-23 82.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|159042526|ref|YP_001541778.1| - 3.9e-13 49.1 0.0 3.5e-12 46.0 0.0 2.2 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal PmbA_TldD PF01523.11 gi|159042527|ref|YP_001541779.1| - 7.2e-62 209.3 0.3 9.3e-62 208.9 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ham1p_like PF01725.11 gi|159042528|ref|YP_001541780.1| - 6.7e-49 165.8 0.0 8.3e-49 165.5 0.0 1.1 1 0 0 1 1 1 1 Ham1 family MFS_1 PF07690.11 gi|159042529|ref|YP_001541781.1| - 0.00081 18.2 0.2 0.00084 18.1 0.1 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily IncA PF04156.9 gi|159042529|ref|YP_001541781.1| - 0.0015 18.1 0.9 0.0026 17.3 0.6 1.4 1 1 0 1 1 1 1 IncA protein T2SM PF04612.7 gi|159042529|ref|YP_001541781.1| - 0.0077 16.0 4.5 0.52 10.0 0.0 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein M PIG-P PF08510.7 gi|159042529|ref|YP_001541781.1| - 0.011 15.3 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 0 PIG-P DUF1206 PF06724.6 gi|159042529|ref|YP_001541781.1| - 0.011 15.4 2.7 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF4131 PF13567.1 gi|159042529|ref|YP_001541781.1| - 0.036 13.4 0.0 0.04 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2614 PF11023.3 gi|159042529|ref|YP_001541781.1| - 0.049 13.4 0.1 0.057 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF2254 PF10011.4 gi|159042529|ref|YP_001541781.1| - 0.11 10.9 0.0 0.15 10.4 0.0 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF1469 PF07332.6 gi|159042529|ref|YP_001541781.1| - 0.45 10.2 13.4 0.73 9.5 9.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) OAD_gamma PF04277.8 gi|159042529|ref|YP_001541781.1| - 0.87 10.0 0.0 0.87 10.0 0.0 2.0 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain SdpI PF13630.1 gi|159042529|ref|YP_001541781.1| - 4.3 7.1 9.8 6.1 6.6 6.8 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2642 PF10842.3 gi|159042530|ref|YP_001541782.1| - 0.093 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) Acylphosphatase PF00708.13 gi|159042531|ref|YP_001541783.1| - 7.1e-29 99.7 0.0 7.6e-29 99.6 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|159042531|ref|YP_001541783.1| - 0.028 14.1 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Na_Ca_ex PF01699.19 gi|159042532|ref|YP_001541784.1| - 1.8e-16 60.0 33.7 1.2e-09 37.8 8.4 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein EamA PF00892.15 gi|159042534|ref|YP_001541786.1| - 2.7e-24 85.5 34.9 4.4e-14 52.6 10.6 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|159042534|ref|YP_001541786.1| - 3e-06 27.4 33.0 1.7e-05 24.9 5.5 3.5 1 1 3 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|159042534|ref|YP_001541786.1| - 7.4 6.2 24.0 0.49 10.0 3.5 3.2 1 1 2 3 3 3 0 Triose-phosphate Transporter family DUF655 PF04919.7 gi|159042535|ref|YP_001541787.1| - 8.1e-56 188.5 4.6 9.6e-56 188.3 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|159042535|ref|YP_001541787.1| - 1.4e-06 28.2 0.3 6.5e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|159042535|ref|YP_001541787.1| - 0.0016 18.3 0.3 0.021 14.7 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|159042535|ref|YP_001541787.1| - 0.055 13.1 0.1 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif Hexapep PF00132.19 gi|159042535|ref|YP_001541787.1| - 0.064 12.7 0.1 0.14 11.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) RNA_pol_Rpb4 PF03874.11 gi|159042536|ref|YP_001541788.1| - 5.9e-17 61.7 0.7 8.1e-17 61.3 0.5 1.2 1 1 0 1 1 1 1 RNA polymerase Rpb4 NIR_SIR_ferr PF03460.12 gi|159042536|ref|YP_001541788.1| - 0.025 14.1 0.9 4.4 6.9 0.0 3.5 2 1 1 3 3 3 0 Nitrite/Sulfite reductase ferredoxin-like half domain Zip PF02535.17 gi|159042537|ref|YP_001541789.1| - 0.0006 18.9 10.4 0.0006 18.9 7.2 3.1 1 1 1 2 2 2 1 ZIP Zinc transporter Ammonium_transp PF00909.16 gi|159042537|ref|YP_001541789.1| - 0.0082 14.6 0.4 0.0082 14.6 0.3 1.8 2 0 0 2 2 2 1 Ammonium Transporter Family RebB PF11747.3 gi|159042537|ref|YP_001541789.1| - 0.1 12.5 0.1 0.27 11.1 0.1 1.7 1 0 0 1 1 1 0 Killing trait Fer2_BFD PF04324.10 gi|159042538|ref|YP_001541790.1| - 8.9e-12 44.8 0.1 2.1e-11 43.6 0.1 1.7 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain NAD_binding_8 PF13450.1 gi|159042538|ref|YP_001541790.1| - 1.5e-09 37.6 0.4 6e-09 35.8 0.3 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|159042538|ref|YP_001541790.1| - 7.7e-08 31.5 0.4 1.2e-07 30.9 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|159042538|ref|YP_001541790.1| - 1.1e-07 31.0 1.4 2.3e-07 30.0 0.9 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|159042538|ref|YP_001541790.1| - 5.1e-07 29.7 5.2 3.3e-06 27.1 3.6 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|159042538|ref|YP_001541790.1| - 1.8e-06 28.2 1.1 4.4e-06 27.0 0.7 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|159042538|ref|YP_001541790.1| - 2.4e-06 26.9 0.4 3.5e-06 26.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|159042538|ref|YP_001541790.1| - 2.7e-06 26.1 0.4 4.4e-06 25.4 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|159042538|ref|YP_001541790.1| - 5.9e-06 25.5 1.6 9.5e-06 24.8 1.1 1.3 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.19 gi|159042538|ref|YP_001541790.1| - 6.9e-06 25.3 0.2 1.2e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Thi4 PF01946.12 gi|159042538|ref|YP_001541790.1| - 1.5e-05 24.2 0.7 2.7e-05 23.3 0.5 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|159042538|ref|YP_001541790.1| - 0.00031 19.7 0.1 0.0005 19.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|159042538|ref|YP_001541790.1| - 0.0012 17.8 0.4 0.002 17.0 0.3 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|159042538|ref|YP_001541790.1| - 0.002 18.2 0.6 0.023 14.7 0.2 2.6 2 2 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|159042538|ref|YP_001541790.1| - 0.11 11.8 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|159042538|ref|YP_001541790.1| - 0.27 9.8 0.6 0.39 9.2 0.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DAO PF01266.19 gi|159042539|ref|YP_001541791.1| - 2.1e-70 237.4 0.0 2.3e-70 237.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|159042539|ref|YP_001541791.1| - 6.9e-08 31.9 0.1 1e-07 31.4 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|159042539|ref|YP_001541791.1| - 6.9e-08 32.5 0.5 3.5e-05 23.7 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|159042539|ref|YP_001541791.1| - 7.2e-08 32.3 0.7 1.5e-07 31.3 0.5 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|159042539|ref|YP_001541791.1| - 1.5e-07 30.7 0.8 1.5e-07 30.7 0.5 1.7 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|159042539|ref|YP_001541791.1| - 1.7e-07 30.4 3.7 5.5e-07 28.7 2.6 1.7 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|159042539|ref|YP_001541791.1| - 4.6e-06 25.7 3.9 0.0002 20.3 0.5 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|159042539|ref|YP_001541791.1| - 5.1e-06 26.7 0.2 1.4e-05 25.2 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|159042539|ref|YP_001541791.1| - 6.6e-05 22.1 2.6 0.00015 20.9 1.9 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|159042539|ref|YP_001541791.1| - 0.001 19.4 4.6 0.001 19.4 3.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|159042539|ref|YP_001541791.1| - 0.0048 15.4 5.0 0.015 13.7 2.3 2.0 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|159042539|ref|YP_001541791.1| - 0.0054 16.4 3.1 0.018 14.7 2.1 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|159042539|ref|YP_001541791.1| - 0.008 16.4 0.2 0.015 15.5 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|159042539|ref|YP_001541791.1| - 0.0092 14.9 1.9 0.024 13.5 1.4 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.11 gi|159042539|ref|YP_001541791.1| - 0.028 13.8 0.5 0.044 13.2 0.3 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|159042539|ref|YP_001541791.1| - 0.044 13.5 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 ThiF family NAD_binding_9 PF13454.1 gi|159042539|ref|YP_001541791.1| - 0.052 13.3 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|159042539|ref|YP_001541791.1| - 0.24 11.4 0.9 0.51 10.4 0.6 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|159042539|ref|YP_001541791.1| - 0.29 9.7 0.7 0.4 9.2 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.9 gi|159042539|ref|YP_001541791.1| - 0.32 10.3 6.9 0.03 13.7 1.5 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Peptidase_M17_N PF02789.12 gi|159042540|ref|YP_001541792.1| - 0.051 13.3 0.1 0.16 11.7 0.1 1.8 1 1 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Glyco_hydro_12 PF01670.11 gi|159042542|ref|YP_001541794.1| - 6.1e-06 26.0 1.1 1.1e-05 25.2 0.8 1.5 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 Beta-Casp PF10996.3 gi|159042543|ref|YP_001541795.1| - 1.1e-19 70.6 0.0 2.1e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|159042543|ref|YP_001541795.1| - 1.2e-19 70.7 0.1 1.9e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|159042543|ref|YP_001541795.1| - 5.9e-12 45.5 0.0 1.5e-11 44.2 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|159042543|ref|YP_001541795.1| - 4.1e-11 42.5 0.0 7.7e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|159042543|ref|YP_001541795.1| - 0.014 15.1 0.0 0.042 13.5 0.0 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|159042543|ref|YP_001541795.1| - 0.02 14.9 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase TP_methylase PF00590.15 gi|159042544|ref|YP_001541796.1| - 1.1e-29 103.6 0.1 1.3e-29 103.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF4364 PF14277.1 gi|159042545|ref|YP_001541797.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FPL PF09758.4 gi|159042545|ref|YP_001541797.1| - 0.13 11.9 0.2 0.34 10.6 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised conserved protein AAA_5 PF07728.9 gi|159042546|ref|YP_001541798.1| - 5.9e-13 48.7 0.0 4.1e-12 46.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|159042546|ref|YP_001541798.1| - 3.9e-07 30.3 0.1 1.1e-05 25.6 0.0 3.3 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|159042546|ref|YP_001541798.1| - 4e-07 30.1 0.0 4.2e-05 23.6 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|159042546|ref|YP_001541798.1| - 0.00019 21.5 0.0 0.0015 18.7 0.0 2.3 1 1 0 1 1 1 1 RNA helicase AAA_22 PF13401.1 gi|159042546|ref|YP_001541798.1| - 0.0002 21.5 0.1 0.0097 16.0 0.0 3.6 2 2 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|159042546|ref|YP_001541798.1| - 0.00028 20.0 0.1 0.00047 19.2 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|159042546|ref|YP_001541798.1| - 0.00038 20.7 2.8 0.0017 18.6 0.0 3.0 2 2 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|159042546|ref|YP_001541798.1| - 0.0007 20.4 3.9 0.0017 19.1 0.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|159042546|ref|YP_001541798.1| - 0.00082 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|159042546|ref|YP_001541798.1| - 0.0026 17.4 0.0 0.0058 16.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain ABC_tran PF00005.22 gi|159042546|ref|YP_001541798.1| - 0.0027 18.0 0.1 0.0077 16.5 0.0 1.8 1 0 0 1 1 1 1 ABC transporter AAA_10 PF12846.2 gi|159042546|ref|YP_001541798.1| - 0.0029 17.1 0.2 0.009 15.4 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.12 gi|159042546|ref|YP_001541798.1| - 0.003 17.0 0.0 0.016 14.6 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|159042546|ref|YP_001541798.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|159042546|ref|YP_001541798.1| - 0.017 14.5 0.0 0.04 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|159042546|ref|YP_001541798.1| - 0.02 13.9 0.2 0.072 12.1 0.1 1.8 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.16 gi|159042546|ref|YP_001541798.1| - 0.022 13.9 0.1 0.035 13.2 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|159042546|ref|YP_001541798.1| - 0.027 14.1 0.1 0.091 12.4 0.0 1.9 2 0 0 2 2 1 0 NACHT domain AAA_24 PF13479.1 gi|159042546|ref|YP_001541798.1| - 0.031 13.8 0.0 0.076 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|159042546|ref|YP_001541798.1| - 0.037 13.7 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_3 PF07726.6 gi|159042546|ref|YP_001541798.1| - 0.056 13.0 0.0 0.24 10.9 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|159042546|ref|YP_001541798.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|159042546|ref|YP_001541798.1| - 0.063 13.1 0.0 0.35 10.7 0.0 2.3 1 1 0 1 1 1 0 AAA domain Pab87_oct PF13969.1 gi|159042546|ref|YP_001541798.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Pab87 octamerisation domain NTPase_1 PF03266.10 gi|159042546|ref|YP_001541798.1| - 0.13 11.9 0.0 0.33 10.6 0.0 1.7 1 0 0 1 1 1 0 NTPase SRP54 PF00448.17 gi|159042546|ref|YP_001541798.1| - 0.15 11.4 0.1 0.28 10.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KaiC PF06745.8 gi|159042547|ref|YP_001541799.1| - 1.8e-44 151.5 0.0 3.3e-43 147.4 0.0 2.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|159042547|ref|YP_001541799.1| - 8.4e-11 41.6 0.0 4.5e-10 39.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|159042547|ref|YP_001541799.1| - 2e-05 23.1 0.0 0.0061 14.9 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein Rad51 PF08423.6 gi|159042547|ref|YP_001541799.1| - 0.00016 20.7 0.0 0.00041 19.3 0.0 1.7 2 0 0 2 2 2 1 Rad51 DUF2075 PF09848.4 gi|159042547|ref|YP_001541799.1| - 0.00033 19.7 0.0 0.00043 19.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|159042547|ref|YP_001541799.1| - 0.00046 19.6 0.0 0.0012 18.2 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|159042547|ref|YP_001541799.1| - 0.00063 19.8 0.0 0.0015 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|159042547|ref|YP_001541799.1| - 0.0013 18.8 0.0 0.0024 17.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|159042547|ref|YP_001541799.1| - 0.0014 18.5 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|159042547|ref|YP_001541799.1| - 0.0017 17.8 0.0 0.0063 15.9 0.0 1.6 1 1 1 2 2 2 1 AAA-like domain DAP3 PF10236.4 gi|159042547|ref|YP_001541799.1| - 0.0031 16.5 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA_5 PF07728.9 gi|159042547|ref|YP_001541799.1| - 0.01 15.5 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|159042547|ref|YP_001541799.1| - 0.017 14.8 0.0 0.049 13.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DnaB_C PF03796.10 gi|159042547|ref|YP_001541799.1| - 0.041 12.7 0.0 0.075 11.9 0.0 1.5 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain ABC_tran PF00005.22 gi|159042547|ref|YP_001541799.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_31 PF13614.1 gi|159042547|ref|YP_001541799.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|159042547|ref|YP_001541799.1| - 0.13 11.9 0.0 0.39 10.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Epimerase PF01370.16 gi|159042548|ref|YP_001541800.1| - 2e-15 56.9 0.0 2.4e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|159042548|ref|YP_001541800.1| - 3.3e-12 45.8 0.0 4.3e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein Saccharop_dh PF03435.13 gi|159042548|ref|YP_001541800.1| - 3.6e-07 29.5 0.1 6.1e-07 28.7 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3Beta_HSD PF01073.14 gi|159042548|ref|YP_001541800.1| - 2.1e-06 26.6 0.0 6.7e-06 25.0 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|159042548|ref|YP_001541800.1| - 0.00057 18.8 0.0 0.00076 18.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|159042548|ref|YP_001541800.1| - 0.013 15.5 0.0 0.19 11.7 0.0 2.2 2 1 0 2 2 2 0 NADH(P)-binding Shikimate_DH PF01488.15 gi|159042548|ref|YP_001541800.1| - 0.015 15.3 0.1 0.051 13.6 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.22 gi|159042548|ref|YP_001541800.1| - 0.12 12.8 0.2 0.22 11.9 0.2 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF2893 PF11459.3 gi|159042548|ref|YP_001541800.1| - 0.13 12.1 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknwon function (DUF2893) adh_short PF00106.20 gi|159042549|ref|YP_001541801.1| - 1.5e-19 70.5 0.0 1.8e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|159042549|ref|YP_001541801.1| - 2e-14 53.9 0.0 2.8e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|159042549|ref|YP_001541801.1| - 0.0013 18.4 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|159042549|ref|YP_001541801.1| - 0.025 14.0 0.1 0.039 13.3 0.1 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Laminin_II PF06009.7 gi|159042550|ref|YP_001541802.1| - 1.8e-07 30.9 1.0 0.00094 18.9 0.1 2.3 1 1 2 3 3 3 2 Laminin Domain II WXG100 PF06013.7 gi|159042550|ref|YP_001541802.1| - 7.2e-07 29.1 2.4 0.0006 19.7 0.0 3.4 2 1 1 3 3 3 1 Proteins of 100 residues with WXG RmuC PF02646.11 gi|159042550|ref|YP_001541802.1| - 7.4e-07 28.3 3.4 0.00069 18.5 0.3 2.8 1 1 2 3 3 3 3 RmuC family V-SNARE_C PF12352.3 gi|159042550|ref|YP_001541802.1| - 1.5e-06 28.1 2.8 0.48 10.5 0.0 5.0 2 1 3 5 5 5 1 Snare region anchored in the vesicle membrane C-terminus Fib_alpha PF08702.5 gi|159042550|ref|YP_001541802.1| - 1.6e-06 28.2 2.0 0.031 14.4 0.8 3.2 1 1 0 2 2 2 2 Fibrinogen alpha/beta chain family Tropomyosin PF00261.15 gi|159042550|ref|YP_001541802.1| - 2.8e-06 26.6 3.5 2.8e-06 26.6 2.4 1.8 2 0 0 2 2 2 1 Tropomyosin EzrA PF06160.7 gi|159042550|ref|YP_001541802.1| - 3.2e-06 25.6 6.3 0.0016 16.6 0.8 1.8 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin_1 PF12718.2 gi|159042550|ref|YP_001541802.1| - 4.6e-06 26.5 1.5 4.6e-06 26.5 1.1 2.0 2 1 1 3 3 2 1 Tropomyosin like IFT57 PF10498.4 gi|159042550|ref|YP_001541802.1| - 1.2e-05 24.2 3.6 0.00086 18.1 2.8 2.1 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 Phage_GPO PF05929.6 gi|159042550|ref|YP_001541802.1| - 3.8e-05 23.0 5.5 0.016 14.4 1.9 2.4 1 1 2 3 3 3 3 Phage capsid scaffolding protein (GPO) serine peptidase Occludin_ELL PF07303.8 gi|159042550|ref|YP_001541802.1| - 5.9e-05 23.7 13.8 0.052 14.2 6.3 3.7 1 1 1 2 2 2 1 Occludin homology domain BLOC1_2 PF10046.4 gi|159042550|ref|YP_001541802.1| - 7.4e-05 22.8 3.0 0.0042 17.1 1.0 2.9 2 1 0 2 2 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|159042550|ref|YP_001541802.1| - 0.00013 21.7 3.0 0.0026 17.5 2.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Laminin_I PF06008.9 gi|159042550|ref|YP_001541802.1| - 0.00017 20.9 2.9 0.0014 17.9 1.1 2.2 1 1 1 2 2 2 1 Laminin Domain I V_ATPase_I PF01496.14 gi|159042550|ref|YP_001541802.1| - 0.00018 19.5 9.6 0.0011 16.9 6.7 1.8 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family Nup54 PF13874.1 gi|159042550|ref|YP_001541802.1| - 0.00033 20.3 5.1 0.00097 18.8 3.1 1.9 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 IncA PF04156.9 gi|159042550|ref|YP_001541802.1| - 0.00037 20.1 2.7 0.00037 20.1 1.9 2.4 1 1 1 2 2 2 1 IncA protein Baculo_PEP_C PF04513.7 gi|159042550|ref|YP_001541802.1| - 0.00056 19.7 0.0 0.3 10.9 0.1 2.4 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Lipoprotein_7 PF01540.11 gi|159042550|ref|YP_001541802.1| - 0.00065 18.8 3.1 0.0012 18.0 2.2 1.4 1 0 0 1 1 1 1 Adhesin lipoprotein DUF342 PF03961.8 gi|159042550|ref|YP_001541802.1| - 0.00067 18.1 5.4 0.0015 17.0 2.2 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF342) MetJ PF01340.15 gi|159042550|ref|YP_001541802.1| - 0.0008 19.1 0.4 0.37 10.5 0.0 2.6 2 0 0 2 2 2 1 Met Apo-repressor, MetJ APG17 PF04108.7 gi|159042550|ref|YP_001541802.1| - 0.00093 18.0 5.1 0.0098 14.7 0.2 2.7 2 1 1 3 3 3 2 Autophagy protein Apg17 FH2 PF02181.18 gi|159042550|ref|YP_001541802.1| - 0.0019 17.1 5.7 0.0047 15.8 3.9 1.6 1 1 0 1 1 1 1 Formin Homology 2 Domain NPV_P10 PF05531.7 gi|159042550|ref|YP_001541802.1| - 0.0021 18.2 0.3 1 9.6 0.2 3.1 1 1 1 3 3 3 1 Nucleopolyhedrovirus P10 protein Herpes_U30 PF04523.8 gi|159042550|ref|YP_001541802.1| - 0.0022 15.5 0.3 0.0026 15.2 0.2 1.3 1 0 0 1 1 1 1 Herpes virus tegument protein U30 TBPIP PF07106.8 gi|159042550|ref|YP_001541802.1| - 0.0022 17.5 2.5 0.029 13.8 0.8 2.4 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Seryl_tRNA_N PF02403.17 gi|159042550|ref|YP_001541802.1| - 0.0023 17.9 6.7 0.17 11.9 0.5 3.6 2 1 1 3 3 3 1 Seryl-tRNA synthetase N-terminal domain DUF3584 PF12128.3 gi|159042550|ref|YP_001541802.1| - 0.0023 15.3 6.7 0.0043 14.4 4.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) YkyA PF10368.4 gi|159042550|ref|YP_001541802.1| - 0.0025 17.1 7.2 0.017 14.5 0.6 3.0 1 1 1 2 2 2 1 Putative cell-wall binding lipoprotein Spc7 PF08317.6 gi|159042550|ref|YP_001541802.1| - 0.0039 15.8 2.0 0.01 14.5 1.4 1.6 1 1 0 1 1 1 1 Spc7 kinetochore protein Clusterin PF01093.12 gi|159042550|ref|YP_001541802.1| - 0.0043 15.9 12.1 0.0093 14.8 8.2 1.6 1 1 0 1 1 1 1 Clusterin DUF869 PF05911.6 gi|159042550|ref|YP_001541802.1| - 0.0044 15.3 0.4 0.0061 14.8 0.3 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) AAA_13 PF13166.1 gi|159042550|ref|YP_001541802.1| - 0.0055 15.2 3.1 0.0055 15.2 2.1 1.8 1 1 0 1 1 1 1 AAA domain Spectrin PF00435.16 gi|159042550|ref|YP_001541802.1| - 0.0063 16.7 1.4 3.8 7.8 0.5 3.1 1 1 1 2 2 2 0 Spectrin repeat MCPsignal PF00015.16 gi|159042550|ref|YP_001541802.1| - 0.0089 15.5 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Sec34 PF04136.10 gi|159042550|ref|YP_001541802.1| - 0.012 15.2 2.3 1.4 8.6 0.1 2.4 1 1 1 2 2 2 0 Sec34-like family Vac_Fusion PF02346.11 gi|159042550|ref|YP_001541802.1| - 0.018 14.4 10.9 5.8 6.4 0.1 4.9 2 1 2 5 5 5 0 Chordopoxvirus fusion protein DASH_Dam1 PF08653.5 gi|159042550|ref|YP_001541802.1| - 0.02 14.6 2.3 8.8 6.1 0.1 4.1 1 1 2 3 3 3 0 DASH complex subunit Dam1 Dynamitin PF04912.9 gi|159042550|ref|YP_001541802.1| - 0.024 13.4 1.2 0.23 10.2 0.3 2.3 1 1 2 3 3 3 0 Dynamitin Allexi_40kDa PF05549.6 gi|159042550|ref|YP_001541802.1| - 0.027 13.7 0.2 0.086 12.1 0.1 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein Myb_DNA-bind_4 PF13837.1 gi|159042550|ref|YP_001541802.1| - 0.028 14.5 5.2 44 4.2 3.6 3.9 1 1 0 1 1 1 0 Myb/SANT-like DNA-binding domain Hemagglutinin PF00509.13 gi|159042550|ref|YP_001541802.1| - 0.037 12.1 10.7 2.7 6.0 0.1 2.8 1 1 1 2 2 2 0 Haemagglutinin YlqD PF11068.3 gi|159042550|ref|YP_001541802.1| - 0.038 14.0 8.4 0.77 9.7 1.5 2.5 1 1 1 2 2 2 0 YlqD protein GAS PF13851.1 gi|159042550|ref|YP_001541802.1| - 0.049 12.8 7.9 0.039 13.1 4.2 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Ferritin-like PF12902.2 gi|159042550|ref|YP_001541802.1| - 0.055 13.0 2.4 2.4 7.6 1.6 2.5 1 1 0 1 1 1 0 Ferritin-like Endotoxin_N PF03945.9 gi|159042550|ref|YP_001541802.1| - 0.062 12.6 5.6 1.9 7.8 3.4 2.9 1 1 1 2 2 2 0 delta endotoxin, N-terminal domain DUF3552 PF12072.3 gi|159042550|ref|YP_001541802.1| - 0.064 12.4 10.7 1 8.5 3.5 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) GLE1 PF07817.8 gi|159042550|ref|YP_001541802.1| - 0.069 12.0 0.9 3.9 6.3 0.5 2.6 1 1 1 2 2 2 0 GLE1-like protein DUF1465 PF07323.7 gi|159042550|ref|YP_001541802.1| - 0.071 12.6 1.1 2.1 7.9 0.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) DUF2884 PF11101.3 gi|159042550|ref|YP_001541802.1| - 0.079 12.3 8.7 0.31 10.3 5.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) Sec8_exocyst PF04048.9 gi|159042550|ref|YP_001541802.1| - 0.083 12.5 3.0 0.16 11.5 0.8 2.3 2 1 0 2 2 1 0 Sec8 exocyst complex component specific domain HemX PF04375.9 gi|159042550|ref|YP_001541802.1| - 0.088 11.3 2.7 0.16 10.5 1.8 1.6 1 1 0 1 1 1 0 HemX DASH_Dad3 PF08656.5 gi|159042550|ref|YP_001541802.1| - 0.089 12.4 1.3 0.8 9.4 0.0 3.0 2 1 0 2 2 1 0 DASH complex subunit Dad3 LOH1CR12 PF10158.4 gi|159042550|ref|YP_001541802.1| - 0.1 12.3 3.8 3.7 7.3 0.2 3.1 1 1 2 3 3 3 0 Tumour suppressor protein KxDL PF10241.4 gi|159042550|ref|YP_001541802.1| - 0.12 12.2 6.1 12 5.8 0.1 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein DUF972 PF06156.8 gi|159042550|ref|YP_001541802.1| - 0.13 12.6 5.4 4.5 7.6 0.1 2.9 1 1 3 4 4 2 0 Protein of unknown function (DUF972) COG6 PF06419.6 gi|159042550|ref|YP_001541802.1| - 0.13 10.3 9.3 0.24 9.5 6.2 1.6 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 DASH_Duo1 PF08651.5 gi|159042550|ref|YP_001541802.1| - 0.13 11.8 0.3 1.5 8.4 0.1 2.5 1 1 1 2 2 2 0 DASH complex subunit Duo1 Baculo_gp64 PF03273.8 gi|159042550|ref|YP_001541802.1| - 0.13 10.3 0.8 10 4.1 0.0 2.6 1 1 2 3 3 3 0 Baculovirus gp64 envelope glycoprotein family RPW8 PF05659.6 gi|159042550|ref|YP_001541802.1| - 0.14 11.7 5.1 1.8 8.0 0.7 3.2 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Atg14 PF10186.4 gi|159042550|ref|YP_001541802.1| - 0.18 10.7 3.3 1.1 8.1 1.7 2.2 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin_2 PF01920.15 gi|159042550|ref|YP_001541802.1| - 0.18 11.5 6.7 6.3 6.6 2.6 3.5 2 1 0 2 2 1 0 Prefoldin subunit Cauli_AT PF03233.8 gi|159042550|ref|YP_001541802.1| - 0.2 11.3 9.1 1.1 8.8 0.2 3.0 2 1 1 3 3 3 0 Aphid transmission protein DUF16 PF01519.11 gi|159042550|ref|YP_001541802.1| - 0.21 11.8 9.9 5.9 7.1 6.1 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 FliD_C PF07195.7 gi|159042550|ref|YP_001541802.1| - 0.22 10.7 4.8 5.9 6.1 1.7 2.5 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Fzo_mitofusin PF04799.8 gi|159042550|ref|YP_001541802.1| - 0.31 10.3 3.7 2.8 7.2 2.5 2.4 1 1 0 1 1 1 0 fzo-like conserved region TMPIT PF07851.8 gi|159042550|ref|YP_001541802.1| - 0.32 10.0 6.9 0.18 10.8 0.1 2.3 2 1 1 3 3 2 0 TMPIT-like protein MscS_porin PF12795.2 gi|159042550|ref|YP_001541802.1| - 0.39 9.9 3.4 0.21 10.8 0.4 1.9 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain APG6 PF04111.7 gi|159042550|ref|YP_001541802.1| - 0.41 9.6 7.3 0.092 11.7 2.7 1.5 1 1 1 2 2 2 0 Autophagy protein Apg6 DUF4164 PF13747.1 gi|159042550|ref|YP_001541802.1| - 0.6 10.2 11.1 6.5 6.9 1.3 3.1 2 1 0 3 3 2 0 Domain of unknown function (DUF4164) Noelin-1 PF12308.3 gi|159042550|ref|YP_001541802.1| - 0.65 9.8 5.6 4.2 7.2 1.6 2.7 1 1 1 2 2 2 0 Neurogenesis glycoprotein Barstar PF01337.13 gi|159042550|ref|YP_001541802.1| - 0.72 9.7 5.2 40 4.1 1.3 3.8 1 1 1 3 3 3 0 Barstar (barnase inhibitor) Mod_r PF07200.8 gi|159042550|ref|YP_001541802.1| - 0.72 9.7 8.2 1.6 8.5 0.2 2.6 2 1 1 3 3 2 0 Modifier of rudimentary (Mod(r)) protein Snapin_Pallidin PF14712.1 gi|159042550|ref|YP_001541802.1| - 0.73 10.1 5.8 3.3 8.0 0.9 3.3 2 1 2 4 4 2 0 Snapin/Pallidin UPF0449 PF15136.1 gi|159042550|ref|YP_001541802.1| - 0.74 10.0 5.6 5.9 7.1 0.2 2.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 ISG65-75 PF11727.3 gi|159042550|ref|YP_001541802.1| - 0.75 8.7 3.2 5.2 6.0 1.7 2.4 1 1 0 1 1 1 0 Invariant surface glycoprotein YPEB PF14620.1 gi|159042550|ref|YP_001541802.1| - 0.76 8.7 6.1 0.71 8.8 2.1 2.4 2 1 0 2 2 2 0 YpeB sporulation ATP-synt_B PF00430.13 gi|159042550|ref|YP_001541802.1| - 0.81 9.5 3.9 2.9 7.7 0.9 2.6 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Jnk-SapK_ap_N PF09744.4 gi|159042550|ref|YP_001541802.1| - 0.88 9.5 15.7 0.82 9.6 1.1 3.3 1 1 1 3 3 3 0 JNK_SAPK-associated protein-1 Phage_Mu_Gam PF07352.7 gi|159042550|ref|YP_001541802.1| - 0.92 9.0 5.9 2.1 7.8 0.6 2.8 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein WASH_WAHD PF11945.3 gi|159042550|ref|YP_001541802.1| - 1.1 8.5 6.9 1.7 7.9 0.7 2.4 1 1 1 2 2 2 0 WAHD domain of WASH complex Peptidase_M75 PF09375.5 gi|159042550|ref|YP_001541802.1| - 1.1 8.5 3.3 50 3.0 2.0 2.9 1 1 1 2 2 2 0 Imelysin ING PF12998.2 gi|159042550|ref|YP_001541802.1| - 1.2 9.4 11.0 4.9 7.4 5.3 3.0 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding DUF4200 PF13863.1 gi|159042550|ref|YP_001541802.1| - 1.3 8.9 19.8 0.73 9.7 5.7 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Cast PF10174.4 gi|159042550|ref|YP_001541802.1| - 1.7 6.6 13.9 0.26 9.2 6.8 1.3 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Sipho_Gp157 PF05565.6 gi|159042550|ref|YP_001541802.1| - 1.7 8.2 10.4 0.94 9.0 0.4 3.0 2 1 2 4 4 3 0 Siphovirus Gp157 Med30 PF11315.3 gi|159042550|ref|YP_001541802.1| - 2.3 8.3 8.3 14 5.8 1.5 3.5 1 1 2 3 3 3 0 Mediator complex subunit 30 FXR1P_C PF12235.3 gi|159042550|ref|YP_001541802.1| - 5 7.2 12.7 8.4 6.4 0.2 3.8 1 1 1 2 2 1 0 Fragile X-related 1 protein C terminal Nup88 PF10168.4 gi|159042550|ref|YP_001541802.1| - 5.2 4.7 7.8 8.7 4.0 5.2 1.4 1 1 1 2 2 2 0 Nuclear pore component L31 PF09784.4 gi|159042550|ref|YP_001541802.1| - 5.4 7.1 7.0 4.1e+02 1.1 4.8 3.2 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 DUF3375 PF11855.3 gi|159042550|ref|YP_001541802.1| - 6.1 5.4 19.8 8.3e+02 -1.6 13.5 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3375) DUF3847 PF12958.2 gi|159042550|ref|YP_001541802.1| - 6.8 6.5 10.8 8.2 6.2 0.3 3.4 2 2 3 5 5 3 0 Protein of unknown function (DUF3847) MutS_III PF05192.13 gi|159042550|ref|YP_001541802.1| - 8 6.1 7.8 15 5.2 5.4 1.5 1 1 0 1 1 1 0 MutS domain III Ribosomal_S28e PF01200.13 gi|159042551|ref|YP_001541803.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S28e AAA_18 PF13238.1 gi|159042552|ref|YP_001541804.1| - 3e-13 50.2 0.0 4.1e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|159042552|ref|YP_001541804.1| - 8.9e-13 49.1 0.1 1.1e-12 48.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|159042552|ref|YP_001541804.1| - 2.1e-07 30.8 0.0 3.4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|159042552|ref|YP_001541804.1| - 0.00087 18.7 0.0 0.0016 17.8 0.0 1.5 1 0 0 1 1 1 1 Dephospho-CoA kinase KTI12 PF08433.5 gi|159042552|ref|YP_001541804.1| - 0.0013 17.9 0.0 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|159042552|ref|YP_001541804.1| - 0.0015 18.4 0.1 0.0023 17.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|159042552|ref|YP_001541804.1| - 0.01 15.7 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase APS_kinase PF01583.15 gi|159042552|ref|YP_001541804.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|159042552|ref|YP_001541804.1| - 0.026 14.2 0.6 0.058 13.1 0.4 1.8 1 1 0 1 1 1 0 Part of AAA domain ATP_bind_2 PF03668.10 gi|159042552|ref|YP_001541804.1| - 0.058 12.4 0.2 0.21 10.6 0.1 1.8 1 1 0 1 1 1 0 P-loop ATPase protein family Torsin PF06309.6 gi|159042552|ref|YP_001541804.1| - 0.084 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Torsin ArgK PF03308.11 gi|159042552|ref|YP_001541804.1| - 0.12 11.1 0.1 0.22 10.2 0.1 1.3 1 0 0 1 1 1 0 ArgK protein RNA_binding PF01877.12 gi|159042553|ref|YP_001541805.1| - 2.5e-22 79.1 0.3 3e-22 78.8 0.2 1.0 1 0 0 1 1 1 1 RNA binding EamA PF00892.15 gi|159042554|ref|YP_001541806.1| - 3.5e-19 69.0 37.7 1.6e-10 41.1 9.7 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|159042554|ref|YP_001541806.1| - 0.028 14.6 2.0 0.028 14.6 1.4 3.8 1 1 3 4 4 4 0 Multidrug resistance efflux transporter Ribosomal_S2 PF00318.15 gi|159042555|ref|YP_001541807.1| - 1.2e-36 125.9 0.0 3.8e-21 75.2 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2