# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF824 PF05688.11 gi|159040593|ref|YP_001539845.1| - 0.016 15.1 0.5 0.16 11.8 0.2 3.0 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) DUF3945 PF13101.6 gi|159040593|ref|YP_001539845.1| - 0.084 12.6 0.0 0.47 10.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) MG4 PF17789.1 gi|159040593|ref|YP_001539845.1| - 0.25 11.5 2.6 1.6 8.9 0.1 3.1 2 0 0 2 2 2 0 Macroglobulin domain MG4 Gp_dh_C PF02800.20 gi|159040593|ref|YP_001539845.1| - 3 7.4 5.3 5.7 6.5 0.5 2.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Stevor PF17410.2 gi|159040593|ref|YP_001539845.1| - 9.7 5.6 5.3 28 4.2 5.3 1.7 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Peptidase_S8 PF00082.22 gi|159040594|ref|YP_001539846.1| - 3.6e-07 29.8 0.0 6.2e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Subtilase family CarboxypepD_reg PF13620.6 gi|159040595|ref|YP_001539847.1| - 6.9e-08 32.7 1.3 0.0035 17.6 0.2 4.1 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|159040595|ref|YP_001539847.1| - 8.8e-05 22.3 4.5 0.00018 21.3 0.2 3.9 5 0 0 5 5 5 1 PEGA domain CarbopepD_reg_2 PF13715.6 gi|159040595|ref|YP_001539847.1| - 0.017 15.1 0.3 2.1 8.4 0.0 3.1 1 1 1 2 2 2 0 CarboxypepD_reg-like domain Ribosomal_S24e PF01282.19 gi|159040596|ref|YP_001539848.1| - 2.6e-17 62.5 0.0 4.4e-17 61.8 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein S24e AFOR_C PF01314.18 gi|159040597|ref|YP_001539849.1| - 4.7e-105 351.7 0.3 6e-105 351.4 0.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|159040597|ref|YP_001539849.1| - 4.6e-74 248.6 0.0 8.3e-74 247.8 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Na_H_Exchanger PF00999.21 gi|159040598|ref|YP_001539850.1| - 6e-31 107.6 54.8 7.6e-31 107.2 54.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|159040598|ref|YP_001539850.1| - 2.4e-12 47.1 5.7 7.1e-06 26.4 0.0 3.1 3 0 0 3 3 3 2 CBS domain Cpn60_TCP1 PF00118.24 gi|159040599|ref|YP_001539851.1| - 3.5e-182 606.4 4.3 4e-182 606.2 4.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SHOCT PF09851.9 gi|159040599|ref|YP_001539851.1| - 0.057 13.2 0.2 0.17 11.6 0.2 1.9 1 0 0 1 1 1 0 Short C-terminal domain LPD3 PF18798.1 gi|159040599|ref|YP_001539851.1| - 0.46 10.8 3.0 3.1 8.1 0.1 3.1 3 0 0 3 3 3 0 Large polyvalent protein-associated domain 3 Semialdhyde_dh PF01118.24 gi|159040600|ref|YP_001539852.1| - 4e-31 108.0 0.0 6.1e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|159040600|ref|YP_001539852.1| - 5.7e-25 88.5 0.0 7.9e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|159040600|ref|YP_001539852.1| - 0.0041 16.6 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Gp_dh_C PF02800.20 gi|159040600|ref|YP_001539852.1| - 0.0095 15.5 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|159040600|ref|YP_001539852.1| - 0.022 14.9 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.19 gi|159040600|ref|YP_001539852.1| - 0.03 15.0 0.0 0.067 13.9 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain DXP_reductoisom PF02670.16 gi|159040600|ref|YP_001539852.1| - 0.044 14.5 0.0 0.13 13.0 0.0 1.8 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.6 gi|159040600|ref|YP_001539852.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding GFO_IDH_MocA PF01408.22 gi|159040600|ref|YP_001539852.1| - 0.14 12.9 0.0 0.35 11.7 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.28 gi|159040601|ref|YP_001539853.1| - 1.3e-37 129.7 0.1 1.6e-37 129.4 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L5e PF17144.4 gi|159040602|ref|YP_001539854.1| - 1.6e-35 122.5 1.1 5e-24 85.1 0.1 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|159040602|ref|YP_001539854.1| - 7.6e-11 42.4 0.1 1.2e-10 41.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L18_c PF14204.6 gi|159040602|ref|YP_001539854.1| - 1.2e-09 38.9 1.4 2e-09 38.3 1.4 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.20 gi|159040603|ref|YP_001539855.1| - 4.3e-44 150.1 9.3 5.2e-44 149.8 9.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4019 PF13211.6 gi|159040603|ref|YP_001539855.1| - 0.0072 16.7 0.2 0.015 15.7 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4019) TrmB PF01978.19 gi|159040603|ref|YP_001539855.1| - 0.0076 16.1 0.8 20 5.1 0.1 3.2 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB DUF4258 PF14076.6 gi|159040603|ref|YP_001539855.1| - 0.014 15.8 0.2 1.5 9.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) SRP54_N PF02881.19 gi|159040603|ref|YP_001539855.1| - 0.071 13.3 0.1 16 5.8 0.1 2.6 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain Ribosomal_L32e PF01655.18 gi|159040604|ref|YP_001539856.1| - 1.7e-33 115.3 0.2 2.6e-33 114.7 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L32 DUF5387 PF17361.2 gi|159040605|ref|YP_001539857.1| - 0.17 11.5 0.3 0.24 11.0 0.3 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5387) ThiI PF02568.14 gi|159040606|ref|YP_001539858.1| - 2.5e-51 174.1 0.0 4.1e-51 173.4 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|159040606|ref|YP_001539858.1| - 9.8e-18 64.6 0.0 2.3e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|159040606|ref|YP_001539858.1| - 0.00016 21.3 0.0 0.16 11.4 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Pyrophosphatase PF00719.19 gi|159040607|ref|YP_001539859.1| - 7e-53 178.7 0.0 8.4e-53 178.4 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase MSP PF01716.18 gi|159040607|ref|YP_001539859.1| - 0.1 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Manganese-stabilising protein / photosystem II polypeptide AA_permease_2 PF13520.6 gi|159040609|ref|YP_001539861.1| - 4.6e-20 71.9 61.7 5.7e-20 71.6 61.7 1.0 1 0 0 1 1 1 1 Amino acid permease Pyr_redox_2 PF07992.14 gi|159040610|ref|YP_001539862.1| - 3.6e-15 56.0 0.6 7.2e-06 25.4 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|159040610|ref|YP_001539862.1| - 2.6e-10 39.6 0.1 0.00012 21.0 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|159040610|ref|YP_001539862.1| - 3.3e-09 36.8 0.3 1.7e-05 24.6 0.1 2.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|159040610|ref|YP_001539862.1| - 5.1e-09 35.8 0.4 0.00049 19.4 0.0 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|159040610|ref|YP_001539862.1| - 1.8e-08 33.9 2.2 0.0017 17.5 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|159040610|ref|YP_001539862.1| - 1.5e-06 27.6 1.2 0.00017 20.8 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|159040610|ref|YP_001539862.1| - 6e-06 25.7 0.1 8.8e-05 21.9 0.0 2.6 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.6 gi|159040610|ref|YP_001539862.1| - 2.3e-05 24.5 0.5 8.1e-05 22.8 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|159040610|ref|YP_001539862.1| - 6.2e-05 22.2 0.1 0.00014 21.1 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|159040610|ref|YP_001539862.1| - 0.00011 22.3 0.1 0.0024 17.9 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|159040610|ref|YP_001539862.1| - 0.0023 17.2 0.0 0.004 16.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|159040610|ref|YP_001539862.1| - 0.0051 17.4 0.0 2.4 8.8 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|159040610|ref|YP_001539862.1| - 0.083 11.7 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Adenylsucc_synt PF00709.21 gi|159040611|ref|YP_001539863.1| - 5e-69 233.2 0.0 2.3e-34 119.0 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.20 gi|159040612|ref|YP_001539864.1| - 4.9e-38 131.3 0.0 7.4e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|159040612|ref|YP_001539864.1| - 1.3e-31 109.1 0.1 3.3e-31 107.7 0.1 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF1297 PF06973.12 gi|159040613|ref|YP_001539865.1| - 1.5e-79 265.9 0.0 1.9e-79 265.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|159040613|ref|YP_001539865.1| - 9.7e-48 161.2 0.0 1.4e-47 160.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.12 gi|159040614|ref|YP_001539866.1| - 2.1e-58 197.0 0.0 3.7e-58 196.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|159040614|ref|YP_001539866.1| - 1.6e-39 134.6 0.0 2.3e-39 134.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) RimK PF08443.11 gi|159040614|ref|YP_001539866.1| - 0.015 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain TTL PF03133.15 gi|159040614|ref|YP_001539866.1| - 0.065 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family CPSase_L_D2 PF02786.17 gi|159040614|ref|YP_001539866.1| - 0.094 12.2 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Hexapep PF00132.24 gi|159040615|ref|YP_001539867.1| - 3.8e-20 70.8 12.1 1.5e-09 37.2 0.8 3.6 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|159040615|ref|YP_001539867.1| - 2e-08 33.8 11.8 0.00028 20.6 1.0 3.4 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase MetJ PF01340.20 gi|159040615|ref|YP_001539867.1| - 0.17 11.9 0.1 0.29 11.1 0.1 1.3 1 0 0 1 1 1 0 Met Apo-repressor, MetJ HupF_HypC PF01455.18 gi|159040615|ref|YP_001539867.1| - 0.28 11.4 6.3 0.57 10.4 1.0 3.5 3 1 1 4 4 4 0 HupF/HypC family TGT PF01702.18 gi|159040616|ref|YP_001539868.1| - 1.9e-63 214.7 0.0 3.7e-63 213.8 0.0 1.4 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|159040616|ref|YP_001539868.1| - 0.071 13.0 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) Lsm_C PF14894.6 gi|159040617|ref|YP_001539869.1| - 6e-23 80.4 2.3 1.1e-22 79.6 2.3 1.4 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|159040617|ref|YP_001539869.1| - 2.2e-08 33.7 0.6 5e-08 32.5 0.6 1.6 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|159040617|ref|YP_001539869.1| - 0.081 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Ataxin 2 SM domain RNA_pol_RpbG PF16992.5 gi|159040618|ref|YP_001539870.1| - 0.0038 17.3 0.0 0.0047 17.0 0.0 1.2 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G eIF-1a PF01176.19 gi|159040618|ref|YP_001539870.1| - 0.0096 15.7 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 PepX_C PF08530.10 gi|159040618|ref|YP_001539870.1| - 0.066 13.1 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Cpn60_TCP1 PF00118.24 gi|159040619|ref|YP_001539871.1| - 1.1e-179 598.3 12.5 1.2e-179 598.1 12.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|159040619|ref|YP_001539871.1| - 0.00068 19.6 3.0 0.013 15.4 0.6 2.4 2 0 0 2 2 2 2 DAK2 domain BRCT_2 PF16589.5 gi|159040619|ref|YP_001539871.1| - 0.086 13.3 0.0 10 6.6 0.0 2.6 2 0 0 2 2 2 0 BRCT domain, a BRCA1 C-terminus domain NUDIX PF00293.28 gi|159040620|ref|YP_001539872.1| - 2.8e-15 56.5 0.0 3.9e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Glu_synthase PF01645.17 gi|159040621|ref|YP_001539873.1| - 4.1e-100 335.5 6.9 1e-96 324.3 2.5 2.4 2 1 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|159040621|ref|YP_001539873.1| - 5e-17 62.3 0.5 1.2e-06 28.2 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|159040621|ref|YP_001539873.1| - 3.1e-10 39.6 13.1 1.5e-06 27.5 4.9 3.5 4 0 0 4 4 4 3 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|159040621|ref|YP_001539873.1| - 4.4e-06 25.9 8.1 7.7e-06 25.1 5.0 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|159040621|ref|YP_001539873.1| - 8.3e-05 21.9 0.5 8.3e-05 21.9 0.5 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|159040621|ref|YP_001539873.1| - 0.0018 17.8 3.2 0.0018 17.8 3.2 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|159040621|ref|YP_001539873.1| - 0.0035 16.6 0.5 0.016 14.4 0.1 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|159040621|ref|YP_001539873.1| - 0.15 11.4 4.2 0.13 11.5 1.1 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG GXGXG PF01493.19 gi|159040622|ref|YP_001539874.1| - 2.7e-27 95.6 7.3 6.2e-27 94.4 7.3 1.5 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|159040622|ref|YP_001539874.1| - 0.00029 21.1 0.1 0.0062 16.7 0.1 2.4 1 1 0 1 1 1 1 Glutamine amidotransferase domain Ribonuc_L-PSP PF01042.21 gi|159040623|ref|YP_001539875.1| - 8.8e-28 96.7 0.0 1.1e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_10 PF04967.12 gi|159040624|ref|YP_001539876.1| - 3.5e-06 26.7 0.1 6.1e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain DUF1955 PF09205.10 gi|159040624|ref|YP_001539876.1| - 0.025 14.4 0.6 0.041 13.6 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1955) HTH_24 PF13412.6 gi|159040624|ref|YP_001539876.1| - 0.18 11.4 1.9 2 8.0 0.0 3.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding SBP_bac_5 PF00496.22 gi|159040625|ref|YP_001539877.1| - 4.2e-25 88.5 4.8 4.9e-24 85.0 4.8 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle HTH_46 PF15977.5 gi|159040626|ref|YP_001539878.1| - 0.023 14.7 0.0 0.068 13.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Nitro_FeMo-Co PF02579.17 gi|159040627|ref|YP_001539879.1| - 2.7e-11 43.7 0.3 4.3e-11 43.0 0.0 1.5 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor DNase-RNase PF02577.14 gi|159040628|ref|YP_001539880.1| - 2.8e-38 130.5 0.1 3.5e-38 130.2 0.1 1.1 1 0 0 1 1 1 1 Bifunctional nuclease PhdYeFM_antitox PF02604.19 gi|159040628|ref|YP_001539880.1| - 0.12 12.2 0.0 0.45 10.4 0.0 1.9 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Trypsin_2 PF13365.6 gi|159040629|ref|YP_001539881.1| - 1.9e-29 103.5 1.5 2.9e-29 102.9 1.5 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|159040629|ref|YP_001539881.1| - 8.1e-16 58.5 0.0 1.5e-15 57.6 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|159040629|ref|YP_001539881.1| - 3.3e-12 46.5 0.0 7e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|159040629|ref|YP_001539881.1| - 4e-09 36.2 0.0 8.9e-09 35.1 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|159040629|ref|YP_001539881.1| - 4.3e-05 23.8 0.0 0.0001 22.6 0.0 1.7 1 0 0 1 1 1 1 PDZ domain Peptidase_S32 PF05579.13 gi|159040629|ref|YP_001539881.1| - 0.017 14.4 1.2 0.26 10.4 0.1 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S7 PF00949.21 gi|159040629|ref|YP_001539881.1| - 0.035 13.9 0.1 0.075 12.8 0.1 1.6 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease PDZ_1 PF12812.7 gi|159040629|ref|YP_001539881.1| - 0.039 14.0 0.0 0.086 12.9 0.0 1.6 1 0 0 1 1 1 0 PDZ-like domain Peptidase_S46 PF10459.9 gi|159040629|ref|YP_001539881.1| - 0.076 11.6 0.7 0.11 11.2 0.7 1.1 1 0 0 1 1 1 0 Peptidase S46 XPG_I PF00867.18 gi|159040632|ref|YP_001539884.1| - 7.9e-28 96.7 0.0 1.4e-27 95.8 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|159040632|ref|YP_001539884.1| - 8.9e-24 83.9 0.0 1.8e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|159040632|ref|YP_001539884.1| - 9.1e-07 29.4 0.0 2.7e-06 27.9 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|159040632|ref|YP_001539884.1| - 0.0026 17.8 0.0 0.0079 16.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|159040632|ref|YP_001539884.1| - 0.0051 17.4 0.0 0.017 15.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3560 PF12083.8 gi|159040632|ref|YP_001539884.1| - 1.4 9.1 4.9 3.2 7.9 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3560) CLP1_P PF16575.5 gi|159040633|ref|YP_001539885.1| - 3.6e-34 118.2 0.0 5.4e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|159040633|ref|YP_001539885.1| - 6.2e-05 23.1 0.0 8.5e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|159040633|ref|YP_001539885.1| - 0.002 18.0 0.2 0.0044 16.9 0.2 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|159040633|ref|YP_001539885.1| - 0.011 14.7 0.3 0.015 14.2 0.3 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_31 PF13614.6 gi|159040633|ref|YP_001539885.1| - 0.038 13.9 0.0 0.076 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|159040633|ref|YP_001539885.1| - 0.047 13.6 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ATP_bind_1 PF03029.17 gi|159040633|ref|YP_001539885.1| - 0.061 13.1 0.3 0.11 12.3 0.3 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF1611 PF07755.11 gi|159040633|ref|YP_001539885.1| - 0.11 11.8 0.1 1.5 8.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain SRP54 PF00448.22 gi|159040633|ref|YP_001539885.1| - 0.15 11.6 0.8 0.35 10.5 0.8 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|159040633|ref|YP_001539885.1| - 0.16 12.5 0.1 0.43 11.1 0.1 1.7 1 0 0 1 1 1 0 AAA domain PCNA_N PF00705.18 gi|159040634|ref|YP_001539886.1| - 7.8e-10 38.6 0.0 4e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|159040634|ref|YP_001539886.1| - 1.6e-08 34.8 0.2 3.1e-08 33.8 0.2 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|159040634|ref|YP_001539886.1| - 0.0019 17.3 0.2 0.012 14.7 0.1 1.9 2 0 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|159040634|ref|YP_001539886.1| - 0.0041 16.6 0.0 0.0064 16.0 0.0 1.3 1 1 0 1 1 1 1 Rad9 SusE PF14292.6 gi|159040634|ref|YP_001539886.1| - 0.039 14.2 0.0 0.12 12.6 0.1 1.8 2 0 0 2 2 2 0 SusE outer membrane protein Epimerase PF01370.21 gi|159040635|ref|YP_001539887.1| - 0.017 14.6 0.0 0.047 13.1 0.0 1.5 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family Thioredoxin PF00085.20 gi|159040636|ref|YP_001539888.1| - 2.5e-24 85.2 0.0 3.5e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|159040636|ref|YP_001539888.1| - 2.4e-06 28.0 0.3 0.00027 21.4 0.3 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|159040636|ref|YP_001539888.1| - 2.9e-05 23.8 0.1 3.5e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|159040636|ref|YP_001539888.1| - 0.00019 21.4 0.2 0.00055 19.9 0.1 1.9 1 1 1 2 2 2 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|159040636|ref|YP_001539888.1| - 0.00051 20.3 0.3 0.4 11.0 0.0 2.5 2 1 1 3 3 3 2 Thioredoxin-like Phosducin PF02114.16 gi|159040636|ref|YP_001539888.1| - 0.0024 16.8 0.0 0.0027 16.7 0.0 1.2 1 1 0 1 1 1 1 Phosducin OST3_OST6 PF04756.13 gi|159040636|ref|YP_001539888.1| - 0.0051 16.2 0.0 0.0085 15.5 0.0 1.3 1 1 0 1 1 1 1 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|159040636|ref|YP_001539888.1| - 0.031 14.2 0.0 0.3 11.1 0.0 2.2 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE PP2C_C PF07830.13 gi|159040636|ref|YP_001539888.1| - 0.089 13.3 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 Protein serine/threonine phosphatase 2C, C-terminal domain Thioredoxin_5 PF13743.6 gi|159040636|ref|YP_001539888.1| - 0.17 11.5 0.2 2.5 7.8 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin PsbW PF07123.12 gi|159040637|ref|YP_001539889.1| - 0.0066 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Photosystem II reaction centre W protein (PsbW) UBA_2 PF08587.11 gi|159040637|ref|YP_001539889.1| - 0.085 13.0 0.2 0.51 10.5 0.1 2.3 2 1 0 2 2 2 0 Ubiquitin associated domain (UBA) Wzz PF02706.15 gi|159040637|ref|YP_001539889.1| - 0.41 11.0 3.3 0.51 10.7 2.6 1.7 1 1 1 2 2 2 0 Chain length determinant protein NurA PF09376.10 gi|159040638|ref|YP_001539890.1| - 1.2e-17 64.4 0.8 5.4e-17 62.3 0.8 1.9 1 1 0 1 1 1 1 NurA domain Tox-HDC PF15656.6 gi|159040638|ref|YP_001539890.1| - 0.11 12.7 0.0 0.28 11.4 0.0 1.8 2 0 0 2 2 2 0 Toxin with a H, D/N and C signature DUF87 PF01935.17 gi|159040639|ref|YP_001539891.1| - 7.6e-18 65.4 0.4 1.7e-17 64.3 0.4 1.5 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|159040639|ref|YP_001539891.1| - 1.3e-09 37.4 0.0 1.1e-08 34.4 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|159040639|ref|YP_001539891.1| - 0.00034 20.9 0.0 0.14 12.4 0.0 2.4 1 1 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|159040639|ref|YP_001539891.1| - 0.0051 17.1 0.3 5.8 7.2 0.3 2.7 2 1 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|159040639|ref|YP_001539891.1| - 0.02 14.8 1.0 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MobB PF03205.14 gi|159040639|ref|YP_001539891.1| - 0.028 14.3 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.13 gi|159040639|ref|YP_001539891.1| - 0.059 12.5 0.0 0.16 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|159040639|ref|YP_001539891.1| - 0.079 13.3 0.1 0.71 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|159040639|ref|YP_001539891.1| - 0.089 12.1 0.0 0.5 9.7 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|159040639|ref|YP_001539891.1| - 0.098 12.7 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|159040639|ref|YP_001539891.1| - 0.11 13.0 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase VWA PF00092.28 gi|159040640|ref|YP_001539892.1| - 2.7e-18 66.8 0.0 6.9e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|159040640|ref|YP_001539892.1| - 3.6e-14 53.3 0.0 1.2e-13 51.7 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|159040640|ref|YP_001539892.1| - 9.8e-11 41.5 0.0 4.4e-10 39.3 0.1 2.0 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|159040640|ref|YP_001539892.1| - 3.6e-09 36.7 0.0 2.7e-08 33.9 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF58 PF01882.18 gi|159040640|ref|YP_001539892.1| - 1.8e-07 31.4 0.0 1.3e-05 25.3 0.0 3.0 3 0 0 3 3 3 1 Protein of unknown function DUF58 vWA-TerF-like PF10138.9 gi|159040640|ref|YP_001539892.1| - 0.00052 20.2 0.0 0.0012 19.0 0.0 1.6 1 0 0 1 1 1 1 vWA found in TerF C terminus MFS_1 PF07690.16 gi|159040641|ref|YP_001539893.1| - 2.7e-39 135.1 58.1 2.7e-39 135.1 58.1 3.3 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159040641|ref|YP_001539893.1| - 5.1e-09 35.5 40.3 5.6e-08 32.1 11.6 3.9 4 0 0 4 4 4 3 Sugar (and other) transporter Kinocilin PF15033.6 gi|159040641|ref|YP_001539893.1| - 0.013 15.2 0.3 0.013 15.2 0.3 2.4 3 0 0 3 3 3 0 Kinocilin protein Thioredoxin_4 PF13462.6 gi|159040642|ref|YP_001539894.1| - 2.9e-10 40.6 0.0 4.6e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin AAA_21 PF13304.6 gi|159040643|ref|YP_001539895.1| - 2e-11 44.3 0.5 2.8e-05 24.1 0.1 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|159040643|ref|YP_001539895.1| - 1.4e-08 34.8 0.1 0.00011 22.1 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|159040643|ref|YP_001539895.1| - 4.7e-07 30.5 0.0 8.8e-07 29.6 0.0 1.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|159040643|ref|YP_001539895.1| - 4.5e-06 26.3 0.1 0.00013 21.4 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|159040643|ref|YP_001539895.1| - 0.0021 17.7 0.0 0.0041 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|159040643|ref|YP_001539895.1| - 0.037 13.6 0.0 0.088 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|159040643|ref|YP_001539895.1| - 0.039 14.0 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_22 PF13401.6 gi|159040643|ref|YP_001539895.1| - 0.11 12.7 0.0 7.3 6.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|159040643|ref|YP_001539895.1| - 0.14 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.23 gi|159040643|ref|YP_001539895.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|159040643|ref|YP_001539895.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MRPL52 PF18699.1 gi|159040643|ref|YP_001539895.1| - 0.18 12.0 0.0 0.34 11.1 0.0 1.3 1 0 0 1 1 1 0 Mitoribosomal protein mL52 Oxidored_q2 PF00420.24 gi|159040645|ref|YP_001539897.1| - 0.46 10.1 5.2 0.18 11.5 1.8 2.1 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L adh_short_C2 PF13561.6 gi|159040646|ref|YP_001539898.1| - 6.1e-66 222.3 2.0 7.6e-66 222.0 2.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159040646|ref|YP_001539898.1| - 2e-56 190.6 2.3 2.6e-56 190.2 2.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159040646|ref|YP_001539898.1| - 1.9e-09 37.7 0.3 2.7e-09 37.2 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|159040646|ref|YP_001539898.1| - 0.015 14.8 0.2 0.024 14.1 0.2 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|159040646|ref|YP_001539898.1| - 0.043 13.2 0.2 0.11 11.8 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF460 PF04312.13 gi|159040646|ref|YP_001539898.1| - 0.072 12.8 1.2 0.18 11.5 0.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF460) Shikimate_DH PF01488.20 gi|159040646|ref|YP_001539898.1| - 0.11 12.6 0.2 0.81 9.7 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Oxidored_q3 PF00499.20 gi|159040647|ref|YP_001539899.1| - 0.0022 17.7 4.3 0.0026 17.5 4.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABC2_membrane_2 PF12679.7 gi|159040647|ref|YP_001539899.1| - 0.077 12.3 2.5 0.079 12.2 2.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein BaxI_1 PF12811.7 gi|159040647|ref|YP_001539899.1| - 0.09 12.3 5.2 0.1 12.2 5.2 1.0 1 0 0 1 1 1 0 Bax inhibitor 1 like NTP_transferase PF00483.23 gi|159040648|ref|YP_001539900.1| - 6.5e-24 84.9 0.0 7.4e-24 84.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|159040648|ref|YP_001539900.1| - 1.2e-07 32.2 0.0 1.4e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain FUR PF01475.19 gi|159040650|ref|YP_001539902.1| - 1.9e-24 86.1 0.0 2.1e-24 86.0 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family DUF2551 PF10826.8 gi|159040650|ref|YP_001539902.1| - 0.0062 16.7 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|159040650|ref|YP_001539902.1| - 0.015 15.7 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|159040650|ref|YP_001539902.1| - 0.023 14.5 0.4 0.054 13.3 0.4 1.7 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|159040650|ref|YP_001539902.1| - 0.025 14.6 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|159040650|ref|YP_001539902.1| - 0.078 12.8 0.1 17 5.4 0.1 3.0 2 1 1 3 3 3 0 Homeodomain-like domain PIN PF01850.21 gi|159040650|ref|YP_001539902.1| - 0.095 13.2 0.0 0.13 12.8 0.0 1.2 1 0 0 1 1 1 0 PIN domain Rubrerythrin PF02915.17 gi|159040651|ref|YP_001539903.1| - 7e-21 75.1 6.7 5.1e-20 72.3 6.0 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|159040651|ref|YP_001539903.1| - 5.4e-07 29.6 4.2 0.0032 17.4 0.4 2.2 1 1 1 2 2 2 2 Ferritin-like domain Ferritin_2 PF13668.6 gi|159040651|ref|YP_001539903.1| - 0.002 18.4 0.6 0.0031 17.7 0.4 1.4 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|159040651|ref|YP_001539903.1| - 0.38 10.8 2.7 1.7 8.6 0.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF892) DUF3501 PF12007.8 gi|159040652|ref|YP_001539904.1| - 1.4e-49 168.6 0.1 1.7e-49 168.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) EF-G-binding_N PF07299.11 gi|159040652|ref|YP_001539904.1| - 0.15 12.6 1.0 0.32 11.6 0.1 2.0 2 1 0 2 2 2 0 Elongation factor G-binding protein, N-terminal TMP-TENI PF02581.17 gi|159040653|ref|YP_001539905.1| - 7.4e-57 191.6 0.2 8.5e-57 191.4 0.2 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|159040653|ref|YP_001539905.1| - 8.8e-08 31.9 1.2 1.4e-07 31.2 1.2 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.12 gi|159040653|ref|YP_001539905.1| - 0.053 12.7 0.1 6 6.0 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|159040653|ref|YP_001539905.1| - 0.13 11.7 3.1 0.35 10.3 0.1 2.6 2 2 1 3 3 3 0 Histidine biosynthesis protein IMPDH PF00478.25 gi|159040653|ref|YP_001539905.1| - 0.21 10.5 4.4 0.62 9.0 3.8 2.0 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain HK PF02110.15 gi|159040654|ref|YP_001539906.1| - 2.6e-84 282.5 1.6 2.9e-84 282.3 1.6 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|159040654|ref|YP_001539906.1| - 0.00032 20.3 0.5 0.00038 20.0 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|159040654|ref|YP_001539906.1| - 0.00039 19.9 0.5 0.00057 19.3 0.5 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase GARS_N PF02844.15 gi|159040654|ref|YP_001539906.1| - 0.035 14.9 0.1 0.081 13.7 0.1 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Glu_synthase PF01645.17 gi|159040655|ref|YP_001539907.1| - 8.7e-24 84.3 2.1 3.3e-23 82.4 2.1 1.9 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|159040655|ref|YP_001539907.1| - 4.9e-19 68.6 3.5 2.7e-12 46.4 1.7 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|159040655|ref|YP_001539907.1| - 3.4e-05 23.4 0.4 5e-05 22.9 0.4 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase tRNA-synt_2 PF00152.20 gi|159040656|ref|YP_001539908.1| - 2.2e-51 174.8 0.0 2.6e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) MMR_HSR1_C PF08438.10 gi|159040657|ref|YP_001539909.1| - 3.6e-35 120.9 0.1 7.7e-35 119.8 0.0 1.6 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|159040657|ref|YP_001539909.1| - 2.5e-18 66.2 0.0 7.7e-18 64.6 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|159040657|ref|YP_001539909.1| - 2.5e-09 37.0 0.0 5.5e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|159040657|ref|YP_001539909.1| - 1.1e-06 28.3 0.2 0.00032 20.3 0.1 2.6 2 0 0 2 2 2 2 Ferrous iron transport protein B DUF460 PF04312.13 gi|159040657|ref|YP_001539909.1| - 0.0049 16.6 0.0 0.0082 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF460) GTP_EFTU PF00009.27 gi|159040657|ref|YP_001539909.1| - 0.055 13.0 0.4 9 5.8 0.0 2.7 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain ACP PF06857.11 gi|159040658|ref|YP_001539910.1| - 0.11 12.7 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Malonate decarboxylase delta subunit (MdcD) Band_7 PF01145.25 gi|159040659|ref|YP_001539911.1| - 9.5e-34 116.9 1.5 1.2e-33 116.6 1.5 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|159040659|ref|YP_001539911.1| - 0.00019 21.2 0.2 0.00047 19.9 0.1 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family pPIWI_RE_REase PF18154.1 gi|159040659|ref|YP_001539911.1| - 0.0042 17.0 0.2 0.0096 15.9 0.2 1.6 1 0 0 1 1 1 1 REase associating with pPIWI_RE NfeD PF01957.18 gi|159040660|ref|YP_001539912.1| - 2.2e-11 44.0 3.2 2.2e-11 44.0 3.2 2.8 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|159040660|ref|YP_001539912.1| - 3.5e-06 27.0 0.0 7.8e-06 25.9 0.0 1.5 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|159040660|ref|YP_001539912.1| - 0.0013 17.8 0.1 0.0026 16.8 0.1 1.5 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF2190 PF09956.9 gi|159040660|ref|YP_001539912.1| - 0.0019 18.6 2.8 0.0019 18.6 0.4 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2190) MnhB PF04039.13 gi|159040661|ref|YP_001539913.1| - 0.0029 17.9 0.5 0.0038 17.5 0.5 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Tetraspanin PF00335.20 gi|159040661|ref|YP_001539913.1| - 0.0036 17.0 1.0 0.0041 16.9 1.0 1.0 1 0 0 1 1 1 1 Tetraspanin family TctB PF07331.11 gi|159040661|ref|YP_001539913.1| - 0.011 16.1 4.2 0.013 15.8 4.2 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2207 PF09972.9 gi|159040661|ref|YP_001539913.1| - 0.014 14.2 3.1 0.015 14.1 3.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2070 PF09843.9 gi|159040661|ref|YP_001539913.1| - 0.036 12.3 5.6 0.041 12.2 5.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DHHC PF01529.20 gi|159040661|ref|YP_001539913.1| - 0.92 9.6 3.1 1.2 9.2 3.1 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Cpta_toxin PF07254.12 gi|159040661|ref|YP_001539913.1| - 1.8 8.6 5.5 0.94 9.5 2.2 1.9 1 1 1 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system SecE PF00584.20 gi|159040661|ref|YP_001539913.1| - 2.8 7.9 10.1 0.88 9.5 0.1 2.5 2 1 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex FxsA PF04186.13 gi|159040663|ref|YP_001539915.1| - 0.00096 19.2 1.9 0.07 13.3 0.3 2.1 2 0 0 2 2 2 2 FxsA cytoplasmic membrane protein DUF2627 PF11118.8 gi|159040663|ref|YP_001539915.1| - 0.01 16.4 1.6 0.19 12.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) Nitrate_red_gam PF02665.14 gi|159040663|ref|YP_001539915.1| - 0.017 14.6 0.5 0.095 12.2 0.1 1.9 2 0 0 2 2 2 0 Nitrate reductase gamma subunit DUF2371 PF10177.9 gi|159040663|ref|YP_001539915.1| - 0.023 14.9 1.5 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Neurensin PF14927.6 gi|159040663|ref|YP_001539915.1| - 0.082 12.6 2.7 3 7.6 0.1 2.3 2 0 0 2 2 2 0 Neurensin DUF3040 PF11239.8 gi|159040663|ref|YP_001539915.1| - 0.17 12.2 7.8 3.2 8.1 1.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Phage_holin_3_6 PF07332.11 gi|159040663|ref|YP_001539915.1| - 0.2 11.7 4.0 6.3 6.9 0.4 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF202 PF02656.15 gi|159040663|ref|YP_001539915.1| - 0.77 10.3 6.6 2.3 8.8 1.8 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DUF2207 PF09972.9 gi|159040663|ref|YP_001539915.1| - 0.92 8.2 3.7 1.4 7.6 3.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3185 PF11381.8 gi|159040663|ref|YP_001539915.1| - 1.2 9.2 12.2 1.2 9.2 1.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF5362 PF17319.2 gi|159040663|ref|YP_001539915.1| - 2.2 8.2 11.9 2 8.3 3.7 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5362) ATP1G1_PLM_MAT8 PF02038.16 gi|159040663|ref|YP_001539915.1| - 9.2 5.8 7.5 1.2 8.6 0.9 2.4 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF2848 PF11010.8 gi|159040664|ref|YP_001539916.1| - 5.8e-62 208.7 0.1 6.5e-62 208.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2848) Aldedh PF00171.22 gi|159040665|ref|YP_001539917.1| - 1.1e-151 505.5 0.0 1.2e-151 505.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|159040665|ref|YP_001539917.1| - 2.9e-05 23.3 0.0 0.0021 17.2 0.0 2.2 1 1 1 2 2 2 2 Acyl-CoA reductase (LuxC) DUF1487 PF07368.11 gi|159040665|ref|YP_001539917.1| - 0.00028 20.4 0.0 0.24 10.8 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF1487) MR_MLE_C PF13378.6 gi|159040666|ref|YP_001539918.1| - 6.4e-62 209.0 0.0 8.7e-62 208.6 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|159040666|ref|YP_001539918.1| - 3.9e-11 43.2 0.0 7.3e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SGL PF08450.12 gi|159040667|ref|YP_001539919.1| - 1e-71 241.4 0.1 1.2e-71 241.2 0.1 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|159040667|ref|YP_001539919.1| - 0.023 14.7 0.1 0.48 10.6 0.0 2.7 2 0 0 2 2 2 0 NHL repeat Reg_prop PF07494.11 gi|159040667|ref|YP_001539919.1| - 0.11 12.7 0.4 19 5.9 0.3 3.7 3 0 0 3 3 3 0 Two component regulator propeller Glyoxal_oxid_N PF07250.11 gi|159040667|ref|YP_001539919.1| - 0.12 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus F420_oxidored PF03807.17 gi|159040668|ref|YP_001539920.1| - 5.3e-14 52.6 0.0 9.2e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|159040668|ref|YP_001539920.1| - 4.3e-05 23.0 0.1 6.8e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|159040668|ref|YP_001539920.1| - 0.00016 21.9 0.0 0.00078 19.7 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|159040668|ref|YP_001539920.1| - 0.00056 19.5 0.0 0.00089 18.9 0.0 1.4 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|159040668|ref|YP_001539920.1| - 0.0049 16.5 0.1 0.017 14.7 0.1 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|159040668|ref|YP_001539920.1| - 0.0089 16.0 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|159040668|ref|YP_001539920.1| - 0.017 15.0 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DinI PF06183.13 gi|159040668|ref|YP_001539920.1| - 0.074 13.4 0.0 14 6.1 0.0 2.3 2 0 0 2 2 2 0 DinI-like family Shikimate_DH PF01488.20 gi|159040668|ref|YP_001539920.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF2070 PF09843.9 gi|159040669|ref|YP_001539921.1| - 0.02 13.2 7.0 0.021 13.1 7.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Strabismus PF06638.11 gi|159040669|ref|YP_001539921.1| - 4.3 5.9 5.2 4.3 5.9 5.2 1.0 1 0 0 1 1 1 0 Strabismus protein DUF2754 PF10953.8 gi|159040669|ref|YP_001539921.1| - 5.4 7.3 16.5 4.5 7.6 0.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2754) ROK PF00480.20 gi|159040670|ref|YP_001539922.1| - 1.2e-33 116.9 0.2 1.5e-33 116.6 0.2 1.0 1 0 0 1 1 1 1 ROK family FtsA PF14450.6 gi|159040670|ref|YP_001539922.1| - 0.056 13.9 0.2 0.076 13.4 0.2 1.8 1 1 0 1 1 1 0 Cell division protein FtsA SIS_2 PF13580.6 gi|159040671|ref|YP_001539923.1| - 4.7e-34 117.4 0.0 6.2e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 SIS domain DUF2529 PF10740.9 gi|159040671|ref|YP_001539923.1| - 2.5e-07 30.5 0.0 0.0022 17.7 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2529) SIS PF01380.22 gi|159040671|ref|YP_001539923.1| - 4.6e-07 29.7 0.0 2.1e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 SIS domain Glyco_hydro_42 PF02449.15 gi|159040672|ref|YP_001539924.1| - 1.7e-48 165.9 0.0 2.3e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 gi|159040672|ref|YP_001539924.1| - 3.9e-15 55.9 0.0 6.5e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_14 PF01373.17 gi|159040672|ref|YP_001539924.1| - 9.6e-07 28.1 0.3 0.0064 15.5 0.1 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 14 Glyco_hydro_35 PF01301.19 gi|159040672|ref|YP_001539924.1| - 3.6e-06 26.8 0.0 7.4e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Cellulase PF00150.18 gi|159040672|ref|YP_001539924.1| - 7.5e-05 22.3 0.0 0.00038 20.0 0.0 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) LBP_M PF17385.2 gi|159040672|ref|YP_001539924.1| - 0.019 14.5 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 Lacto-N-biose phosphorylase central domain Amidohydro_2 PF04909.14 gi|159040672|ref|YP_001539924.1| - 0.07 12.9 0.1 0.21 11.3 0.1 1.7 1 1 0 1 1 1 0 Amidohydrolase OFeT_1 PF16955.5 gi|159040673|ref|YP_001539925.1| - 2.5e-107 357.2 18.5 2.9e-107 357.1 18.5 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter DUF3185 PF11381.8 gi|159040673|ref|YP_001539925.1| - 0.07 13.2 2.3 6.8 6.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF973 PF06157.11 gi|159040674|ref|YP_001539926.1| - 1.4e-05 24.3 40.5 0.00015 20.9 40.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|159040674|ref|YP_001539926.1| - 2.9 8.2 36.0 5.1 7.4 17.2 4.3 2 2 0 3 3 3 0 Protein of unknown function (DUF996) PBP_like PF12727.7 gi|159040675|ref|YP_001539927.1| - 3.3e-62 209.1 0.0 5.6e-62 208.3 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|159040675|ref|YP_001539927.1| - 4.7e-43 146.7 0.1 8.2e-43 145.9 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|159040675|ref|YP_001539927.1| - 6e-24 84.3 0.1 9.8e-24 83.7 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|159040675|ref|YP_001539927.1| - 2.2e-14 53.4 0.0 5.9e-14 52.0 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) OpuAC PF04069.12 gi|159040675|ref|YP_001539927.1| - 0.0007 19.3 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_11 PF13531.6 gi|159040675|ref|YP_001539927.1| - 0.0047 16.7 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|159040675|ref|YP_001539927.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein T2SSE PF00437.20 gi|159040675|ref|YP_001539927.1| - 0.2 10.7 0.0 0.32 10.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MFS_1 PF07690.16 gi|159040676|ref|YP_001539928.1| - 9.9e-40 136.5 72.5 8.1e-26 90.8 43.2 4.0 2 1 2 4 4 4 3 Major Facilitator Superfamily MFS_3 PF05977.13 gi|159040676|ref|YP_001539928.1| - 3.6e-05 22.3 8.8 3.6e-05 22.3 8.8 2.0 2 0 0 2 2 2 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|159040676|ref|YP_001539928.1| - 0.0011 17.9 14.6 0.0011 17.9 14.6 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter PUCC PF03209.15 gi|159040676|ref|YP_001539928.1| - 0.079 11.9 25.4 0.0083 15.2 3.4 3.3 1 1 0 2 2 2 0 PUCC protein OATP PF03137.20 gi|159040676|ref|YP_001539928.1| - 0.082 11.2 20.1 0.16 10.2 0.1 3.8 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_9 PF13527.7 gi|159040677|ref|YP_001539929.1| - 6.9e-28 97.3 0.0 1.4e-27 96.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|159040677|ref|YP_001539929.1| - 4.7e-09 36.5 0.0 8.8e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|159040677|ref|YP_001539929.1| - 3.8e-06 27.2 0.1 7.8e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|159040677|ref|YP_001539929.1| - 0.0081 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|159040677|ref|YP_001539929.1| - 0.053 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Thermopsin PF05317.11 gi|159040678|ref|YP_001539930.1| - 1.8e-61 207.9 12.2 1.8e-61 207.9 12.2 1.8 2 0 0 2 2 2 1 Thermopsin CbiA PF01656.23 gi|159040679|ref|YP_001539931.1| - 7e-06 26.1 0.0 9.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|159040679|ref|YP_001539931.1| - 0.0011 18.9 1.5 0.026 14.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|159040679|ref|YP_001539931.1| - 0.0023 17.5 1.0 0.0023 17.4 0.2 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|159040679|ref|YP_001539931.1| - 0.22 10.8 0.1 0.35 10.1 0.1 1.3 1 0 0 1 1 1 0 ATPase MipZ Foamy_virus_ENV PF03408.14 gi|159040680|ref|YP_001539932.1| - 0.23 9.2 2.6 0.26 9.1 2.6 1.0 1 0 0 1 1 1 0 Foamy virus envelope protein Radical_SAM PF04055.21 gi|159040681|ref|YP_001539933.1| - 5.6e-21 75.6 0.6 7.8e-20 71.9 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|159040681|ref|YP_001539933.1| - 3.7e-06 27.1 0.1 8e-05 22.8 0.0 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|159040681|ref|YP_001539933.1| - 1.5e-05 25.3 0.1 6.8e-05 23.2 0.0 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain ComA PF02679.15 gi|159040681|ref|YP_001539933.1| - 0.041 13.4 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DHHA1 PF02272.19 gi|159040681|ref|YP_001539933.1| - 0.056 13.8 0.1 0.11 12.9 0.1 1.5 1 0 0 1 1 1 0 DHHA1 domain AP_endonuc_2 PF01261.24 gi|159040681|ref|YP_001539933.1| - 0.17 11.3 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-Di19 PF05605.12 gi|159040681|ref|YP_001539933.1| - 8.9 6.7 9.8 2.4 8.5 0.3 3.0 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Glyco_hydro_15 PF00723.21 gi|159040682|ref|YP_001539934.1| - 3.8e-25 88.6 3.4 4.5e-10 38.9 0.2 3.9 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|159040682|ref|YP_001539934.1| - 5.1e-06 25.9 0.0 9.2e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region DUF4965 PF16335.5 gi|159040682|ref|YP_001539934.1| - 0.035 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4965) TED_complement PF07678.14 gi|159040682|ref|YP_001539934.1| - 0.075 12.0 0.0 0.19 10.7 0.0 1.6 2 0 0 2 2 2 0 A-macroglobulin TED domain OTCace PF00185.24 gi|159040684|ref|YP_001539936.1| - 3.9e-59 199.2 0.0 9.8e-59 197.9 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|159040684|ref|YP_001539936.1| - 6.7e-45 152.7 0.0 1e-44 152.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XdhC_C PF13478.6 gi|159040684|ref|YP_001539936.1| - 0.077 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Radical_SAM PF04055.21 gi|159040685|ref|YP_001539937.1| - 9.3e-12 45.6 0.2 1e-10 42.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|159040685|ref|YP_001539937.1| - 2.4e-06 27.9 0.0 5e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159040685|ref|YP_001539937.1| - 0.0012 18.9 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|159040685|ref|YP_001539937.1| - 0.031 14.8 1.0 0.17 12.4 1.0 2.3 1 1 0 1 1 1 0 Iron-sulfur cluster-binding domain DEAD PF00270.29 gi|159040687|ref|YP_001539939.1| - 4.3e-29 101.5 0.0 2e-27 96.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|159040687|ref|YP_001539939.1| - 1e-18 67.7 0.0 6.6e-17 61.9 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|159040687|ref|YP_001539939.1| - 4.9e-18 65.6 0.0 1.1e-17 64.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|159040687|ref|YP_001539939.1| - 4.5e-08 33.3 0.0 9.8e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_11 PF13086.6 gi|159040687|ref|YP_001539939.1| - 0.0053 16.6 0.1 0.02 14.7 0.1 2.0 1 1 1 2 2 2 1 AAA domain HypA PF01155.19 gi|159040687|ref|YP_001539939.1| - 0.022 14.8 0.1 0.06 13.4 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|159040687|ref|YP_001539939.1| - 0.032 13.0 0.0 0.049 12.4 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain SecA_DEAD PF07517.14 gi|159040687|ref|YP_001539939.1| - 0.033 13.5 0.0 0.088 12.1 0.0 1.7 2 0 0 2 2 2 0 SecA DEAD-like domain AAA_25 PF13481.6 gi|159040687|ref|YP_001539939.1| - 0.041 13.5 0.2 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|159040687|ref|YP_001539939.1| - 0.1 12.9 0.0 0.3 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.21 gi|159040687|ref|YP_001539939.1| - 0.11 12.0 0.4 0.38 10.2 0.0 2.0 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain ATP-cone PF03477.16 gi|159040688|ref|YP_001539940.1| - 1.6e-08 35.0 0.7 1.9e-08 34.8 0.7 1.2 1 0 0 1 1 1 1 ATP cone domain Ribosomal_S10 PF00338.22 gi|159040689|ref|YP_001539941.1| - 6.3e-25 87.3 0.0 7.7e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|159040689|ref|YP_001539941.1| - 0.098 13.5 0.0 0.22 12.4 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain Methyltransf_31 PF13847.6 gi|159040690|ref|YP_001539942.1| - 1.8e-15 57.1 0.0 2.3e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159040690|ref|YP_001539942.1| - 2.1e-12 47.6 0.0 3.6e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159040690|ref|YP_001539942.1| - 3e-09 36.9 0.0 8.1e-09 35.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|159040690|ref|YP_001539942.1| - 3.6e-08 34.0 0.0 6.3e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159040690|ref|YP_001539942.1| - 2.5e-06 28.1 0.0 4.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159040690|ref|YP_001539942.1| - 4.4e-06 26.2 0.0 6.4e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|159040690|ref|YP_001539942.1| - 2e-05 24.2 0.2 3.7e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|159040690|ref|YP_001539942.1| - 3.2e-05 23.5 0.0 6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|159040690|ref|YP_001539942.1| - 4.8e-05 23.2 0.0 8.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|159040690|ref|YP_001539942.1| - 0.00015 21.2 0.0 0.0005 19.5 0.0 1.8 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|159040690|ref|YP_001539942.1| - 0.00024 21.1 0.0 0.00033 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|159040690|ref|YP_001539942.1| - 0.00024 20.5 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|159040690|ref|YP_001539942.1| - 0.00084 18.8 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|159040690|ref|YP_001539942.1| - 0.0051 16.7 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 gi|159040690|ref|YP_001539942.1| - 0.0052 16.0 0.0 0.041 13.0 0.0 2.0 1 1 1 2 2 2 1 Histidine-specific methyltransferase, SAM-dependent N2227 PF07942.12 gi|159040690|ref|YP_001539942.1| - 0.0053 16.0 0.0 0.055 12.6 0.0 2.1 2 0 0 2 2 2 1 N2227-like protein Met_10 PF02475.16 gi|159040690|ref|YP_001539942.1| - 0.0089 15.8 0.1 0.018 14.8 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein YqhG PF11079.8 gi|159040690|ref|YP_001539942.1| - 0.043 12.8 0.1 0.072 12.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function MTS PF05175.14 gi|159040690|ref|YP_001539942.1| - 0.048 13.2 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|159040690|ref|YP_001539942.1| - 0.081 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase UPF0146 PF03686.13 gi|159040690|ref|YP_001539942.1| - 0.1 12.5 0.1 0.41 10.5 0.1 2.0 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0146) UDPG_MGDP_dh PF00984.19 gi|159040690|ref|YP_001539942.1| - 0.17 12.1 0.0 0.45 10.8 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Asp_protease_2 PF13650.6 gi|159040691|ref|YP_001539943.1| - 1.2e-07 32.2 0.1 2.3e-07 31.4 0.1 1.5 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|159040691|ref|YP_001539943.1| - 2.5e-06 28.0 0.0 5.8e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|159040691|ref|YP_001539943.1| - 0.0027 18.0 0.1 0.0058 16.9 0.1 1.6 1 1 0 1 1 1 1 Retroviral aspartyl protease DUF2969 PF11184.8 gi|159040692|ref|YP_001539944.1| - 0.06 13.8 0.1 0.11 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2969) Caroten_synth PF04240.12 gi|159040694|ref|YP_001539946.1| - 3.7e-30 105.4 24.1 7e-30 104.5 24.1 1.5 1 1 0 1 1 1 1 Carotenoid biosynthesis protein Tachykinin PF02202.16 gi|159040694|ref|YP_001539946.1| - 0.25 11.3 1.8 0.47 10.5 0.0 2.3 2 0 0 2 2 2 0 Tachykinin family SUR7 PF06687.12 gi|159040694|ref|YP_001539946.1| - 0.36 10.4 8.4 3.1 7.4 0.3 2.6 2 0 0 2 2 2 0 SUR7/PalI family Glyco_hydro_130 PF04041.13 gi|159040695|ref|YP_001539947.1| - 2.8e-70 236.8 0.0 3.4e-70 236.5 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_38N PF01074.22 gi|159040696|ref|YP_001539948.1| - 8.9e-65 218.9 0.0 1.4e-64 218.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|159040696|ref|YP_001539948.1| - 9.9e-38 130.4 0.0 1.6e-37 129.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|159040696|ref|YP_001539948.1| - 2.7e-18 65.9 0.0 4.5e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|159040696|ref|YP_001539948.1| - 1.3e-11 44.4 0.2 3.3e-11 43.1 0.2 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain HAD_2 PF13419.6 gi|159040697|ref|YP_001539949.1| - 0.00024 21.2 0.0 0.00074 19.6 0.0 1.9 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|159040697|ref|YP_001539949.1| - 0.014 15.8 0.1 0.046 14.1 0.1 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|159040697|ref|YP_001539949.1| - 0.15 12.3 0.0 5.6 7.2 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DBC1 PF14443.6 gi|159040697|ref|YP_001539949.1| - 0.2 11.6 0.0 0.32 11.0 0.0 1.2 1 0 0 1 1 1 0 DBC1 MoaC PF01967.21 gi|159040698|ref|YP_001539950.1| - 1.7e-59 199.8 0.0 1.7e-32 112.4 0.0 2.2 2 0 0 2 2 2 2 MoaC family EFP PF01132.20 gi|159040699|ref|YP_001539951.1| - 0.13 12.3 0.2 0.63 10.1 0.0 2.0 2 0 0 2 2 2 0 Elongation factor P (EF-P) OB domain Topoisom_bac PF01131.20 gi|159040701|ref|YP_001539953.1| - 1.2e-108 363.8 0.0 1.4e-108 363.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|159040701|ref|YP_001539953.1| - 8.4e-16 58.1 0.0 4.7e-15 55.7 0.0 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.6 gi|159040701|ref|YP_001539953.1| - 1.3e-05 25.6 0.0 3.7e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|159040701|ref|YP_001539953.1| - 0.043 14.2 0.0 0.42 11.1 0.0 2.3 2 0 0 2 2 2 0 Toprim-like HTH_5 PF01022.20 gi|159040703|ref|YP_001539955.1| - 2.2e-11 43.4 0.0 4.1e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|159040703|ref|YP_001539955.1| - 1.7e-08 34.4 0.0 3.2e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|159040703|ref|YP_001539955.1| - 4.4e-06 26.4 0.1 2.4e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|159040703|ref|YP_001539955.1| - 4.6e-06 26.4 0.1 0.0029 17.4 0.0 2.6 1 1 1 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|159040703|ref|YP_001539955.1| - 4.7e-06 26.4 0.0 7.9e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|159040703|ref|YP_001539955.1| - 0.00019 20.9 0.0 0.0004 19.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|159040703|ref|YP_001539955.1| - 0.0028 17.6 0.0 0.0051 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|159040703|ref|YP_001539955.1| - 0.025 14.7 0.0 0.04 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|159040703|ref|YP_001539955.1| - 0.14 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain 2-oxogl_dehyd_N PF16078.5 gi|159040703|ref|YP_001539955.1| - 0.19 11.4 0.0 0.51 10.0 0.0 1.7 2 0 0 2 2 2 0 2-oxoglutarate dehydrogenase N-terminus HTH_3 PF01381.22 gi|159040704|ref|YP_001539956.1| - 2.1e-09 37.3 0.2 4.1e-09 36.3 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|159040704|ref|YP_001539956.1| - 9.8e-08 31.9 0.2 1.7e-07 31.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|159040704|ref|YP_001539956.1| - 1.4e-06 28.5 0.0 2.7e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|159040704|ref|YP_001539956.1| - 0.00015 21.6 0.0 0.00032 20.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|159040704|ref|YP_001539956.1| - 0.00025 21.3 0.5 0.00057 20.2 0.5 1.6 1 0 0 1 1 1 1 Archaeal TRASH domain DUF134 PF02001.16 gi|159040704|ref|YP_001539956.1| - 0.057 14.0 0.1 0.12 12.9 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function DUF134 CENP-B_N PF04218.13 gi|159040704|ref|YP_001539956.1| - 0.061 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|159040704|ref|YP_001539956.1| - 0.089 12.6 0.0 0.23 11.3 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain zf-FCS PF06467.14 gi|159040704|ref|YP_001539956.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF4428 PF14471.6 gi|159040704|ref|YP_001539956.1| - 0.2 11.6 0.7 0.83 9.6 0.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) ZZ PF00569.17 gi|159040704|ref|YP_001539956.1| - 0.27 11.1 1.0 4.3 7.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, ZZ type Sgf11 PF08209.11 gi|159040704|ref|YP_001539956.1| - 0.28 10.8 0.1 0.28 10.8 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Peptidase_M20 PF01546.28 gi|159040705|ref|YP_001539957.1| - 6.2e-31 107.7 0.0 7.9e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|159040705|ref|YP_001539957.1| - 8.7e-18 64.2 0.0 1.4e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|159040705|ref|YP_001539957.1| - 1.6e-06 27.9 0.0 2.5e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|159040705|ref|YP_001539957.1| - 0.00019 20.6 0.0 0.11 11.5 0.0 2.6 3 0 0 3 3 3 2 M42 glutamyl aminopeptidase Creatininase PF02633.14 gi|159040706|ref|YP_001539958.1| - 7.5e-60 202.4 0.0 8.4e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Beta-lactamase PF00144.24 gi|159040707|ref|YP_001539959.1| - 4.9e-65 219.9 0.0 6.6e-65 219.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|159040707|ref|YP_001539959.1| - 1.1e-32 112.0 0.2 4.7e-32 109.9 0.2 2.1 2 1 1 3 3 3 1 Pab87 octamerisation domain Phage_FRD3 PF05798.11 gi|159040707|ref|YP_001539959.1| - 0.029 14.7 0.1 0.077 13.3 0.1 1.7 1 0 0 1 1 1 0 Bacteriophage FRD3 protein HSBP1 PF06825.12 gi|159040710|ref|YP_001539962.1| - 2.2e-06 27.4 11.7 0.001 18.9 3.3 3.9 1 1 2 3 3 3 2 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.12 gi|159040710|ref|YP_001539962.1| - 0.00012 22.2 1.4 0.00016 21.7 0.3 1.7 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus CorA PF01544.18 gi|159040710|ref|YP_001539962.1| - 0.0019 17.6 1.2 0.0022 17.4 1.2 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein YvrJ PF12841.7 gi|159040710|ref|YP_001539962.1| - 0.0041 16.6 0.6 0.39 10.3 0.2 2.8 1 1 1 2 2 2 1 YvrJ protein family UPF0184 PF03670.13 gi|159040710|ref|YP_001539962.1| - 0.011 16.1 4.0 0.049 14.0 0.5 2.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) NPV_P10 PF05531.12 gi|159040710|ref|YP_001539962.1| - 0.011 16.1 0.8 0.21 12.1 0.8 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CdvA PF18822.1 gi|159040710|ref|YP_001539962.1| - 0.024 14.4 1.2 0.042 13.7 1.2 1.5 1 0 0 1 1 1 0 CdvA-like coiled-coil domain BLOC1_2 PF10046.9 gi|159040710|ref|YP_001539962.1| - 0.036 14.4 1.0 0.11 12.8 0.1 2.2 2 1 1 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|159040710|ref|YP_001539962.1| - 0.05 13.6 0.6 0.1 12.6 0.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) FliD_C PF07195.12 gi|159040710|ref|YP_001539962.1| - 0.057 12.8 0.1 0.19 11.1 0.0 1.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DASH_Dam1 PF08653.10 gi|159040710|ref|YP_001539962.1| - 0.062 13.1 0.6 4.7 7.1 0.1 2.4 1 1 1 2 2 2 0 DASH complex subunit Dam1 DUF948 PF06103.11 gi|159040710|ref|YP_001539962.1| - 0.063 13.6 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) LPP PF04728.13 gi|159040710|ref|YP_001539962.1| - 0.063 13.7 1.5 5.3 7.5 0.1 2.9 2 1 1 3 3 3 0 Lipoprotein leucine-zipper Matrilin_ccoil PF10393.9 gi|159040710|ref|YP_001539962.1| - 0.069 13.0 0.2 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Apolipoprotein PF01442.18 gi|159040710|ref|YP_001539962.1| - 0.072 13.0 0.1 0.1 12.5 0.1 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain CagA PF03507.13 gi|159040710|ref|YP_001539962.1| - 0.086 12.8 0.4 0.18 11.7 0.4 1.5 1 1 1 2 2 2 0 CagA exotoxin TSC22 PF01166.18 gi|159040710|ref|YP_001539962.1| - 0.089 13.1 0.2 0.58 10.5 0.0 2.2 2 1 0 2 2 2 0 TSC-22/dip/bun family MtrG PF04210.13 gi|159040710|ref|YP_001539962.1| - 0.096 12.6 0.9 15 5.5 0.2 2.9 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF16 PF01519.16 gi|159040710|ref|YP_001539962.1| - 0.1 13.1 0.1 0.15 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 FlaC_arch PF05377.11 gi|159040710|ref|YP_001539962.1| - 0.1 13.0 0.2 0.62 10.5 0.2 2.3 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) TraF_2 PF13729.6 gi|159040710|ref|YP_001539962.1| - 0.16 11.3 0.6 0.21 10.9 0.6 1.3 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein Hemagglutinin PF00509.18 gi|159040710|ref|YP_001539962.1| - 0.17 10.3 2.2 0.31 9.4 2.2 1.4 1 1 0 1 1 1 0 Haemagglutinin XhlA PF10779.9 gi|159040710|ref|YP_001539962.1| - 0.19 11.9 2.4 1.6 9.0 2.4 2.3 1 1 0 1 1 1 0 Haemolysin XhlA Syntaxin_2 PF14523.6 gi|159040710|ref|YP_001539962.1| - 1.1 9.7 4.4 1.2 9.6 2.5 2.0 2 1 0 2 2 2 0 Syntaxin-like protein NTPase_I-T PF01931.18 gi|159040712|ref|YP_001539964.1| - 8e-44 149.3 0.0 9e-44 149.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Aminotran_1_2 PF00155.21 gi|159040716|ref|YP_001539968.1| - 2.1e-49 168.6 0.0 2.5e-49 168.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|159040716|ref|YP_001539968.1| - 2.8e-06 26.9 0.0 4.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|159040716|ref|YP_001539968.1| - 0.0047 15.5 0.0 0.0068 15.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme PALP PF00291.25 gi|159040717|ref|YP_001539969.1| - 7.7e-71 238.9 0.1 9.5e-71 238.6 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|159040717|ref|YP_001539969.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AA_permease_2 PF13520.6 gi|159040718|ref|YP_001539970.1| - 5.9e-39 134.1 52.4 5.9e-39 134.1 52.4 2.3 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|159040718|ref|YP_001539970.1| - 4.7e-20 71.6 62.7 4.7e-20 71.6 62.7 2.3 1 1 1 2 2 2 1 Amino acid permease IGPS PF00218.21 gi|159040719|ref|YP_001539971.1| - 1.4e-51 175.1 0.0 1.6e-51 174.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|159040719|ref|YP_001539971.1| - 0.0007 19.1 0.2 0.0014 18.1 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|159040719|ref|YP_001539971.1| - 0.0047 16.1 0.0 0.0069 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Ribosomal_S6e PF01092.19 gi|159040722|ref|YP_001539974.1| - 1e-28 99.8 0.0 1.3e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e RNA_pol_Rpc34 PF05158.12 gi|159040723|ref|YP_001539975.1| - 0.0066 15.9 0.0 0.022 14.1 0.0 1.7 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit TrmB PF01978.19 gi|159040723|ref|YP_001539975.1| - 0.0084 16.0 0.1 0.015 15.2 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|159040723|ref|YP_001539975.1| - 0.01 16.3 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|159040723|ref|YP_001539975.1| - 0.022 14.7 0.1 0.041 13.8 0.1 1.4 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|159040723|ref|YP_001539975.1| - 0.07 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC tRNA-synt_1g PF09334.11 gi|159040724|ref|YP_001539976.1| - 1.3e-148 495.0 0.0 1.5e-148 494.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|159040724|ref|YP_001539976.1| - 2.1e-12 46.1 0.0 8.8e-06 24.2 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|159040724|ref|YP_001539976.1| - 3.3e-09 36.9 0.1 7.3e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|159040724|ref|YP_001539976.1| - 1.5e-06 27.8 0.0 2.5e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain zinc_ribbon_2 PF13240.6 gi|159040724|ref|YP_001539976.1| - 0.25 11.1 6.1 2.9 7.7 0.6 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|159040724|ref|YP_001539976.1| - 0.31 11.1 3.8 0.56 10.3 3.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|159040724|ref|YP_001539976.1| - 1.6 8.3 9.1 6.9 6.2 0.7 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|159040724|ref|YP_001539976.1| - 2.5 8.4 8.5 2.6 8.3 0.7 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|159040724|ref|YP_001539976.1| - 7.7 6.7 7.0 0.76 9.9 0.3 2.5 2 1 1 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|159040724|ref|YP_001539976.1| - 8.3 6.0 6.6 6.5 6.4 2.5 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding PQQ_2 PF13360.6 gi|159040725|ref|YP_001539977.1| - 4.8e-28 98.3 0.5 4.8e-17 62.3 0.4 2.7 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|159040725|ref|YP_001539977.1| - 6.8e-23 79.5 13.9 2.3e-06 27.2 0.1 6.7 6 0 0 6 6 6 6 PQQ enzyme repeat PQQ_3 PF13570.6 gi|159040725|ref|YP_001539977.1| - 2.4e-13 50.1 15.0 0.0064 16.9 0.1 7.8 7 2 2 9 9 9 6 PQQ-like domain CzcE PF16986.5 gi|159040725|ref|YP_001539977.1| - 0.018 15.4 0.9 4.4 7.7 0.0 3.4 3 0 0 3 3 3 0 Heavy-metal resistance protein CzcE HTH_5 PF01022.20 gi|159040726|ref|YP_001539978.1| - 3.8e-05 23.5 0.0 7.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|159040726|ref|YP_001539978.1| - 0.00026 20.8 0.0 0.00061 19.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|159040726|ref|YP_001539978.1| - 0.0011 18.7 0.0 0.0022 17.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|159040726|ref|YP_001539978.1| - 0.088 12.9 0.0 0.47 10.6 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain GTP-bdg_N PF13167.6 gi|159040727|ref|YP_001539979.1| - 2.9e-21 76.0 0.0 6e-21 74.9 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|159040727|ref|YP_001539979.1| - 5.2e-15 55.8 1.1 1.1e-14 54.8 1.1 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|159040727|ref|YP_001539979.1| - 1.1e-13 51.3 0.0 2.5e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|159040727|ref|YP_001539979.1| - 3.2e-06 26.8 0.1 8e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|159040727|ref|YP_001539979.1| - 0.001 18.7 0.5 0.1 12.1 0.0 2.6 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|159040727|ref|YP_001539979.1| - 0.0015 18.5 0.0 0.0031 17.5 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|159040727|ref|YP_001539979.1| - 0.018 14.9 0.2 7.3 6.5 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase SRPRB PF09439.10 gi|159040727|ref|YP_001539979.1| - 0.02 14.3 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|159040727|ref|YP_001539979.1| - 0.047 13.4 1.4 1.1 9.0 1.4 2.6 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|159040727|ref|YP_001539979.1| - 0.097 13.2 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Lambda_CIII PF02061.16 gi|159040727|ref|YP_001539979.1| - 0.14 12.3 0.1 0.64 10.1 0.0 2.2 2 0 0 2 2 1 0 Lambda Phage CIII cobW PF02492.19 gi|159040727|ref|YP_001539979.1| - 0.19 11.3 2.7 4.8 6.7 0.2 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Pcc1 PF09341.10 gi|159040728|ref|YP_001539980.1| - 8.5e-05 22.6 0.0 0.00011 22.3 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Baculo_PEP_C PF04513.12 gi|159040729|ref|YP_001539981.1| - 1.4e-06 28.4 17.7 0.00023 21.2 6.5 3.5 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.9 gi|159040729|ref|YP_001539981.1| - 3.7e-06 27.0 49.9 0.0054 16.8 11.7 4.4 1 1 3 4 4 4 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 gi|159040729|ref|YP_001539981.1| - 2e-05 24.1 24.9 0.0058 16.0 9.6 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) DUF948 PF06103.11 gi|159040729|ref|YP_001539981.1| - 2.1e-05 24.7 16.6 0.091 13.0 1.6 4.6 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Mod_r PF07200.13 gi|159040729|ref|YP_001539981.1| - 6.7e-05 23.0 40.3 0.0087 16.2 5.2 4.0 1 1 4 5 5 5 3 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.22 gi|159040729|ref|YP_001539981.1| - 7.5e-05 22.9 46.9 0.00031 20.9 8.8 4.7 2 1 3 5 5 4 2 Seryl-tRNA synthetase N-terminal domain DUF4201 PF13870.6 gi|159040729|ref|YP_001539981.1| - 0.00014 21.7 47.3 0.0014 18.4 20.5 4.0 2 2 2 4 4 4 2 Domain of unknown function (DUF4201) SlyX PF04102.12 gi|159040729|ref|YP_001539981.1| - 0.00014 22.4 22.9 0.19 12.4 0.2 5.5 2 2 3 5 5 5 2 SlyX Syntaxin_2 PF14523.6 gi|159040729|ref|YP_001539981.1| - 0.00016 21.9 35.4 0.04 14.3 1.7 4.9 2 1 3 5 5 5 2 Syntaxin-like protein APG6_N PF17675.1 gi|159040729|ref|YP_001539981.1| - 0.00026 21.5 51.4 0.16 12.5 4.0 5.0 1 1 2 3 3 2 1 Apg6 coiled-coil region YmgB PF10798.8 gi|159040729|ref|YP_001539981.1| - 0.0004 20.1 1.6 0.0072 16.1 0.0 3.1 2 0 0 2 2 2 1 Biofilm development protein YmgB/AriR WXG100 PF06013.12 gi|159040729|ref|YP_001539981.1| - 0.00044 20.4 2.2 9 6.6 0.0 5.1 3 2 1 5 5 4 0 Proteins of 100 residues with WXG APG17 PF04108.12 gi|159040729|ref|YP_001539981.1| - 0.00045 19.4 4.3 0.00045 19.4 4.3 3.7 1 1 2 3 3 3 1 Autophagy protein Apg17 DUF4795 PF16043.5 gi|159040729|ref|YP_001539981.1| - 0.00046 19.9 43.0 0.059 13.0 8.8 3.9 1 1 2 3 3 3 3 Domain of unknown function (DUF4795) PI3K_P85_iSH2 PF16454.5 gi|159040729|ref|YP_001539981.1| - 0.00077 19.1 34.7 0.061 12.9 0.8 4.4 1 1 1 3 3 3 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF1664 PF07889.12 gi|159040729|ref|YP_001539981.1| - 0.00082 19.4 23.4 0.18 11.9 4.5 4.4 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) KELK PF15796.5 gi|159040729|ref|YP_001539981.1| - 0.0013 19.1 6.0 0.0013 19.1 6.0 5.0 2 2 2 4 4 4 1 KELK-motif containing domain of MRCK Ser/Thr protein kinase BLOC1_2 PF10046.9 gi|159040729|ref|YP_001539981.1| - 0.0014 18.9 32.6 0.05 13.9 3.3 5.0 2 2 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|159040729|ref|YP_001539981.1| - 0.0016 17.4 46.4 0.025 13.5 17.1 3.1 1 1 2 3 3 3 2 Spc7 kinetochore protein Phlebovirus_NSM PF07246.11 gi|159040729|ref|YP_001539981.1| - 0.0021 17.5 5.6 0.0021 17.5 5.6 3.3 1 1 2 3 3 2 1 Phlebovirus nonstructural protein NS-M AAA_13 PF13166.6 gi|159040729|ref|YP_001539981.1| - 0.0023 16.7 36.2 0.0024 16.6 13.5 2.2 1 1 1 2 2 2 1 AAA domain MscS_porin PF12795.7 gi|159040729|ref|YP_001539981.1| - 0.0023 17.5 4.4 0.0023 17.5 4.4 3.3 1 1 1 3 3 3 1 Mechanosensitive ion channel porin domain IFT57 PF10498.9 gi|159040729|ref|YP_001539981.1| - 0.0028 16.7 28.7 0.045 12.7 8.3 2.9 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Laminin_II PF06009.12 gi|159040729|ref|YP_001539981.1| - 0.0031 17.6 34.5 0.057 13.4 13.6 3.3 2 1 1 3 3 3 2 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|159040729|ref|YP_001539981.1| - 0.0031 17.6 44.7 0.029 14.4 7.0 5.0 1 1 4 5 5 5 3 TPR/MLP1/MLP2-like protein FlxA PF14282.6 gi|159040729|ref|YP_001539981.1| - 0.0035 17.3 20.0 0.58 10.2 0.8 4.7 2 2 2 4 4 4 1 FlxA-like protein Fib_alpha PF08702.10 gi|159040729|ref|YP_001539981.1| - 0.0051 17.0 5.2 0.0051 17.0 5.2 3.5 2 2 1 3 3 3 1 Fibrinogen alpha/beta chain family GAS PF13851.6 gi|159040729|ref|YP_001539981.1| - 0.0054 16.1 4.7 0.0054 16.1 4.7 4.5 1 1 3 4 4 3 1 Growth-arrest specific micro-tubule binding TolA_bind_tri PF16331.5 gi|159040729|ref|YP_001539981.1| - 0.0092 16.0 3.5 0.0092 16.0 3.5 4.9 1 1 4 5 5 5 1 TolA binding protein trimerisation FlaC_arch PF05377.11 gi|159040729|ref|YP_001539981.1| - 0.012 16.0 36.1 0.41 11.1 3.4 5.8 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) SOAR PF16533.5 gi|159040729|ref|YP_001539981.1| - 0.012 15.5 1.0 0.012 15.5 1.0 4.4 2 2 2 4 4 4 0 STIM1 Orai1-activating region KASH_CCD PF14662.6 gi|159040729|ref|YP_001539981.1| - 0.012 15.4 41.9 0.16 11.8 12.6 2.9 1 1 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH COG2 PF06148.11 gi|159040729|ref|YP_001539981.1| - 0.017 15.2 25.9 0.11 12.5 5.8 3.6 2 2 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Sec34 PF04136.15 gi|159040729|ref|YP_001539981.1| - 0.027 14.4 21.0 0.5 10.2 6.3 4.0 1 1 3 4 4 4 0 Sec34-like family Atg14 PF10186.9 gi|159040729|ref|YP_001539981.1| - 0.028 13.5 48.4 0.087 11.9 14.3 3.7 1 1 2 3 3 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 NPV_P10 PF05531.12 gi|159040729|ref|YP_001539981.1| - 0.043 14.3 19.0 1.9 9.0 5.0 4.9 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.11 gi|159040729|ref|YP_001539981.1| - 0.046 14.3 31.4 2.4 8.8 7.9 4.9 1 1 4 5 5 5 0 Syntaxin 6, N-terminal DUF3584 PF12128.8 gi|159040729|ref|YP_001539981.1| - 0.048 11.2 36.3 0.0015 16.2 25.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3450 PF11932.8 gi|159040729|ref|YP_001539981.1| - 0.057 12.7 25.2 0.26 10.5 5.8 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) Filament PF00038.21 gi|159040729|ref|YP_001539981.1| - 0.083 12.5 39.1 0.21 11.2 37.1 2.5 1 1 1 2 2 2 0 Intermediate filament protein ApoLp-III PF07464.11 gi|159040729|ref|YP_001539981.1| - 0.12 12.5 24.2 0.31 11.1 1.3 4.0 1 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) ArAE_2 PF10334.9 gi|159040729|ref|YP_001539981.1| - 0.12 12.1 5.3 4.5 7.1 0.1 3.8 1 1 2 4 4 4 0 Aromatic acid exporter family member 2 DUF4763 PF15960.5 gi|159040729|ref|YP_001539981.1| - 0.13 11.6 31.5 0.8 9.0 8.8 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) T3SSipB PF16535.5 gi|159040729|ref|YP_001539981.1| - 0.13 12.7 13.6 0.07 13.6 2.2 3.2 1 1 2 3 3 3 0 Type III cell invasion protein SipB Occludin_ELL PF07303.13 gi|159040729|ref|YP_001539981.1| - 0.14 12.9 24.2 0.32 11.8 0.9 4.4 1 1 4 6 6 6 0 Occludin homology domain Bacillus_HBL PF05791.11 gi|159040729|ref|YP_001539981.1| - 0.14 11.9 22.5 0.071 12.9 6.5 3.7 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) SKA2 PF16740.5 gi|159040729|ref|YP_001539981.1| - 0.15 11.8 33.6 2.3 8.0 1.4 5.8 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 2 DOG1 PF14144.6 gi|159040729|ref|YP_001539981.1| - 0.18 12.1 5.6 2.2 8.6 0.2 3.7 3 0 0 3 3 3 0 Seed dormancy control FUSC PF04632.12 gi|159040729|ref|YP_001539981.1| - 0.19 10.2 4.4 1.2 7.6 0.6 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family TMF_TATA_bd PF12325.8 gi|159040729|ref|YP_001539981.1| - 0.2 11.9 45.6 0.37 11.0 16.2 4.2 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding PspA_IM30 PF04012.12 gi|159040729|ref|YP_001539981.1| - 0.2 11.2 38.6 0.087 12.4 2.6 5.2 1 1 3 4 4 4 0 PspA/IM30 family EzrA PF06160.12 gi|159040729|ref|YP_001539981.1| - 0.26 9.4 38.8 6.9 4.7 16.3 3.2 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA ATG16 PF08614.11 gi|159040729|ref|YP_001539981.1| - 0.26 11.5 43.5 0.16 12.1 16.5 4.0 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) DUF1729 PF08354.10 gi|159040729|ref|YP_001539981.1| - 0.27 10.1 14.1 0.61 8.9 0.8 3.6 2 2 2 4 4 4 0 Domain of unknown function (DUF1729) ZapB PF06005.12 gi|159040729|ref|YP_001539981.1| - 0.29 11.6 53.6 0.89 10.0 6.6 5.7 1 1 4 5 5 5 0 Cell division protein ZapB Fez1 PF06818.15 gi|159040729|ref|YP_001539981.1| - 0.37 11.2 44.0 0.13 12.7 13.4 3.3 1 1 1 2 2 1 0 Fez1 HOOK PF05622.12 gi|159040729|ref|YP_001539981.1| - 0.38 8.8 46.7 0.12 10.4 16.6 2.3 1 1 1 2 2 2 0 HOOK protein YabA PF06156.13 gi|159040729|ref|YP_001539981.1| - 0.4 11.3 39.5 2.4 8.8 2.5 5.2 1 1 3 4 4 4 0 Initiation control protein YabA LPP PF04728.13 gi|159040729|ref|YP_001539981.1| - 0.46 10.9 16.7 16 6.0 0.1 5.9 3 2 2 5 5 4 0 Lipoprotein leucine-zipper HAP1_N PF04849.13 gi|159040729|ref|YP_001539981.1| - 0.49 9.5 37.8 0.046 12.9 14.1 2.7 1 1 0 2 2 2 0 HAP1 N-terminal conserved region DUF5082 PF16888.5 gi|159040729|ref|YP_001539981.1| - 0.51 10.6 35.6 1.5 9.2 3.7 5.1 1 1 2 4 4 4 0 Domain of unknown function (DUF5082) DUF2203 PF09969.9 gi|159040729|ref|YP_001539981.1| - 0.54 11.0 30.0 0.68 10.7 1.9 4.6 2 2 2 4 4 3 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|159040729|ref|YP_001539981.1| - 0.67 9.1 30.5 0.41 9.8 2.8 4.0 1 1 3 4 4 4 0 TMPIT-like protein MCPsignal PF00015.21 gi|159040729|ref|YP_001539981.1| - 0.78 9.5 9.4 3.2 7.5 0.4 3.4 1 1 4 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Spectrin PF00435.21 gi|159040729|ref|YP_001539981.1| - 0.9 10.1 27.0 1.5 9.3 9.9 4.1 1 1 0 2 2 2 0 Spectrin repeat DUF2730 PF10805.8 gi|159040729|ref|YP_001539981.1| - 0.9 9.7 24.0 2.1 8.5 0.1 4.4 2 2 2 4 4 4 0 Protein of unknown function (DUF2730) Rab5-bind PF09311.11 gi|159040729|ref|YP_001539981.1| - 1 8.7 36.0 2.8 7.3 13.3 3.5 1 1 2 3 3 3 0 Rabaptin-like protein Tektin PF03148.14 gi|159040729|ref|YP_001539981.1| - 1.1 8.0 40.8 1 8.0 2.5 4.2 1 1 4 5 5 5 0 Tektin family DUF489 PF04356.12 gi|159040729|ref|YP_001539981.1| - 1.5 8.8 15.7 1.3 9.0 0.7 3.6 1 1 2 4 4 4 0 Protein of unknown function (DUF489) Med30 PF11315.8 gi|159040729|ref|YP_001539981.1| - 1.7 8.8 30.3 3.4 7.8 9.3 4.2 1 1 2 3 3 3 0 Mediator complex subunit 30 Fzo_mitofusin PF04799.13 gi|159040729|ref|YP_001539981.1| - 2 7.9 24.6 3.4 7.2 1.9 4.5 1 1 4 5 5 5 0 fzo-like conserved region GLE1 PF07817.13 gi|159040729|ref|YP_001539981.1| - 2 7.5 13.9 0.07 12.3 4.1 2.6 2 2 1 3 3 3 0 GLE1-like protein DUF2935 PF11155.8 gi|159040729|ref|YP_001539981.1| - 2.2 8.7 13.9 8.7 6.7 0.5 3.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) PI_PP_I PF18363.1 gi|159040729|ref|YP_001539981.1| - 2.2 8.5 8.9 8.9 6.6 0.1 3.4 2 2 2 4 4 4 0 Phosphoinositide phosphatase insertion domain DUF1993 PF09351.10 gi|159040729|ref|YP_001539981.1| - 2.2 8.4 8.0 8 6.6 0.2 3.6 1 1 2 4 4 4 0 Domain of unknown function (DUF1993) Prominin PF05478.11 gi|159040729|ref|YP_001539981.1| - 2.3 6.0 21.5 2.4 6.0 4.7 2.1 1 1 1 2 2 2 0 Prominin DegS PF05384.11 gi|159040729|ref|YP_001539981.1| - 2.6 7.5 34.5 1 8.8 3.1 4.3 2 2 3 5 5 4 0 Sensor protein DegS DivIC PF04977.15 gi|159040729|ref|YP_001539981.1| - 3.3 7.5 40.6 2.1 8.2 5.7 6.2 2 2 3 5 5 5 0 Septum formation initiator DASH_Dam1 PF08653.10 gi|159040729|ref|YP_001539981.1| - 3.5 7.5 12.1 39 4.1 0.2 6.1 4 3 1 6 6 6 0 DASH complex subunit Dam1 Snapin_Pallidin PF14712.6 gi|159040729|ref|YP_001539981.1| - 3.6 8.1 33.5 3.2 8.3 6.0 5.0 2 2 2 4 4 4 0 Snapin/Pallidin HAUS-augmin3 PF14932.6 gi|159040729|ref|YP_001539981.1| - 4.5 6.8 36.9 5.5 6.5 12.7 3.2 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 3 DUF3086 PF11285.8 gi|159040729|ref|YP_001539981.1| - 4.6 6.3 21.6 0.33 10.0 0.1 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF3086) kleA_kleC PF17383.2 gi|159040729|ref|YP_001539981.1| - 4.8 7.6 27.3 5.9 7.3 0.2 5.8 2 2 4 6 6 6 0 Uncharacterized KorC regulated protein A V_ATPase_I PF01496.19 gi|159040729|ref|YP_001539981.1| - 5.3 4.8 27.8 3.2 5.5 10.8 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family FapA PF03961.13 gi|159040729|ref|YP_001539981.1| - 5.6 5.4 42.3 6.8 5.2 16.1 3.4 1 1 2 3 3 3 0 Flagellar Assembly Protein A Golgin_A5 PF09787.9 gi|159040729|ref|YP_001539981.1| - 5.8 6.3 40.9 0.37 10.2 16.6 3.1 1 1 2 3 3 3 0 Golgin subfamily A member 5 Lectin_N PF03954.14 gi|159040729|ref|YP_001539981.1| - 6.9 6.4 11.6 7.2 6.4 0.5 3.4 2 2 1 3 3 3 0 Hepatic lectin, N-terminal domain YkyA PF10368.9 gi|159040729|ref|YP_001539981.1| - 6.9 6.3 42.9 0.026 14.2 14.4 3.9 2 1 1 3 3 3 0 Putative cell-wall binding lipoprotein DUF1043 PF06295.12 gi|159040729|ref|YP_001539981.1| - 7.8 6.5 24.2 6.2 6.8 1.3 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF1043) Baculo_F PF12259.8 gi|159040729|ref|YP_001539981.1| - 8.5 4.8 18.3 17 3.8 0.4 2.6 1 1 1 2 2 2 0 Baculovirus F protein ArdA PF07275.11 gi|159040729|ref|YP_001539981.1| - 8.6 6.9 7.1 23 5.5 0.7 3.0 1 1 1 3 3 3 0 Antirestriction protein (ArdA) Aldo_ket_red PF00248.21 gi|159040730|ref|YP_001539982.1| - 5.4e-57 193.2 0.0 2.2e-56 191.2 0.0 1.7 1 1 0 1 1 1 1 Aldo/keto reductase family Aldo_ket_red PF00248.21 gi|159040731|ref|YP_001539983.1| - 1.5e-71 241.0 0.0 1.8e-71 240.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DNA_pol_B PF00136.21 gi|159040732|ref|YP_001539984.1| - 1.5e-54 185.4 0.0 2.4e-54 184.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|159040732|ref|YP_001539984.1| - 3.3e-29 102.1 0.0 6.6e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|159040732|ref|YP_001539984.1| - 1.5e-05 25.1 0.0 3.4e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|159040732|ref|YP_001539984.1| - 5.7e-05 22.9 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|159040732|ref|YP_001539984.1| - 0.0041 16.1 0.1 0.022 13.7 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral BPD_transp_1 PF00528.22 gi|159040733|ref|YP_001539985.1| - 5.2e-32 111.1 18.4 5.2e-32 111.1 18.4 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmB PF01978.19 gi|159040734|ref|YP_001539986.1| - 1.6e-10 40.7 0.1 2.7e-10 40.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|159040734|ref|YP_001539986.1| - 7.7e-07 28.9 0.0 1.9e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_9 PF08221.11 gi|159040734|ref|YP_001539986.1| - 4.5e-06 26.7 0.5 3.2e-05 23.9 0.1 2.3 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|159040734|ref|YP_001539986.1| - 4.5e-05 23.3 0.1 8e-05 22.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|159040734|ref|YP_001539986.1| - 0.00046 20.1 0.1 0.001 18.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|159040734|ref|YP_001539986.1| - 0.00058 19.5 0.2 0.0018 17.8 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|159040734|ref|YP_001539986.1| - 0.00079 19.2 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|159040734|ref|YP_001539986.1| - 0.0011 18.5 0.1 0.0025 17.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|159040734|ref|YP_001539986.1| - 0.0014 18.6 0.8 0.005 16.8 0.6 2.1 1 1 1 2 2 2 1 HTH domain MarR PF01047.22 gi|159040734|ref|YP_001539986.1| - 0.0018 18.1 0.2 0.0043 17.0 0.1 1.7 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|159040734|ref|YP_001539986.1| - 0.003 17.9 0.2 0.0072 16.6 0.2 1.7 1 1 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|159040734|ref|YP_001539986.1| - 0.0043 17.2 0.7 0.01 16.0 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|159040734|ref|YP_001539986.1| - 0.011 15.8 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|159040734|ref|YP_001539986.1| - 0.011 15.3 0.6 0.048 13.3 0.1 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Penicillinase_R PF03965.16 gi|159040734|ref|YP_001539986.1| - 0.021 15.2 0.3 0.038 14.3 0.3 1.5 1 1 0 1 1 1 0 Penicillinase repressor HTH_38 PF13936.6 gi|159040734|ref|YP_001539986.1| - 0.027 14.2 0.1 0.69 9.7 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|159040734|ref|YP_001539986.1| - 0.028 14.4 0.1 0.055 13.5 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PCI PF01399.27 gi|159040734|ref|YP_001539986.1| - 0.031 14.8 0.6 0.058 13.9 0.1 1.7 2 0 0 2 2 2 0 PCI domain RuvB_C PF05491.13 gi|159040734|ref|YP_001539986.1| - 0.037 13.9 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain MetOD2 PF18548.1 gi|159040734|ref|YP_001539986.1| - 0.051 13.7 0.4 0.29 11.3 0.1 2.1 2 0 0 2 2 2 0 Metanogen output domain 2 Dimerisation PF08100.11 gi|159040734|ref|YP_001539986.1| - 0.066 13.3 0.0 0.16 12.0 0.0 1.8 1 1 0 1 1 1 0 Dimerisation domain HTH_27 PF13463.6 gi|159040734|ref|YP_001539986.1| - 0.11 13.0 0.0 0.28 11.7 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain Dzip-like_N PF13815.6 gi|159040734|ref|YP_001539986.1| - 0.14 12.1 3.8 0.23 11.4 0.7 2.5 2 1 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal PfkB PF00294.24 gi|159040735|ref|YP_001539987.1| - 6.3e-40 137.3 0.1 8.4e-40 136.9 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Pyr_redox_2 PF07992.14 gi|159040735|ref|YP_001539987.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159040735|ref|YP_001539987.1| - 0.05 14.2 0.2 0.13 12.8 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|159040735|ref|YP_001539987.1| - 0.15 12.6 0.0 0.34 11.4 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain MFS_1 PF07690.16 gi|159040736|ref|YP_001539988.1| - 1e-27 97.0 49.3 5.9e-23 81.4 29.1 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily SNF PF00209.18 gi|159040737|ref|YP_001539989.1| - 0.1 11.3 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 Sodium:neurotransmitter symporter family AsnC_trans_reg2 PF17805.1 gi|159040738|ref|YP_001539990.1| - 4.4e-30 103.7 0.7 2.2e-15 56.6 0.2 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain MarR_2 PF12802.7 gi|159040738|ref|YP_001539990.1| - 0.0027 17.5 0.0 1.1 9.2 0.0 3.4 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.6 gi|159040738|ref|YP_001539990.1| - 0.003 17.5 0.0 0.096 12.7 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|159040738|ref|YP_001539990.1| - 0.0034 17.2 0.1 0.023 14.5 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|159040738|ref|YP_001539990.1| - 0.0063 16.4 0.1 9.9 6.1 0.0 3.4 4 0 0 4 4 4 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|159040738|ref|YP_001539990.1| - 0.032 13.8 0.0 8.2 6.1 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|159040738|ref|YP_001539990.1| - 0.054 13.5 0.5 0.22 11.6 0.2 2.0 2 0 0 2 2 2 0 Winged helix-turn helix RimK PF08443.11 gi|159040739|ref|YP_001539991.1| - 1.5e-32 112.7 0.0 2.1e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|159040739|ref|YP_001539991.1| - 6.9e-15 54.9 0.0 1e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|159040739|ref|YP_001539991.1| - 2.8e-07 30.7 0.1 4.8e-07 30.0 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|159040739|ref|YP_001539991.1| - 6.1e-07 29.0 0.1 0.025 13.8 0.0 3.1 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|159040739|ref|YP_001539991.1| - 7.4e-06 25.4 0.0 0.017 14.4 0.0 2.5 1 1 1 2 2 2 2 YheC/D like ATP-grasp Rimk_N PF18030.1 gi|159040739|ref|YP_001539991.1| - 3.1e-05 24.3 0.0 6.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATP-grasp_5 PF13549.6 gi|159040739|ref|YP_001539991.1| - 0.049 13.1 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain Synapsin_C PF02750.14 gi|159040739|ref|YP_001539991.1| - 0.088 12.3 0.1 0.18 11.3 0.1 1.4 1 1 0 1 1 1 0 Synapsin, ATP binding domain TrmB PF01978.19 gi|159040740|ref|YP_001539992.1| - 9e-19 67.1 0.1 2.2e-18 65.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|159040740|ref|YP_001539992.1| - 0.00023 21.2 0.0 0.001 19.1 0.0 2.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.10 gi|159040740|ref|YP_001539992.1| - 0.00058 19.6 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|159040740|ref|YP_001539992.1| - 0.0015 19.0 0.2 0.016 15.7 0.0 2.4 3 0 0 3 3 2 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.10 gi|159040740|ref|YP_001539992.1| - 0.0017 18.3 1.1 0.026 14.5 0.0 2.4 3 0 0 3 3 3 1 N-terminal phage replisome organiser (Phage_rep_org_N) Rrf2 PF02082.20 gi|159040740|ref|YP_001539992.1| - 0.0023 18.3 0.0 0.0049 17.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|159040740|ref|YP_001539992.1| - 0.0056 16.6 0.0 0.014 15.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|159040740|ref|YP_001539992.1| - 0.018 15.1 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|159040740|ref|YP_001539992.1| - 0.046 13.8 0.0 0.34 11.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.20 gi|159040740|ref|YP_001539992.1| - 0.065 13.1 0.0 0.23 11.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FUR PF01475.19 gi|159040740|ref|YP_001539992.1| - 0.072 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family FaeA PF04703.12 gi|159040740|ref|YP_001539992.1| - 0.14 12.6 0.1 0.4 11.1 0.1 1.7 1 0 0 1 1 1 0 FaeA-like protein MR_MLE_C PF13378.6 gi|159040741|ref|YP_001539993.1| - 2.8e-60 203.6 0.0 3.9e-60 203.2 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|159040741|ref|YP_001539993.1| - 2.9e-15 56.5 0.0 5.1e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TruB_N PF01509.18 gi|159040742|ref|YP_001539994.1| - 6.5e-26 91.5 0.2 2.8e-22 79.7 0.2 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|159040742|ref|YP_001539994.1| - 2.1e-22 79.0 0.1 4.2e-22 78.1 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|159040742|ref|YP_001539994.1| - 9.9e-19 67.1 0.5 2.3e-18 65.9 0.2 1.9 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|159040742|ref|YP_001539994.1| - 7.3e-16 58.0 0.1 2.1e-15 56.5 0.1 1.8 1 0 0 1 1 1 1 DKCLD (NUC011) domain DIOX_N PF14226.6 gi|159040743|ref|YP_001539995.1| - 0.15 12.8 0.0 0.23 12.2 0.0 1.3 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal ANAPC3 PF12895.7 gi|159040744|ref|YP_001539996.1| - 0.0017 18.5 1.3 0.0025 18.0 0.2 1.9 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF3271 PF11675.8 gi|159040744|ref|YP_001539996.1| - 0.0065 15.7 3.4 0.0093 15.2 3.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3271) Ribosomal_L14e PF01929.17 gi|159040745|ref|YP_001539997.1| - 7.2e-05 23.2 0.0 0.00011 22.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|159040745|ref|YP_001539997.1| - 0.031 14.2 2.7 0.031 14.2 2.7 1.9 2 0 0 2 2 2 0 KOW motif HAD_2 PF13419.6 gi|159040746|ref|YP_001539998.1| - 7.7e-11 42.4 0.0 9.9e-11 42.0 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|159040746|ref|YP_001539998.1| - 9.7e-06 26.0 0.0 1.5e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|159040746|ref|YP_001539998.1| - 1.9e-05 24.7 0.0 3.1e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like DUF1743 PF08489.11 gi|159040747|ref|YP_001539999.1| - 9.4e-26 90.2 0.0 3.5e-25 88.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.11 gi|159040747|ref|YP_001539999.1| - 0.055 13.4 0.9 0.055 13.4 0.9 1.8 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|159040747|ref|YP_001539999.1| - 0.064 13.3 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|159040747|ref|YP_001539999.1| - 0.13 11.8 1.5 0.36 10.4 1.5 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|159040747|ref|YP_001539999.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|159040747|ref|YP_001539999.1| - 0.17 11.9 2.6 0.4 10.7 2.6 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|159040747|ref|YP_001539999.1| - 0.22 10.9 3.2 0.61 9.5 3.2 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|159040747|ref|YP_001539999.1| - 0.36 10.3 6.7 4.3 6.9 6.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|159040747|ref|YP_001539999.1| - 0.54 10.4 3.4 2 8.6 3.2 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|159040747|ref|YP_001539999.1| - 1.8 8.7 4.5 2.3 8.3 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|159040747|ref|YP_001539999.1| - 2.1 8.2 6.6 6.6 6.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|159040747|ref|YP_001539999.1| - 2.1 8.0 7.9 0.73 9.5 1.1 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding MMPL PF03176.15 gi|159040748|ref|YP_001540000.1| - 2.8e-71 240.2 36.5 6.8e-43 146.9 9.9 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|159040748|ref|YP_001540000.1| - 0.34 10.7 19.6 0.11 12.4 5.2 2.8 2 0 0 2 2 2 0 Sterol-sensing domain of SREBP cleavage-activation HTH_CodY PF08222.11 gi|159040749|ref|YP_001540001.1| - 0.076 12.6 1.3 0.3 10.7 0.1 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_12 PF08461.10 gi|159040749|ref|YP_001540001.1| - 0.11 12.5 0.4 0.27 11.2 0.1 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.19 gi|159040749|ref|YP_001540001.1| - 0.15 11.8 0.1 0.25 11.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e Ribosomal_L37e PF01907.19 gi|159040751|ref|YP_001540003.1| - 3.3e-18 65.6 9.2 4.1e-18 65.3 9.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DUF2752 PF10825.8 gi|159040751|ref|YP_001540003.1| - 0.01 15.9 1.0 2.4 8.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Zn_ribbon_SprT PF17283.2 gi|159040751|ref|YP_001540003.1| - 0.032 14.1 5.2 1.5 8.8 0.6 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|159040751|ref|YP_001540003.1| - 0.073 13.1 6.2 0.4 10.7 5.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|159040751|ref|YP_001540003.1| - 0.11 12.6 0.8 0.19 11.8 0.2 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GcpE PF04551.14 gi|159040751|ref|YP_001540003.1| - 0.21 10.7 0.6 0.2 10.7 0.6 1.1 1 0 0 1 1 1 0 GcpE protein zf-ribbon_3 PF13248.6 gi|159040751|ref|YP_001540003.1| - 0.42 10.1 0.3 0.42 10.1 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|159040751|ref|YP_001540003.1| - 0.49 10.1 9.2 0.42 10.3 0.9 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.8 gi|159040751|ref|YP_001540003.1| - 1 9.3 7.5 16 5.5 0.4 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|159040751|ref|YP_001540003.1| - 1.8 8.4 7.9 15 5.5 7.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M24 PF00557.24 gi|159040752|ref|YP_001540004.1| - 1.5e-41 142.4 0.0 1.7e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Phage_Coat_B PF05356.11 gi|159040752|ref|YP_001540004.1| - 0.003 17.4 0.1 0.04 13.8 0.1 2.3 1 1 0 1 1 1 1 Phage Coat protein B gerPA PF10676.9 gi|159040752|ref|YP_001540004.1| - 0.038 14.2 0.4 0.094 13.0 0.3 1.8 2 0 0 2 2 2 0 Spore germination protein gerPA/gerPF RasGAP PF00616.19 gi|159040752|ref|YP_001540004.1| - 0.039 13.7 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase Sld7_C PF18596.1 gi|159040752|ref|YP_001540004.1| - 0.064 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Sld7 C-terminal domain tRNA-synt_1 PF00133.22 gi|159040753|ref|YP_001540005.1| - 9.5e-110 367.6 0.0 2.8e-108 362.8 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|159040753|ref|YP_001540005.1| - 7.1e-25 87.7 0.0 1.3e-24 86.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|159040753|ref|YP_001540005.1| - 5.8e-23 81.3 0.0 1.4e-13 50.4 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|159040753|ref|YP_001540005.1| - 4.2e-05 23.1 0.0 0.0063 16.0 0.0 2.7 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|159040753|ref|YP_001540005.1| - 0.0013 17.7 0.0 0.16 10.9 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (K) RNase_PH PF01138.21 gi|159040754|ref|YP_001540006.1| - 3.2e-37 128.0 0.0 4.2e-37 127.6 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|159040754|ref|YP_001540006.1| - 1.5e-17 63.4 0.0 2.9e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|159040755|ref|YP_001540007.1| - 1.2e-29 103.5 0.0 1.8e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|159040755|ref|YP_001540007.1| - 5.3e-10 39.2 0.4 1.1e-09 38.2 0.1 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 pXO2-34 PF17362.2 gi|159040755|ref|YP_001540007.1| - 0.086 12.7 0.1 0.31 10.9 0.1 2.0 2 0 0 2 2 2 0 Family of unknown function Toprim_4 PF13662.6 gi|159040756|ref|YP_001540008.1| - 1.8e-09 37.9 0.2 4.1e-09 36.8 0.2 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|159040756|ref|YP_001540008.1| - 0.00073 19.9 0.0 0.0016 18.8 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|159040756|ref|YP_001540008.1| - 0.0011 19.1 1.6 0.0029 17.8 0.1 2.4 2 1 1 3 3 3 1 Toprim domain Pex14_N PF04695.13 gi|159040756|ref|YP_001540008.1| - 0.022 15.4 12.9 0.035 14.8 12.9 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Armet PF10208.9 gi|159040756|ref|YP_001540008.1| - 0.11 12.4 0.3 0.29 11.0 0.3 1.6 1 0 0 1 1 1 0 Degradation arginine-rich protein for mis-folding DUF536 PF04394.14 gi|159040756|ref|YP_001540008.1| - 7 6.6 10.1 2.3 8.2 6.4 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF536 Cyclophil_like2 PF18050.1 gi|159040757|ref|YP_001540009.1| - 0.0058 16.6 0.0 0.0076 16.2 0.0 1.2 1 0 0 1 1 1 1 Cyclophilin-like family Glyco_hydro_57 PF03065.15 gi|159040758|ref|YP_001540010.1| - 1.3e-45 156.0 0.3 2.7e-45 155.0 0.3 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|159040758|ref|YP_001540010.1| - 0.0052 16.7 0.0 0.013 15.4 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide deacetylase Bac_rhamnosid6H PF17389.2 gi|159040759|ref|YP_001540011.1| - 4.2e-98 328.7 0.7 5.2e-98 328.4 0.7 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Bac_rhamnosid_N PF08531.10 gi|159040759|ref|YP_001540011.1| - 2.1e-52 177.4 0.0 4.1e-52 176.5 0.0 1.5 1 0 0 1 1 1 1 Alpha-L-rhamnosidase N-terminal domain Bac_rhamnosid PF05592.11 gi|159040759|ref|YP_001540011.1| - 2.8e-32 110.7 0.0 6.1e-32 109.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase concanavalin-like domain Bac_rhamnosid_C PF17390.2 gi|159040759|ref|YP_001540011.1| - 1.9e-17 62.8 0.0 4.5e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase C-terminal domain Glyco_hydro_92 PF07971.12 gi|159040759|ref|YP_001540011.1| - 0.077 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 92 Trehalase PF01204.18 gi|159040759|ref|YP_001540011.1| - 0.083 11.7 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Trehalase ADH_N PF08240.12 gi|159040760|ref|YP_001540012.1| - 1.1e-31 108.9 0.1 2.2e-31 108.0 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159040760|ref|YP_001540012.1| - 1.2e-24 86.7 0.0 1.8e-24 86.2 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|159040760|ref|YP_001540012.1| - 1.9e-05 25.7 0.0 3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|159040760|ref|YP_001540012.1| - 8.4e-05 22.8 0.1 0.00014 22.1 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain Glu_dehyd_C PF16912.5 gi|159040760|ref|YP_001540012.1| - 0.00017 21.1 0.1 0.00024 20.7 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Methyltransf_25 PF13649.6 gi|159040760|ref|YP_001540012.1| - 0.00062 20.4 0.0 0.014 16.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain ThiF PF00899.21 gi|159040760|ref|YP_001540012.1| - 0.0016 17.8 2.5 0.025 13.9 1.1 2.2 1 1 0 2 2 2 1 ThiF family AlaDh_PNT_C PF01262.21 gi|159040760|ref|YP_001540012.1| - 0.0022 17.4 0.1 0.0031 16.8 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|159040760|ref|YP_001540012.1| - 0.0036 17.5 0.0 0.0054 17.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ADH_N_assoc PF13823.6 gi|159040760|ref|YP_001540012.1| - 0.011 15.6 0.2 0.021 14.7 0.2 1.5 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-associated Methyltransf_11 PF08241.12 gi|159040760|ref|YP_001540012.1| - 0.013 16.2 0.0 0.1 13.3 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Shikimate_DH PF01488.20 gi|159040760|ref|YP_001540012.1| - 0.016 15.3 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|159040760|ref|YP_001540012.1| - 0.039 13.2 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain MR_MLE_C PF13378.6 gi|159040761|ref|YP_001540013.1| - 6.9e-45 153.3 0.0 9.3e-45 152.9 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|159040761|ref|YP_001540013.1| - 5.2e-15 55.7 0.0 9.2e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FbpA PF05833.11 gi|159040762|ref|YP_001540014.1| - 9.3e-27 93.9 0.0 1.5e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|159040762|ref|YP_001540014.1| - 1e-25 90.5 0.0 2.5e-25 89.2 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|159040762|ref|YP_001540014.1| - 0.00024 21.3 0.0 0.00075 19.7 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain ZapB PF06005.12 gi|159040762|ref|YP_001540014.1| - 0.008 16.6 4.6 0.032 14.7 0.6 2.5 2 0 0 2 2 2 1 Cell division protein ZapB CLZ PF16526.5 gi|159040762|ref|YP_001540014.1| - 0.0098 16.2 3.6 4.5 7.7 1.1 2.9 3 0 0 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SlyX PF04102.12 gi|159040762|ref|YP_001540014.1| - 0.012 16.2 2.0 0.12 13.0 0.1 2.4 2 0 0 2 2 2 0 SlyX GrpE PF01025.19 gi|159040762|ref|YP_001540014.1| - 0.019 14.6 4.7 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 GrpE Jnk-SapK_ap_N PF09744.9 gi|159040762|ref|YP_001540014.1| - 0.027 14.7 3.4 2.8 8.2 0.6 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF16 PF01519.16 gi|159040762|ref|YP_001540014.1| - 0.031 14.7 1.1 2.5 8.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|159040762|ref|YP_001540014.1| - 0.032 14.5 2.6 1.7 9.0 0.1 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin_1 PF12718.7 gi|159040762|ref|YP_001540014.1| - 0.042 14.0 3.0 0.84 9.8 0.5 2.2 2 0 0 2 2 2 0 Tropomyosin like Biotin_lipoyl_2 PF13533.6 gi|159040762|ref|YP_001540014.1| - 0.043 13.7 0.2 0.61 10.0 0.3 2.5 2 0 0 2 2 2 0 Biotin-lipoyl like MCU PF04678.13 gi|159040762|ref|YP_001540014.1| - 0.046 13.8 0.0 0.75 9.9 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial calcium uniporter Prefoldin_2 PF01920.20 gi|159040762|ref|YP_001540014.1| - 0.048 13.6 3.4 4.7 7.2 1.4 2.4 2 0 0 2 2 2 0 Prefoldin subunit Seryl_tRNA_N PF02403.22 gi|159040762|ref|YP_001540014.1| - 0.058 13.6 4.2 0.37 11.1 0.8 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4140 PF13600.6 gi|159040762|ref|YP_001540014.1| - 0.059 13.8 2.4 6.1 7.4 0.3 2.7 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) XhlA PF10779.9 gi|159040762|ref|YP_001540014.1| - 0.078 13.2 2.9 11 6.3 0.8 2.6 2 0 0 2 2 2 0 Haemolysin XhlA Lebercilin PF15619.6 gi|159040762|ref|YP_001540014.1| - 0.078 12.6 4.6 2.3 7.8 0.1 2.2 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Paralemmin PF03285.15 gi|159040762|ref|YP_001540014.1| - 0.082 12.5 0.2 0.082 12.5 0.2 1.7 2 0 0 2 2 2 0 Paralemmin Laminin_II PF06009.12 gi|159040762|ref|YP_001540014.1| - 0.09 12.8 0.9 6.3 6.8 0.2 2.4 2 0 0 2 2 2 0 Laminin Domain II YkyA PF10368.9 gi|159040762|ref|YP_001540014.1| - 0.12 12.1 4.0 0.25 11.0 0.2 2.2 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein Prefoldin PF02996.17 gi|159040762|ref|YP_001540014.1| - 0.15 12.0 3.0 1.6 8.6 0.8 2.4 2 0 0 2 2 2 0 Prefoldin subunit Spc24 PF08286.11 gi|159040762|ref|YP_001540014.1| - 0.16 12.3 1.0 2.4 8.4 0.4 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 GCN5L1 PF06320.13 gi|159040762|ref|YP_001540014.1| - 0.22 11.7 0.9 3.5 7.8 0.4 2.3 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) MerR-DNA-bind PF09278.11 gi|159040762|ref|YP_001540014.1| - 0.22 12.1 0.7 2.2 8.9 0.0 2.3 2 0 0 2 2 2 0 MerR, DNA binding Uso1_p115_C PF04871.13 gi|159040762|ref|YP_001540014.1| - 0.23 11.9 4.5 1.7 9.0 1.8 2.3 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region PspA_IM30 PF04012.12 gi|159040762|ref|YP_001540014.1| - 0.29 10.7 6.1 0.41 10.2 2.8 2.1 2 0 0 2 2 2 0 PspA/IM30 family Apolipoprotein PF01442.18 gi|159040762|ref|YP_001540014.1| - 0.31 10.9 4.5 1.3 8.9 1.3 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Spc7 PF08317.11 gi|159040762|ref|YP_001540014.1| - 0.34 9.8 4.7 2.4 6.9 0.8 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein TMF_DNA_bd PF12329.8 gi|159040762|ref|YP_001540014.1| - 0.37 10.8 6.4 1.6 8.8 1.8 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding COG2 PF06148.11 gi|159040762|ref|YP_001540014.1| - 0.38 10.8 2.4 17 5.5 0.1 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIC PF04977.15 gi|159040762|ref|YP_001540014.1| - 0.42 10.4 3.6 6.1 6.7 0.8 2.4 2 0 0 2 2 2 0 Septum formation initiator AAA_13 PF13166.6 gi|159040762|ref|YP_001540014.1| - 0.44 9.1 4.0 3.6 6.1 1.0 2.0 2 0 0 2 2 2 0 AAA domain BST2 PF16716.5 gi|159040762|ref|YP_001540014.1| - 0.51 11.0 2.1 36 5.0 1.3 2.3 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 GAS PF13851.6 gi|159040762|ref|YP_001540014.1| - 0.6 9.4 3.2 9.8 5.5 0.1 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding FlaC_arch PF05377.11 gi|159040762|ref|YP_001540014.1| - 0.91 10.0 4.3 14 6.1 0.2 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4337 PF14235.6 gi|159040762|ref|YP_001540014.1| - 0.98 9.5 4.1 6.1 6.9 1.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) TPR_MLP1_2 PF07926.12 gi|159040762|ref|YP_001540014.1| - 1.1 9.3 6.3 3.2 7.8 2.6 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein APG6_N PF17675.1 gi|159040762|ref|YP_001540014.1| - 1.1 9.7 8.8 7.8 7.0 3.0 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region DHR10 PF18595.1 gi|159040762|ref|YP_001540014.1| - 1.4 9.0 7.3 9 6.4 0.2 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Macoilin PF09726.9 gi|159040762|ref|YP_001540014.1| - 2.4 6.6 4.3 1.5 7.3 1.0 1.8 1 1 1 2 2 2 0 Macoilin family Sipho_Gp157 PF05565.11 gi|159040762|ref|YP_001540014.1| - 3.1 7.8 6.2 2 8.4 1.3 2.3 2 0 0 2 2 2 0 Siphovirus Gp157 CCDC-167 PF15188.6 gi|159040762|ref|YP_001540014.1| - 4.3 7.7 5.5 18 5.7 0.6 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 ABC_tran_CTD PF16326.5 gi|159040762|ref|YP_001540014.1| - 5.1 7.4 9.3 1.4 9.2 0.6 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain ATG16 PF08614.11 gi|159040762|ref|YP_001540014.1| - 5.4 7.2 7.2 11 6.2 2.7 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Voltage_CLC PF00654.20 gi|159040763|ref|YP_001540015.1| - 2.5e-91 306.6 37.8 2.4e-90 303.4 29.0 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|159040763|ref|YP_001540015.1| - 9.4e-15 54.8 0.1 2.9e-06 27.6 0.0 2.5 2 0 0 2 2 2 2 CBS domain GAF PF01590.26 gi|159040763|ref|YP_001540015.1| - 0.17 12.5 0.0 17 6.0 0.0 2.3 1 1 1 2 2 2 0 GAF domain Tail_VII PF17091.5 gi|159040763|ref|YP_001540015.1| - 2.7 7.9 5.0 1.4 8.9 1.2 2.5 2 0 0 2 2 2 0 Inovirus G7P protein ATPase_2 PF01637.18 gi|159040764|ref|YP_001540016.1| - 1.6e-14 54.4 0.9 3.2e-14 53.4 0.9 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|159040764|ref|YP_001540016.1| - 7.6e-08 32.5 0.3 0.008 16.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|159040764|ref|YP_001540016.1| - 7.6e-06 26.4 0.0 1.6e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_35 PF14516.6 gi|159040764|ref|YP_001540016.1| - 2.7e-05 23.2 0.1 0.036 12.9 0.0 2.4 2 1 0 2 2 2 2 AAA-like domain TRADD_N PF09034.10 gi|159040764|ref|YP_001540016.1| - 0.022 14.8 0.0 0.058 13.4 0.0 1.7 1 0 0 1 1 1 0 TRADD, N-terminal domain MMR_HSR1 PF01926.23 gi|159040764|ref|YP_001540016.1| - 0.15 12.2 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|159040765|ref|YP_001540017.1| - 0.00034 21.0 0.5 0.024 15.0 0.0 3.5 3 1 1 4 4 4 1 AAA ATPase domain DUF2791 PF10923.8 gi|159040765|ref|YP_001540017.1| - 0.00039 19.4 0.1 0.096 11.5 0.0 3.2 3 0 0 3 3 3 1 P-loop Domain of unknown function (DUF2791) AAA PF00004.29 gi|159040765|ref|YP_001540017.1| - 0.002 18.6 0.2 0.0077 16.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IF2_N PF04760.15 gi|159040765|ref|YP_001540017.1| - 0.017 14.9 0.1 22 4.9 0.0 3.9 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DUF815 PF05673.13 gi|159040765|ref|YP_001540017.1| - 0.022 13.9 0.0 0.11 11.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF883 PF05957.13 gi|159040765|ref|YP_001540017.1| - 0.029 15.0 1.2 17 6.1 0.0 3.9 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Syntaxin_2 PF14523.6 gi|159040765|ref|YP_001540017.1| - 0.075 13.4 3.9 0.17 12.2 1.6 3.0 2 0 0 2 2 1 0 Syntaxin-like protein ATPase_2 PF01637.18 gi|159040765|ref|YP_001540017.1| - 0.15 12.0 4.0 0.17 11.8 0.0 2.9 3 1 0 3 3 3 0 ATPase domain predominantly from Archaea Vps53_N PF04100.12 gi|159040765|ref|YP_001540017.1| - 0.27 10.2 5.3 0.2 10.6 2.3 2.2 2 1 1 3 3 3 0 Vps53-like, N-terminal Phasin PF05597.11 gi|159040765|ref|YP_001540017.1| - 0.46 10.5 5.6 12 5.9 0.9 3.7 3 0 0 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF2205 PF10224.9 gi|159040765|ref|YP_001540017.1| - 0.73 9.9 4.8 1.9 8.6 2.2 3.1 2 1 1 3 3 2 0 Short coiled-coil protein YtxH PF12732.7 gi|159040765|ref|YP_001540017.1| - 0.81 10.3 3.3 5.5 7.6 0.3 3.2 3 0 0 3 3 3 0 YtxH-like protein ApoLp-III PF07464.11 gi|159040765|ref|YP_001540017.1| - 0.91 9.6 10.8 7.2 6.7 2.5 3.8 2 1 2 4 4 4 0 Apolipophorin-III precursor (apoLp-III) Calpain_inhib PF00748.19 gi|159040765|ref|YP_001540017.1| - 0.95 10.0 2.6 7.3 7.1 0.1 2.3 2 0 0 2 2 2 0 Calpain inhibitor Baculo_PEP_C PF04513.12 gi|159040765|ref|YP_001540017.1| - 2.3 8.2 25.8 0.71 9.9 10.6 4.2 3 1 1 4 4 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5082 PF16888.5 gi|159040765|ref|YP_001540017.1| - 4 7.7 14.1 19 5.6 0.3 4.2 2 1 0 3 3 3 0 Domain of unknown function (DUF5082) GAT PF03127.14 gi|159040765|ref|YP_001540017.1| - 5.5 7.4 11.1 0.55 10.6 2.0 3.7 3 0 0 3 3 3 0 GAT domain HALZ PF02183.18 gi|159040765|ref|YP_001540017.1| - 5.8 7.2 7.2 1.2 9.4 0.9 3.0 3 0 0 3 3 3 0 Homeobox associated leucine zipper DUF2959 PF11172.8 gi|159040765|ref|YP_001540017.1| - 7.8 6.6 7.7 7.5 6.6 0.5 3.5 4 0 0 4 4 3 0 Protein of unknown function (DUF2959) SpoVIF PF14069.6 gi|159040766|ref|YP_001540018.1| - 0.036 13.8 0.1 0.62 9.9 0.1 2.2 2 0 0 2 2 2 0 Stage VI sporulation protein F NurA PF09376.10 gi|159040767|ref|YP_001540019.1| - 2.4e-08 34.0 0.2 4.9e-08 33.0 0.2 1.5 1 1 0 1 1 1 1 NurA domain Corona_S1 PF01600.16 gi|159040767|ref|YP_001540019.1| - 0.0037 16.1 0.0 0.0047 15.8 0.0 1.1 1 0 0 1 1 1 1 Coronavirus S1 glycoprotein TrmB PF01978.19 gi|159040768|ref|YP_001540020.1| - 1.7e-08 34.2 0.3 2.7e-08 33.6 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|159040768|ref|YP_001540020.1| - 4.4e-06 26.5 0.0 6.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|159040768|ref|YP_001540020.1| - 0.00033 20.4 0.0 0.00075 19.2 0.0 1.5 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|159040768|ref|YP_001540020.1| - 0.0007 19.5 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|159040768|ref|YP_001540020.1| - 0.0021 18.5 0.0 0.0037 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|159040768|ref|YP_001540020.1| - 0.0022 18.2 0.0 0.0043 17.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_micro PF17007.5 gi|159040768|ref|YP_001540020.1| - 0.0023 16.9 0.3 0.0026 16.6 0.3 1.1 1 0 0 1 1 1 1 HTH-like hSH3 PF14603.6 gi|159040768|ref|YP_001540020.1| - 0.003 18.0 0.2 0.0049 17.3 0.2 1.3 1 0 0 1 1 1 1 Helically-extended SH3 domain HTH_24 PF13412.6 gi|159040768|ref|YP_001540020.1| - 0.0052 16.3 0.3 0.015 14.9 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|159040768|ref|YP_001540020.1| - 0.0054 17.0 0.1 0.0081 16.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|159040768|ref|YP_001540020.1| - 0.0075 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TFIIE_alpha PF02002.17 gi|159040768|ref|YP_001540020.1| - 0.014 15.2 0.4 0.027 14.3 0.4 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_38 PF13936.6 gi|159040768|ref|YP_001540020.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|159040768|ref|YP_001540020.1| - 0.02 15.2 0.1 0.029 14.7 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|159040768|ref|YP_001540020.1| - 0.027 14.4 0.1 0.053 13.5 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.7 gi|159040768|ref|YP_001540020.1| - 0.045 13.8 0.0 0.072 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|159040768|ref|YP_001540020.1| - 0.048 13.8 0.1 0.11 12.7 0.1 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) CENP-B_N PF04218.13 gi|159040768|ref|YP_001540020.1| - 0.068 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Mga PF05043.13 gi|159040768|ref|YP_001540020.1| - 0.071 13.7 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_5 PF01022.20 gi|159040768|ref|YP_001540020.1| - 0.11 12.4 0.1 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family AhpC-TSA PF00578.21 gi|159040770|ref|YP_001540022.1| - 4.8e-35 120.2 0.0 5.7e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|159040770|ref|YP_001540022.1| - 5.8e-24 84.5 0.0 6.8e-24 84.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|159040770|ref|YP_001540022.1| - 0.00032 20.8 0.0 0.0065 16.6 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|159040770|ref|YP_001540022.1| - 0.0038 16.8 0.0 0.0049 16.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.6 gi|159040770|ref|YP_001540022.1| - 0.01 16.2 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like SCO1-SenC PF02630.14 gi|159040770|ref|YP_001540022.1| - 0.085 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Pterin_bind PF00809.22 gi|159040771|ref|YP_001540023.1| - 9.7e-41 140.0 0.0 4.7e-39 134.5 0.0 2.1 1 1 0 1 1 1 1 Pterin binding enzyme RNA_pol_Rpb1_1 PF04997.12 gi|159040772|ref|YP_001540024.1| - 7.5e-89 298.1 0.0 1.2e-88 297.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|159040772|ref|YP_001540024.1| - 8.2e-72 240.8 0.0 1.4e-71 240.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|159040772|ref|YP_001540024.1| - 6.8e-32 110.6 0.0 1.2e-31 109.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|159040772|ref|YP_001540024.1| - 7e-28 96.7 0.0 1.5e-27 95.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|159040772|ref|YP_001540024.1| - 3.1e-26 92.4 0.1 6.1e-26 91.4 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|159040772|ref|YP_001540024.1| - 0.003 17.7 3.4 1.3 9.2 0.2 3.6 3 0 0 3 3 3 1 C4-type zinc ribbon domain Peptidase_M10_C PF08548.11 gi|159040772|ref|YP_001540024.1| - 0.026 14.4 0.1 0.054 13.4 0.1 1.4 1 0 0 1 1 1 0 Peptidase M10 serralysin C terminal FbpA PF05833.11 gi|159040772|ref|YP_001540024.1| - 0.026 13.3 0.5 0.042 12.6 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DZR PF12773.7 gi|159040772|ref|YP_001540024.1| - 0.04 14.0 1.5 2.5 8.2 0.2 2.4 2 0 0 2 2 2 0 Double zinc ribbon MqsA_antitoxin PF15731.5 gi|159040772|ref|YP_001540024.1| - 0.046 13.8 0.1 0.13 12.4 0.0 1.8 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Zn-ribbon_8 PF09723.10 gi|159040772|ref|YP_001540024.1| - 0.053 13.6 6.7 6.9 6.9 0.1 3.5 3 0 0 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|159040772|ref|YP_001540024.1| - 0.12 12.4 0.7 4.2 7.4 0.1 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|159040772|ref|YP_001540024.1| - 0.37 10.3 9.1 2.5 7.6 0.7 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|159040772|ref|YP_001540024.1| - 0.59 10.1 4.1 30 4.6 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|159040772|ref|YP_001540024.1| - 2.2 8.8 8.3 14 6.2 0.1 3.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.6 gi|159040772|ref|YP_001540024.1| - 3.5 7.6 5.4 35 4.4 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|159040772|ref|YP_001540024.1| - 6.7 7.5 14.0 1 10.1 0.5 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_pol_Rpb1_5 PF04998.17 gi|159040773|ref|YP_001540025.1| - 2.1e-53 181.5 0.6 3.4e-53 180.8 0.6 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Gpr1_Fun34_YaaH PF01184.19 gi|159040774|ref|YP_001540026.1| - 7.5e-27 94.3 21.3 9.3e-27 94.0 21.3 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family MarR PF01047.22 gi|159040775|ref|YP_001540027.1| - 0.0001 22.1 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|159040775|ref|YP_001540027.1| - 0.0012 19.0 0.1 0.0015 18.7 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|159040775|ref|YP_001540027.1| - 0.0017 18.2 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|159040775|ref|YP_001540027.1| - 0.0039 17.1 0.1 0.0044 16.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|159040775|ref|YP_001540027.1| - 0.0076 16.1 0.3 0.013 15.3 0.3 1.5 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|159040775|ref|YP_001540027.1| - 0.01 15.3 0.1 0.016 14.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_15 PF12324.8 gi|159040775|ref|YP_001540027.1| - 0.015 15.2 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HemN_C PF06969.16 gi|159040775|ref|YP_001540027.1| - 0.028 14.5 0.0 0.049 13.7 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain Rrf2 PF02082.20 gi|159040775|ref|YP_001540027.1| - 0.033 14.5 0.2 0.045 14.1 0.2 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|159040775|ref|YP_001540027.1| - 0.033 14.2 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|159040775|ref|YP_001540027.1| - 0.033 14.2 0.0 0.037 14.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix GntR PF00392.21 gi|159040775|ref|YP_001540027.1| - 0.041 13.5 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|159040775|ref|YP_001540027.1| - 0.077 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|159040775|ref|YP_001540027.1| - 0.092 12.7 0.0 0.18 11.8 0.0 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain AA_permease_2 PF13520.6 gi|159040776|ref|YP_001540028.1| - 1.5e-13 50.4 58.8 2.3e-13 49.8 58.8 1.2 1 0 0 1 1 1 1 Amino acid permease Aminotran_5 PF00266.19 gi|159040777|ref|YP_001540029.1| - 1e-26 93.8 0.0 1.4e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|159040777|ref|YP_001540029.1| - 0.003 16.2 0.0 0.0045 15.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M48 PF01435.18 gi|159040779|ref|YP_001540031.1| - 6.8e-20 71.7 0.0 1.2e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|159040779|ref|YP_001540031.1| - 0.0055 15.9 5.4 0.033 13.4 5.5 2.2 1 1 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|159040779|ref|YP_001540031.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 SprT-like family LepB_GAP_N PF18172.1 gi|159040782|ref|YP_001540034.1| - 0.049 13.5 0.1 0.066 13.1 0.1 1.2 1 0 0 1 1 1 0 LepB GAP domain N-terminal subdomain H_PPase PF03030.16 gi|159040783|ref|YP_001540035.1| - 6.7e-220 732.1 35.3 7.7e-220 731.9 35.3 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Enolase_C PF00113.22 gi|159040784|ref|YP_001540036.1| - 3e-62 210.6 0.0 3.5e-62 210.3 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|159040784|ref|YP_001540036.1| - 2e-26 92.7 0.0 3.5e-26 91.9 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|159040784|ref|YP_001540036.1| - 2.8e-10 40.1 0.0 4.5e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like SBDS PF01172.18 gi|159040785|ref|YP_001540037.1| - 3e-20 72.1 0.0 5.1e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|159040785|ref|YP_001540037.1| - 8.4e-19 67.7 0.1 1.2e-18 67.2 0.1 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.11 gi|159040785|ref|YP_001540037.1| - 0.0051 16.6 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|159040785|ref|YP_001540037.1| - 0.007 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Elongation factor G C-terminus eIF-6 PF01912.18 gi|159040786|ref|YP_001540038.1| - 5.2e-64 215.3 0.8 6.1e-64 215.0 0.8 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_S27e PF01667.17 gi|159040787|ref|YP_001540039.1| - 3.9e-20 71.3 0.3 4.3e-20 71.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|159040787|ref|YP_001540039.1| - 1.5e-05 24.4 0.6 2.2e-05 23.9 0.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|159040787|ref|YP_001540039.1| - 0.0037 16.6 0.4 0.52 9.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|159040787|ref|YP_001540039.1| - 0.01 15.7 0.5 4.5 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|159040787|ref|YP_001540039.1| - 0.016 15.2 0.1 0.019 15.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|159040787|ref|YP_001540039.1| - 0.025 14.5 0.1 3.5 7.6 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.18 gi|159040787|ref|YP_001540039.1| - 0.072 12.9 0.5 6.2 6.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|159040787|ref|YP_001540039.1| - 0.079 12.6 0.4 0.097 12.3 0.4 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-RanBP PF00641.18 gi|159040787|ref|YP_001540039.1| - 0.23 10.8 2.6 3.2 7.2 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-DNL PF05180.12 gi|159040787|ref|YP_001540039.1| - 0.24 11.4 0.5 0.24 11.4 0.5 1.8 1 1 1 2 2 2 0 DNL zinc finger Rubredoxin_2 PF18073.1 gi|159040787|ref|YP_001540039.1| - 0.27 11.0 2.4 0.97 9.2 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain ZZ PF00569.17 gi|159040787|ref|YP_001540039.1| - 0.36 10.7 2.6 0.9 9.4 2.6 1.6 1 1 0 1 1 1 0 Zinc finger, ZZ type Desulfoferrod_N PF06397.12 gi|159040787|ref|YP_001540039.1| - 1.2 8.8 10.8 2.4 7.8 0.8 2.8 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain Ribosomal_L31e PF01198.19 gi|159040788|ref|YP_001540040.1| - 2.7e-10 40.3 0.4 3.3e-10 40.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e MinE PF03776.14 gi|159040788|ref|YP_001540040.1| - 0.024 14.6 0.1 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Septum formation topological specificity factor MinE Ribosomal_L39 PF00832.20 gi|159040789|ref|YP_001540041.1| - 7.1e-21 73.6 8.1 8e-21 73.4 8.1 1.0 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.20 gi|159040790|ref|YP_001540042.1| - 2.9e-24 85.5 10.5 3.7e-24 85.1 10.5 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|159040790|ref|YP_001540042.1| - 0.068 12.4 10.3 0.085 12.1 10.3 1.0 1 0 0 1 1 1 0 Radial spoke protein 3 BAH PF01426.18 gi|159040790|ref|YP_001540042.1| - 0.2 11.5 1.3 0.22 11.4 1.3 1.2 1 1 0 1 1 1 0 BAH domain Selenoprotein_S PF06936.11 gi|159040790|ref|YP_001540042.1| - 0.97 9.2 8.0 1.3 8.8 8.0 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) ELFV_dehydrog PF00208.21 gi|159040791|ref|YP_001540043.1| - 2.1e-69 234.0 1.6 2.7e-69 233.6 1.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|159040791|ref|YP_001540043.1| - 1.7e-48 163.7 0.0 3.3e-48 162.9 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|159040791|ref|YP_001540043.1| - 0.00082 18.8 0.2 0.0015 17.9 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|159040791|ref|YP_001540043.1| - 0.056 10.9 0.0 0.079 10.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase PALP PF00291.25 gi|159040791|ref|YP_001540043.1| - 0.067 12.6 0.5 0.1 12.0 0.5 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme AlaDh_PNT_C PF01262.21 gi|159040791|ref|YP_001540043.1| - 0.079 12.2 0.5 0.17 11.1 0.5 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AA_permease_2 PF13520.6 gi|159040792|ref|YP_001540044.1| - 3.6e-18 65.6 64.7 4.5e-18 65.3 64.7 1.1 1 0 0 1 1 1 1 Amino acid permease Peptidase_M42 PF05343.14 gi|159040793|ref|YP_001540045.1| - 3.3e-87 292.2 0.0 3.9e-87 292.0 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|159040793|ref|YP_001540045.1| - 9.6e-07 28.7 0.0 0.00027 20.7 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|159040793|ref|YP_001540045.1| - 0.00011 22.0 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|159040793|ref|YP_001540045.1| - 0.032 13.0 0.2 0.053 12.3 0.2 1.4 1 0 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) GD_AH_C PF04295.13 gi|159040794|ref|YP_001540046.1| - 2.9e-153 510.3 2.5 3.2e-153 510.2 2.5 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 gi|159040795|ref|YP_001540047.1| - 2e-18 66.7 0.4 6.2e-18 65.2 0.4 1.7 1 1 0 1 1 1 1 SAF domain SET PF00856.28 gi|159040795|ref|YP_001540047.1| - 0.19 12.1 0.0 0.88 9.9 0.0 1.9 1 1 0 1 1 1 0 SET domain NAD_binding_2 PF03446.15 gi|159040796|ref|YP_001540048.1| - 6.8e-50 169.3 0.1 1.4e-49 168.3 0.0 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|159040796|ref|YP_001540048.1| - 2.4e-31 108.5 0.1 3.3e-31 108.1 0.1 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|159040796|ref|YP_001540048.1| - 7.1e-07 28.8 0.0 1.2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|159040796|ref|YP_001540048.1| - 4.8e-06 27.1 0.1 2.1e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|159040796|ref|YP_001540048.1| - 0.00081 19.0 0.0 0.0025 17.4 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|159040796|ref|YP_001540048.1| - 0.0018 18.4 0.0 0.0054 16.8 0.0 1.9 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|159040796|ref|YP_001540048.1| - 0.0041 17.0 0.0 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|159040796|ref|YP_001540048.1| - 0.06 13.0 0.0 0.49 10.0 0.0 2.2 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA OCD_Mu_crystall PF02423.15 gi|159040796|ref|YP_001540048.1| - 0.07 12.1 0.0 0.24 10.3 0.0 1.8 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family UDPG_MGDP_dh PF00984.19 gi|159040796|ref|YP_001540048.1| - 0.073 13.3 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain RE_SinI PF09570.10 gi|159040796|ref|YP_001540048.1| - 0.22 10.7 0.0 0.37 10.0 0.0 1.3 1 0 0 1 1 1 0 SinI restriction endonuclease ATP-synt_D PF01813.17 gi|159040797|ref|YP_001540049.1| - 7e-33 114.1 0.6 7.9e-33 114.0 0.6 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF2894 PF11445.8 gi|159040797|ref|YP_001540049.1| - 0.088 13.3 0.0 0.093 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) Pyr_redox_2 PF07992.14 gi|159040798|ref|YP_001540050.1| - 8.8e-46 156.5 0.2 1.1e-45 156.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|159040798|ref|YP_001540050.1| - 7.8e-30 104.2 2.6 1.6e-23 83.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159040798|ref|YP_001540050.1| - 8.9e-17 61.4 1.9 3.6e-12 46.7 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|159040798|ref|YP_001540050.1| - 1.1e-09 37.9 9.3 0.0001 21.5 2.0 4.0 4 0 0 4 4 4 3 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|159040798|ref|YP_001540050.1| - 5.4e-07 29.3 2.5 3.1e-06 26.8 0.2 2.7 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|159040798|ref|YP_001540050.1| - 7.5e-07 28.6 6.7 3.8e-05 22.9 2.0 3.3 4 0 0 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.19 gi|159040798|ref|YP_001540050.1| - 1.2e-06 28.0 2.4 0.0026 17.1 1.4 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|159040798|ref|YP_001540050.1| - 2.1e-06 26.7 4.0 0.002 16.9 1.6 3.8 4 0 0 4 4 4 1 HI0933-like protein Thi4 PF01946.17 gi|159040798|ref|YP_001540050.1| - 5.9e-06 25.7 1.1 0.00024 20.4 0.3 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|159040798|ref|YP_001540050.1| - 5.6e-05 23.5 0.4 0.1 13.0 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|159040798|ref|YP_001540050.1| - 5.6e-05 23.3 2.4 0.0042 17.3 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|159040798|ref|YP_001540050.1| - 0.00018 21.2 8.9 0.00072 19.2 3.5 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|159040798|ref|YP_001540050.1| - 0.00029 20.1 0.2 0.021 14.0 0.0 2.4 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|159040798|ref|YP_001540050.1| - 0.0027 17.7 1.3 1.6 8.7 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|159040798|ref|YP_001540050.1| - 0.007 15.7 0.5 0.039 13.2 0.7 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|159040798|ref|YP_001540050.1| - 0.019 14.0 2.3 0.067 12.2 0.4 2.3 2 1 1 3 3 3 0 Lycopene cyclase protein LAL_C2 PF18603.1 gi|159040798|ref|YP_001540050.1| - 0.11 12.7 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 DUF697 PF05128.12 gi|159040798|ref|YP_001540050.1| - 0.43 10.3 2.7 3 7.5 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF697) Trp_halogenase PF04820.14 gi|159040798|ref|YP_001540050.1| - 1.6 7.5 5.2 2.3 7.0 2.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase AsnC_trans_reg PF01037.21 gi|159040799|ref|YP_001540051.1| - 2.3e-11 43.5 0.2 2.5e-11 43.4 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|159040799|ref|YP_001540051.1| - 6.7e-05 22.9 0.2 8.6e-05 22.5 0.2 1.1 1 0 0 1 1 1 1 NapD protein CutA1 PF03091.15 gi|159040799|ref|YP_001540051.1| - 0.063 13.1 0.1 4.6 7.2 0.0 2.0 1 1 1 2 2 2 0 CutA1 divalent ion tolerance protein T2SSB PF16537.5 gi|159040800|ref|YP_001540052.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system protein B Sod_Fe_N PF00081.22 gi|159040801|ref|YP_001540053.1| - 8.3e-29 99.9 0.6 8.3e-29 99.9 0.6 2.2 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|159040801|ref|YP_001540053.1| - 3e-28 98.0 0.2 4.7e-28 97.3 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Thioredoxin_6 PF13848.6 gi|159040801|ref|YP_001540053.1| - 0.0039 17.1 0.0 0.0063 16.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain AsnC_trans_reg PF01037.21 gi|159040802|ref|YP_001540054.1| - 5e-09 36.0 0.1 9.7e-09 35.1 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_5 PF01022.20 gi|159040802|ref|YP_001540054.1| - 1.1e-07 31.5 0.1 9.5e-07 28.6 0.1 2.3 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|159040802|ref|YP_001540054.1| - 2.9e-07 30.3 1.2 4.3e-07 29.8 0.1 1.8 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|159040802|ref|YP_001540054.1| - 9.4e-07 28.6 0.1 2e-06 27.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|159040802|ref|YP_001540054.1| - 1.8e-06 27.9 0.1 5.3e-06 26.4 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|159040802|ref|YP_001540054.1| - 1.6e-05 24.4 0.2 0.00037 20.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|159040802|ref|YP_001540054.1| - 0.00026 20.9 1.2 0.0048 16.8 1.0 2.6 1 1 0 1 1 1 1 HTH domain RP-C PF03428.13 gi|159040802|ref|YP_001540054.1| - 0.00045 19.9 0.1 0.00093 18.9 0.1 1.5 1 1 0 1 1 1 1 Replication protein C N-terminal domain LexA_DNA_bind PF01726.16 gi|159040802|ref|YP_001540054.1| - 0.0019 17.9 2.2 0.013 15.3 2.2 2.1 1 1 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|159040802|ref|YP_001540054.1| - 0.0027 17.6 0.1 0.0055 16.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_8 PF02954.19 gi|159040802|ref|YP_001540054.1| - 0.003 17.3 0.6 0.046 13.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_36 PF13730.6 gi|159040802|ref|YP_001540054.1| - 0.0085 16.0 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|159040802|ref|YP_001540054.1| - 0.012 15.8 0.0 0.021 15.0 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|159040802|ref|YP_001540054.1| - 0.015 15.0 0.2 0.044 13.5 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|159040802|ref|YP_001540054.1| - 0.027 14.3 1.0 1.3 8.8 0.0 2.6 2 0 0 2 2 2 0 HTH DNA binding domain HTH_28 PF13518.6 gi|159040802|ref|YP_001540054.1| - 0.038 14.1 0.0 0.089 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain UDPG_MGDP_dh_C PF03720.15 gi|159040802|ref|YP_001540054.1| - 0.043 14.2 0.1 0.18 12.2 0.0 2.0 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Rrf2 PF02082.20 gi|159040802|ref|YP_001540054.1| - 0.054 13.8 0.3 2.2 8.7 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.19 gi|159040802|ref|YP_001540054.1| - 0.066 13.1 0.3 1.2 9.1 0.0 2.7 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB KorB PF08535.10 gi|159040802|ref|YP_001540054.1| - 0.092 12.8 0.2 4.4 7.4 0.0 2.5 2 1 0 2 2 2 0 KorB domain GerE PF00196.19 gi|159040802|ref|YP_001540054.1| - 0.13 11.8 1.2 11 5.7 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family RecO_C PF02565.15 gi|159040802|ref|YP_001540054.1| - 0.14 12.0 0.1 0.24 11.2 0.1 1.3 1 0 0 1 1 1 0 Recombination protein O C terminal ATP-synt_ab PF00006.25 gi|159040804|ref|YP_001540056.1| - 1.4e-78 263.4 0.0 1.9e-78 263.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|159040804|ref|YP_001540056.1| - 4.2e-40 136.4 0.0 6.8e-40 135.7 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|159040804|ref|YP_001540056.1| - 7.3e-12 45.6 1.2 1.6e-11 44.6 1.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_11 PF13086.6 gi|159040804|ref|YP_001540056.1| - 0.22 11.3 0.0 0.36 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain vATP-synt_E PF01991.18 gi|159040805|ref|YP_001540057.1| - 4.7e-11 42.5 5.7 7.4e-11 41.8 5.7 1.3 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF2187 PF09953.9 gi|159040805|ref|YP_001540057.1| - 0.062 13.3 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) NIL PF09383.10 gi|159040805|ref|YP_001540057.1| - 0.067 13.1 0.0 0.18 11.7 0.0 1.7 1 1 0 1 1 1 0 NIL domain ApoLp-III PF07464.11 gi|159040805|ref|YP_001540057.1| - 0.11 12.5 1.1 1.9 8.6 0.2 2.5 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) ATP-synt_F PF01990.17 gi|159040806|ref|YP_001540058.1| - 3.6e-13 49.6 0.0 4.4e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF211 PF02680.14 gi|159040808|ref|YP_001540060.1| - 5.9e-24 84.0 3.3 6.5e-24 83.9 3.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 APG6_N PF17675.1 gi|159040809|ref|YP_001540061.1| - 2.5e-05 24.8 34.9 0.014 15.9 15.3 2.5 1 1 1 2 2 2 2 Apg6 coiled-coil region zf-C4H2 PF10146.9 gi|159040809|ref|YP_001540061.1| - 3.4e-05 24.3 22.3 5.7e-05 23.5 14.9 2.2 1 1 2 3 3 3 2 Zinc finger-containing protein Lebercilin PF15619.6 gi|159040809|ref|YP_001540061.1| - 0.00039 20.2 24.6 0.00039 20.2 24.6 1.7 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease Baculo_PEP_C PF04513.12 gi|159040809|ref|YP_001540061.1| - 0.0011 19.0 4.6 0.0092 16.0 0.6 2.5 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus KASH_CCD PF14662.6 gi|159040809|ref|YP_001540061.1| - 0.0015 18.4 25.7 0.0051 16.7 25.5 1.9 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH TMF_DNA_bd PF12329.8 gi|159040809|ref|YP_001540061.1| - 0.003 17.5 30.8 0.013 15.4 10.8 3.6 1 1 1 3 3 3 2 TATA element modulatory factor 1 DNA binding DUF948 PF06103.11 gi|159040809|ref|YP_001540061.1| - 0.003 17.8 7.4 1.5 9.1 0.1 3.5 1 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) Golgin_A5 PF09787.9 gi|159040809|ref|YP_001540061.1| - 0.0035 16.9 24.8 0.036 13.5 9.5 2.1 1 1 1 2 2 2 2 Golgin subfamily A member 5 Snapin_Pallidin PF14712.6 gi|159040809|ref|YP_001540061.1| - 0.005 17.2 13.5 0.035 14.5 1.1 3.8 1 1 1 3 3 3 1 Snapin/Pallidin DUF1664 PF07889.12 gi|159040809|ref|YP_001540061.1| - 0.0058 16.7 13.2 0.045 13.8 1.6 3.2 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|159040809|ref|YP_001540061.1| - 0.0062 16.4 9.4 0.49 10.3 0.6 2.9 1 1 1 2 2 2 1 Sec34-like family DUF2353 PF09789.9 gi|159040809|ref|YP_001540061.1| - 0.0076 15.7 19.2 0.017 14.5 18.7 1.8 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) TMPIT PF07851.13 gi|159040809|ref|YP_001540061.1| - 0.015 14.5 16.4 0.026 13.8 1.7 2.4 1 1 1 2 2 2 0 TMPIT-like protein Mod_r PF07200.13 gi|159040809|ref|YP_001540061.1| - 0.016 15.3 7.7 0.016 15.3 7.7 2.5 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Lectin_N PF03954.14 gi|159040809|ref|YP_001540061.1| - 0.018 14.8 6.2 2.8 7.7 0.0 3.2 2 1 1 3 3 3 0 Hepatic lectin, N-terminal domain Tweety PF04906.13 gi|159040809|ref|YP_001540061.1| - 0.026 13.2 7.7 0.059 12.0 1.1 2.1 1 1 1 2 2 2 0 Tweety YabA PF06156.13 gi|159040809|ref|YP_001540061.1| - 0.028 15.0 22.6 0.37 11.4 9.7 3.2 1 1 2 3 3 3 0 Initiation control protein YabA MCPsignal PF00015.21 gi|159040809|ref|YP_001540061.1| - 0.029 14.2 9.7 0.042 13.7 1.6 2.9 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FapA PF03961.13 gi|159040809|ref|YP_001540061.1| - 0.037 12.6 21.1 0.15 10.7 9.8 2.3 1 1 1 2 2 2 0 Flagellar Assembly Protein A COG6 PF06419.11 gi|159040809|ref|YP_001540061.1| - 0.038 12.2 15.4 0.11 10.6 2.2 3.0 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 UPF0242 PF06785.11 gi|159040809|ref|YP_001540061.1| - 0.039 14.0 25.3 1.2 9.2 7.9 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus ABATE PF07336.11 gi|159040809|ref|YP_001540061.1| - 0.04 14.6 0.1 0.85 10.3 0.0 2.6 1 1 0 2 2 2 0 Putative stress-induced transcription regulator DUF16 PF01519.16 gi|159040809|ref|YP_001540061.1| - 0.052 14.0 17.0 0.29 11.7 2.3 3.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Prominin PF05478.11 gi|159040809|ref|YP_001540061.1| - 0.081 10.9 14.2 0.19 9.7 9.4 2.0 1 1 1 2 2 2 0 Prominin Seryl_tRNA_N PF02403.22 gi|159040809|ref|YP_001540061.1| - 0.085 13.1 25.7 0.96 9.7 12.8 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain EzrA PF06160.12 gi|159040809|ref|YP_001540061.1| - 0.092 10.9 26.4 1.2 7.2 11.5 3.4 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA GlnD_UR_UTase PF08335.11 gi|159040809|ref|YP_001540061.1| - 0.11 12.6 10.0 4.6 7.3 2.9 3.0 1 1 2 3 3 3 0 GlnD PII-uridylyltransferase GlnE PF03710.15 gi|159040809|ref|YP_001540061.1| - 0.12 11.7 0.0 0.12 11.7 0.0 2.6 1 1 2 3 3 3 0 Glutamate-ammonia ligase adenylyltransferase SHE3 PF17078.5 gi|159040809|ref|YP_001540061.1| - 0.12 12.0 19.7 0.39 10.4 19.6 1.9 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 ZapB PF06005.12 gi|159040809|ref|YP_001540061.1| - 0.15 12.5 37.4 5.9 7.4 7.9 3.6 1 1 2 3 3 3 0 Cell division protein ZapB DUF3449 PF11931.8 gi|159040809|ref|YP_001540061.1| - 0.17 11.7 10.4 0.15 11.9 2.9 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF3449) GAS PF13851.6 gi|159040809|ref|YP_001540061.1| - 0.18 11.2 28.9 0.05 12.9 19.3 3.0 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Uso1_p115_C PF04871.13 gi|159040809|ref|YP_001540061.1| - 0.18 12.2 23.6 6.9e+03 -2.6 23.6 3.0 1 1 0 1 1 0 0 Uso1 / p115 like vesicle tethering protein, C terminal region Phage_GPO PF05929.11 gi|159040809|ref|YP_001540061.1| - 0.21 11.2 10.4 0.18 11.4 2.3 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase ERM PF00769.19 gi|159040809|ref|YP_001540061.1| - 0.22 11.3 28.1 0.12 12.1 24.9 1.8 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF724 PF05266.14 gi|159040809|ref|YP_001540061.1| - 0.26 11.1 21.8 0.079 12.8 7.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) YojJ PF10372.9 gi|159040809|ref|YP_001540061.1| - 0.28 11.3 10.2 3.5 7.8 0.5 4.1 1 1 2 4 4 4 0 Bacterial membrane-spanning protein N-terminus DUF2482 PF10655.9 gi|159040809|ref|YP_001540061.1| - 0.31 11.6 0.1 0.31 11.6 0.1 2.9 3 1 0 3 3 2 0 Hypothetical protein of unknown function (DUF2482) FlxA PF14282.6 gi|159040809|ref|YP_001540061.1| - 0.33 10.9 12.8 2.3 8.3 0.2 3.3 1 1 2 3 3 3 0 FlxA-like protein DUF4618 PF15397.6 gi|159040809|ref|YP_001540061.1| - 0.33 10.3 21.0 0.44 9.9 0.8 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) Pepsin-I3 PF06394.13 gi|159040809|ref|YP_001540061.1| - 0.38 11.0 4.0 4.9 7.4 0.4 2.8 1 1 1 2 2 2 0 Pepsin inhibitor-3-like repeated domain DNA_pol_alpha_N PF12254.8 gi|159040809|ref|YP_001540061.1| - 0.42 10.7 11.9 46 4.2 0.7 3.8 1 1 1 2 2 2 0 DNA polymerase alpha subunit p180 N terminal BLOC1_2 PF10046.9 gi|159040809|ref|YP_001540061.1| - 0.49 10.7 15.8 3.9 7.9 1.0 3.5 1 1 3 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF5315 PF17242.2 gi|159040809|ref|YP_001540061.1| - 0.57 10.0 19.4 7.6 6.4 7.1 5.0 1 1 2 3 3 3 0 Disordered region of unknown function (DUF5315) OmpH PF03938.14 gi|159040809|ref|YP_001540061.1| - 0.62 10.4 17.2 0.054 13.8 6.3 2.3 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) SKA2 PF16740.5 gi|159040809|ref|YP_001540061.1| - 0.67 9.8 13.9 5.5 6.8 5.4 3.3 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 NAPRTase_C PF17956.1 gi|159040809|ref|YP_001540061.1| - 0.74 10.3 9.2 21 5.6 0.3 3.7 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain ADIP PF11559.8 gi|159040809|ref|YP_001540061.1| - 0.85 9.7 22.5 1.3 9.0 9.1 2.6 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding CheZ PF04344.13 gi|159040809|ref|YP_001540061.1| - 1 9.2 10.3 0.91 9.4 1.7 2.4 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ Fib_alpha PF08702.10 gi|159040809|ref|YP_001540061.1| - 1.1 9.5 16.8 9.9 6.3 1.2 3.0 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family JAKMIP_CC3 PF16034.5 gi|159040809|ref|YP_001540061.1| - 1.2 9.0 27.2 19 5.1 8.6 3.5 1 1 2 3 3 3 0 JAKMIP CC3 domain Cauli_AT PF03233.13 gi|159040809|ref|YP_001540061.1| - 1.3 8.9 14.6 3.6 7.5 5.1 2.5 1 1 1 2 2 2 0 Aphid transmission protein ATP-synt_ab_C PF00306.27 gi|159040809|ref|YP_001540061.1| - 1.3 9.3 7.2 0.63 10.4 2.5 2.5 1 1 2 3 3 3 0 ATP synthase alpha/beta chain, C terminal domain Baculo_F PF12259.8 gi|159040809|ref|YP_001540061.1| - 1.5 7.2 7.9 1.6 7.1 1.6 2.0 1 1 1 2 2 2 0 Baculovirus F protein Laminin_II PF06009.12 gi|159040809|ref|YP_001540061.1| - 1.7 8.6 15.2 3.6 7.6 7.9 2.5 1 1 1 2 2 2 0 Laminin Domain II EMP24_GP25L PF01105.24 gi|159040809|ref|YP_001540061.1| - 1.9 8.4 14.1 4.1 7.3 3.5 3.4 1 1 3 4 4 4 0 emp24/gp25L/p24 family/GOLD AATF-Che1 PF13339.6 gi|159040809|ref|YP_001540061.1| - 2 9.1 14.8 5.6 7.7 5.5 2.4 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor HAP1_N PF04849.13 gi|159040809|ref|YP_001540061.1| - 2.4 7.3 26.3 1.1 8.4 20.0 2.2 1 1 1 2 2 2 0 HAP1 N-terminal conserved region TPR_MLP1_2 PF07926.12 gi|159040809|ref|YP_001540061.1| - 2.5 8.2 29.4 5.9 7.0 8.0 2.8 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein BRE1 PF08647.11 gi|159040809|ref|YP_001540061.1| - 2.7 8.1 25.4 0.48 10.5 3.3 3.2 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase PRKG1_interact PF15898.5 gi|159040809|ref|YP_001540061.1| - 2.9 8.8 26.3 10 7.1 1.4 3.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain DUF2205 PF10224.9 gi|159040809|ref|YP_001540061.1| - 3.9 7.5 20.9 5 7.2 3.2 4.1 1 1 3 4 4 4 0 Short coiled-coil protein Cytochrom_C_2 PF01322.20 gi|159040809|ref|YP_001540061.1| - 4.1 8.3 11.0 51 4.8 0.4 3.2 1 1 1 2 2 2 0 Cytochrome C' bZIP_1 PF00170.21 gi|159040809|ref|YP_001540061.1| - 4.5 7.5 21.5 4.1 7.6 0.6 3.9 1 1 3 4 4 4 0 bZIP transcription factor CREPT PF16566.5 gi|159040809|ref|YP_001540061.1| - 4.7 7.4 16.5 10 6.3 3.8 2.5 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Occludin_ELL PF07303.13 gi|159040809|ref|YP_001540061.1| - 4.8 8.0 10.5 4.1e+02 1.8 10.5 2.8 1 1 0 1 1 1 0 Occludin homology domain AAA_13 PF13166.6 gi|159040809|ref|YP_001540061.1| - 4.9 5.7 20.6 39 2.7 20.6 1.9 1 1 0 1 1 1 0 AAA domain DUF1394 PF07159.12 gi|159040809|ref|YP_001540061.1| - 5 6.3 10.2 6.7 5.9 5.1 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF1394) Vps51 PF08700.11 gi|159040809|ref|YP_001540061.1| - 5 7.3 10.1 0.85 9.7 0.1 3.7 2 1 0 2 2 1 0 Vps51/Vps67 DUF3450 PF11932.8 gi|159040809|ref|YP_001540061.1| - 5.2 6.3 19.0 1.2 8.4 3.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) AAA_27 PF13514.6 gi|159040809|ref|YP_001540061.1| - 5.8 6.4 11.5 3.7 7.1 0.2 3.1 1 1 3 4 4 4 0 AAA domain CENP-H PF05837.12 gi|159040809|ref|YP_001540061.1| - 6.2 7.3 24.2 2.2 8.7 11.3 3.2 1 1 2 3 3 3 0 Centromere protein H (CENP-H) Jnk-SapK_ap_N PF09744.9 gi|159040809|ref|YP_001540061.1| - 6.4 7.0 29.7 2.4 8.4 24.5 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 CCDC-167 PF15188.6 gi|159040809|ref|YP_001540061.1| - 7.3 7.0 30.3 2 8.8 11.4 4.1 2 1 2 4 4 4 0 Coiled-coil domain-containing protein 167 Cluap1 PF10234.9 gi|159040809|ref|YP_001540061.1| - 8.3 5.7 21.2 14 5.0 1.3 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 TMCO5 PF14992.6 gi|159040809|ref|YP_001540061.1| - 9.6 5.7 24.0 1.2 8.7 19.3 1.7 1 1 1 2 2 2 0 TMCO5 family Sugar_tr PF00083.24 gi|159040810|ref|YP_001540062.1| - 5.5e-15 55.2 40.3 8.8e-15 54.5 16.1 2.1 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|159040810|ref|YP_001540062.1| - 9.4e-14 51.1 59.1 9.4e-14 51.1 59.1 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily QRPTase_C PF01729.19 gi|159040811|ref|YP_001540063.1| - 1.3e-51 174.7 4.2 1.7e-51 174.3 4.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|159040811|ref|YP_001540063.1| - 2.3e-21 75.6 0.0 5e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Mut7-C PF01927.16 gi|159040811|ref|YP_001540063.1| - 0.075 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Mut7-C RNAse domain IMS_HHH PF11798.8 gi|159040812|ref|YP_001540064.1| - 0.15 12.4 0.1 0.3 11.5 0.1 1.5 1 0 0 1 1 1 0 IMS family HHH motif HTH_10 PF04967.12 gi|159040813|ref|YP_001540065.1| - 3.6e-18 65.1 0.2 8e-18 64.0 0.2 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Phage_AlpA PF05930.12 gi|159040813|ref|YP_001540065.1| - 0.05 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_11 PF08279.12 gi|159040813|ref|YP_001540065.1| - 0.051 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.11 gi|159040813|ref|YP_001540065.1| - 0.057 13.4 0.0 0.18 11.9 0.0 1.9 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 gi|159040813|ref|YP_001540065.1| - 0.063 13.5 0.1 0.15 12.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|159040813|ref|YP_001540065.1| - 0.071 12.7 0.1 0.15 11.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|159040813|ref|YP_001540065.1| - 0.091 12.7 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|159040813|ref|YP_001540065.1| - 0.093 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_22 PF13309.6 gi|159040813|ref|YP_001540065.1| - 0.098 12.7 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|159040813|ref|YP_001540065.1| - 0.14 12.0 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain GerE PF00196.19 gi|159040813|ref|YP_001540065.1| - 0.15 11.6 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family AhpC-TSA PF00578.21 gi|159040814|ref|YP_001540066.1| - 1.4e-39 134.8 0.0 1.7e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|159040814|ref|YP_001540066.1| - 7.4e-30 103.6 0.0 8.5e-30 103.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|159040814|ref|YP_001540066.1| - 1.6e-06 28.0 0.0 3e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|159040814|ref|YP_001540066.1| - 0.00028 21.0 0.0 0.00035 20.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme GSHPx PF00255.19 gi|159040814|ref|YP_001540066.1| - 0.00029 20.4 0.0 0.0018 17.9 0.0 1.9 1 1 0 1 1 1 1 Glutathione peroxidase DUF899 PF05988.12 gi|159040814|ref|YP_001540066.1| - 0.011 15.3 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Fucose_iso_C PF02952.17 gi|159040815|ref|YP_001540067.1| - 0.07 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain Glyco_hydro_28 PF00295.17 gi|159040816|ref|YP_001540068.1| - 8.8e-43 146.6 3.6 1.3e-38 132.9 1.3 2.6 2 1 0 2 2 2 2 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.7 gi|159040816|ref|YP_001540068.1| - 2.8e-14 53.5 6.2 7.5e-12 45.5 0.0 3.4 2 1 0 3 3 3 3 Pectate lyase superfamily protein NosD PF05048.13 gi|159040816|ref|YP_001540068.1| - 7.9e-07 28.6 4.2 0.25 10.6 0.3 3.3 2 1 1 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|159040816|ref|YP_001540068.1| - 9.1e-07 28.9 14.0 0.00014 21.8 3.7 2.9 1 1 0 2 2 2 2 Right handed beta helix region FMN_dh PF01070.18 gi|159040817|ref|YP_001540069.1| - 3.3e-28 98.7 0.2 1.1e-26 93.7 0.2 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|159040817|ref|YP_001540069.1| - 2.4e-06 26.9 1.3 3.3e-06 26.5 0.4 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|159040817|ref|YP_001540069.1| - 4.1e-05 22.8 2.8 0.0031 16.6 1.8 2.7 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain SBP_bac_5 PF00496.22 gi|159040818|ref|YP_001540070.1| - 9.3e-29 100.5 3.6 1.7e-28 99.7 3.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159040818|ref|YP_001540070.1| - 0.025 14.5 6.1 0.035 14.0 6.1 1.2 1 0 0 1 1 1 0 Rifin MGC-24 PF05283.11 gi|159040818|ref|YP_001540070.1| - 0.44 11.0 14.4 0.86 10.0 14.4 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Stevor PF17410.2 gi|159040818|ref|YP_001540070.1| - 1.2 8.6 8.2 1.9 7.9 8.2 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame TAT_signal PF10518.9 gi|159040819|ref|YP_001540071.1| - 0.0023 17.7 2.2 0.0047 16.7 2.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF2961 PF11175.8 gi|159040820|ref|YP_001540072.1| - 5.6e-69 232.4 0.1 8e-69 231.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2961) Sulfatase PF00884.23 gi|159040823|ref|YP_001540075.1| - 2.4e-47 161.8 0.0 3.1e-47 161.5 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|159040823|ref|YP_001540075.1| - 4e-10 39.8 1.1 2.9e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|159040823|ref|YP_001540075.1| - 0.00059 18.6 0.0 0.00085 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF4976 PF16347.5 gi|159040823|ref|YP_001540075.1| - 0.0017 18.6 0.0 0.0099 16.1 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4976) DUF4994 PF16385.5 gi|159040823|ref|YP_001540075.1| - 0.023 14.6 0.1 0.058 13.3 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF1501 PF07394.12 gi|159040823|ref|YP_001540075.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF4994 PF16385.5 gi|159040824|ref|YP_001540076.1| - 0.035 14.0 0.1 0.065 13.2 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function NucS PF01939.16 gi|159040826|ref|YP_001540078.1| - 4.3e-60 202.9 0.0 5.5e-60 202.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|159040826|ref|YP_001540078.1| - 0.0002 21.5 0.0 0.00044 20.4 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 PDDEXK_4 PF14281.6 gi|159040826|ref|YP_001540078.1| - 0.004 17.3 0.0 0.0055 16.9 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_9 PF08011.11 gi|159040826|ref|YP_001540078.1| - 0.0085 16.0 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N PF04313.14 gi|159040826|ref|YP_001540078.1| - 0.025 14.5 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Cas_Cas4 PF01930.17 gi|159040826|ref|YP_001540078.1| - 0.033 14.3 0.0 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF83 YhcG_C PF06250.11 gi|159040826|ref|YP_001540078.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain SGL PF08450.12 gi|159040827|ref|YP_001540079.1| - 9.1e-74 248.1 0.1 1.1e-73 247.9 0.1 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Str_synth PF03088.16 gi|159040827|ref|YP_001540079.1| - 0.024 14.7 0.0 0.052 13.7 0.0 1.6 1 0 0 1 1 1 0 Strictosidine synthase Reg_prop PF07494.11 gi|159040827|ref|YP_001540079.1| - 0.068 13.4 0.4 5.2 7.6 0.0 3.9 4 0 0 4 4 4 0 Two component regulator propeller Glyoxal_oxid_N PF07250.11 gi|159040827|ref|YP_001540079.1| - 0.16 11.2 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus zf-C2HC_2 PF13913.6 gi|159040828|ref|YP_001540080.1| - 0.0003 20.6 3.1 0.1 12.6 0.1 2.2 2 0 0 2 2 2 2 zinc-finger of a C2HC-type PknG_rubred PF16919.5 gi|159040828|ref|YP_001540080.1| - 0.0012 19.0 0.3 0.0013 18.9 0.3 1.1 1 0 0 1 1 1 1 Protein kinase G rubredoxin domain Zn-ribbon_8 PF09723.10 gi|159040828|ref|YP_001540080.1| - 0.0015 18.6 0.1 0.0024 17.9 0.1 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|159040828|ref|YP_001540080.1| - 0.0016 18.1 4.4 0.013 15.1 4.4 2.1 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|159040828|ref|YP_001540080.1| - 0.0032 17.4 0.7 1.3 9.0 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|159040828|ref|YP_001540080.1| - 0.006 16.3 0.7 0.71 9.6 0.0 2.2 1 1 1 2 2 2 1 Ribosomal protein S27 zf-H2C2_2 PF13465.6 gi|159040828|ref|YP_001540080.1| - 0.013 15.9 0.1 7.8 7.1 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.26 gi|159040828|ref|YP_001540080.1| - 0.016 15.7 0.7 4.5 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-RING_7 PF02591.15 gi|159040828|ref|YP_001540080.1| - 0.024 14.8 0.9 1.7 8.9 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain DZR PF12773.7 gi|159040828|ref|YP_001540080.1| - 0.024 14.6 0.2 0.05 13.6 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|159040828|ref|YP_001540080.1| - 0.028 13.8 1.8 0.052 13.0 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|159040828|ref|YP_001540080.1| - 0.029 14.3 0.7 0.07 13.0 0.1 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG HypA PF01155.19 gi|159040828|ref|YP_001540080.1| - 0.038 14.0 0.1 0.041 13.9 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|159040828|ref|YP_001540080.1| - 0.044 13.5 1.9 0.34 10.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|159040828|ref|YP_001540080.1| - 0.05 13.9 0.1 6.7 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon DUF3268 PF11672.8 gi|159040828|ref|YP_001540080.1| - 0.056 13.8 0.2 2.7 8.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger-containing domain CpXC PF14353.6 gi|159040828|ref|YP_001540080.1| - 0.069 13.2 0.4 0.27 11.3 0.0 1.8 1 1 1 2 2 2 0 CpXC protein Zn_ribbon_SprT PF17283.2 gi|159040828|ref|YP_001540080.1| - 0.071 13.0 2.4 0.62 10.0 2.4 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2H2_11 PF16622.5 gi|159040828|ref|YP_001540080.1| - 0.079 12.7 1.3 9.4 6.1 0.4 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type UPF0547 PF10571.9 gi|159040828|ref|YP_001540080.1| - 0.092 12.8 0.3 0.092 12.8 0.3 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|159040828|ref|YP_001540080.1| - 0.097 12.5 0.4 5.4 7.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_4 PF13894.6 gi|159040828|ref|YP_001540080.1| - 0.13 13.2 2.0 7.2 7.7 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HE PF16278.5 gi|159040828|ref|YP_001540080.1| - 0.16 12.4 0.2 2.6 8.5 0.1 2.0 2 0 0 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger TF_Zn_Ribbon PF08271.12 gi|159040828|ref|YP_001540080.1| - 2.8 7.5 7.9 2.2 7.8 3.0 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2791 PF10923.8 gi|159040829|ref|YP_001540081.1| - 0.0022 16.9 0.1 0.0025 16.7 0.1 1.1 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) TsaE PF02367.17 gi|159040829|ref|YP_001540081.1| - 0.016 15.2 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|159040829|ref|YP_001540081.1| - 0.017 15.5 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|159040829|ref|YP_001540081.1| - 0.07 12.4 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|159040829|ref|YP_001540081.1| - 0.2 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region OCD_Mu_crystall PF02423.15 gi|159040830|ref|YP_001540082.1| - 3.7e-40 137.8 0.0 5e-40 137.4 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|159040830|ref|YP_001540082.1| - 0.0036 17.4 0.0 0.0058 16.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|159040830|ref|YP_001540082.1| - 0.023 15.3 0.0 0.038 14.6 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent H2O2_YaaD PF03883.14 gi|159040831|ref|YP_001540083.1| - 0.0096 15.4 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Peroxide stress protein YaaA ThiS PF02597.20 gi|159040832|ref|YP_001540084.1| - 4.3e-15 56.1 0.0 4.9e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|159040832|ref|YP_001540084.1| - 1.8e-05 25.0 0.1 2e-05 24.9 0.1 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) YukD PF08817.10 gi|159040832|ref|YP_001540084.1| - 0.027 15.1 0.0 0.031 15.0 0.0 1.3 1 1 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukD Phosphodiest PF01663.22 gi|159040833|ref|YP_001540085.1| - 7.4e-22 78.4 0.2 6.3e-20 72.1 0.2 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|159040833|ref|YP_001540085.1| - 2e-08 34.5 0.0 6e-07 29.7 0.0 2.2 2 0 0 2 2 2 1 PglZ domain Metalloenzyme PF01676.18 gi|159040833|ref|YP_001540085.1| - 0.0014 18.0 0.0 0.0098 15.3 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily FeS_assembly_P PF01883.19 gi|159040834|ref|YP_001540086.1| - 1.7e-17 63.3 0.1 3.1e-17 62.5 0.1 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Pyr_redox_2 PF07992.14 gi|159040835|ref|YP_001540087.1| - 2.4e-56 191.2 1.3 3.1e-56 190.8 1.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|159040835|ref|YP_001540087.1| - 5.1e-29 100.8 0.3 1.1e-28 99.7 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|159040835|ref|YP_001540087.1| - 1.2e-21 77.1 5.7 2.9e-20 72.6 0.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|159040835|ref|YP_001540087.1| - 3.2e-14 52.9 0.0 2.3e-13 50.1 0.0 1.7 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|159040835|ref|YP_001540087.1| - 3.2e-13 49.5 0.2 7e-07 28.7 0.0 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|159040835|ref|YP_001540087.1| - 5.9e-09 35.1 5.7 0.0012 17.7 0.2 4.3 3 1 1 4 4 4 2 HI0933-like protein FAD_oxidored PF12831.7 gi|159040835|ref|YP_001540087.1| - 8.9e-07 28.6 5.9 2.1e-05 24.1 0.0 2.8 2 1 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|159040835|ref|YP_001540087.1| - 4.9e-06 25.9 13.3 3.7e-05 23.0 0.6 3.4 2 1 2 4 4 4 1 FAD binding domain DAO PF01266.24 gi|159040835|ref|YP_001540087.1| - 1.8e-05 24.5 18.9 0.063 12.9 0.1 3.6 3 1 1 4 4 4 3 FAD dependent oxidoreductase Thi4 PF01946.17 gi|159040835|ref|YP_001540087.1| - 4.3e-05 22.9 1.9 0.077 12.2 0.1 2.6 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.6 gi|159040835|ref|YP_001540087.1| - 0.00011 22.4 7.1 0.0075 16.5 1.4 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|159040835|ref|YP_001540087.1| - 0.00053 19.3 10.4 0.11 11.7 3.4 2.4 2 1 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|159040835|ref|YP_001540087.1| - 0.0013 18.4 0.6 0.0013 18.4 0.6 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|159040835|ref|YP_001540087.1| - 0.0027 17.0 1.6 0.0088 15.4 0.1 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|159040835|ref|YP_001540087.1| - 0.026 13.6 5.0 1 8.3 0.6 2.8 3 1 0 3 3 3 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|159040835|ref|YP_001540087.1| - 0.095 12.0 0.0 0.22 10.8 0.0 1.7 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|159040835|ref|YP_001540087.1| - 0.11 12.9 0.4 11 6.5 0.1 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding ThiF PF00899.21 gi|159040835|ref|YP_001540087.1| - 0.3 10.4 1.1 0.82 9.0 0.2 2.1 2 0 0 2 2 2 0 ThiF family 3HCDH_N PF02737.18 gi|159040835|ref|YP_001540087.1| - 1.3 8.9 6.1 0.31 10.9 0.3 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|159040835|ref|YP_001540087.1| - 2.7 8.3 8.2 9.8 6.5 0.6 3.3 3 0 0 3 3 3 0 TrkA-N domain DUF89 PF01937.19 gi|159040836|ref|YP_001540088.1| - 6.3e-19 68.1 0.3 4e-18 65.5 0.3 2.3 1 1 0 1 1 1 1 Protein of unknown function DUF89 GATase_3 PF07685.14 gi|159040837|ref|YP_001540089.1| - 7.8e-39 133.3 0.0 1e-38 132.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|159040837|ref|YP_001540089.1| - 3.1e-15 56.4 0.0 1.1e-13 51.4 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|159040837|ref|YP_001540089.1| - 8.8e-09 35.5 0.0 1.6e-07 31.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain SNO PF01174.19 gi|159040837|ref|YP_001540089.1| - 0.062 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase PF00117.28 gi|159040837|ref|YP_001540089.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Amidohydro_1 PF01979.20 gi|159040838|ref|YP_001540090.1| - 1e-55 189.5 0.0 1.2e-55 189.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|159040838|ref|YP_001540090.1| - 1.9e-16 60.6 0.0 2.9e-14 53.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family ABC_tran PF00005.27 gi|159040839|ref|YP_001540091.1| - 3.4e-09 37.3 0.0 3.7e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159040839|ref|YP_001540091.1| - 2.1e-07 31.1 0.1 2.2e-07 31.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|159040839|ref|YP_001540091.1| - 1.3e-06 29.1 0.0 1.3e-06 29.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|159040839|ref|YP_001540091.1| - 7.2e-05 22.5 0.1 0.0001 22.0 0.1 1.2 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|159040839|ref|YP_001540091.1| - 0.00013 21.5 0.1 0.00014 21.3 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|159040839|ref|YP_001540091.1| - 0.00035 19.5 0.1 0.00037 19.4 0.1 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|159040839|ref|YP_001540091.1| - 0.00039 20.2 0.0 0.00043 20.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|159040839|ref|YP_001540091.1| - 0.001 18.2 0.0 0.001 18.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|159040839|ref|YP_001540091.1| - 0.0015 19.0 0.0 0.0015 19.0 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|159040839|ref|YP_001540091.1| - 0.0015 18.3 0.1 0.0017 18.2 0.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|159040839|ref|YP_001540091.1| - 0.0023 17.6 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|159040839|ref|YP_001540091.1| - 0.0059 16.9 0.0 0.0075 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|159040839|ref|YP_001540091.1| - 0.009 15.9 0.0 0.012 15.6 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|159040839|ref|YP_001540091.1| - 0.0097 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|159040839|ref|YP_001540091.1| - 0.014 15.8 0.0 0.016 15.6 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PIF1 PF05970.14 gi|159040839|ref|YP_001540091.1| - 0.019 14.2 0.0 0.023 13.9 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase ATP_bind_1 PF03029.17 gi|159040839|ref|YP_001540091.1| - 0.021 14.6 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|159040839|ref|YP_001540091.1| - 0.022 15.1 0.1 0.028 14.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|159040839|ref|YP_001540091.1| - 0.024 14.0 0.0 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|159040839|ref|YP_001540091.1| - 0.026 14.4 0.1 0.032 14.1 0.1 1.2 1 1 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|159040839|ref|YP_001540091.1| - 0.029 14.9 0.0 0.036 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|159040839|ref|YP_001540091.1| - 0.029 13.9 0.2 0.039 13.6 0.2 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|159040839|ref|YP_001540091.1| - 0.055 13.4 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 NTPase AAA_28 PF13521.6 gi|159040839|ref|YP_001540091.1| - 0.058 13.6 0.0 0.068 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|159040839|ref|YP_001540091.1| - 0.059 12.0 0.0 0.059 12.0 0.0 1.0 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|159040839|ref|YP_001540091.1| - 0.069 11.9 0.1 0.085 11.6 0.1 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF3584 PF12128.8 gi|159040839|ref|YP_001540091.1| - 0.087 10.3 0.1 0.1 10.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|159040839|ref|YP_001540091.1| - 0.1 12.7 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|159040839|ref|YP_001540091.1| - 0.11 11.3 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PduV-EutP PF10662.9 gi|159040839|ref|YP_001540091.1| - 0.12 12.1 0.1 0.27 11.0 0.0 1.6 1 1 1 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.6 gi|159040839|ref|YP_001540091.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|159040839|ref|YP_001540091.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|159040839|ref|YP_001540091.1| - 0.2 10.9 0.0 0.24 10.6 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|159040839|ref|YP_001540091.1| - 0.21 11.3 0.0 0.24 11.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF1614 PF07758.11 gi|159040840|ref|YP_001540092.1| - 1.3e-46 158.7 18.9 1.3e-46 158.7 18.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1614) Amidohydro_1 PF01979.20 gi|159040841|ref|YP_001540093.1| - 2.4e-18 66.6 0.4 5e-18 65.5 0.4 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|159040841|ref|YP_001540093.1| - 2.2e-10 40.6 0.0 1.1e-06 28.5 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family AMP-binding PF00501.28 gi|159040842|ref|YP_001540094.1| - 6.2e-90 301.8 0.0 7.5e-90 301.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|159040842|ref|YP_001540094.1| - 1.2e-29 103.0 1.2 1.2e-29 103.0 1.2 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|159040842|ref|YP_001540094.1| - 9e-20 70.4 0.5 2.9e-19 68.7 0.5 2.0 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Hydrolase_3 PF08282.12 gi|159040843|ref|YP_001540095.1| - 3e-23 82.9 0.5 7e-20 71.8 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|159040843|ref|YP_001540095.1| - 4.7e-09 36.8 0.1 5.3e-07 30.1 0.0 2.2 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|159040843|ref|YP_001540095.1| - 5.4e-05 22.8 0.0 7.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|159040843|ref|YP_001540095.1| - 0.00029 20.1 0.0 0.071 12.2 0.0 2.1 1 1 0 1 1 1 1 Trehalose-phosphatase HAD PF12710.7 gi|159040843|ref|YP_001540095.1| - 0.014 15.8 0.0 0.22 11.9 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|159040843|ref|YP_001540095.1| - 0.056 13.5 0.0 2.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PIN_9 PF18477.1 gi|159040844|ref|YP_001540096.1| - 8.7e-19 67.9 0.0 1e-18 67.7 0.0 1.0 1 0 0 1 1 1 1 PIN like domain PIN_5 PF08745.11 gi|159040844|ref|YP_001540096.1| - 0.0068 15.9 0.0 0.023 14.1 0.0 1.8 2 0 0 2 2 2 1 PINc domain ribonuclease PIN_4 PF13638.6 gi|159040844|ref|YP_001540096.1| - 0.015 15.6 0.1 5.2 7.4 0.0 2.2 1 1 0 2 2 2 0 PIN domain Fcf1 PF04900.12 gi|159040844|ref|YP_001540096.1| - 0.02 15.2 0.0 0.042 14.3 0.0 1.5 1 1 0 1 1 1 0 Fcf1 PIN PF01850.21 gi|159040844|ref|YP_001540096.1| - 0.023 15.2 0.3 0.36 11.3 0.3 1.9 1 1 1 2 2 2 0 PIN domain DUF5615 PF18480.1 gi|159040844|ref|YP_001540096.1| - 0.024 14.4 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Mut7-C PF01927.16 gi|159040844|ref|YP_001540096.1| - 0.098 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain FAA_hydrolase PF01557.18 gi|159040845|ref|YP_001540097.1| - 2.8e-27 95.8 0.0 8.5e-27 94.2 0.0 1.6 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family AFOR_C PF01314.18 gi|159040846|ref|YP_001540098.1| - 6.2e-100 334.9 0.0 7.6e-100 334.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|159040846|ref|YP_001540098.1| - 7.9e-68 228.2 0.0 1.5e-67 227.3 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain GHMP_kinases_N PF00288.26 gi|159040847|ref|YP_001540099.1| - 1.2e-14 54.3 1.9 2.8e-14 53.1 1.9 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|159040847|ref|YP_001540099.1| - 5.6e-08 33.1 0.0 1.6e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal WIYLD PF10440.9 gi|159040847|ref|YP_001540099.1| - 0.031 14.1 0.0 0.071 12.9 0.0 1.6 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain Met_10 PF02475.16 gi|159040847|ref|YP_001540099.1| - 0.15 11.8 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Thioredoxin_3 PF13192.6 gi|159040848|ref|YP_001540100.1| - 5.1e-09 36.1 0.0 2.3e-08 34.0 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|159040848|ref|YP_001540100.1| - 2.5e-07 30.8 0.0 6.1e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|159040848|ref|YP_001540100.1| - 0.021 15.0 0.1 0.18 12.0 0.0 2.3 3 0 0 3 3 3 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|159040848|ref|YP_001540100.1| - 0.094 13.2 0.0 5.3 7.5 0.0 2.6 1 1 0 1 1 1 0 Thioredoxin-like domain DUF728 PF05304.12 gi|159040848|ref|YP_001540100.1| - 0.13 12.1 0.9 1.6 8.6 0.2 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF728) AFOR_N PF02730.15 gi|159040849|ref|YP_001540101.1| - 6.7e-42 143.6 0.3 1e-41 143.0 0.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|159040849|ref|YP_001540101.1| - 7.3e-17 61.4 0.0 1.9e-16 60.1 0.0 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 eRF1_2 PF03464.15 gi|159040850|ref|YP_001540102.1| - 3.6e-32 111.5 0.0 6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|159040850|ref|YP_001540102.1| - 2.2e-10 40.9 0.0 4.6e-10 39.9 0.0 1.5 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_3 PF03465.15 gi|159040850|ref|YP_001540102.1| - 1.8e-08 34.8 0.7 1.7e-07 31.7 0.7 2.5 1 1 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|159040850|ref|YP_001540102.1| - 2.1e-08 34.5 0.0 3.8e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 Ribosomal_L7Ae PF01248.26 gi|159040850|ref|YP_001540102.1| - 2.4e-06 27.2 0.1 5.8e-06 25.9 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_1 PF03463.15 gi|159040850|ref|YP_001540102.1| - 7e-06 26.1 0.0 1.4e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 DUF2529 PF10740.9 gi|159040850|ref|YP_001540102.1| - 0.11 12.1 0.1 0.32 10.6 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF2529) DUF763 PF05559.11 gi|159040851|ref|YP_001540103.1| - 1.6e-120 402.0 0.0 1.9e-120 401.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Fucose_iso_C PF02952.17 gi|159040853|ref|YP_001540105.1| - 0.0021 17.8 0.0 0.0038 16.9 0.0 1.4 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain DndB PF14072.6 gi|159040853|ref|YP_001540105.1| - 0.12 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA-sulfur modification-associated Methyltrn_RNA_3 PF02598.17 gi|159040854|ref|YP_001540106.1| - 4.3e-42 144.6 0.0 5.1e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase FAD-oxidase_C PF02913.19 gi|159040855|ref|YP_001540107.1| - 1.2e-57 195.5 0.0 1.6e-57 195.0 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|159040855|ref|YP_001540107.1| - 1.6e-39 134.8 0.1 2.8e-39 134.0 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|159040856|ref|YP_001540108.1| - 6e-12 45.8 1.5 7.8e-12 45.5 1.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159040856|ref|YP_001540108.1| - 2.9e-09 37.3 2.3 3.9e-09 36.9 2.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159040856|ref|YP_001540108.1| - 1.9e-08 34.7 5.0 3.7e-08 33.8 5.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159040856|ref|YP_001540108.1| - 6.3e-07 29.4 9.2 0.00029 20.9 11.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|159040856|ref|YP_001540108.1| - 1e-06 28.9 2.2 0.022 15.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159040856|ref|YP_001540108.1| - 1.8e-06 27.7 12.5 0.0036 17.3 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159040856|ref|YP_001540108.1| - 1.9e-06 27.9 5.1 0.011 15.8 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159040856|ref|YP_001540108.1| - 1.5e-05 24.6 12.1 0.0051 16.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|159040856|ref|YP_001540108.1| - 2.1e-05 24.7 9.8 0.0077 16.7 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159040856|ref|YP_001540108.1| - 2.3e-05 24.5 9.4 0.003 17.7 11.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159040856|ref|YP_001540108.1| - 5.1e-05 24.1 8.5 0.00024 22.0 8.7 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|159040856|ref|YP_001540108.1| - 5.5e-05 23.1 12.5 0.0072 16.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|159040856|ref|YP_001540108.1| - 0.0038 17.0 4.1 0.55 10.0 0.1 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|159040856|ref|YP_001540108.1| - 0.037 14.9 11.5 0.61 11.0 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|159040856|ref|YP_001540108.1| - 0.081 13.9 15.0 0.21 12.6 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|159040856|ref|YP_001540108.1| - 0.3 11.9 4.6 7.5 7.4 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|159040856|ref|YP_001540108.1| - 2.4 8.8 9.8 8.4 7.0 1.6 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Nitrate_red_gam PF02665.14 gi|159040857|ref|YP_001540109.1| - 9.5e-05 22.0 12.1 0.018 14.6 2.5 2.2 1 1 1 2 2 2 2 Nitrate reductase gamma subunit APS-reductase_C PF12139.8 gi|159040858|ref|YP_001540110.1| - 8.1e-25 86.9 0.0 1.1e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.7 gi|159040858|ref|YP_001540110.1| - 8e-13 48.8 10.4 1.3e-12 48.1 10.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159040858|ref|YP_001540110.1| - 8.4e-12 44.4 13.1 5.1e-06 26.1 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159040858|ref|YP_001540110.1| - 2.1e-11 43.7 21.0 6.2e-08 32.6 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159040858|ref|YP_001540110.1| - 4.9e-10 39.4 10.2 9.5e-10 38.5 10.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159040858|ref|YP_001540110.1| - 2.6e-09 36.7 13.6 6.2e-06 26.1 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|159040858|ref|YP_001540110.1| - 1.8e-07 32.0 3.7 0.0037 18.2 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|159040858|ref|YP_001540110.1| - 2.4e-06 27.6 7.3 0.014 15.6 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159040858|ref|YP_001540110.1| - 1.6e-05 25.0 14.2 0.00065 20.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|159040858|ref|YP_001540110.1| - 3.5e-05 23.6 14.3 0.00071 19.5 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|159040858|ref|YP_001540110.1| - 7.4e-05 23.4 17.2 0.01 16.7 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|159040858|ref|YP_001540110.1| - 0.00046 20.7 13.5 0.017 15.6 13.5 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|159040858|ref|YP_001540110.1| - 0.00081 19.8 12.7 0.092 13.2 3.6 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|159040858|ref|YP_001540110.1| - 0.0046 17.7 3.9 0.85 10.4 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|159040858|ref|YP_001540110.1| - 0.0086 16.6 11.2 0.087 13.4 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|159040858|ref|YP_001540110.1| - 0.01 16.0 10.9 0.25 11.6 3.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain SPEG_u2 PF16650.5 gi|159040858|ref|YP_001540110.1| - 0.022 14.9 0.6 0.21 11.8 0.9 2.0 2 0 0 2 2 2 0 Unstructured region on SPEG complex protein Fer4_22 PF17179.4 gi|159040858|ref|YP_001540110.1| - 0.15 12.9 8.7 0.26 12.1 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|159040859|ref|YP_001540111.1| - 1.9e-14 53.6 0.4 3e-13 49.7 0.0 2.4 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|159040859|ref|YP_001540111.1| - 8.7e-08 32.2 0.1 1.7e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|159040859|ref|YP_001540111.1| - 5.8e-05 22.8 1.2 0.0036 16.9 1.0 2.5 1 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|159040859|ref|YP_001540111.1| - 0.015 14.4 1.0 0.054 12.6 0.6 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|159040859|ref|YP_001540111.1| - 0.034 13.4 0.9 0.062 12.5 0.1 1.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|159040859|ref|YP_001540111.1| - 0.093 13.0 1.9 0.31 11.3 0.4 2.7 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|159040859|ref|YP_001540111.1| - 0.17 11.1 0.1 0.31 10.3 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ATP-sulfurylase PF01747.17 gi|159040860|ref|YP_001540112.1| - 9.2e-74 247.5 0.0 1.7e-73 246.6 0.0 1.5 2 0 0 2 2 2 1 ATP-sulfurylase PUA_2 PF14306.6 gi|159040860|ref|YP_001540112.1| - 1.1e-40 138.9 0.0 1.5e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain KH_10 PF17905.1 gi|159040860|ref|YP_001540112.1| - 0.019 15.4 0.0 0.034 14.6 0.0 1.4 1 0 0 1 1 1 0 GLD-3 KH domain 5 DUF309 PF03745.14 gi|159040860|ref|YP_001540112.1| - 0.039 13.6 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF309) DUF1967 PF09269.11 gi|159040860|ref|YP_001540112.1| - 0.14 12.1 0.1 2.4 8.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) CTP_transf_like PF01467.26 gi|159040862|ref|YP_001540114.1| - 1.5e-13 51.2 0.0 2.4e-13 50.5 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase-like Glyoxalase_4 PF13669.6 gi|159040863|ref|YP_001540115.1| - 3.3e-24 85.3 0.0 3.9e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|159040863|ref|YP_001540115.1| - 0.00021 21.5 0.0 0.00032 20.9 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_5 PF14696.6 gi|159040863|ref|YP_001540115.1| - 0.001 19.2 0.0 0.0012 19.1 0.0 1.2 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Glyoxalase_6 PF18029.1 gi|159040863|ref|YP_001540115.1| - 0.0013 19.5 0.0 0.0025 18.6 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Fucose_iso_C PF02952.17 gi|159040863|ref|YP_001540115.1| - 0.062 13.0 0.2 0.26 11.0 0.1 2.1 1 1 1 2 2 2 0 L-fucose isomerase, C-terminal domain Ponericin PF07442.11 gi|159040863|ref|YP_001540115.1| - 0.083 12.9 0.5 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Ponericin Peptidase_M1 PF01433.20 gi|159040864|ref|YP_001540116.1| - 1.9e-47 161.6 0.4 2.9e-47 161.1 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|159040864|ref|YP_001540116.1| - 2.2e-28 98.4 5.6 2.5e-14 53.4 2.5 3.6 1 1 1 3 3 3 3 HEAT repeats Peptidase_M1_N PF17900.1 gi|159040864|ref|YP_001540116.1| - 3e-18 66.7 0.0 5.5e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|159040864|ref|YP_001540116.1| - 1e-14 53.6 15.4 0.00066 20.1 0.2 6.5 6 0 0 6 6 6 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|159040864|ref|YP_001540116.1| - 6.8e-13 47.7 1.1 0.037 14.3 0.0 5.8 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.6 gi|159040864|ref|YP_001540116.1| - 3.7e-05 24.1 3.5 0.026 15.0 0.3 3.9 3 1 0 3 3 3 1 HEAT-like repeat Vitellogenin_N PF01347.22 gi|159040864|ref|YP_001540116.1| - 7.7e-05 21.3 0.0 0.13 10.6 0.0 2.2 1 1 1 2 2 2 2 Lipoprotein amino terminal region Arm PF00514.23 gi|159040864|ref|YP_001540116.1| - 0.0025 17.8 0.2 0.11 12.6 0.0 3.5 3 1 1 4 4 4 1 Armadillo/beta-catenin-like repeat TAF6_C PF07571.13 gi|159040864|ref|YP_001540116.1| - 0.17 12.2 0.7 3.7 7.9 0.0 3.4 3 1 0 3 3 3 0 TAF6 C-terminal HEAT repeat domain HalX PF08663.10 gi|159040864|ref|YP_001540116.1| - 0.35 11.2 6.1 0.21 11.9 2.3 2.5 2 0 0 2 2 2 0 HalX domain DUF4140 PF13600.6 gi|159040864|ref|YP_001540116.1| - 0.68 10.4 3.7 0.28 11.6 0.8 1.9 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Sua5_yciO_yrdC PF01300.18 gi|159040867|ref|YP_001540119.1| - 1.5e-53 181.0 0.0 2.5e-53 180.3 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|159040867|ref|YP_001540119.1| - 3e-27 95.8 0.0 4.7e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding DAPDH_C PF16654.5 gi|159040867|ref|YP_001540119.1| - 0.2 11.5 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain Pepdidase_M14_N PF18027.1 gi|159040868|ref|YP_001540120.1| - 0.011 16.1 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 Cytosolic carboxypeptidase N-terminal domain DPPIV_rep PF18811.1 gi|159040868|ref|YP_001540120.1| - 0.59 10.1 4.3 0.17 11.8 0.7 2.0 2 0 0 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) low complexity region B277 PF17623.2 gi|159040869|ref|YP_001540121.1| - 0.074 12.1 0.3 0.1 11.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function Aminotran_3 PF00202.21 gi|159040870|ref|YP_001540122.1| - 1.3e-60 205.2 0.0 1.7e-60 204.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|159040870|ref|YP_001540122.1| - 0.0061 15.8 0.0 0.091 11.9 0.0 2.3 2 0 0 2 2 2 1 Aminotransferase class I and II DUF2175 PF09943.9 gi|159040871|ref|YP_001540123.1| - 5.4e-33 113.2 0.0 6.2e-33 113.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) COX1 PF00115.20 gi|159040872|ref|YP_001540124.1| - 4.2e-29 101.7 58.3 4.2e-29 101.7 58.3 2.3 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I MerE PF05052.12 gi|159040872|ref|YP_001540124.1| - 0.014 15.3 0.1 0.1 12.5 0.1 2.5 1 0 0 1 1 1 0 MerE protein HTH_10 PF04967.12 gi|159040873|ref|YP_001540125.1| - 1.1e-17 63.6 0.4 2e-17 62.7 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|159040873|ref|YP_001540125.1| - 4.6e-05 22.8 0.5 0.00014 21.3 0.4 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|159040873|ref|YP_001540125.1| - 0.00028 20.4 0.0 0.00063 19.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|159040873|ref|YP_001540125.1| - 0.00069 19.5 0.1 0.0016 18.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|159040873|ref|YP_001540125.1| - 0.0018 18.3 0.0 0.0097 16.0 0.0 2.2 3 0 0 3 3 2 1 Helix-turn-helix domain MarR PF01047.22 gi|159040873|ref|YP_001540125.1| - 0.002 18.0 0.1 0.0077 16.1 0.1 2.0 1 1 0 1 1 1 1 MarR family HTH_17 PF12728.7 gi|159040873|ref|YP_001540125.1| - 0.0032 17.6 0.0 0.0073 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|159040873|ref|YP_001540125.1| - 0.005 16.8 0.1 0.012 15.5 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_22 PF13309.6 gi|159040873|ref|YP_001540125.1| - 0.0095 16.0 0.1 0.02 15.0 0.1 1.5 1 0 0 1 1 1 1 HTH domain MerR PF00376.23 gi|159040873|ref|YP_001540125.1| - 0.0097 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.6 gi|159040873|ref|YP_001540125.1| - 0.016 15.0 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|159040873|ref|YP_001540125.1| - 0.017 14.8 0.4 0.032 13.9 0.1 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|159040873|ref|YP_001540125.1| - 0.027 14.4 0.6 0.79 9.6 0.0 2.6 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family HTH_8 PF02954.19 gi|159040873|ref|YP_001540125.1| - 0.03 14.1 0.1 0.065 13.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Mga PF05043.13 gi|159040873|ref|YP_001540125.1| - 0.033 14.8 0.0 0.072 13.7 0.0 1.7 1 1 0 1 1 1 0 Mga helix-turn-helix domain FeoC PF09012.10 gi|159040873|ref|YP_001540125.1| - 0.036 14.1 0.0 0.26 11.4 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_Mga PF08280.11 gi|159040873|ref|YP_001540125.1| - 0.043 13.9 0.0 0.11 12.6 0.0 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain IF2_N PF04760.15 gi|159040873|ref|YP_001540125.1| - 0.044 13.6 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Fe_dep_repress PF01325.19 gi|159040873|ref|YP_001540125.1| - 0.046 13.9 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_26 PF13443.6 gi|159040873|ref|YP_001540125.1| - 0.052 14.0 0.0 0.17 12.3 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 gi|159040873|ref|YP_001540125.1| - 0.053 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_DeoR PF08220.12 gi|159040873|ref|YP_001540125.1| - 0.064 13.0 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|159040873|ref|YP_001540125.1| - 0.088 12.6 0.6 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|159040873|ref|YP_001540125.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|159040873|ref|YP_001540125.1| - 0.11 12.7 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase MerR_1 PF13411.6 gi|159040873|ref|YP_001540125.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_6 PF01418.17 gi|159040873|ref|YP_001540125.1| - 0.12 12.4 0.1 0.41 10.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family HTH_35 PF13693.6 gi|159040873|ref|YP_001540125.1| - 0.15 12.1 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|159040873|ref|YP_001540125.1| - 0.39 10.3 5.8 0.49 10.0 0.3 3.3 4 1 0 4 4 2 0 Bacterial regulatory proteins, luxR family Hemerythrin PF01814.23 gi|159040874|ref|YP_001540126.1| - 2.2e-16 60.6 0.1 3.7e-13 50.2 0.0 1.5 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain DUF4791 PF16039.5 gi|159040874|ref|YP_001540126.1| - 0.0055 16.2 0.1 0.0082 15.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4791) DUF488 PF04343.13 gi|159040875|ref|YP_001540127.1| - 2.1e-30 105.8 0.1 2.4e-30 105.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 NIR_SIR PF01077.22 gi|159040876|ref|YP_001540128.1| - 2.5e-25 88.8 0.0 9.6e-17 60.9 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|159040876|ref|YP_001540128.1| - 5.5e-13 48.6 0.0 1.5e-05 24.8 0.0 2.4 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|159040877|ref|YP_001540129.1| - 1.1e-11 44.0 14.8 3.9e-09 35.9 4.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|159040877|ref|YP_001540129.1| - 3.8e-09 37.4 4.2 4.4e-05 24.3 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|159040877|ref|YP_001540129.1| - 8.1e-08 32.7 8.1 3.6e-07 30.7 8.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159040877|ref|YP_001540129.1| - 1.3e-07 31.4 3.4 1.3e-07 31.4 3.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159040877|ref|YP_001540129.1| - 2.3e-07 30.8 9.3 4.4e-07 29.9 9.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159040877|ref|YP_001540129.1| - 4.3e-07 29.6 2.8 4.3e-07 29.6 2.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159040877|ref|YP_001540129.1| - 4.8e-07 29.8 6.7 4.8e-07 29.8 6.7 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159040877|ref|YP_001540129.1| - 6.8e-07 29.4 7.6 1.1e-06 28.6 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|159040877|ref|YP_001540129.1| - 4.7e-05 24.0 2.9 4.7e-05 24.0 2.9 2.4 1 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|159040877|ref|YP_001540129.1| - 0.0001 22.6 3.5 0.0001 22.6 3.5 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|159040877|ref|YP_001540129.1| - 0.00019 21.9 9.4 0.0042 17.6 1.1 2.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|159040877|ref|YP_001540129.1| - 0.00029 21.6 6.8 0.00029 21.6 6.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|159040877|ref|YP_001540129.1| - 0.0018 18.7 8.5 0.026 15.0 2.7 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|159040877|ref|YP_001540129.1| - 0.0037 18.1 3.3 0.014 16.2 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159040877|ref|YP_001540129.1| - 0.0054 17.3 12.3 0.49 11.0 11.5 2.8 1 1 1 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I SLT_L PF14718.6 gi|159040877|ref|YP_001540129.1| - 0.089 12.9 0.8 4.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain Fer4_18 PF13746.6 gi|159040877|ref|YP_001540129.1| - 0.32 11.2 11.8 0.097 12.9 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain EamA PF00892.20 gi|159040878|ref|YP_001540130.1| - 2.6e-29 102.2 38.3 2.4e-15 56.9 15.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|159040878|ref|YP_001540130.1| - 0.083 12.9 13.0 1 9.4 0.8 2.9 2 1 0 2 2 2 0 Putative transmembrane family 234 DUF2207 PF09972.9 gi|159040879|ref|YP_001540131.1| - 0.55 8.9 6.2 0.58 8.9 6.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2085 PF09858.9 gi|159040879|ref|YP_001540131.1| - 2.7 8.5 9.1 0.98 9.9 4.7 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2085) PaREP1 PF05942.11 gi|159040880|ref|YP_001540132.1| - 4.1e-26 91.2 3.5 5e-26 90.9 3.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family RTC PF01137.21 gi|159040881|ref|YP_001540133.1| - 1.8e-80 269.3 0.0 2.1e-80 269.1 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|159040881|ref|YP_001540133.1| - 1.5e-26 92.9 0.0 2.4e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain SRP54 PF00448.22 gi|159040882|ref|YP_001540134.1| - 8e-63 211.6 0.1 1.2e-62 211.1 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|159040882|ref|YP_001540134.1| - 2.1e-27 95.6 2.0 2.3e-26 92.3 1.2 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|159040882|ref|YP_001540134.1| - 3.2e-12 46.5 0.2 3.2e-12 46.5 0.2 2.7 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|159040882|ref|YP_001540134.1| - 8.1e-05 22.7 0.0 0.00017 21.6 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|159040882|ref|YP_001540134.1| - 0.00011 22.5 0.0 0.00045 20.5 0.0 2.0 2 0 0 2 2 1 1 AAA domain MobB PF03205.14 gi|159040882|ref|YP_001540134.1| - 0.0012 18.7 0.5 0.0038 17.1 0.2 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.6 gi|159040882|ref|YP_001540134.1| - 0.0014 18.6 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|159040882|ref|YP_001540134.1| - 0.0032 17.3 0.1 3.1 7.5 0.0 2.5 1 1 1 2 2 2 2 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|159040882|ref|YP_001540134.1| - 0.0034 17.3 0.0 0.0066 16.4 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|159040882|ref|YP_001540134.1| - 0.004 17.1 0.5 0.77 9.6 0.1 2.4 2 0 0 2 2 2 1 NTPase cobW PF02492.19 gi|159040882|ref|YP_001540134.1| - 0.0056 16.3 2.0 0.043 13.4 2.0 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|159040882|ref|YP_001540134.1| - 0.0056 16.0 0.0 0.013 14.8 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|159040882|ref|YP_001540134.1| - 0.0061 16.7 0.0 0.014 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|159040882|ref|YP_001540134.1| - 0.0064 15.5 0.1 0.018 14.1 0.0 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|159040882|ref|YP_001540134.1| - 0.0076 15.6 0.1 0.55 9.5 0.1 2.3 1 1 0 1 1 1 1 ATPase MipZ DUF2067 PF09840.9 gi|159040882|ref|YP_001540134.1| - 0.0078 15.8 2.1 0.33 10.5 0.1 3.1 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2067) MMR_HSR1 PF01926.23 gi|159040882|ref|YP_001540134.1| - 0.0082 16.2 0.2 0.031 14.4 0.2 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|159040882|ref|YP_001540134.1| - 0.014 15.2 1.1 0.14 11.9 0.5 2.5 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|159040882|ref|YP_001540134.1| - 0.016 15.6 0.3 0.22 11.9 0.1 2.6 2 1 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|159040882|ref|YP_001540134.1| - 0.026 14.8 0.1 0.092 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain PFOR_II PF17147.4 gi|159040882|ref|YP_001540134.1| - 0.026 14.8 0.1 0.3 11.4 0.0 2.4 1 1 1 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II ParA PF10609.9 gi|159040882|ref|YP_001540134.1| - 0.029 13.8 0.1 0.045 13.2 0.1 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase PduV-EutP PF10662.9 gi|159040882|ref|YP_001540134.1| - 0.036 13.8 0.3 3 7.6 0.1 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|159040882|ref|YP_001540134.1| - 0.039 13.7 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|159040882|ref|YP_001540134.1| - 0.057 13.9 0.6 0.33 11.4 0.6 2.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|159040882|ref|YP_001540134.1| - 0.057 13.9 0.2 0.39 11.2 0.0 2.3 2 1 0 2 2 2 0 ABC transporter AAA_18 PF13238.6 gi|159040882|ref|YP_001540134.1| - 0.061 13.9 0.9 0.53 10.8 0.3 2.5 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|159040882|ref|YP_001540134.1| - 0.073 13.5 0.2 14 6.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Thymidylate_kin PF02223.17 gi|159040882|ref|YP_001540134.1| - 0.1 12.3 0.3 0.66 9.6 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase DUF1611 PF07755.11 gi|159040882|ref|YP_001540134.1| - 0.11 11.7 2.2 0.37 10.0 0.3 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain G-alpha PF00503.20 gi|159040882|ref|YP_001540134.1| - 0.13 11.3 0.0 0.39 9.8 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit ATP_bind_1 PF03029.17 gi|159040882|ref|YP_001540134.1| - 0.16 11.8 0.1 0.55 10.0 0.1 1.9 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|159040882|ref|YP_001540134.1| - 0.2 11.2 0.6 1.2 8.7 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|159040882|ref|YP_001540134.1| - 0.27 11.6 2.8 1 9.8 0.8 3.0 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|159040883|ref|YP_001540135.1| - 8.5e-60 202.0 0.0 1.5e-59 201.2 0.0 1.3 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.6 gi|159040883|ref|YP_001540135.1| - 2.6e-05 23.9 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|159040883|ref|YP_001540135.1| - 0.00037 19.9 0.0 0.00058 19.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|159040883|ref|YP_001540135.1| - 0.012 14.9 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 Rad51 GvpD PF07088.11 gi|159040883|ref|YP_001540135.1| - 0.027 13.1 0.1 0.22 10.1 0.0 2.0 2 0 0 2 2 2 0 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|159040883|ref|YP_001540135.1| - 0.12 12.1 0.0 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|159040883|ref|YP_001540135.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|159040884|ref|YP_001540136.1| - 3.6e-12 45.9 0.0 5.7e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|159040884|ref|YP_001540136.1| - 6.1e-05 23.6 0.0 0.00081 19.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain PIN_5 PF08745.11 gi|159040884|ref|YP_001540136.1| - 0.00051 19.5 0.0 0.0057 16.1 0.0 2.4 3 0 0 3 3 3 1 PINc domain ribonuclease AAA_33 PF13671.6 gi|159040884|ref|YP_001540136.1| - 0.00079 19.6 0.0 0.044 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|159040884|ref|YP_001540136.1| - 0.0035 17.8 0.0 0.15 12.5 0.0 2.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|159040884|ref|YP_001540136.1| - 0.004 16.4 0.0 0.0083 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|159040884|ref|YP_001540136.1| - 0.0048 17.2 0.0 0.015 15.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|159040884|ref|YP_001540136.1| - 0.0084 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein KTI12 PF08433.10 gi|159040884|ref|YP_001540136.1| - 0.012 15.1 0.0 0.031 13.7 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|159040884|ref|YP_001540136.1| - 0.013 15.8 0.0 0.021 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|159040884|ref|YP_001540136.1| - 0.014 15.4 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|159040884|ref|YP_001540136.1| - 0.018 15.1 0.0 0.053 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|159040884|ref|YP_001540136.1| - 0.018 14.8 0.0 0.087 12.6 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|159040884|ref|YP_001540136.1| - 0.019 14.9 0.0 0.042 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|159040884|ref|YP_001540136.1| - 0.036 13.8 0.1 0.066 13.0 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|159040884|ref|YP_001540136.1| - 0.037 14.3 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|159040884|ref|YP_001540136.1| - 0.043 13.6 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|159040884|ref|YP_001540136.1| - 0.047 13.3 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|159040884|ref|YP_001540136.1| - 0.065 13.0 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|159040884|ref|YP_001540136.1| - 0.087 12.7 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.6 gi|159040884|ref|YP_001540136.1| - 0.096 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MeaB PF03308.16 gi|159040884|ref|YP_001540136.1| - 0.099 11.6 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DnaB_C PF03796.15 gi|159040884|ref|YP_001540136.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain NACHT PF05729.12 gi|159040884|ref|YP_001540136.1| - 0.12 12.3 0.1 0.27 11.2 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|159040884|ref|YP_001540136.1| - 0.13 12.0 0.1 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF364 PF04016.12 gi|159040885|ref|YP_001540137.1| - 2.4e-42 144.0 0.0 3.5e-42 143.4 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|159040885|ref|YP_001540137.1| - 2.8e-22 78.7 1.1 1.9e-21 76.1 0.7 2.1 2 0 0 2 2 2 1 Putative heavy-metal chelation THF_DHG_CYH_C PF02882.19 gi|159040885|ref|YP_001540137.1| - 0.037 13.3 0.1 0.16 11.3 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Urease_linker PF18473.1 gi|159040885|ref|YP_001540137.1| - 0.097 12.6 0.2 0.25 11.2 0.2 1.7 1 0 0 1 1 1 0 Urease subunit beta-alpha linker domain Thymidylate_kin PF02223.17 gi|159040886|ref|YP_001540138.1| - 3.3e-45 154.0 0.0 3.8e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|159040886|ref|YP_001540138.1| - 1.2e-05 25.3 0.0 0.00032 20.6 0.0 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|159040886|ref|YP_001540138.1| - 4.7e-05 23.9 0.1 0.00038 21.0 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159040886|ref|YP_001540138.1| - 0.011 16.1 0.0 0.012 16.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|159040886|ref|YP_001540138.1| - 0.016 14.2 0.0 0.052 12.5 0.0 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|159040886|ref|YP_001540138.1| - 0.087 13.0 0.0 1.1 9.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|159040886|ref|YP_001540138.1| - 0.088 13.2 0.0 20 5.6 0.0 2.6 2 1 0 3 3 3 0 AAA domain SKI PF01202.22 gi|159040886|ref|YP_001540138.1| - 0.11 12.6 0.0 16 5.6 0.0 2.5 2 1 0 2 2 2 0 Shikimate kinase DUF948 PF06103.11 gi|159040887|ref|YP_001540139.1| - 0.012 15.9 4.4 3.6 7.9 0.3 4.2 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) DegS PF05384.11 gi|159040887|ref|YP_001540139.1| - 0.03 13.8 0.9 0.12 11.9 0.0 2.3 2 1 0 2 2 2 0 Sensor protein DegS Lzipper-MIP1 PF14389.6 gi|159040887|ref|YP_001540139.1| - 0.15 12.4 0.1 11 6.4 0.0 2.6 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DASH_Duo1 PF08651.10 gi|159040887|ref|YP_001540139.1| - 0.15 11.8 0.2 0.15 11.8 0.2 3.2 4 0 0 4 4 4 0 DASH complex subunit Duo1 BLOC1_2 PF10046.9 gi|159040887|ref|YP_001540139.1| - 5 7.5 12.8 2.4 8.5 0.5 4.3 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.27 gi|159040888|ref|YP_001540140.1| - 6e-32 111.0 0.0 8.8e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|159040888|ref|YP_001540140.1| - 6.2e-08 32.3 0.2 2.5e-07 30.4 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|159040888|ref|YP_001540140.1| - 7e-08 32.6 0.0 0.0017 18.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|159040888|ref|YP_001540140.1| - 0.00021 20.9 0.1 0.00042 20.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|159040888|ref|YP_001540140.1| - 0.00025 20.8 0.0 0.2 11.4 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|159040888|ref|YP_001540140.1| - 0.00025 21.0 0.0 0.00049 20.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|159040888|ref|YP_001540140.1| - 0.0041 17.4 0.6 0.032 14.5 0.4 2.6 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|159040888|ref|YP_001540140.1| - 0.0072 16.7 0.3 0.013 15.9 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|159040888|ref|YP_001540140.1| - 0.011 14.8 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|159040888|ref|YP_001540140.1| - 0.013 16.0 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|159040888|ref|YP_001540140.1| - 0.016 14.8 0.2 0.051 13.2 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|159040888|ref|YP_001540140.1| - 0.022 14.9 0.0 0.029 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|159040888|ref|YP_001540140.1| - 0.024 13.8 0.0 0.024 13.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NTPase_1 PF03266.15 gi|159040888|ref|YP_001540140.1| - 0.044 13.7 1.2 5.3 6.9 0.1 3.0 1 1 1 3 3 3 0 NTPase MutS_V PF00488.21 gi|159040888|ref|YP_001540140.1| - 0.051 13.6 0.2 3.4 7.7 0.0 2.3 2 0 0 2 2 2 0 MutS domain V cobW PF02492.19 gi|159040888|ref|YP_001540140.1| - 0.052 13.1 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|159040888|ref|YP_001540140.1| - 0.057 13.3 0.9 0.093 12.6 0.0 1.7 2 1 0 2 2 1 0 ATPase domain predominantly from Archaea CbiA PF01656.23 gi|159040888|ref|YP_001540140.1| - 0.06 13.4 0.0 0.087 12.9 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|159040888|ref|YP_001540140.1| - 0.069 13.7 0.0 0.15 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|159040888|ref|YP_001540140.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|159040888|ref|YP_001540140.1| - 0.1 13.0 0.0 0.3 11.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|159040888|ref|YP_001540140.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|159040888|ref|YP_001540140.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|159040888|ref|YP_001540140.1| - 0.12 12.1 0.0 0.45 10.2 0.0 1.7 1 1 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|159040888|ref|YP_001540140.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|159040888|ref|YP_001540140.1| - 0.14 12.2 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|159040888|ref|YP_001540140.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|159040888|ref|YP_001540140.1| - 0.14 12.5 0.2 3.4 8.1 0.2 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NADHdh PF00146.21 gi|159040889|ref|YP_001540141.1| - 1.2e-76 257.9 24.0 1.5e-76 257.6 24.0 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|159040890|ref|YP_001540142.1| - 2.4e-12 46.1 11.0 4.9e-06 26.1 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|159040890|ref|YP_001540142.1| - 7.8e-11 42.4 18.8 1.5e-08 35.1 9.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159040890|ref|YP_001540142.1| - 4.6e-09 36.3 18.4 3e-07 30.5 8.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|159040890|ref|YP_001540142.1| - 7.7e-09 35.9 0.4 0.0026 18.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|159040890|ref|YP_001540142.1| - 1.3e-08 34.8 5.7 2.2e-08 34.1 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159040890|ref|YP_001540142.1| - 1.4e-08 35.6 2.6 0.0027 18.6 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|159040890|ref|YP_001540142.1| - 5.2e-08 32.6 11.4 0.00012 22.0 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|159040890|ref|YP_001540142.1| - 4.3e-07 29.6 9.4 0.0028 17.7 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159040890|ref|YP_001540142.1| - 1.6e-06 28.1 10.0 6.4e-05 23.0 11.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159040890|ref|YP_001540142.1| - 0.00033 21.1 9.4 0.11 13.1 1.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159040890|ref|YP_001540142.1| - 0.00037 21.0 9.5 0.012 16.1 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|159040890|ref|YP_001540142.1| - 0.00047 20.5 12.6 0.023 15.2 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|159040890|ref|YP_001540142.1| - 0.0012 19.6 16.9 0.16 12.9 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_5 PF12801.7 gi|159040890|ref|YP_001540142.1| - 0.0019 18.1 1.7 0.58 10.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|159040890|ref|YP_001540142.1| - 0.064 14.0 9.3 5.8 7.7 0.2 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|159040890|ref|YP_001540142.1| - 0.23 11.6 11.4 0.54 10.5 2.3 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|159040890|ref|YP_001540142.1| - 5.4 7.9 10.4 3.7 8.5 1.9 2.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain zf-C2HC_2 PF13913.6 gi|159040891|ref|YP_001540143.1| - 0.00014 21.6 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.6 gi|159040891|ref|YP_001540143.1| - 0.0014 19.3 0.1 0.003 18.3 0.1 1.6 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|159040891|ref|YP_001540143.1| - 0.033 14.7 0.1 0.055 13.9 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|159040891|ref|YP_001540143.1| - 0.033 14.5 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_11 PF16622.5 gi|159040891|ref|YP_001540143.1| - 0.045 13.5 0.1 0.06 13.1 0.1 1.2 1 0 0 1 1 1 0 zinc-finger C2H2-type DUF2225 PF09986.9 gi|159040891|ref|YP_001540143.1| - 0.046 13.4 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-C2H2_9 PF16293.5 gi|159040891|ref|YP_001540143.1| - 0.078 12.8 0.0 0.12 12.2 0.0 1.3 1 1 0 1 1 1 0 C2H2 type zinc-finger (1 copy) Rad50_zn_hook PF04423.14 gi|159040891|ref|YP_001540143.1| - 0.49 10.3 1.7 0.69 9.8 0.4 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif Citrate_synt PF00285.21 gi|159040892|ref|YP_001540144.1| - 3.5e-128 427.7 0.0 4e-128 427.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain SIS PF01380.22 gi|159040894|ref|YP_001540146.1| - 7.8e-17 61.3 0.0 1.3e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|159040894|ref|YP_001540146.1| - 2.7e-09 37.1 3.1 1.9e-05 24.7 1.9 2.4 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|159040894|ref|YP_001540146.1| - 0.014 15.3 0.9 0.56 10.0 0.0 2.3 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Phage_Mu_Gp45 PF06890.12 gi|159040894|ref|YP_001540146.1| - 0.082 12.6 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein LigB PF02900.18 gi|159040894|ref|YP_001540146.1| - 0.12 11.4 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase AdoMet_dc PF02675.15 gi|159040895|ref|YP_001540147.1| - 1.5e-36 124.8 0.2 1.8e-36 124.6 0.2 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase RseC_MucC PF04246.12 gi|159040896|ref|YP_001540148.1| - 2.2 8.2 4.8 0.63 10.0 1.2 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Ribosomal_L24e PF01246.20 gi|159040897|ref|YP_001540149.1| - 7e-24 83.8 0.8 7.7e-24 83.7 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|159040897|ref|YP_001540149.1| - 0.00016 21.6 0.1 0.00025 20.9 0.1 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif NTPase_1 PF03266.15 gi|159040898|ref|YP_001540150.1| - 9.1e-43 146.1 0.1 1e-42 145.9 0.1 1.0 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|159040898|ref|YP_001540150.1| - 1.6e-05 24.8 0.0 4e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|159040898|ref|YP_001540150.1| - 2.1e-05 24.8 0.9 0.0008 19.7 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|159040898|ref|YP_001540150.1| - 0.00013 22.4 0.8 0.00018 21.9 0.2 1.4 2 0 0 2 2 1 1 AAA ATPase domain MeaB PF03308.16 gi|159040898|ref|YP_001540150.1| - 0.00025 20.2 0.7 0.00036 19.6 0.7 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|159040898|ref|YP_001540150.1| - 0.00037 21.0 0.2 0.0005 20.6 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|159040898|ref|YP_001540150.1| - 0.00046 20.2 0.0 0.0015 18.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|159040898|ref|YP_001540150.1| - 0.00048 20.6 0.0 0.00074 20.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|159040898|ref|YP_001540150.1| - 0.00058 19.6 0.1 0.036 13.8 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|159040898|ref|YP_001540150.1| - 0.00092 19.2 0.2 0.0019 18.1 0.1 1.5 2 0 0 2 2 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|159040898|ref|YP_001540150.1| - 0.0032 17.4 0.1 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 NACHT domain MobB PF03205.14 gi|159040898|ref|YP_001540150.1| - 0.0033 17.3 0.1 0.0056 16.6 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|159040898|ref|YP_001540150.1| - 0.0034 17.7 1.1 0.0084 16.4 0.3 1.9 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|159040898|ref|YP_001540150.1| - 0.0068 16.2 0.2 0.012 15.4 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|159040898|ref|YP_001540150.1| - 0.009 16.3 0.1 0.013 15.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|159040898|ref|YP_001540150.1| - 0.0092 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.12 gi|159040898|ref|YP_001540150.1| - 0.014 15.2 0.0 0.08 12.7 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MMR_HSR1 PF01926.23 gi|159040898|ref|YP_001540150.1| - 0.021 14.9 0.0 0.044 13.9 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|159040898|ref|YP_001540150.1| - 0.023 14.8 0.1 0.036 14.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|159040898|ref|YP_001540150.1| - 0.024 13.8 0.1 0.046 12.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|159040898|ref|YP_001540150.1| - 0.026 14.3 0.4 0.051 13.4 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|159040898|ref|YP_001540150.1| - 0.035 13.4 0.1 1.4 8.2 0.0 2.0 2 0 0 2 2 2 0 KaiC KdpD PF02702.17 gi|159040898|ref|YP_001540150.1| - 0.064 12.7 0.1 0.17 11.4 0.1 1.8 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain SRP54 PF00448.22 gi|159040898|ref|YP_001540150.1| - 0.066 12.8 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KAP_NTPase PF07693.14 gi|159040898|ref|YP_001540150.1| - 0.067 12.4 0.0 0.085 12.1 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_7 PF12775.7 gi|159040898|ref|YP_001540150.1| - 0.079 12.5 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region APS_kinase PF01583.20 gi|159040898|ref|YP_001540150.1| - 0.089 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_17 PF13207.6 gi|159040898|ref|YP_001540150.1| - 0.09 13.2 0.1 0.46 10.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|159040898|ref|YP_001540150.1| - 0.092 12.8 0.3 0.55 10.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|159040898|ref|YP_001540150.1| - 0.093 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|159040898|ref|YP_001540150.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|159040898|ref|YP_001540150.1| - 0.11 12.6 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|159040898|ref|YP_001540150.1| - 0.12 12.1 0.2 0.23 11.2 0.1 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|159040898|ref|YP_001540150.1| - 0.13 11.5 0.1 0.18 11.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Thymidylate_kin PF02223.17 gi|159040898|ref|YP_001540150.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase T2SSE PF00437.20 gi|159040898|ref|YP_001540150.1| - 0.14 11.2 0.1 0.24 10.4 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|159040898|ref|YP_001540150.1| - 0.14 11.9 1.0 0.19 11.5 0.1 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain DUF2478 PF10649.9 gi|159040898|ref|YP_001540150.1| - 0.17 11.5 0.0 0.2 11.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) Viral_helicase1 PF01443.18 gi|159040898|ref|YP_001540150.1| - 0.19 11.5 0.1 0.32 10.7 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MFS_1 PF07690.16 gi|159040899|ref|YP_001540151.1| - 5.9e-18 64.9 35.2 1.1e-11 44.3 14.4 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily PSI_PsaE PF02427.17 gi|159040899|ref|YP_001540151.1| - 0.099 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE Dynein_AAA_lid PF17852.1 gi|159040899|ref|YP_001540151.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Dynein heavy chain AAA lid domain ROK PF00480.20 gi|159040900|ref|YP_001540152.1| - 3.6e-60 203.9 0.1 4.1e-60 203.7 0.1 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|159040900|ref|YP_001540152.1| - 0.0013 18.3 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Ribosomal_L23 PF00276.20 gi|159040901|ref|YP_001540153.1| - 5.1e-14 52.4 5.6 2.9e-13 50.0 5.6 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 NTNH_C PF08470.10 gi|159040901|ref|YP_001540153.1| - 0.01 15.7 1.0 0.061 13.2 0.9 1.9 1 1 0 1 1 1 0 Nontoxic nonhaemagglutinin C-terminal ZnuA PF01297.17 gi|159040901|ref|YP_001540153.1| - 0.03 13.8 0.4 0.034 13.6 0.4 1.0 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic DNA_mis_repair PF01119.19 gi|159040901|ref|YP_001540153.1| - 0.037 13.7 0.3 0.19 11.4 0.1 1.8 2 0 0 2 2 2 0 DNA mismatch repair protein, C-terminal domain Ribosomal_L4 PF00573.22 gi|159040902|ref|YP_001540154.1| - 1.1e-42 145.9 0.8 1.4e-42 145.6 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|159040903|ref|YP_001540155.1| - 1.8e-71 241.1 0.9 3.2e-71 240.2 0.9 1.3 1 1 0 1 1 1 1 Ribosomal protein L3 DEAD PF00270.29 gi|159040904|ref|YP_001540156.1| - 1.3e-23 83.6 0.0 4e-23 82.1 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|159040904|ref|YP_001540156.1| - 1.1e-14 54.8 0.3 8.6e-14 51.9 0.2 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|159040904|ref|YP_001540156.1| - 3.4e-09 37.0 0.0 7.7e-08 32.7 0.0 3.1 3 1 0 3 3 3 1 Helicase conserved C-terminal domain HHH_2 PF12826.7 gi|159040904|ref|YP_001540156.1| - 1.5e-08 34.6 0.1 5.9e-08 32.7 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif ResIII PF04851.15 gi|159040904|ref|YP_001540156.1| - 1.6e-07 31.5 0.0 3.1e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|159040904|ref|YP_001540156.1| - 1.3e-06 28.1 0.1 9.9e-06 25.3 0.1 2.5 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|159040904|ref|YP_001540156.1| - 6.1e-06 25.8 0.4 0.021 14.7 0.1 3.2 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|159040904|ref|YP_001540156.1| - 0.0028 18.0 0.2 0.043 14.2 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain SNF2_N PF00176.23 gi|159040904|ref|YP_001540156.1| - 0.015 14.0 0.0 0.022 13.5 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain RNA_pol_A_CTD PF03118.15 gi|159040904|ref|YP_001540156.1| - 0.021 14.5 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain HHH_3 PF12836.7 gi|159040904|ref|YP_001540156.1| - 0.035 14.4 0.1 0.15 12.4 0.0 2.1 1 1 1 2 2 2 0 Helix-hairpin-helix motif Sec63 PF02889.16 gi|159040904|ref|YP_001540156.1| - 0.04 13.1 0.0 0.067 12.3 0.0 1.4 1 0 0 1 1 1 0 Sec63 Brl domain DUF4332 PF14229.6 gi|159040904|ref|YP_001540156.1| - 0.077 13.2 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) SOCS_box PF07525.16 gi|159040904|ref|YP_001540156.1| - 0.19 12.1 0.2 0.58 10.6 0.2 1.8 1 0 0 1 1 1 0 SOCS box AMMECR1 PF01871.17 gi|159040905|ref|YP_001540157.1| - 2.1e-15 56.7 0.0 2.9e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 Ribosomal_L7Ae PF01248.26 gi|159040906|ref|YP_001540158.1| - 9.8e-17 60.5 0.0 1.2e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ANF_receptor PF01094.28 gi|159040906|ref|YP_001540158.1| - 0.044 12.9 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region KH_2 PF07650.17 gi|159040907|ref|YP_001540159.1| - 1.2e-12 47.5 0.6 1.2e-08 34.7 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|159040907|ref|YP_001540159.1| - 1e-11 44.7 0.2 2.1e-11 43.8 0.2 1.5 1 0 0 1 1 1 1 NusA-like KH domain KH_1 PF00013.29 gi|159040907|ref|YP_001540159.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 KH domain Ribosom_S12_S23 PF00164.25 gi|159040908|ref|YP_001540160.1| - 6.6e-37 125.6 1.0 3.3e-23 81.5 0.1 2.4 2 0 0 2 2 2 2 Ribosomal protein S12/S23 Intein_splicing PF14890.6 gi|159040908|ref|YP_001540160.1| - 9.7e-12 45.0 0.0 1.4e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|159040908|ref|YP_001540160.1| - 4.5e-05 23.7 1.5 0.0005 20.3 0.3 3.0 2 1 0 2 2 2 1 LAGLIDADG-like domain TrmB PF01978.19 gi|159040908|ref|YP_001540160.1| - 0.1 12.5 0.4 4.8 7.2 0.0 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_IS630 PF01710.16 gi|159040908|ref|YP_001540160.1| - 0.15 12.2 0.1 0.34 11.0 0.1 1.5 1 0 0 1 1 1 0 Transposase Aminotran_1_2 PF00155.21 gi|159040909|ref|YP_001540161.1| - 3.7e-78 263.2 0.0 4.2e-78 263.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|159040909|ref|YP_001540161.1| - 8.2e-13 48.4 0.0 1.2e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|159040909|ref|YP_001540161.1| - 2.3e-09 36.7 0.0 6.3e-09 35.3 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|159040909|ref|YP_001540161.1| - 4.7e-08 32.0 0.0 1.3e-07 30.5 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|159040909|ref|YP_001540161.1| - 0.00051 19.4 0.0 0.0008 18.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|159040909|ref|YP_001540161.1| - 0.0089 14.8 0.0 0.015 14.0 0.0 1.3 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain gag-asp_proteas PF13975.6 gi|159040910|ref|YP_001540162.1| - 6.5e-09 36.2 0.1 8.8e-09 35.8 0.1 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|159040910|ref|YP_001540162.1| - 4.4e-07 30.4 0.0 5.9e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|159040910|ref|YP_001540162.1| - 0.0015 18.8 0.1 0.003 17.8 0.1 1.7 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.10 gi|159040910|ref|YP_001540162.1| - 0.023 14.5 0.0 0.065 13.0 0.0 1.6 1 1 0 1 1 1 0 Aspartyl protease HSBP1 PF06825.12 gi|159040911|ref|YP_001540163.1| - 4.9e-10 39.1 27.0 0.00055 19.7 1.3 6.0 1 1 5 6 6 6 4 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|159040911|ref|YP_001540163.1| - 5.3e-09 36.2 10.5 8.3e-05 22.8 2.2 3.4 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 gi|159040911|ref|YP_001540163.1| - 8.7e-08 32.3 11.9 0.00052 20.1 4.0 2.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|159040911|ref|YP_001540163.1| - 1.9e-06 28.2 15.8 0.056 13.9 3.9 4.3 1 1 2 3 3 3 3 Nucleopolyhedrovirus P10 protein ApoLp-III PF07464.11 gi|159040911|ref|YP_001540163.1| - 2.4e-06 27.7 2.6 3.7e-06 27.1 2.0 1.6 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.18 gi|159040911|ref|YP_001540163.1| - 4.8e-06 26.6 7.6 1.4e-05 25.0 7.5 1.9 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain AAA_13 PF13166.6 gi|159040911|ref|YP_001540163.1| - 5.8e-06 25.3 9.6 7.2e-06 24.9 9.6 1.1 1 0 0 1 1 1 1 AAA domain Mer2 PF09074.10 gi|159040911|ref|YP_001540163.1| - 5.9e-06 26.2 13.5 7.6e-06 25.9 13.5 1.2 1 0 0 1 1 1 1 Mer2 Mt_ATP-synt_D PF05873.12 gi|159040911|ref|YP_001540163.1| - 1.8e-05 24.7 2.7 0.079 12.8 0.4 2.3 1 1 1 2 2 2 2 ATP synthase D chain, mitochondrial (ATP5H) IFT57 PF10498.9 gi|159040911|ref|YP_001540163.1| - 3.5e-05 23.0 8.5 3.5e-05 23.0 8.5 1.5 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|159040911|ref|YP_001540163.1| - 4.4e-05 23.5 11.3 0.017 15.2 1.8 2.7 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|159040911|ref|YP_001540163.1| - 4.7e-05 22.9 4.4 5.5e-05 22.7 4.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Phage_Mu_Gam PF07352.12 gi|159040911|ref|YP_001540163.1| - 6.5e-05 22.9 7.1 0.018 14.9 1.5 2.5 1 1 1 2 2 2 2 Bacteriophage Mu Gam like protein CdvA PF18822.1 gi|159040911|ref|YP_001540163.1| - 7.4e-05 22.6 14.6 0.0015 18.4 5.5 3.1 2 1 1 3 3 2 2 CdvA-like coiled-coil domain Transcrip_act PF04949.13 gi|159040911|ref|YP_001540163.1| - 8.5e-05 22.5 13.9 0.0039 17.1 4.1 2.9 1 1 2 3 3 3 1 Transcriptional activator FliD_C PF07195.12 gi|159040911|ref|YP_001540163.1| - 9.3e-05 22.0 8.9 0.021 14.3 1.8 2.7 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus RmuC PF02646.16 gi|159040911|ref|YP_001540163.1| - 0.00011 21.4 4.5 0.11 11.6 0.8 2.4 1 1 0 2 2 2 2 RmuC family KxDL PF10241.9 gi|159040911|ref|YP_001540163.1| - 0.00015 21.9 11.0 0.18 12.1 1.6 3.6 1 1 2 3 3 3 2 Uncharacterized conserved protein DUF3584 PF12128.8 gi|159040911|ref|YP_001540163.1| - 0.0004 18.1 6.1 0.00051 17.7 6.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Spectrin PF00435.21 gi|159040911|ref|YP_001540163.1| - 0.00047 20.6 7.7 0.16 12.5 3.1 3.1 1 1 1 2 2 2 2 Spectrin repeat T3SSipB PF16535.5 gi|159040911|ref|YP_001540163.1| - 0.0011 19.5 4.6 0.03 14.8 0.9 2.2 1 1 1 2 2 2 2 Type III cell invasion protein SipB YtxH PF12732.7 gi|159040911|ref|YP_001540163.1| - 0.0011 19.5 2.4 0.082 13.4 2.2 2.7 1 1 0 1 1 1 1 YtxH-like protein DUF4455 PF14643.6 gi|159040911|ref|YP_001540163.1| - 0.0014 17.4 5.1 0.0025 16.5 5.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4455) DUF16 PF01519.16 gi|159040911|ref|YP_001540163.1| - 0.0017 18.8 14.9 0.026 15.0 2.9 2.4 1 1 1 2 2 2 1 Protein of unknown function DUF16 ABC_tran_CTD PF16326.5 gi|159040911|ref|YP_001540163.1| - 0.0019 18.4 4.9 0.1 12.9 2.7 3.6 1 1 3 4 4 3 2 ABC transporter C-terminal domain TssO PF17561.2 gi|159040911|ref|YP_001540163.1| - 0.0021 18.2 10.1 0.44 10.7 2.2 2.4 1 1 1 2 2 2 2 Type VI secretion system, TssO CorA PF01544.18 gi|159040911|ref|YP_001540163.1| - 0.0024 17.3 18.2 0.013 14.9 11.3 2.5 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein DUF3450 PF11932.8 gi|159040911|ref|YP_001540163.1| - 0.0026 17.1 9.7 0.028 13.7 3.5 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.15 gi|159040911|ref|YP_001540163.1| - 0.0026 17.4 8.9 0.0038 16.8 8.9 1.4 1 1 0 1 1 1 1 Exonuclease VII, large subunit HR1 PF02185.16 gi|159040911|ref|YP_001540163.1| - 0.0031 17.6 16.8 0.7 10.0 1.2 4.0 1 1 2 3 3 3 1 Hr1 repeat DUF4515 PF14988.6 gi|159040911|ref|YP_001540163.1| - 0.0043 16.9 7.5 0.28 11.0 0.3 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4515) Tektin PF03148.14 gi|159040911|ref|YP_001540163.1| - 0.0045 15.8 16.3 0.15 10.8 4.4 2.1 1 1 1 2 2 2 2 Tektin family Prefoldin_2 PF01920.20 gi|159040911|ref|YP_001540163.1| - 0.0054 16.7 11.2 0.47 10.4 1.8 3.6 2 1 2 4 4 3 2 Prefoldin subunit EspB PF05802.11 gi|159040911|ref|YP_001540163.1| - 0.0055 16.7 8.8 0.22 11.5 2.4 2.4 1 1 1 2 2 2 2 Enterobacterial EspB protein YlqD PF11068.8 gi|159040911|ref|YP_001540163.1| - 0.0056 17.1 5.3 0.0056 17.1 5.3 2.6 1 1 1 3 3 2 1 YlqD protein DUF883 PF05957.13 gi|159040911|ref|YP_001540163.1| - 0.0068 17.0 6.5 1.2 9.8 2.7 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4041 PF13250.6 gi|159040911|ref|YP_001540163.1| - 0.007 16.2 12.8 0.48 10.3 0.1 4.5 2 1 3 5 5 4 1 Domain of unknown function (DUF4041) YjcZ PF13990.6 gi|159040911|ref|YP_001540163.1| - 0.0072 15.7 2.0 0.24 10.7 0.8 2.1 1 1 1 2 2 2 1 YjcZ-like protein KMP11 PF03037.16 gi|159040911|ref|YP_001540163.1| - 0.0086 16.8 4.1 0.71 10.7 1.5 3.2 1 1 1 2 2 2 1 Kinetoplastid membrane protein 11 HSCB_C PF07743.13 gi|159040911|ref|YP_001540163.1| - 0.0095 16.4 10.5 85 3.7 10.3 3.5 1 1 0 1 1 1 0 HSCB C-terminal oligomerisation domain Spc7 PF08317.11 gi|159040911|ref|YP_001540163.1| - 0.0096 14.8 7.0 0.012 14.5 7.0 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein HMMR_N PF15905.5 gi|159040911|ref|YP_001540163.1| - 0.0099 15.4 7.2 0.015 14.7 7.2 1.4 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Phasin PF05597.11 gi|159040911|ref|YP_001540163.1| - 0.011 15.8 10.7 0.53 10.3 8.7 2.9 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) TMPIT PF07851.13 gi|159040911|ref|YP_001540163.1| - 0.011 15.0 4.2 0.035 13.4 4.2 1.8 1 1 0 1 1 1 0 TMPIT-like protein Erythro-docking PF09277.11 gi|159040911|ref|YP_001540163.1| - 0.012 15.5 5.1 1.7 8.6 0.0 4.2 2 1 0 3 3 2 0 Erythronolide synthase, docking Fzo_mitofusin PF04799.13 gi|159040911|ref|YP_001540163.1| - 0.012 15.2 5.9 0.41 10.2 1.5 2.4 1 1 1 2 2 2 0 fzo-like conserved region DUF684 PF05075.14 gi|159040911|ref|YP_001540163.1| - 0.013 14.5 3.2 0.3 10.0 0.1 2.8 1 1 2 4 4 4 0 Protein of unknown function (DUF684) DUF5082 PF16888.5 gi|159040911|ref|YP_001540163.1| - 0.013 15.8 9.9 0.053 13.8 9.9 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) DUF4795 PF16043.5 gi|159040911|ref|YP_001540163.1| - 0.014 15.0 17.5 0.014 15.0 5.8 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) BLOC1_2 PF10046.9 gi|159040911|ref|YP_001540163.1| - 0.014 15.7 9.3 0.038 14.3 4.4 2.8 1 1 2 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|159040911|ref|YP_001540163.1| - 0.015 15.5 18.6 0.11 12.8 6.4 3.6 1 1 2 3 3 3 0 Haemolysin XhlA Rad50_zn_hook PF04423.14 gi|159040911|ref|YP_001540163.1| - 0.016 15.1 2.3 36 4.3 0.1 4.5 2 1 1 4 4 4 0 Rad50 zinc hook motif TACC_C PF05010.14 gi|159040911|ref|YP_001540163.1| - 0.018 14.9 8.7 0.2 11.4 6.8 2.7 1 1 2 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal AAA_32 PF13654.6 gi|159040911|ref|YP_001540163.1| - 0.019 13.8 9.0 0.26 10.0 1.1 2.0 1 1 1 2 2 2 0 AAA domain Muted PF14942.6 gi|159040911|ref|YP_001540163.1| - 0.02 15.3 10.6 0.016 15.6 8.2 2.1 1 1 1 2 2 1 0 Organelle biogenesis, Muted-like protein DUF3782 PF12644.7 gi|159040911|ref|YP_001540163.1| - 0.021 14.9 6.9 15 5.8 6.1 3.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) EDR1 PF14381.6 gi|159040911|ref|YP_001540163.1| - 0.022 14.5 1.9 0.037 13.7 1.4 1.6 1 1 1 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 DHR10 PF18595.1 gi|159040911|ref|YP_001540163.1| - 0.023 14.7 11.1 0.43 10.7 0.9 3.2 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain MbeD_MobD PF04899.12 gi|159040911|ref|YP_001540163.1| - 0.023 14.8 8.3 1.2 9.3 0.3 4.1 2 1 2 4 4 3 0 MbeD/MobD like APG17 PF04108.12 gi|159040911|ref|YP_001540163.1| - 0.024 13.8 9.8 0.2 10.7 9.8 2.2 1 1 0 1 1 1 0 Autophagy protein Apg17 COG5 PF10392.9 gi|159040911|ref|YP_001540163.1| - 0.024 14.8 5.9 0.62 10.2 0.8 2.6 1 1 1 2 2 2 0 Golgi transport complex subunit 5 GAS PF13851.6 gi|159040911|ref|YP_001540163.1| - 0.025 13.9 9.9 0.034 13.5 9.2 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF848 PF05852.11 gi|159040911|ref|YP_001540163.1| - 0.026 14.6 13.9 0.37 10.9 1.6 2.2 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Snapin_Pallidin PF14712.6 gi|159040911|ref|YP_001540163.1| - 0.027 14.9 13.2 0.24 11.9 8.2 2.8 1 1 1 2 2 2 0 Snapin/Pallidin RPW8 PF05659.11 gi|159040911|ref|YP_001540163.1| - 0.028 14.1 12.8 1.7 8.3 0.7 3.9 1 1 2 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 HAP1_N PF04849.13 gi|159040911|ref|YP_001540163.1| - 0.034 13.3 11.9 0.75 8.9 11.0 2.4 1 1 0 1 1 1 0 HAP1 N-terminal conserved region DUF2203 PF09969.9 gi|159040911|ref|YP_001540163.1| - 0.034 14.8 6.7 0.38 11.5 0.7 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) YkyA PF10368.9 gi|159040911|ref|YP_001540163.1| - 0.037 13.7 8.2 0.13 11.9 7.2 2.0 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Lipoprotein_7 PF01540.16 gi|159040911|ref|YP_001540163.1| - 0.038 13.3 7.0 0.82 8.9 5.2 1.9 1 1 1 2 2 2 0 Adhesin lipoprotein Trimer_CC PF08954.11 gi|159040911|ref|YP_001540163.1| - 0.055 13.0 12.3 3.8 7.1 0.4 5.1 1 1 4 5 5 5 0 Trimerisation motif ECH_2 PF16113.5 gi|159040911|ref|YP_001540163.1| - 0.056 12.9 0.3 0.072 12.6 0.3 1.3 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF4298 PF14131.6 gi|159040911|ref|YP_001540163.1| - 0.057 13.4 1.7 2.2 8.3 1.6 3.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) MRP-L51 PF10244.9 gi|159040911|ref|YP_001540163.1| - 0.058 13.6 4.8 6.9 7.0 0.1 3.6 1 1 3 4 4 4 0 Mitochondrial ribosomal subunit Sec2p PF06428.11 gi|159040911|ref|YP_001540163.1| - 0.058 13.4 9.5 4.8 7.2 0.2 3.3 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p DUF148 PF02520.17 gi|159040911|ref|YP_001540163.1| - 0.059 13.5 9.4 0.15 12.2 6.3 2.7 1 1 2 3 3 3 0 Domain of unknown function DUF148 Tropomyosin_1 PF12718.7 gi|159040911|ref|YP_001540163.1| - 0.06 13.5 11.8 0.13 12.4 11.8 1.6 1 1 0 1 1 1 0 Tropomyosin like Nup54 PF13874.6 gi|159040911|ref|YP_001540163.1| - 0.073 13.2 11.0 4 7.5 6.8 3.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Atg14 PF10186.9 gi|159040911|ref|YP_001540163.1| - 0.089 11.9 13.3 0.17 10.9 12.9 1.6 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Mst1_SARAH PF11629.8 gi|159040911|ref|YP_001540163.1| - 0.092 12.8 10.8 0.97 9.6 1.6 4.2 2 1 2 4 4 3 0 C terminal SARAH domain of Mst1 SlyX PF04102.12 gi|159040911|ref|YP_001540163.1| - 0.092 13.4 17.6 9.4 6.9 4.1 4.6 1 1 2 3 3 3 0 SlyX Spike_torovirin PF17072.5 gi|159040911|ref|YP_001540163.1| - 0.1 9.7 1.1 0.12 9.5 1.1 1.0 1 0 0 1 1 1 0 Torovirinae spike glycoprotein Phage_GPO PF05929.11 gi|159040911|ref|YP_001540163.1| - 0.11 12.2 4.6 0.092 12.4 2.9 1.7 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase T3SS_basalb_I PF17001.5 gi|159040911|ref|YP_001540163.1| - 0.11 13.1 3.9 4.5 7.9 0.2 3.3 1 1 1 2 2 2 0 Type III secretion basal body protein I, YscI, HrpB, PscI WXG100 PF06013.12 gi|159040911|ref|YP_001540163.1| - 0.11 12.7 2.9 23 5.3 0.1 3.4 1 1 1 2 2 2 0 Proteins of 100 residues with WXG MIS13 PF08202.11 gi|159040911|ref|YP_001540163.1| - 0.12 11.6 9.9 1.2 8.3 9.9 2.2 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Rota_NSP4 PF01452.16 gi|159040911|ref|YP_001540163.1| - 0.12 12.0 12.4 0.023 14.4 6.9 2.0 1 1 1 2 2 2 0 Rotavirus non structural protein Rho_Binding PF08912.11 gi|159040911|ref|YP_001540163.1| - 0.13 13.1 5.1 1.4 9.8 0.9 3.0 1 1 1 2 2 2 0 Rho Binding PLAC9 PF15205.6 gi|159040911|ref|YP_001540163.1| - 0.14 12.6 0.1 5.4 7.5 0.0 2.6 1 1 1 2 2 2 0 Placenta-specific protein 9 DUF4200 PF13863.6 gi|159040911|ref|YP_001540163.1| - 0.16 12.4 10.7 0.27 11.7 9.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) CLZ PF16526.5 gi|159040911|ref|YP_001540163.1| - 0.16 12.3 9.6 0.22 11.9 3.3 3.2 1 1 3 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Hemagglutinin PF00509.18 gi|159040911|ref|YP_001540163.1| - 0.16 10.3 10.7 0.55 8.6 1.6 2.1 1 1 1 2 2 2 0 Haemagglutinin Fib_alpha PF08702.10 gi|159040911|ref|YP_001540163.1| - 0.16 12.1 14.9 0.23 11.6 10.0 2.3 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF2130 PF09903.9 gi|159040911|ref|YP_001540163.1| - 0.18 11.1 8.5 0.19 11.0 4.4 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) TraF_2 PF13729.6 gi|159040911|ref|YP_001540163.1| - 0.18 11.1 9.1 0.9 8.9 3.2 2.2 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Uso1_p115_C PF04871.13 gi|159040911|ref|YP_001540163.1| - 0.19 12.1 4.8 0.75 10.2 2.8 2.3 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Prominin PF05478.11 gi|159040911|ref|YP_001540163.1| - 0.19 9.7 9.8 0.25 9.2 5.1 1.8 1 1 1 2 2 2 0 Prominin Cep57_MT_bd PF06657.13 gi|159040911|ref|YP_001540163.1| - 0.19 12.2 13.8 1 9.9 3.1 4.3 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 DUF745 PF05335.13 gi|159040911|ref|YP_001540163.1| - 0.22 11.2 4.3 0.26 11.0 2.3 1.9 1 1 0 2 2 1 0 Protein of unknown function (DUF745) SHE3 PF17078.5 gi|159040911|ref|YP_001540163.1| - 0.22 11.2 14.1 1.1 8.9 11.6 2.1 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Tho2 PF11262.8 gi|159040911|ref|YP_001540163.1| - 0.23 10.6 6.1 0.18 11.0 4.0 1.7 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 V_ATPase_I PF01496.19 gi|159040911|ref|YP_001540163.1| - 0.24 9.3 8.5 0.52 8.2 8.5 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family HIP1_clath_bdg PF16515.5 gi|159040911|ref|YP_001540163.1| - 0.25 12.0 9.1 3 8.5 6.0 2.7 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Occludin_ELL PF07303.13 gi|159040911|ref|YP_001540163.1| - 0.26 12.0 5.4 6.5 7.5 3.6 3.0 1 1 1 2 2 2 0 Occludin homology domain ISG65-75 PF11727.8 gi|159040911|ref|YP_001540163.1| - 0.26 10.5 4.8 1.2 8.3 5.0 1.8 1 1 0 1 1 1 0 Invariant surface glycoprotein LXG PF04740.12 gi|159040911|ref|YP_001540163.1| - 0.3 10.8 10.1 0.92 9.2 5.3 2.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily Alpha-E PF04168.12 gi|159040911|ref|YP_001540163.1| - 0.3 10.8 6.6 0.14 11.9 0.8 2.3 2 1 1 3 3 2 0 A predicted alpha-helical domain with a conserved ER motif. Peptidase_M75 PF09375.10 gi|159040911|ref|YP_001540163.1| - 0.34 10.4 3.2 1.4 8.3 3.3 2.0 1 1 1 2 2 2 0 Imelysin TPR_MLP1_2 PF07926.12 gi|159040911|ref|YP_001540163.1| - 0.34 11.0 13.0 0.64 10.1 1.9 2.8 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein LidA_Long_CC PF18641.1 gi|159040911|ref|YP_001540163.1| - 0.34 10.9 9.4 32 4.5 8.6 3.0 1 1 0 1 1 1 0 LidA long coiled-coil domain LUC7 PF03194.15 gi|159040911|ref|YP_001540163.1| - 0.35 10.5 11.8 1.7 8.3 10.5 2.2 1 1 1 2 2 2 0 LUC7 N_terminus CREPT PF16566.5 gi|159040911|ref|YP_001540163.1| - 0.35 11.0 8.3 0.42 10.8 7.0 1.8 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Vip3A_N PF12495.8 gi|159040911|ref|YP_001540163.1| - 0.35 10.8 9.5 0.79 9.6 8.8 1.9 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal Cas_Csa4 PF09703.10 gi|159040911|ref|YP_001540163.1| - 0.35 10.1 3.6 0.19 11.0 1.3 1.7 1 1 0 2 2 1 0 CRISPR-associated protein (Cas_Csa4) Allexi_40kDa PF05549.11 gi|159040911|ref|YP_001540163.1| - 0.36 10.3 9.9 0.58 9.6 6.5 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF1910 PF08928.10 gi|159040911|ref|YP_001540163.1| - 0.37 10.8 3.8 0.79 9.7 0.8 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) Packaging_FI PF14000.6 gi|159040911|ref|YP_001540163.1| - 0.4 11.1 6.8 0.17 12.3 2.7 2.2 1 1 1 2 2 2 0 DNA packaging protein FI Fmp27_WPPW PF10359.9 gi|159040911|ref|YP_001540163.1| - 0.47 9.3 11.0 3.7 6.3 10.9 2.0 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FlxA PF14282.6 gi|159040911|ref|YP_001540163.1| - 0.47 10.5 13.8 0.53 10.3 2.5 3.0 2 1 1 3 3 2 0 FlxA-like protein MafB PF06255.13 gi|159040911|ref|YP_001540163.1| - 0.49 9.8 2.9 2.7 7.3 2.3 1.9 1 1 1 2 2 2 0 Neisseria toxin MafB ALMT PF11744.8 gi|159040911|ref|YP_001540163.1| - 0.49 9.2 4.9 0.7 8.7 4.9 1.4 1 1 0 1 1 1 0 Aluminium activated malate transporter LMBR1 PF04791.16 gi|159040911|ref|YP_001540163.1| - 0.54 9.1 5.3 0.58 9.0 5.3 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein WASH_WAHD PF11945.8 gi|159040911|ref|YP_001540163.1| - 0.59 9.6 11.5 0.49 9.9 5.0 2.2 1 1 1 2 2 2 0 WAHD domain of WASH complex ACCA PF03255.14 gi|159040911|ref|YP_001540163.1| - 0.6 10.0 6.1 1.1 9.1 3.0 2.4 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Med9 PF07544.13 gi|159040911|ref|YP_001540163.1| - 0.62 10.2 15.9 4.2 7.5 2.6 4.1 2 1 2 4 4 2 0 RNA polymerase II transcription mediator complex subunit 9 CC2-LZ PF16516.5 gi|159040911|ref|YP_001540163.1| - 0.67 10.4 9.1 0.41 11.0 1.6 2.6 2 1 1 3 3 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Prefoldin_3 PF13758.6 gi|159040911|ref|YP_001540163.1| - 0.71 10.0 16.3 2.9 8.0 5.4 3.2 1 1 2 3 3 3 0 Prefoldin subunit FlaC_arch PF05377.11 gi|159040911|ref|YP_001540163.1| - 0.82 10.1 16.5 3.4 8.1 2.5 4.5 1 1 1 2 2 1 0 Flagella accessory protein C (FlaC) DUF4404 PF14357.6 gi|159040911|ref|YP_001540163.1| - 0.88 10.3 10.8 0.24 12.0 0.4 3.2 2 1 1 3 3 2 0 Domain of unknown function (DUF4404) FlaG PF03646.15 gi|159040911|ref|YP_001540163.1| - 0.89 9.8 9.4 0.4 10.9 1.1 2.8 2 1 1 3 3 2 0 FlaG protein HalX PF08663.10 gi|159040911|ref|YP_001540163.1| - 0.9 9.9 10.7 75 3.8 5.6 3.9 1 1 1 2 2 2 0 HalX domain FIN1 PF17300.2 gi|159040911|ref|YP_001540163.1| - 0.99 8.9 11.0 2.6 7.5 1.5 2.4 2 0 0 2 2 2 0 Filaments in between nuclei protein-1 CR6_interact PF10147.9 gi|159040911|ref|YP_001540163.1| - 1 9.1 6.7 1.8 8.3 6.7 1.5 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 MtrG PF04210.13 gi|159040911|ref|YP_001540163.1| - 1.1 9.2 6.9 18 5.3 0.5 3.6 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Prefoldin PF02996.17 gi|159040911|ref|YP_001540163.1| - 1.3 8.9 11.8 2.1 8.3 1.5 3.5 2 1 1 3 3 2 0 Prefoldin subunit DASH_Duo1 PF08651.10 gi|159040911|ref|YP_001540163.1| - 1.5 8.7 9.7 21 5.0 4.1 3.7 1 1 2 3 3 3 0 DASH complex subunit Duo1 FAM76 PF16046.5 gi|159040911|ref|YP_001540163.1| - 1.6 8.0 8.4 3.8 6.8 8.2 1.7 1 1 0 1 1 1 0 FAM76 protein DUF2802 PF10975.8 gi|159040911|ref|YP_001540163.1| - 1.6 8.9 11.6 48 4.2 3.9 4.7 2 1 1 3 3 2 0 Protein of unknown function (DUF2802) PRKCSH-like PF12999.7 gi|159040911|ref|YP_001540163.1| - 1.7 8.4 8.2 3.4 7.4 1.2 2.2 1 1 1 2 2 2 0 Glucosidase II beta subunit-like DUF1542 PF07564.11 gi|159040911|ref|YP_001540163.1| - 1.7 8.8 13.0 6 7.0 7.5 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1542) MtrB PF05440.12 gi|159040911|ref|YP_001540163.1| - 2 8.9 5.6 28 5.2 0.1 3.8 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B zf-C4H2 PF10146.9 gi|159040911|ref|YP_001540163.1| - 2 8.7 9.6 2.3 8.5 9.1 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein Nup88 PF10168.9 gi|159040911|ref|YP_001540163.1| - 2 6.1 12.5 4.3 5.0 12.5 1.6 1 1 0 1 1 1 0 Nuclear pore component MerR-DNA-bind PF09278.11 gi|159040911|ref|YP_001540163.1| - 2.1 9.0 10.7 73 4.0 5.1 4.2 1 1 3 4 4 4 0 MerR, DNA binding FemAB PF02388.16 gi|159040911|ref|YP_001540163.1| - 2.1 7.1 6.0 3.8 6.3 6.0 1.6 1 1 0 1 1 1 0 FemAB family YabA PF06156.13 gi|159040911|ref|YP_001540163.1| - 2.3 8.9 11.0 1.2e+02 3.3 11.0 3.0 1 1 0 1 1 1 0 Initiation control protein YabA APG6_N PF17675.1 gi|159040911|ref|YP_001540163.1| - 2.3 8.8 8.6 12 6.5 8.6 2.2 1 1 0 1 1 1 0 Apg6 coiled-coil region Vir_act_alpha_C PF10400.9 gi|159040911|ref|YP_001540163.1| - 2.5 8.9 6.0 19 6.0 2.7 2.7 1 1 1 2 2 2 0 Virulence activator alpha C-term KH_5 PF13184.6 gi|159040911|ref|YP_001540163.1| - 2.5 8.3 8.2 16 5.7 0.6 3.4 1 1 2 3 3 3 0 NusA-like KH domain DUF4140 PF13600.6 gi|159040911|ref|YP_001540163.1| - 2.5 8.6 11.2 1.3e+03 -0.1 11.2 3.3 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) PMC2NT PF08066.12 gi|159040911|ref|YP_001540163.1| - 2.8 8.7 10.8 3.7 8.3 3.8 3.0 1 1 2 3 3 2 0 PMC2NT (NUC016) domain Stathmin PF00836.19 gi|159040911|ref|YP_001540163.1| - 3 7.8 8.8 0.79 9.7 3.2 1.9 1 1 1 2 2 2 0 Stathmin family CHD5 PF04420.14 gi|159040911|ref|YP_001540163.1| - 3.3 7.5 9.8 2.7 7.8 1.5 2.7 1 1 1 2 2 2 0 CHD5-like protein HAUS6_N PF14661.6 gi|159040911|ref|YP_001540163.1| - 3.6 7.1 7.7 4.6 6.8 7.0 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus UPF0242 PF06785.11 gi|159040911|ref|YP_001540163.1| - 3.8 7.6 11.4 5.9 7.0 11.4 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DLP_helical PF18709.1 gi|159040911|ref|YP_001540163.1| - 4.4 6.4 13.1 13 4.9 13.0 2.0 1 1 0 1 1 1 0 Dynamin-like helical domain DUF1515 PF07439.11 gi|159040911|ref|YP_001540163.1| - 6.1 6.9 12.5 45 4.1 5.1 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) ECM11 PF15463.6 gi|159040911|ref|YP_001540163.1| - 8.8 6.9 9.7 37 4.9 1.1 3.0 1 1 2 3 3 3 0 Extracellular mutant protein 11 FYVE_2 PF02318.16 gi|159040911|ref|YP_001540163.1| - 9.3 6.5 7.4 44 4.3 4.0 2.5 1 1 1 2 2 2 0 FYVE-type zinc finger Sugar_tr PF00083.24 gi|159040912|ref|YP_001540164.1| - 5.7e-15 55.1 7.4 5.7e-15 55.1 7.4 2.6 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|159040912|ref|YP_001540164.1| - 1.9e-11 43.5 46.1 1.9e-11 43.5 46.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily PfkB PF00294.24 gi|159040913|ref|YP_001540165.1| - 1.7e-42 145.8 0.0 1.9e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF2953 PF11167.8 gi|159040913|ref|YP_001540165.1| - 0.018 15.1 0.9 0.031 14.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) ADP_PFK_GK PF04587.15 gi|159040913|ref|YP_001540165.1| - 0.052 12.1 0.0 0.073 11.6 0.0 1.2 1 0 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region FeoB_associated PF12669.7 gi|159040914|ref|YP_001540166.1| - 2.3 8.7 7.6 2.8 8.4 0.2 2.9 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein Phlebovirus_NSM PF07246.11 gi|159040915|ref|YP_001540167.1| - 0.11 11.8 0.8 0.12 11.7 0.8 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M TM2 PF05154.16 gi|159040915|ref|YP_001540167.1| - 0.29 11.5 0.3 0.29 11.5 0.3 2.0 2 0 0 2 2 2 0 TM2 domain Pox_A14 PF05767.12 gi|159040916|ref|YP_001540168.1| - 0.0049 17.0 5.0 0.0085 16.2 5.0 1.5 1 1 0 1 1 1 1 Poxvirus virion envelope protein A14 SK_channel PF03530.14 gi|159040916|ref|YP_001540168.1| - 0.0078 16.2 0.9 0.0098 15.9 0.9 1.1 1 0 0 1 1 1 1 Calcium-activated SK potassium channel SUR7 PF06687.12 gi|159040916|ref|YP_001540168.1| - 0.038 13.6 0.7 0.046 13.4 0.7 1.1 1 0 0 1 1 1 0 SUR7/PalI family Gemini_mov PF01708.16 gi|159040916|ref|YP_001540168.1| - 0.059 13.1 0.1 0.059 13.1 0.1 1.7 2 0 0 2 2 2 0 Geminivirus putative movement protein YIF1 PF03878.15 gi|159040916|ref|YP_001540168.1| - 0.085 12.4 3.7 0.1 12.1 3.7 1.1 1 0 0 1 1 1 0 YIF1 DUF2975 PF11188.8 gi|159040916|ref|YP_001540168.1| - 0.21 11.5 8.0 0.59 10.0 8.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3139 PF11337.8 gi|159040916|ref|YP_001540168.1| - 0.21 12.2 4.1 1.5 9.6 4.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3139) DUF2207 PF09972.9 gi|159040916|ref|YP_001540168.1| - 0.38 9.5 2.2 0.43 9.3 2.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MerC PF03203.14 gi|159040916|ref|YP_001540168.1| - 0.4 11.2 7.2 3.8 8.0 1.0 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein DUF3040 PF11239.8 gi|159040916|ref|YP_001540168.1| - 1.9 8.8 9.1 79 3.6 9.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) CTP_synth_N PF06418.14 gi|159040917|ref|YP_001540169.1| - 4.3e-116 386.9 0.3 5.8e-116 386.4 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|159040917|ref|YP_001540169.1| - 5.3e-48 163.3 0.0 1e-47 162.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|159040917|ref|YP_001540169.1| - 9e-10 38.7 0.0 1.9e-09 37.6 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|159040917|ref|YP_001540169.1| - 9.8e-05 22.4 0.0 0.00016 21.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Asparaginase_C PF17763.1 gi|159040917|ref|YP_001540169.1| - 0.066 13.4 0.2 0.39 10.9 0.0 2.3 3 0 0 3 3 3 0 Glutaminase/Asparaginase C-terminal domain FAA_hydrolase PF01557.18 gi|159040918|ref|YP_001540170.1| - 2.9e-70 236.4 0.0 4.2e-70 235.8 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family QSregVF_b PF12843.7 gi|159040918|ref|YP_001540170.1| - 0.067 13.1 0.0 0.54 10.2 0.0 2.2 2 0 0 2 2 2 0 Putative quorum-sensing-regulated virulence factor GAPES1 PF17155.4 gi|159040918|ref|YP_001540170.1| - 0.17 11.1 0.0 0.91 8.8 0.0 1.9 2 0 0 2 2 2 0 Gammaproteobacterial periplasmic sensor domain Glyco_trans_2_3 PF13632.6 gi|159040919|ref|YP_001540171.1| - 8.5e-22 78.0 0.2 8.5e-22 78.0 0.2 1.6 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|159040919|ref|YP_001540171.1| - 1.3e-20 73.9 0.0 1.8e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|159040919|ref|YP_001540171.1| - 2e-18 67.1 0.0 3e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|159040919|ref|YP_001540171.1| - 0.0045 16.5 0.0 0.0086 15.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 WD40_alt PF14077.6 gi|159040919|ref|YP_001540171.1| - 0.016 15.1 0.2 0.028 14.3 0.2 1.3 1 0 0 1 1 1 0 Alternative WD40 repeat motif Glyco_tranf_2_2 PF10111.9 gi|159040919|ref|YP_001540171.1| - 0.029 13.8 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 HGTP_anticodon PF03129.20 gi|159040920|ref|YP_001540172.1| - 3.3e-22 78.4 0.3 8.1e-22 77.2 0.3 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|159040920|ref|YP_001540172.1| - 8.1e-08 32.4 0.0 1.7e-07 31.4 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF678 PF05077.12 gi|159040920|ref|YP_001540172.1| - 0.063 13.4 0.3 0.53 10.4 0.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF678) zf-C2HC_2 PF13913.6 gi|159040920|ref|YP_001540172.1| - 0.088 12.7 0.0 0.088 12.7 0.0 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.6 gi|159040920|ref|YP_001540172.1| - 0.099 12.4 1.9 9.2 6.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|159040920|ref|YP_001540172.1| - 0.12 12.3 3.1 2.5 8.1 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|159040920|ref|YP_001540172.1| - 1.2 9.0 3.0 41 4.0 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|159040920|ref|YP_001540172.1| - 1.4 8.5 5.8 6.1 6.4 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain ECH_1 PF00378.20 gi|159040921|ref|YP_001540173.1| - 1.1e-68 231.3 0.0 1.4e-68 230.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|159040921|ref|YP_001540173.1| - 2e-67 226.6 0.0 3.1e-67 225.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|159040921|ref|YP_001540173.1| - 4.8e-41 139.3 0.5 6.2e-25 87.6 0.1 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|159040921|ref|YP_001540173.1| - 1.1e-38 133.6 0.0 1.9e-36 126.2 0.0 2.3 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|159040921|ref|YP_001540173.1| - 1e-06 29.0 0.0 2.9e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|159040921|ref|YP_001540173.1| - 0.00038 20.5 0.0 0.0023 17.9 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|159040921|ref|YP_001540173.1| - 0.0013 19.2 0.9 0.0075 16.8 0.6 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent OTCace PF00185.24 gi|159040921|ref|YP_001540173.1| - 0.016 15.3 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DFP PF04127.15 gi|159040921|ref|YP_001540173.1| - 0.094 12.5 0.7 0.66 9.8 0.5 2.4 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein SDH_sah PF01972.16 gi|159040921|ref|YP_001540173.1| - 0.11 11.5 0.0 0.28 10.2 0.0 1.6 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Shikimate_DH PF01488.20 gi|159040921|ref|YP_001540173.1| - 0.28 11.3 3.7 15 5.7 0.1 3.4 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase AFOR_C PF01314.18 gi|159040922|ref|YP_001540174.1| - 8.9e-121 403.5 0.0 1.1e-120 403.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|159040922|ref|YP_001540174.1| - 1.5e-67 227.3 0.0 2.3e-67 226.7 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HobA PF12163.8 gi|159040923|ref|YP_001540175.1| - 0.0054 16.3 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 DNA replication regulator PhosphMutase PF10143.9 gi|159040924|ref|YP_001540176.1| - 9.3e-46 155.8 0.0 1.4e-45 155.2 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|159040924|ref|YP_001540176.1| - 7.8e-26 90.9 0.0 1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Prefoldin_2 PF01920.20 gi|159040925|ref|YP_001540177.1| - 4.2e-21 74.9 11.7 5e-21 74.6 11.7 1.0 1 0 0 1 1 1 1 Prefoldin subunit LegC3_N PF18654.1 gi|159040925|ref|YP_001540177.1| - 0.00049 19.4 4.1 0.0006 19.1 4.1 1.0 1 0 0 1 1 1 1 LegC3 N-terminal coiled-coil domain Prefoldin PF02996.17 gi|159040925|ref|YP_001540177.1| - 0.0017 18.3 9.6 0.0046 16.9 3.3 2.1 1 1 1 2 2 2 2 Prefoldin subunit Peptidase_C6 PF00851.18 gi|159040925|ref|YP_001540177.1| - 0.0022 17.0 0.4 0.0023 16.9 0.4 1.0 1 0 0 1 1 1 1 Helper component proteinase TPR_MLP1_2 PF07926.12 gi|159040925|ref|YP_001540177.1| - 0.012 15.6 9.8 0.029 14.4 9.8 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Macoilin PF09726.9 gi|159040925|ref|YP_001540177.1| - 0.049 12.2 2.6 0.067 11.7 2.6 1.1 1 0 0 1 1 1 0 Macoilin family Tropomyosin_1 PF12718.7 gi|159040925|ref|YP_001540177.1| - 0.12 12.6 7.8 1.4 9.1 2.2 2.1 2 0 0 2 2 2 0 Tropomyosin like FlaC_arch PF05377.11 gi|159040925|ref|YP_001540177.1| - 0.13 12.7 6.8 0.19 12.2 2.4 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|159040925|ref|YP_001540177.1| - 0.38 11.2 4.0 6.8 7.2 0.4 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) KIP1 PF07765.12 gi|159040925|ref|YP_001540177.1| - 0.44 10.7 3.2 0.45 10.7 0.6 2.3 1 1 1 2 2 2 0 KIP1-like protein APG6_N PF17675.1 gi|159040925|ref|YP_001540177.1| - 0.93 10.0 12.3 2.7 8.5 12.3 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF1664 PF07889.12 gi|159040925|ref|YP_001540177.1| - 1.5 8.9 7.1 9.5 6.3 1.9 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Nsp1_C PF05064.13 gi|159040925|ref|YP_001540177.1| - 2.4 8.0 9.7 1.2 8.9 2.2 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF4763 PF15960.5 gi|159040925|ref|YP_001540177.1| - 2.7 7.3 11.6 4.2 6.6 5.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) UPF0242 PF06785.11 gi|159040925|ref|YP_001540177.1| - 3.4 7.7 11.5 5.6 7.0 11.5 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|159040925|ref|YP_001540177.1| - 5.5 6.0 8.8 8.1 5.4 8.8 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|159040925|ref|YP_001540177.1| - 6.6 6.9 11.7 2.6 8.2 2.9 2.6 2 1 0 2 2 2 0 bZIP transcription factor ATP-synt_ab PF00006.25 gi|159040926|ref|YP_001540178.1| - 1.4e-65 220.9 0.0 1.9e-65 220.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|159040926|ref|YP_001540178.1| - 2.4e-07 31.2 0.6 4.1e-07 30.4 0.6 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Met_10 PF02475.16 gi|159040927|ref|YP_001540179.1| - 4.5e-47 160.4 0.1 6.9e-47 159.8 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|159040927|ref|YP_001540179.1| - 1.8e-06 27.4 0.0 3.2e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|159040927|ref|YP_001540179.1| - 0.0057 16.2 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain DUF2153 PF09921.9 gi|159040928|ref|YP_001540180.1| - 1.5e-33 115.2 0.1 2e-33 114.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) NAD_binding_8 PF13450.6 gi|159040929|ref|YP_001540181.1| - 2.8e-09 37.1 0.2 6.3e-09 35.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|159040929|ref|YP_001540181.1| - 8.4e-09 35.2 0.1 4.7e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|159040929|ref|YP_001540181.1| - 2.1e-07 30.8 0.2 0.0016 18.1 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|159040929|ref|YP_001540181.1| - 2.9e-06 26.9 0.3 4.1e-06 26.4 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|159040929|ref|YP_001540181.1| - 2.1e-05 25.0 2.9 0.00028 21.4 0.9 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|159040929|ref|YP_001540181.1| - 2.9e-05 22.9 0.6 8.4e-05 21.4 0.8 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|159040929|ref|YP_001540181.1| - 3.3e-05 23.3 0.1 0.00038 19.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|159040929|ref|YP_001540181.1| - 6.2e-05 22.2 1.4 0.00013 21.2 1.1 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|159040929|ref|YP_001540181.1| - 0.00072 18.9 0.6 0.0013 18.1 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|159040929|ref|YP_001540181.1| - 0.0011 18.1 1.0 0.0011 18.1 1.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|159040929|ref|YP_001540181.1| - 0.023 13.9 0.4 0.09 12.0 0.1 1.9 2 0 0 2 2 2 0 Thi4 family Trp_halogenase PF04820.14 gi|159040929|ref|YP_001540181.1| - 0.032 13.1 0.2 0.057 12.3 0.2 1.4 1 0 0 1 1 1 0 Tryptophan halogenase IlvN PF07991.12 gi|159040929|ref|YP_001540181.1| - 0.069 12.7 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_3 PF13738.6 gi|159040929|ref|YP_001540181.1| - 0.22 10.8 0.4 0.36 10.0 0.4 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SHMT PF00464.19 gi|159040930|ref|YP_001540182.1| - 3.7e-69 233.2 0.8 4.6e-69 232.9 0.8 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|159040930|ref|YP_001540182.1| - 1.6e-12 47.3 0.1 2.2e-12 46.9 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|159040930|ref|YP_001540182.1| - 1.8e-08 34.0 0.0 4.4e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|159040930|ref|YP_001540182.1| - 9e-06 25.2 0.0 1.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|159040930|ref|YP_001540182.1| - 8.8e-05 21.6 0.0 0.00093 18.3 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|159040930|ref|YP_001540182.1| - 0.00092 18.3 0.0 0.0029 16.7 0.0 1.9 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase tRNA_int_endo PF01974.17 gi|159040932|ref|YP_001540184.1| - 2.8e-24 85.0 0.1 4.6e-24 84.3 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|159040932|ref|YP_001540184.1| - 2.6e-19 68.6 0.2 4e-19 68.1 0.2 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|159040932|ref|YP_001540184.1| - 0.0021 18.2 0.2 0.006 16.7 0.0 1.9 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term Flavin_Reduct PF01613.18 gi|159040933|ref|YP_001540185.1| - 3e-39 134.6 0.0 3.3e-39 134.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CCG PF02754.16 gi|159040934|ref|YP_001540186.1| - 3.8e-08 33.4 0.0 4.8e-07 29.9 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain SNF2_assoc PF08455.10 gi|159040936|ref|YP_001540188.1| - 0.025 13.7 0.3 0.028 13.5 0.3 1.0 1 0 0 1 1 1 0 Bacterial SNF2 helicase associated Acetyltransf_1 PF00583.25 gi|159040937|ref|YP_001540189.1| - 8.6e-10 38.9 0.0 1e-09 38.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|159040937|ref|YP_001540189.1| - 1.2e-05 25.2 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|159040937|ref|YP_001540189.1| - 1.6e-05 25.2 0.1 3.3e-05 24.2 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|159040937|ref|YP_001540189.1| - 0.00083 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|159040937|ref|YP_001540189.1| - 0.0014 19.3 0.1 0.0017 19.0 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Pox_F12L PF03337.13 gi|159040937|ref|YP_001540189.1| - 0.036 12.2 0.0 0.043 12.0 0.0 1.1 1 0 0 1 1 1 0 Poxvirus F12L protein Acetyltransf_CG PF14542.6 gi|159040937|ref|YP_001540189.1| - 0.1 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|159040939|ref|YP_001540191.1| - 1.3e-17 64.1 0.0 2.3e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|159040939|ref|YP_001540191.1| - 2.1e-11 44.1 0.0 4e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|159040939|ref|YP_001540191.1| - 1.3e-09 38.9 0.1 2.8e-09 37.8 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|159040939|ref|YP_001540191.1| - 1.5e-09 37.9 0.0 2.6e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|159040939|ref|YP_001540191.1| - 9.7e-09 35.4 0.0 4.4e-08 33.3 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|159040939|ref|YP_001540191.1| - 1.2e-08 34.8 0.0 2e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltran PF12746.7 gi|159040939|ref|YP_001540191.1| - 2.6e-05 23.9 0.0 4.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 GNAT acetyltransferase PanZ PF12568.8 gi|159040939|ref|YP_001540191.1| - 7e-05 22.6 0.0 0.0001 22.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 gi|159040939|ref|YP_001540191.1| - 0.00011 22.4 0.1 0.0002 21.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|159040939|ref|YP_001540191.1| - 0.00025 21.2 0.0 0.00036 20.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|159040939|ref|YP_001540191.1| - 0.0029 17.7 0.0 0.0063 16.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Adenosine_kin PF04008.14 gi|159040939|ref|YP_001540191.1| - 0.0031 17.3 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Adenosine specific kinase Acetyltransf_18 PF18014.1 gi|159040939|ref|YP_001540191.1| - 0.12 12.2 0.0 1 9.2 0.0 2.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain GFO_IDH_MocA PF01408.22 gi|159040940|ref|YP_001540192.1| - 9.5e-25 87.8 0.1 1.5e-24 87.2 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159040940|ref|YP_001540192.1| - 7.7e-06 25.9 0.0 1.8e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|159040940|ref|YP_001540192.1| - 0.0035 18.0 0.0 0.0062 17.2 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DUF981 PF06168.11 gi|159040941|ref|YP_001540193.1| - 4.2e-64 215.9 16.7 4.8e-64 215.7 16.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) PALP PF00291.25 gi|159040942|ref|YP_001540194.1| - 8.5e-22 77.9 0.0 1.8e-11 44.0 0.0 3.2 1 1 1 2 2 2 2 Pyridoxal-phosphate dependent enzyme Acid_phosphat_B PF03767.14 gi|159040943|ref|YP_001540195.1| - 1.9e-07 31.0 0.0 2.5e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase PF00702.26 gi|159040943|ref|YP_001540195.1| - 3.9e-05 24.1 0.0 0.086 13.1 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|159040943|ref|YP_001540195.1| - 0.0038 17.3 0.0 1.8 8.6 0.0 2.0 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|159040943|ref|YP_001540195.1| - 0.0065 16.5 0.0 0.0097 16.0 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|159040943|ref|YP_001540195.1| - 0.073 12.6 0.7 5.6 6.4 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2608) AMMECR1 PF01871.17 gi|159040944|ref|YP_001540196.1| - 1.2e-45 155.2 0.0 1.4e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 EphA2_TM PF14575.6 gi|159040945|ref|YP_001540197.1| - 0.1 13.5 0.1 0.18 12.7 0.1 1.4 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain ABC2_membrane PF01061.24 gi|159040947|ref|YP_001540199.1| - 3.8e-33 114.7 22.3 3.8e-33 114.7 22.3 2.5 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|159040947|ref|YP_001540199.1| - 3.2e-12 46.2 26.2 3.2e-12 46.2 26.2 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|159040947|ref|YP_001540199.1| - 3.1e-09 36.5 18.7 4.7e-09 36.0 18.7 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|159040947|ref|YP_001540199.1| - 2 8.3 22.6 0.22 11.5 15.1 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|159040948|ref|YP_001540200.1| - 4.1e-33 114.8 0.0 5.9e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|159040948|ref|YP_001540200.1| - 6.4e-14 52.4 0.0 1.7e-13 51.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|159040948|ref|YP_001540200.1| - 2.3e-10 40.8 0.4 1.4e-06 28.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|159040948|ref|YP_001540200.1| - 0.0016 19.0 0.1 0.003 18.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|159040948|ref|YP_001540200.1| - 0.0092 15.7 0.0 3 7.5 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|159040948|ref|YP_001540200.1| - 0.02 14.5 0.1 0.059 13.0 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|159040948|ref|YP_001540200.1| - 0.046 13.6 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|159040948|ref|YP_001540200.1| - 0.068 13.6 0.9 0.56 10.6 0.4 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|159040948|ref|YP_001540200.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|159040948|ref|YP_001540200.1| - 0.12 11.0 0.0 4.7 5.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|159040948|ref|YP_001540200.1| - 0.15 11.7 0.1 0.53 10.0 0.1 1.9 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.19 gi|159040948|ref|YP_001540200.1| - 0.22 10.9 0.0 9.9 5.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF2203 PF09969.9 gi|159040949|ref|YP_001540201.1| - 2.5e-08 34.7 0.0 6e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2203) KH_6 PF15985.5 gi|159040950|ref|YP_001540202.1| - 7e-10 39.1 0.3 1.2e-09 38.3 0.3 1.4 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|159040950|ref|YP_001540202.1| - 4.4e-05 23.2 0.1 0.00011 21.9 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|159040950|ref|YP_001540202.1| - 0.00013 21.7 0.4 0.00039 20.2 0.3 1.9 1 1 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|159040950|ref|YP_001540202.1| - 0.039 13.8 0.0 0.089 12.7 0.0 1.6 1 0 0 1 1 1 0 KH domain SRP19 PF01922.17 gi|159040951|ref|YP_001540203.1| - 3.3e-20 72.8 0.1 4e-20 72.5 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein ATP_bind_1 PF03029.17 gi|159040952|ref|YP_001540204.1| - 7.8e-55 186.3 0.0 8.7e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|159040952|ref|YP_001540204.1| - 1.9e-06 28.4 0.0 5.1e-06 27.0 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain MeaB PF03308.16 gi|159040952|ref|YP_001540204.1| - 2.3e-06 26.8 0.0 4.1e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|159040952|ref|YP_001540204.1| - 4.2e-05 23.6 0.0 6.4e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|159040952|ref|YP_001540204.1| - 4.5e-05 24.0 0.0 6.6e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|159040952|ref|YP_001540204.1| - 7.1e-05 22.5 0.8 0.16 11.5 0.2 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|159040952|ref|YP_001540204.1| - 9e-05 22.1 0.0 0.16 11.5 0.1 2.4 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.12 gi|159040952|ref|YP_001540204.1| - 0.0001 21.7 0.0 0.00017 20.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin ArsA_ATPase PF02374.15 gi|159040952|ref|YP_001540204.1| - 0.00011 21.5 0.0 0.0016 17.7 0.0 2.5 3 0 0 3 3 3 1 Anion-transporting ATPase DUF87 PF01935.17 gi|159040952|ref|YP_001540204.1| - 0.00017 21.7 0.0 0.00034 20.8 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|159040952|ref|YP_001540204.1| - 0.0002 21.3 0.6 0.85 9.5 0.0 3.0 3 0 0 3 3 3 2 RsgA GTPase MMR_HSR1 PF01926.23 gi|159040952|ref|YP_001540204.1| - 0.00038 20.5 0.1 0.0036 17.4 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase APS_kinase PF01583.20 gi|159040952|ref|YP_001540204.1| - 0.00056 19.8 0.0 0.00089 19.2 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|159040952|ref|YP_001540204.1| - 0.00085 19.2 0.0 0.0059 16.4 0.0 2.1 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|159040952|ref|YP_001540204.1| - 0.0012 18.7 0.0 0.0073 16.2 0.0 2.0 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.6 gi|159040952|ref|YP_001540204.1| - 0.0018 18.5 0.0 0.0033 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|159040952|ref|YP_001540204.1| - 0.0035 17.1 0.0 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|159040952|ref|YP_001540204.1| - 0.004 16.2 0.0 0.0095 15.0 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|159040952|ref|YP_001540204.1| - 0.0041 17.6 0.0 0.0085 16.6 0.0 1.6 2 0 0 2 2 1 1 ABC transporter ParA PF10609.9 gi|159040952|ref|YP_001540204.1| - 0.0045 16.5 0.1 0.011 15.1 0.0 1.7 1 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|159040952|ref|YP_001540204.1| - 0.0057 16.3 0.1 0.033 13.8 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|159040952|ref|YP_001540204.1| - 0.0077 16.0 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|159040952|ref|YP_001540204.1| - 0.008 15.9 0.0 4 7.2 0.0 3.2 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.6 gi|159040952|ref|YP_001540204.1| - 0.009 16.3 0.0 0.06 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|159040952|ref|YP_001540204.1| - 0.0091 15.3 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|159040952|ref|YP_001540204.1| - 0.0094 15.9 0.1 0.037 13.9 0.0 2.0 2 1 0 2 2 2 1 NACHT domain KTI12 PF08433.10 gi|159040952|ref|YP_001540204.1| - 0.017 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1_Xtn PF16897.5 gi|159040952|ref|YP_001540204.1| - 0.022 14.8 0.4 0.75 9.8 0.1 3.0 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain AAA_14 PF13173.6 gi|159040952|ref|YP_001540204.1| - 0.029 14.4 0.1 0.055 13.5 0.0 1.8 2 1 0 2 2 1 0 AAA domain Septin PF00735.18 gi|159040952|ref|YP_001540204.1| - 0.032 13.5 0.1 2.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Septin RNA_helicase PF00910.22 gi|159040952|ref|YP_001540204.1| - 0.036 14.5 0.0 0.088 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.7 gi|159040952|ref|YP_001540204.1| - 0.042 12.8 0.0 0.053 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain GDI PF00996.18 gi|159040952|ref|YP_001540204.1| - 0.051 12.1 0.0 0.076 11.5 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor PhoH PF02562.16 gi|159040952|ref|YP_001540204.1| - 0.052 13.0 0.0 0.17 11.3 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.22 gi|159040952|ref|YP_001540204.1| - 0.068 12.4 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|159040952|ref|YP_001540204.1| - 0.072 13.1 0.0 0.14 12.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) HSBP1 PF06825.12 gi|159040952|ref|YP_001540204.1| - 0.076 12.9 0.2 0.076 12.9 0.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Herpes_Helicase PF02689.14 gi|159040952|ref|YP_001540204.1| - 0.077 10.9 0.1 0.11 10.4 0.1 1.1 1 0 0 1 1 1 0 Helicase KAP_NTPase PF07693.14 gi|159040952|ref|YP_001540204.1| - 0.084 12.1 0.0 0.084 12.1 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain ATPase_2 PF01637.18 gi|159040952|ref|YP_001540204.1| - 0.13 12.1 0.1 0.27 11.1 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea TrwB_AAD_bind PF10412.9 gi|159040952|ref|YP_001540204.1| - 0.16 10.9 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain dNK PF01712.19 gi|159040952|ref|YP_001540204.1| - 0.16 11.8 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_23 PF13476.6 gi|159040952|ref|YP_001540204.1| - 0.81 10.1 2.2 4.8 7.6 2.2 2.0 1 1 0 1 1 1 0 AAA domain PfkB PF00294.24 gi|159040953|ref|YP_001540205.1| - 2.4e-49 168.3 0.0 2.7e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase NTP_transf_5 PF14907.6 gi|159040954|ref|YP_001540206.1| - 9.4e-08 32.0 0.0 1.5e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase ATPase PF06745.13 gi|159040956|ref|YP_001540208.1| - 1.1e-20 74.0 0.0 2.1e-20 73.1 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|159040956|ref|YP_001540208.1| - 5e-06 26.2 0.0 9.1e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|159040956|ref|YP_001540208.1| - 1.1e-05 24.3 0.4 1.4e-05 23.9 0.4 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|159040956|ref|YP_001540208.1| - 0.00029 20.9 0.0 0.0021 18.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|159040956|ref|YP_001540208.1| - 0.00069 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|159040956|ref|YP_001540208.1| - 0.00099 19.5 0.0 0.0014 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|159040956|ref|YP_001540208.1| - 0.0018 18.2 0.2 0.012 15.5 0.2 2.4 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|159040956|ref|YP_001540208.1| - 0.0044 17.3 0.0 0.0088 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159040956|ref|YP_001540208.1| - 0.0046 17.4 0.1 0.015 15.7 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|159040956|ref|YP_001540208.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region PAXNEB PF05625.11 gi|159040956|ref|YP_001540208.1| - 0.024 13.8 0.1 0.64 9.1 0.1 2.0 2 0 0 2 2 2 0 PAXNEB protein ATPase_2 PF01637.18 gi|159040956|ref|YP_001540208.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|159040956|ref|YP_001540208.1| - 0.065 13.2 0.0 0.23 11.5 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|159040956|ref|YP_001540208.1| - 0.096 12.4 0.0 0.8 9.4 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 gi|159040956|ref|YP_001540208.1| - 0.12 11.8 0.1 13 5.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|159040956|ref|YP_001540208.1| - 0.16 12.4 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Malic_M PF03949.15 gi|159040957|ref|YP_001540209.1| - 6.5e-23 81.3 0.2 1.1e-21 77.2 0.2 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|159040957|ref|YP_001540209.1| - 5.9e-22 78.3 0.2 6.4e-14 52.2 0.2 3.2 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain AlaDh_PNT_C PF01262.21 gi|159040957|ref|YP_001540209.1| - 1.8e-05 24.2 0.1 3.7e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.19 gi|159040957|ref|YP_001540209.1| - 0.0057 16.0 0.0 0.017 14.4 0.0 1.8 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SIS_2 PF13580.6 gi|159040957|ref|YP_001540209.1| - 0.0089 16.1 1.2 0.17 11.9 0.2 2.8 2 1 0 2 2 2 1 SIS domain Shikimate_DH PF01488.20 gi|159040957|ref|YP_001540209.1| - 0.021 14.9 2.6 1.5 8.8 0.0 2.6 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Peripla_BP_6 PF13458.6 gi|159040957|ref|YP_001540209.1| - 0.035 13.8 0.0 0.17 11.5 0.0 2.1 3 0 0 3 3 3 0 Periplasmic binding protein AdoHcyase_NAD PF00670.21 gi|159040957|ref|YP_001540209.1| - 0.12 12.5 0.0 0.37 10.9 0.0 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ribosomal_S11 PF00411.19 gi|159040957|ref|YP_001540209.1| - 0.16 12.4 2.1 1.2 9.5 0.1 2.7 4 0 0 4 4 4 0 Ribosomal protein S11 Acetyltransf_1 PF00583.25 gi|159040958|ref|YP_001540210.1| - 4.1e-15 56.0 0.0 4.4e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|159040958|ref|YP_001540210.1| - 7.4e-13 48.5 0.0 1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|159040958|ref|YP_001540210.1| - 3.4e-11 43.4 0.0 4.9e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|159040958|ref|YP_001540210.1| - 7.5e-10 39.2 0.0 9.3e-10 38.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|159040958|ref|YP_001540210.1| - 3.6e-07 30.3 0.7 1e-06 28.8 0.7 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|159040958|ref|YP_001540210.1| - 9.4e-07 28.7 0.0 1.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|159040958|ref|YP_001540210.1| - 4.7e-06 27.3 0.0 5.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|159040958|ref|YP_001540210.1| - 0.00077 19.2 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|159040958|ref|YP_001540210.1| - 0.0018 18.4 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|159040958|ref|YP_001540210.1| - 0.0028 17.8 0.1 0.0057 16.8 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_16 PF05301.11 gi|159040958|ref|YP_001540210.1| - 0.0029 17.4 0.0 0.004 17.0 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase, Mec-17 Acetyltransf_15 PF17013.5 gi|159040958|ref|YP_001540210.1| - 0.0035 16.8 0.3 0.033 13.6 0.3 2.0 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|159040958|ref|YP_001540210.1| - 0.014 15.1 0.1 0.057 13.1 0.1 1.7 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|159040958|ref|YP_001540210.1| - 0.17 11.9 0.0 0.32 11.0 0.0 1.6 1 1 0 1 1 1 0 ESCO1/2 acetyl-transferase DUF429 PF04250.13 gi|159040960|ref|YP_001540212.1| - 1.9e-09 37.7 2.4 3.8e-08 33.4 2.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF1664 PF07889.12 gi|159040961|ref|YP_001540213.1| - 4.3e-10 39.7 44.1 0.0005 20.1 1.5 6.8 2 1 5 7 7 7 4 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|159040961|ref|YP_001540213.1| - 5.2e-06 25.6 75.9 0.056 12.3 24.2 4.1 1 1 3 4 4 4 4 Spc7 kinetochore protein Baculo_PEP_C PF04513.12 gi|159040961|ref|YP_001540213.1| - 0.00031 20.8 29.9 0.46 10.5 3.9 5.8 1 1 4 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus VirD1 PF07328.11 gi|159040961|ref|YP_001540213.1| - 0.00056 19.9 4.0 0.013 15.5 0.0 3.1 2 1 0 2 2 2 1 T-DNA border endonuclease VirD1 BLOC1_2 PF10046.9 gi|159040961|ref|YP_001540213.1| - 0.001 19.4 53.8 0.76 10.1 5.7 7.9 2 1 3 7 7 7 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|159040961|ref|YP_001540213.1| - 0.0014 17.7 58.6 0.022 13.7 16.0 5.0 1 1 3 5 5 5 3 Intra-flagellar transport protein 57 NPV_P10 PF05531.12 gi|159040961|ref|YP_001540213.1| - 0.003 18.0 33.4 0.72 10.4 0.8 7.8 2 1 4 7 7 7 1 Nucleopolyhedrovirus P10 protein Vip3A_N PF12495.8 gi|159040961|ref|YP_001540213.1| - 0.0031 17.5 3.0 0.0031 17.5 3.0 2.9 2 1 1 3 3 3 1 Vegetative insecticide protein 3A N terminal DUF3552 PF12072.8 gi|159040961|ref|YP_001540213.1| - 0.0047 16.4 90.9 0.054 12.9 13.3 6.0 1 1 5 7 7 7 4 Domain of unknown function (DUF3552) DUF16 PF01519.16 gi|159040961|ref|YP_001540213.1| - 0.0053 17.2 6.4 0.0053 17.2 6.4 6.4 1 1 4 6 6 6 1 Protein of unknown function DUF16 Rab5-bind PF09311.11 gi|159040961|ref|YP_001540213.1| - 0.0062 16.0 16.6 0.0062 16.0 16.6 4.7 2 2 1 4 4 4 1 Rabaptin-like protein HSBP1 PF06825.12 gi|159040961|ref|YP_001540213.1| - 0.0065 16.3 11.9 15 5.6 0.1 6.7 6 1 0 6 6 6 0 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|159040961|ref|YP_001540213.1| - 0.011 16.0 20.3 2.2 8.6 0.3 6.0 3 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) BORCS6 PF10157.9 gi|159040961|ref|YP_001540213.1| - 0.011 15.9 0.1 0.011 15.9 0.1 4.3 2 2 1 4 4 4 0 BLOC-1-related complex sub-unit 6 DUF3581 PF12119.8 gi|159040961|ref|YP_001540213.1| - 0.02 14.3 0.9 0.04 13.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3581) DUF4200 PF13863.6 gi|159040961|ref|YP_001540213.1| - 0.021 15.2 80.8 0.16 12.4 9.1 6.3 2 2 3 6 6 6 0 Domain of unknown function (DUF4200) AAA_13 PF13166.6 gi|159040961|ref|YP_001540213.1| - 0.047 12.4 50.6 0.05 12.2 12.4 3.0 1 1 2 3 3 3 0 AAA domain EzrA PF06160.12 gi|159040961|ref|YP_001540213.1| - 0.061 11.5 56.7 0.44 8.7 0.1 4.6 1 1 2 4 4 4 0 Septation ring formation regulator, EzrA FPP PF05911.11 gi|159040961|ref|YP_001540213.1| - 0.075 11.2 66.4 0.25 9.5 0.3 3.6 1 1 1 3 3 3 0 Filament-like plant protein, long coiled-coil Laminin_II PF06009.12 gi|159040961|ref|YP_001540213.1| - 0.11 12.5 54.3 0.071 13.1 0.5 6.5 1 1 6 7 7 7 0 Laminin Domain II DUF3450 PF11932.8 gi|159040961|ref|YP_001540213.1| - 0.14 11.5 63.7 0.21 10.8 0.3 5.3 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) Phycobilisome PF00502.19 gi|159040961|ref|YP_001540213.1| - 0.24 11.3 6.8 2.1 8.3 0.4 3.4 3 1 0 3 3 2 0 Phycobilisome protein Sec34 PF04136.15 gi|159040961|ref|YP_001540213.1| - 0.47 10.3 44.3 0.6 10.0 0.6 6.9 1 1 4 7 7 7 0 Sec34-like family Exonuc_VII_L PF02601.15 gi|159040961|ref|YP_001540213.1| - 0.54 9.8 57.8 1.8e+04 -24.5 57.8 4.0 1 1 0 1 1 0 0 Exonuclease VII, large subunit Mod_r PF07200.13 gi|159040961|ref|YP_001540213.1| - 0.63 10.1 67.3 0.61 10.2 17.3 5.5 1 1 5 6 6 5 0 Modifier of rudimentary (Mod(r)) protein MscS_porin PF12795.7 gi|159040961|ref|YP_001540213.1| - 0.76 9.3 74.9 0.85 9.1 38.6 4.4 3 1 1 4 4 4 0 Mechanosensitive ion channel porin domain Prefoldin_2 PF01920.20 gi|159040961|ref|YP_001540213.1| - 2.2 8.3 0.0 2.2 8.3 0.0 8.8 4 1 4 8 8 6 0 Prefoldin subunit DUF3800 PF12686.7 gi|159040961|ref|YP_001540213.1| - 3.5 8.3 6.2 5.7e+02 1.1 6.2 3.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) MCPsignal PF00015.21 gi|159040961|ref|YP_001540213.1| - 4.1 7.2 28.7 3 7.6 0.9 5.2 2 1 1 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Fez1 PF06818.15 gi|159040961|ref|YP_001540213.1| - 4.8 7.6 67.4 9.4 6.6 25.4 4.4 1 1 3 4 4 4 0 Fez1 MAD PF05557.13 gi|159040961|ref|YP_001540213.1| - 7.6 4.8 72.6 2.8 6.2 36.7 3.3 1 1 1 3 3 3 0 Mitotic checkpoint protein Fib_alpha PF08702.10 gi|159040961|ref|YP_001540213.1| - 8.4 6.6 46.5 0.81 9.9 0.3 5.6 1 1 5 6 6 6 0 Fibrinogen alpha/beta chain family Lipoprotein_7 PF01540.16 gi|159040961|ref|YP_001540213.1| - 9.4 5.4 33.3 12 5.0 0.0 3.5 1 1 2 3 3 3 0 Adhesin lipoprotein AAA_17 PF13207.6 gi|159040962|ref|YP_001540214.1| - 3.4e-29 102.0 0.0 4.6e-29 101.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|159040962|ref|YP_001540214.1| - 3.7e-05 24.3 0.0 0.00022 21.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|159040962|ref|YP_001540214.1| - 0.041 13.5 1.0 0.78 9.4 1.0 2.4 1 1 0 1 1 1 0 Thymidylate kinase dNK PF01712.19 gi|159040962|ref|YP_001540214.1| - 0.049 13.5 0.0 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase PhoH PF02562.16 gi|159040964|ref|YP_001540216.1| - 0.0012 18.3 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA PF00004.29 gi|159040964|ref|YP_001540216.1| - 0.0016 18.8 0.0 0.0037 17.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|159040964|ref|YP_001540216.1| - 0.0034 16.6 0.0 0.0062 15.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.6 gi|159040964|ref|YP_001540216.1| - 0.0054 17.0 0.1 0.02 15.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159040964|ref|YP_001540216.1| - 0.0062 16.9 0.0 0.015 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|159040964|ref|YP_001540216.1| - 0.0084 15.9 0.2 0.016 14.9 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 gi|159040964|ref|YP_001540216.1| - 0.012 15.5 0.0 0.031 14.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Pox_A32 PF04665.12 gi|159040964|ref|YP_001540216.1| - 0.013 15.0 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_5 PF07728.14 gi|159040964|ref|YP_001540216.1| - 0.026 14.5 0.0 0.068 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2791 PF10923.8 gi|159040964|ref|YP_001540216.1| - 0.031 13.1 0.5 0.96 8.2 0.2 2.2 1 1 1 2 2 2 0 P-loop Domain of unknown function (DUF2791) RecA PF00154.21 gi|159040964|ref|YP_001540216.1| - 0.033 13.6 0.0 0.068 12.6 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|159040964|ref|YP_001540216.1| - 0.036 13.6 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|159040964|ref|YP_001540216.1| - 0.055 12.8 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_30 PF13604.6 gi|159040964|ref|YP_001540216.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|159040964|ref|YP_001540216.1| - 0.13 12.8 0.0 0.22 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_7 PF12775.7 gi|159040964|ref|YP_001540216.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sld5 PF05916.11 gi|159040965|ref|YP_001540217.1| - 3.1e-08 34.0 0.1 3.9e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 GINS complex protein TruB_C_2 PF16198.5 gi|159040965|ref|YP_001540217.1| - 0.067 13.3 0.4 0.26 11.5 0.1 2.0 2 0 0 2 2 2 0 tRNA pseudouridylate synthase B C-terminal domain Antig_Caf1 PF09255.10 gi|159040965|ref|YP_001540217.1| - 0.16 12.1 0.0 18 5.4 0.0 2.1 2 0 0 2 2 2 0 Caf1 Capsule antigen MCM PF00493.23 gi|159040966|ref|YP_001540218.1| - 7.2e-101 336.0 0.0 1.2e-100 335.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|159040966|ref|YP_001540218.1| - 1.1e-35 122.3 0.3 1.8e-35 121.5 0.3 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|159040966|ref|YP_001540218.1| - 2.4e-29 101.6 1.6 5.9e-29 100.3 1.6 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|159040966|ref|YP_001540218.1| - 1.9e-10 41.2 1.0 4.7e-10 40.0 1.0 1.6 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|159040966|ref|YP_001540218.1| - 2.3e-08 33.7 0.1 3.6e-05 23.2 0.0 2.6 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|159040966|ref|YP_001540218.1| - 9.8e-08 31.9 0.0 2.2e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|159040966|ref|YP_001540218.1| - 4.3e-07 30.0 0.0 1.4e-06 28.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) HypA PF01155.19 gi|159040966|ref|YP_001540218.1| - 0.00035 20.6 0.1 0.00077 19.5 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|159040966|ref|YP_001540218.1| - 0.0022 18.1 1.3 0.0044 17.1 1.3 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Sigma54_activat PF00158.26 gi|159040966|ref|YP_001540218.1| - 0.0038 16.9 0.1 0.02 14.6 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|159040966|ref|YP_001540218.1| - 0.0064 16.9 0.9 0.021 15.2 0.0 2.3 3 0 0 3 3 2 1 AAA ATPase domain Rubredoxin_2 PF18073.1 gi|159040966|ref|YP_001540218.1| - 0.013 15.3 3.6 1.4 8.7 0.8 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain AAA PF00004.29 gi|159040966|ref|YP_001540218.1| - 0.017 15.5 0.1 0.088 13.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DZR PF12773.7 gi|159040966|ref|YP_001540218.1| - 0.02 14.9 0.8 0.034 14.2 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF3987 PF13148.6 gi|159040966|ref|YP_001540218.1| - 0.024 13.6 0.7 2.9 6.8 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_7 PF12775.7 gi|159040966|ref|YP_001540218.1| - 0.075 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Bot1p PF12298.8 gi|159040966|ref|YP_001540218.1| - 0.085 13.0 0.2 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein Desulfoferrod_N PF06397.12 gi|159040966|ref|YP_001540218.1| - 0.23 11.1 2.0 0.28 10.8 0.2 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.6 gi|159040966|ref|YP_001540218.1| - 0.32 10.5 3.8 3.7 7.1 1.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain AAA_30 PF13604.6 gi|159040966|ref|YP_001540218.1| - 0.36 10.5 7.7 0.066 12.9 3.4 1.8 2 0 0 2 2 2 0 AAA domain zinc_ribbon_2 PF13240.6 gi|159040966|ref|YP_001540218.1| - 2.2 8.1 6.1 13 5.6 0.6 2.2 1 1 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|159040966|ref|YP_001540218.1| - 3.2 7.4 4.6 0.48 10.1 0.5 1.6 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Spermine_synth PF01564.17 gi|159040967|ref|YP_001540219.1| - 9.5e-36 123.0 0.2 1.5e-35 122.3 0.2 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|159040967|ref|YP_001540219.1| - 1.1e-09 38.1 0.1 2.5e-09 36.9 0.1 1.7 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_31 PF13847.6 gi|159040967|ref|YP_001540219.1| - 5.8e-06 26.2 0.0 8.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159040967|ref|YP_001540219.1| - 5.1e-05 24.0 0.0 0.00015 22.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159040967|ref|YP_001540219.1| - 0.00043 20.9 0.0 0.00075 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|159040967|ref|YP_001540219.1| - 0.00063 19.4 0.0 0.00091 18.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|159040967|ref|YP_001540219.1| - 0.011 15.6 0.0 0.029 14.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.27 gi|159040969|ref|YP_001540221.1| - 9.8e-26 90.9 0.0 2e-25 89.9 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|159040969|ref|YP_001540221.1| - 1.7e-13 51.1 1.0 1.5e-08 34.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159040969|ref|YP_001540221.1| - 0.00046 19.7 0.3 0.16 11.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|159040969|ref|YP_001540221.1| - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|159040969|ref|YP_001540221.1| - 0.005 17.4 0.2 0.0093 16.5 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159040969|ref|YP_001540221.1| - 0.015 15.7 0.2 0.037 14.5 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|159040969|ref|YP_001540221.1| - 0.015 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|159040969|ref|YP_001540221.1| - 0.024 14.9 0.0 0.13 12.5 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ETF PF01012.21 gi|159040969|ref|YP_001540221.1| - 0.035 14.0 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein domain RsgA_GTPase PF03193.16 gi|159040969|ref|YP_001540221.1| - 0.047 13.6 0.3 0.11 12.5 0.2 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_19 PF13245.6 gi|159040969|ref|YP_001540221.1| - 0.05 13.9 0.3 0.15 12.4 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|159040969|ref|YP_001540221.1| - 0.055 13.2 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|159040969|ref|YP_001540221.1| - 0.07 13.4 0.0 0.15 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain STAS PF01740.21 gi|159040969|ref|YP_001540221.1| - 0.085 12.5 0.0 0.18 11.5 0.0 1.5 1 1 0 1 1 1 0 STAS domain AAA_16 PF13191.6 gi|159040969|ref|YP_001540221.1| - 0.13 12.6 0.0 0.31 11.4 0.0 1.7 2 1 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|159040969|ref|YP_001540221.1| - 0.16 11.5 0.1 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region OrfB_Zn_ribbon PF07282.11 gi|159040970|ref|YP_001540222.1| - 2e-22 78.9 0.3 4e-22 77.9 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|159040970|ref|YP_001540222.1| - 8.5e-14 51.8 0.4 8.5e-14 51.8 0.4 2.2 2 0 0 2 2 2 1 Probable transposase Baculo_ME53 PF06061.11 gi|159040970|ref|YP_001540222.1| - 0.023 13.9 0.2 0.057 12.6 0.2 1.6 1 0 0 1 1 1 0 Baculoviridae ME53 Prok-RING_1 PF14446.6 gi|159040970|ref|YP_001540222.1| - 0.14 12.1 1.1 0.25 11.3 1.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2674 PF10879.8 gi|159040970|ref|YP_001540222.1| - 0.18 11.4 0.1 0.64 9.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2674) zf_C2H2_10 PF18414.1 gi|159040970|ref|YP_001540222.1| - 0.72 9.4 1.9 7.9 6.1 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger MFS_1 PF07690.16 gi|159040971|ref|YP_001540223.1| - 6.3e-44 150.3 51.2 6.3e-44 150.3 51.2 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|159040971|ref|YP_001540223.1| - 2e-08 33.1 14.0 8.5e-07 27.7 7.5 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector UL42 PF17638.2 gi|159040971|ref|YP_001540223.1| - 0.43 10.6 0.1 0.43 10.6 0.1 2.8 3 0 0 3 3 3 0 HCMV UL42 PaREP1 PF05942.11 gi|159040972|ref|YP_001540224.1| - 6.4e-37 126.0 3.6 1e-36 125.4 3.6 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|159040972|ref|YP_001540224.1| - 0.0001 22.5 2.3 0.0002 21.5 2.3 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) DUF357 PF04010.13 gi|159040972|ref|YP_001540224.1| - 0.00089 19.3 0.6 0.0026 17.8 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF357) F420_ligase PF01996.16 gi|159040972|ref|YP_001540224.1| - 0.0061 15.9 0.0 0.0071 15.7 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase HEPN PF05168.14 gi|159040972|ref|YP_001540224.1| - 0.029 14.5 4.6 0.069 13.3 4.6 1.7 1 1 0 1 1 1 0 HEPN domain SBP_bac_5 PF00496.22 gi|159040973|ref|YP_001540225.1| - 3.5e-27 95.3 8.0 6.2e-27 94.5 8.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159040973|ref|YP_001540225.1| - 0.098 12.5 12.0 0.15 11.9 12.0 1.3 1 0 0 1 1 1 0 Rifin Stevor PF17410.2 gi|159040973|ref|YP_001540225.1| - 0.88 9.1 11.7 1.5 8.3 11.7 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF5336 PF17270.2 gi|159040973|ref|YP_001540225.1| - 3.3 7.3 9.0 6.2 6.4 9.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5336) Alpha_L_fucos PF01120.17 gi|159040974|ref|YP_001540226.1| - 6.7e-105 351.4 0.1 9e-105 351.0 0.1 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase Fucosidase_C PF16757.5 gi|159040974|ref|YP_001540226.1| - 1.5e-06 28.7 0.0 4.6e-06 27.1 0.0 1.7 2 0 0 2 2 2 1 Alpha-L-fucosidase C-terminal domain GHL6 PF14871.6 gi|159040974|ref|YP_001540226.1| - 0.0011 19.1 0.0 0.0061 16.7 0.0 2.1 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 LodA_C PF18417.1 gi|159040974|ref|YP_001540226.1| - 0.044 13.5 0.1 0.075 12.7 0.1 1.3 1 0 0 1 1 1 0 L-lysine epsilon oxidase C-terminal domain MapZ_C2 PF18708.1 gi|159040975|ref|YP_001540227.1| - 0.017 15.4 0.2 0.02 15.1 0.2 1.2 1 0 0 1 1 1 0 MapZ extracellular C-terminal domain 2 PNP_UDP_1 PF01048.20 gi|159040976|ref|YP_001540228.1| - 2.1e-41 141.7 0.3 2.5e-41 141.5 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily FliMN_C PF01052.20 gi|159040976|ref|YP_001540228.1| - 0.0073 16.3 0.0 0.093 12.7 0.0 2.5 2 0 0 2 2 2 1 Type III flagellar switch regulator (C-ring) FliN C-term His_Phos_1 PF00300.22 gi|159040977|ref|YP_001540229.1| - 1.7e-10 41.0 0.0 2.2e-08 34.0 0.0 2.0 2 0 0 2 2 2 2 Histidine phosphatase superfamily (branch 1) Methyltr_RsmB-F PF01189.17 gi|159040978|ref|YP_001540230.1| - 1.3e-37 129.4 0.0 1.9e-37 128.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|159040978|ref|YP_001540230.1| - 5.7e-12 45.4 0.1 1.1e-11 44.5 0.1 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|159040978|ref|YP_001540230.1| - 1.9e-06 27.8 0.0 3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|159040978|ref|YP_001540230.1| - 0.00035 20.7 0.0 0.00086 19.5 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 gi|159040978|ref|YP_001540230.1| - 0.0097 16.4 0.0 0.025 15.1 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_15 PF09445.10 gi|159040978|ref|YP_001540230.1| - 0.022 14.3 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|159040978|ref|YP_001540230.1| - 0.036 13.7 0.0 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|159040978|ref|YP_001540230.1| - 0.064 14.0 0.0 0.94 10.2 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|159040978|ref|YP_001540230.1| - 0.083 12.4 0.0 0.84 9.2 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase small domain Phage_rep_O PF04492.13 gi|159040979|ref|YP_001540231.1| - 0.087 13.4 0.3 0.13 12.9 0.3 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O DUF3194 PF11419.8 gi|159040979|ref|YP_001540231.1| - 0.11 12.9 1.0 0.12 12.8 0.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3194) IF-2B PF01008.17 gi|159040980|ref|YP_001540232.1| - 7.7e-69 232.0 0.0 9.4e-69 231.7 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Inositol_P PF00459.25 gi|159040981|ref|YP_001540233.1| - 6.4e-26 91.5 0.0 7.7e-26 91.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|159040981|ref|YP_001540233.1| - 0.00024 20.6 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PfkB PF00294.24 gi|159040982|ref|YP_001540234.1| - 6.4e-10 38.8 0.0 3.9e-07 29.7 0.0 2.2 2 0 0 2 2 2 2 pfkB family carbohydrate kinase TFIIS_C PF01096.18 gi|159040983|ref|YP_001540235.1| - 8.6e-21 73.5 15.1 3.7e-20 71.5 5.0 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|159040983|ref|YP_001540235.1| - 2.8e-09 36.8 10.5 5.2e-05 23.1 2.1 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|159040983|ref|YP_001540235.1| - 9.6e-08 31.8 8.3 6.5e-05 22.8 0.6 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|159040983|ref|YP_001540235.1| - 1e-07 31.4 8.0 0.00053 19.4 1.1 2.9 2 2 0 2 2 2 2 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|159040983|ref|YP_001540235.1| - 2e-07 30.8 11.1 3.4e-07 30.0 0.6 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|159040983|ref|YP_001540235.1| - 9.2e-07 28.8 6.2 0.00038 20.4 0.3 2.5 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|159040983|ref|YP_001540235.1| - 3.1e-05 23.5 16.1 0.17 11.6 0.4 4.3 4 0 0 4 4 4 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|159040983|ref|YP_001540235.1| - 9.3e-05 21.7 14.0 0.42 10.1 0.3 4.1 4 0 0 4 4 4 3 zinc-ribbon domain DUF2387 PF09526.10 gi|159040983|ref|YP_001540235.1| - 0.00014 22.0 5.4 0.085 13.0 0.2 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.6 gi|159040983|ref|YP_001540235.1| - 0.00018 21.3 14.7 0.62 10.0 0.3 4.2 4 0 0 4 4 4 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|159040983|ref|YP_001540235.1| - 0.00019 21.7 6.6 0.054 13.9 0.5 2.3 2 0 0 2 2 2 2 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|159040983|ref|YP_001540235.1| - 0.00022 20.5 0.7 0.00022 20.5 0.7 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger Mu-like_Com PF10122.9 gi|159040983|ref|YP_001540235.1| - 0.00026 20.4 6.6 0.39 10.2 0.0 4.0 4 0 0 4 4 4 1 Mu-like prophage protein Com zf-Mss51 PF13824.6 gi|159040983|ref|YP_001540235.1| - 0.00041 20.4 7.4 0.59 10.3 2.3 3.5 3 1 0 3 3 3 1 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.9 gi|159040983|ref|YP_001540235.1| - 0.00054 20.0 13.1 2.4 8.3 0.2 4.3 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|159040983|ref|YP_001540235.1| - 0.0018 18.4 13.4 1.9 8.7 3.4 4.0 3 1 0 3 3 3 1 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|159040983|ref|YP_001540235.1| - 0.002 18.0 14.6 0.0058 16.5 2.8 3.4 2 2 0 2 2 2 1 Nudix N-terminal Zn_ribbon_recom PF13408.6 gi|159040983|ref|YP_001540235.1| - 0.0059 17.1 9.7 0.03 14.8 0.5 2.6 2 1 0 2 2 2 1 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.10 gi|159040983|ref|YP_001540235.1| - 0.014 15.1 7.8 2.2 8.1 0.1 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|159040983|ref|YP_001540235.1| - 0.016 15.1 2.5 0.69 9.8 0.1 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HalOD2 PF18547.1 gi|159040983|ref|YP_001540235.1| - 0.02 14.8 10.4 0.14 12.1 0.2 3.6 3 1 1 4 4 4 0 Halobacterial output domain 2 zf-ISL3 PF14690.6 gi|159040983|ref|YP_001540235.1| - 0.021 15.5 14.7 0.7 10.6 0.4 4.1 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.12 gi|159040983|ref|YP_001540235.1| - 0.023 14.6 4.0 0.74 9.8 0.8 3.2 2 2 0 2 2 2 0 PhnA Zinc-Ribbon YhfH PF14149.6 gi|159040983|ref|YP_001540235.1| - 0.026 14.5 8.1 5.2 7.1 0.1 4.2 4 0 0 4 4 4 0 YhfH-like protein zf-RING_7 PF02591.15 gi|159040983|ref|YP_001540235.1| - 0.028 14.6 6.5 12 6.2 0.0 4.0 4 0 0 4 4 4 0 C4-type zinc ribbon domain C1_1 PF00130.22 gi|159040983|ref|YP_001540235.1| - 0.03 14.2 0.5 0.03 14.2 0.5 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|159040983|ref|YP_001540235.1| - 0.03 14.3 7.6 0.84 9.7 0.7 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|159040983|ref|YP_001540235.1| - 0.048 13.8 1.5 0.048 13.8 1.5 2.9 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_10 PF10058.9 gi|159040983|ref|YP_001540235.1| - 0.067 12.9 13.5 0.16 11.7 3.0 3.4 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ACC PF17848.1 gi|159040983|ref|YP_001540235.1| - 0.07 13.2 10.9 8.9 6.5 0.2 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|159040983|ref|YP_001540235.1| - 0.095 12.3 13.8 6.8 6.4 0.2 4.2 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|159040983|ref|YP_001540235.1| - 0.1 12.7 11.2 0.3 11.1 0.0 3.8 1 1 4 5 5 5 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|159040983|ref|YP_001540235.1| - 0.1 12.6 5.2 0.69 9.9 0.1 2.7 2 1 1 3 3 3 0 zinc-ribbons TackOD1 PF18551.1 gi|159040983|ref|YP_001540235.1| - 0.11 12.2 4.4 9.3 5.9 4.4 2.9 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 DUF4379 PF14311.6 gi|159040983|ref|YP_001540235.1| - 0.11 12.9 0.6 0.11 12.9 0.6 3.8 3 1 0 4 4 3 0 Probable Zinc-ribbon domain Rubredoxin PF00301.20 gi|159040983|ref|YP_001540235.1| - 0.11 12.5 16.1 1.3 9.2 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin RNHCP PF12647.7 gi|159040983|ref|YP_001540235.1| - 0.13 12.3 6.8 0.22 11.5 1.9 2.7 1 1 1 2 2 2 0 RNHCP domain Cys_rich_KTR PF14205.6 gi|159040983|ref|YP_001540235.1| - 0.13 12.1 4.2 17 5.3 0.1 3.4 3 0 0 3 3 3 0 Cysteine-rich KTR FdhE PF04216.12 gi|159040983|ref|YP_001540235.1| - 0.13 12.1 0.4 0.13 12.1 0.4 2.3 2 1 1 3 3 2 0 Protein involved in formate dehydrogenase formation RecR PF02132.15 gi|159040983|ref|YP_001540235.1| - 0.14 11.8 8.5 4.3 7.0 0.1 3.9 4 0 0 4 4 4 0 RecR protein T4_baseplate PF12322.8 gi|159040983|ref|YP_001540235.1| - 0.14 11.6 2.4 8.2 5.8 0.3 2.5 1 1 2 3 3 3 0 T4 bacteriophage base plate protein zf_C2H2_10 PF18414.1 gi|159040983|ref|YP_001540235.1| - 0.15 11.6 13.3 0.83 9.2 0.2 3.9 4 0 0 4 4 4 0 C2H2 type zinc-finger DUF35_N PF12172.8 gi|159040983|ref|YP_001540235.1| - 0.16 11.8 12.9 22 5.0 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_9 PF14369.6 gi|159040983|ref|YP_001540235.1| - 0.2 11.9 7.9 2.6 8.4 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon Zn_Tnp_IS1 PF03811.13 gi|159040983|ref|YP_001540235.1| - 0.23 11.2 15.8 2.4 8.0 0.1 3.8 2 2 1 3 3 3 0 InsA N-terminal domain Zn_Tnp_IS91 PF14319.6 gi|159040983|ref|YP_001540235.1| - 0.3 11.1 9.3 2.9 8.0 0.5 3.2 2 2 1 3 3 3 0 Transposase zinc-binding domain DpnI PF06044.12 gi|159040983|ref|YP_001540235.1| - 0.44 10.2 5.4 1.1 8.9 0.6 2.2 1 1 0 2 2 2 0 Dam-replacing family zf-NADH-PPase PF09297.11 gi|159040983|ref|YP_001540235.1| - 0.49 10.1 16.9 0.13 11.9 3.9 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Opy2 PF09463.10 gi|159040983|ref|YP_001540235.1| - 0.52 10.7 8.7 1.4 9.3 0.0 3.7 4 0 0 4 4 4 0 Opy2 protein Terminase_GpA PF05876.12 gi|159040983|ref|YP_001540235.1| - 0.63 8.5 7.2 0.75 8.3 1.3 2.1 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zf-HIT PF04438.16 gi|159040983|ref|YP_001540235.1| - 0.63 10.0 16.3 6.2 6.8 0.2 4.1 4 0 0 4 4 4 0 HIT zinc finger tRNA-synt_1f PF01921.18 gi|159040983|ref|YP_001540235.1| - 0.64 8.9 2.3 3.3 6.5 0.2 2.0 1 1 0 2 2 2 0 tRNA synthetases class I (K) Ogr_Delta PF04606.12 gi|159040983|ref|YP_001540235.1| - 0.75 9.8 13.8 21 5.2 0.2 3.6 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger zinc_ribbon_5 PF13719.6 gi|159040983|ref|YP_001540235.1| - 0.76 9.6 11.9 4.6 7.1 3.4 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|159040983|ref|YP_001540235.1| - 0.77 9.5 22.0 0.57 9.9 0.8 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain NRDD PF13597.6 gi|159040983|ref|YP_001540235.1| - 0.81 8.4 5.0 0.49 9.1 0.2 2.1 2 1 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_13 PF09855.9 gi|159040983|ref|YP_001540235.1| - 0.84 9.9 14.3 12 6.1 0.1 4.0 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-Sec23_Sec24 PF04810.15 gi|159040983|ref|YP_001540235.1| - 1 9.5 11.0 0.28 11.3 1.7 3.2 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger DUF2072 PF09845.9 gi|159040983|ref|YP_001540235.1| - 1.2 9.4 8.0 8.1 6.7 0.0 2.9 1 1 1 3 3 3 0 Zn-ribbon containing protein zf-C2H2_3 PF13878.6 gi|159040983|ref|YP_001540235.1| - 1.3 8.9 7.7 32 4.5 0.1 4.0 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO Baculo_LEF5_C PF11792.8 gi|159040983|ref|YP_001540235.1| - 1.4 8.7 0.0 1.4 8.7 0.0 3.5 4 0 0 4 4 4 0 Baculoviridae late expression factor 5 C-terminal domain zf-Di19 PF05605.12 gi|159040983|ref|YP_001540235.1| - 1.4 9.2 5.6 5.1 7.5 0.0 2.9 3 0 0 3 3 2 0 Drought induced 19 protein (Di19), zinc-binding Ribosomal_S27e PF01667.17 gi|159040983|ref|YP_001540235.1| - 2.2 8.1 9.4 3.9 7.2 0.7 3.4 2 2 1 3 3 3 0 Ribosomal protein S27 zf-C4_Topoisom PF01396.19 gi|159040983|ref|YP_001540235.1| - 2.5 8.0 14.5 5.7 6.8 0.2 3.7 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-LITAF-like PF10601.9 gi|159040983|ref|YP_001540235.1| - 2.5 8.4 13.3 39 4.6 3.3 3.9 1 1 2 4 4 4 0 LITAF-like zinc ribbon domain zf-ZPR1 PF03367.13 gi|159040983|ref|YP_001540235.1| - 2.7 7.8 4.3 5 7.0 0.1 2.6 2 1 1 3 3 3 0 ZPR1 zinc-finger domain zf-H2C2_2 PF13465.6 gi|159040983|ref|YP_001540235.1| - 3.3 8.3 13.2 8.7 7.0 0.2 4.1 4 0 0 4 4 4 0 Zinc-finger double domain Rpr2 PF04032.16 gi|159040983|ref|YP_001540235.1| - 4.2 7.7 8.4 85 3.5 8.4 2.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-tcix PF14952.6 gi|159040983|ref|YP_001540235.1| - 4.8 6.9 19.1 1.5 8.5 0.7 4.1 3 1 1 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding VP_N-CPKC PF11475.8 gi|159040983|ref|YP_001540235.1| - 4.9 7.2 9.9 1.5 8.8 0.1 3.4 4 0 0 4 4 3 0 Virion protein N terminal domain zn-ribbon_14 PF16503.5 gi|159040983|ref|YP_001540235.1| - 5 6.7 19.8 5.1 6.7 2.0 4.6 5 0 0 5 5 5 0 Zinc-ribbon Zn_ribbon_SprT PF17283.2 gi|159040983|ref|YP_001540235.1| - 5.6 7.0 22.9 3.2 7.8 6.7 3.5 2 2 1 3 3 3 0 SprT-like zinc ribbon domain zf-CCHC_5 PF14787.6 gi|159040983|ref|YP_001540235.1| - 5.7 6.7 14.5 16 5.3 0.0 4.1 4 0 0 4 4 4 0 GAG-polyprotein viral zinc-finger DUF3268 PF11672.8 gi|159040983|ref|YP_001540235.1| - 6.1 7.2 8.4 7.9 6.8 0.8 2.6 2 1 0 2 2 2 0 zinc-finger-containing domain NOB1_Zn_bind PF08772.11 gi|159040983|ref|YP_001540235.1| - 6.9 6.9 15.0 3.3 7.9 0.7 3.8 2 1 1 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like C1_2 PF03107.16 gi|159040983|ref|YP_001540235.1| - 7.2 7.0 10.1 30 5.0 2.7 2.9 2 1 0 2 2 2 0 C1 domain DUF1610 PF07754.11 gi|159040983|ref|YP_001540235.1| - 8.4 6.5 20.3 3.7 7.6 0.5 4.4 5 0 0 5 5 4 0 Domain of unknown function (DUF1610) zinc_ribbon_15 PF17032.5 gi|159040983|ref|YP_001540235.1| - 9.5 7.1 12.4 64 4.4 0.6 3.6 1 1 0 2 2 2 0 zinc-ribbon family SurE PF01975.17 gi|159040984|ref|YP_001540236.1| - 3.3e-40 137.9 0.0 4e-40 137.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Glyco_transf_4 PF13439.6 gi|159040984|ref|YP_001540236.1| - 0.072 13.1 0.0 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase Family 4 GPP34 PF05719.11 gi|159040985|ref|YP_001540237.1| - 0.0043 17.1 0.0 0.0058 16.7 0.0 1.2 1 0 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) Baculo_ME53 PF06061.11 gi|159040985|ref|YP_001540237.1| - 0.066 12.4 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 Rad51 PF08423.11 gi|159040986|ref|YP_001540238.1| - 0.17 11.1 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Rad51 OrfB_IS605 PF01385.19 gi|159040988|ref|YP_001540240.1| - 4.8e-32 110.7 0.0 1e-31 109.6 0.0 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|159040988|ref|YP_001540240.1| - 8.1e-21 73.7 0.0 2.6e-20 72.1 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|159040988|ref|YP_001540240.1| - 0.0037 17.6 0.0 0.0087 16.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction resolvase SPT16 PF08644.11 gi|159040988|ref|YP_001540240.1| - 0.21 11.8 2.6 1.2 9.3 0.6 2.4 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) Fib_alpha PF08702.10 gi|159040989|ref|YP_001540241.1| - 6.9e-08 32.8 1.1 0.00024 21.3 0.7 2.2 2 0 0 2 2 2 2 Fibrinogen alpha/beta chain family Baculo_PEP_C PF04513.12 gi|159040989|ref|YP_001540241.1| - 1.1e-06 28.8 6.2 7.8e-05 22.7 3.4 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|159040989|ref|YP_001540241.1| - 5.2e-06 26.5 1.1 0.012 15.6 0.4 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF1664) DASH_Dad2 PF08654.10 gi|159040989|ref|YP_001540241.1| - 6.1e-06 26.6 4.6 0.26 11.7 0.0 3.2 1 1 2 3 3 3 2 DASH complex subunit Dad2 Apolipoprotein PF01442.18 gi|159040989|ref|YP_001540241.1| - 1.1e-05 25.4 1.6 5.1e-05 23.2 1.6 2.0 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain COG2 PF06148.11 gi|159040989|ref|YP_001540241.1| - 1.3e-05 25.3 4.4 0.0014 18.7 0.1 3.0 2 1 1 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.12 gi|159040989|ref|YP_001540241.1| - 2.9e-05 24.1 2.2 0.0018 18.3 1.1 2.1 2 0 0 2 2 2 1 Laminin Domain II TelA PF05816.11 gi|159040989|ref|YP_001540241.1| - 3.4e-05 23.1 2.7 0.014 14.5 1.7 2.1 1 1 1 2 2 2 2 Toxic anion resistance protein (TelA) CdvA PF18822.1 gi|159040989|ref|YP_001540241.1| - 5e-05 23.1 7.6 0.14 12.0 0.7 3.2 1 1 2 3 3 3 1 CdvA-like coiled-coil domain Seryl_tRNA_N PF02403.22 gi|159040989|ref|YP_001540241.1| - 9.2e-05 22.6 1.3 0.15 12.3 0.1 2.4 2 1 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain EzrA PF06160.12 gi|159040989|ref|YP_001540241.1| - 0.00026 19.3 2.5 0.002 16.4 1.1 1.9 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Filament PF00038.21 gi|159040989|ref|YP_001540241.1| - 0.00054 19.6 2.5 0.0065 16.1 2.4 1.9 1 1 0 1 1 1 1 Intermediate filament protein Syntaxin_2 PF14523.6 gi|159040989|ref|YP_001540241.1| - 0.00062 20.1 2.7 1.1 9.7 0.0 2.7 1 1 1 2 2 2 1 Syntaxin-like protein RmuC PF02646.16 gi|159040989|ref|YP_001540241.1| - 0.00069 18.8 3.1 0.1 11.7 0.1 2.8 1 1 2 3 3 3 1 RmuC family DUF4795 PF16043.5 gi|159040989|ref|YP_001540241.1| - 0.00074 19.2 4.9 0.052 13.2 4.9 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) BLOC1_2 PF10046.9 gi|159040989|ref|YP_001540241.1| - 0.00075 19.7 5.5 0.099 12.9 0.1 3.2 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.12 gi|159040989|ref|YP_001540241.1| - 0.00076 19.5 1.4 0.26 11.4 0.1 2.7 1 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein TolA_bind_tri PF16331.5 gi|159040989|ref|YP_001540241.1| - 0.00078 19.5 10.0 0.039 14.0 0.0 3.2 2 1 1 3 3 3 1 TolA binding protein trimerisation CorA PF01544.18 gi|159040989|ref|YP_001540241.1| - 0.00086 18.7 3.4 0.0011 18.4 2.8 1.5 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF948 PF06103.11 gi|159040989|ref|YP_001540241.1| - 0.00095 19.4 2.3 0.18 12.1 2.0 2.8 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|159040989|ref|YP_001540241.1| - 0.00095 18.1 3.5 0.042 12.7 0.9 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein STAT_alpha PF01017.20 gi|159040989|ref|YP_001540241.1| - 0.0014 18.6 0.4 0.0028 17.6 0.2 1.5 1 1 0 1 1 1 1 STAT protein, all-alpha domain FlaC_arch PF05377.11 gi|159040989|ref|YP_001540241.1| - 0.0015 18.9 9.1 1.9 9.0 0.2 4.3 2 1 2 4 4 4 1 Flagella accessory protein C (FlaC) Sec34 PF04136.15 gi|159040989|ref|YP_001540241.1| - 0.0016 18.4 1.0 0.062 13.2 0.5 2.2 2 0 0 2 2 2 1 Sec34-like family GLE1 PF07817.13 gi|159040989|ref|YP_001540241.1| - 0.0018 17.5 0.1 0.0095 15.2 0.1 1.8 1 1 1 2 2 2 1 GLE1-like protein PspA_IM30 PF04012.12 gi|159040989|ref|YP_001540241.1| - 0.002 17.7 0.4 0.01 15.5 0.1 2.0 1 1 1 2 2 2 1 PspA/IM30 family DegS PF05384.11 gi|159040989|ref|YP_001540241.1| - 0.0022 17.5 3.3 0.013 15.0 0.6 2.5 1 1 1 2 2 2 2 Sensor protein DegS Exonuc_VII_L PF02601.15 gi|159040989|ref|YP_001540241.1| - 0.0027 17.3 0.6 0.0036 16.9 0.6 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit TMF_DNA_bd PF12329.8 gi|159040989|ref|YP_001540241.1| - 0.0031 17.5 6.6 0.13 12.3 0.1 3.4 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding FliJ PF02050.16 gi|159040989|ref|YP_001540241.1| - 0.0036 17.5 1.4 1.4 9.2 1.0 2.9 2 1 0 2 2 2 1 Flagellar FliJ protein ApoLp-III PF07464.11 gi|159040989|ref|YP_001540241.1| - 0.0037 17.4 0.1 0.53 10.4 0.0 2.3 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) T4SS PF07996.11 gi|159040989|ref|YP_001540241.1| - 0.0038 17.7 0.5 0.074 13.5 0.4 2.1 1 1 1 2 2 2 1 Type IV secretion system proteins APG6_N PF17675.1 gi|159040989|ref|YP_001540241.1| - 0.0044 17.5 1.8 0.37 11.3 1.7 2.5 1 1 0 1 1 1 1 Apg6 coiled-coil region SKA2 PF16740.5 gi|159040989|ref|YP_001540241.1| - 0.0044 16.8 1.4 1.6 8.5 0.1 2.8 1 1 2 3 3 3 1 Spindle and kinetochore-associated protein 2 Syntaxin-6_N PF09177.11 gi|159040989|ref|YP_001540241.1| - 0.0052 17.3 6.0 5.4 7.6 2.5 3.2 1 1 0 2 2 2 0 Syntaxin 6, N-terminal IFT57 PF10498.9 gi|159040989|ref|YP_001540241.1| - 0.006 15.6 3.5 0.023 13.7 1.2 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 CCDC-167 PF15188.6 gi|159040989|ref|YP_001540241.1| - 0.0063 16.8 4.6 0.019 15.3 1.4 3.0 2 2 0 2 2 2 1 Coiled-coil domain-containing protein 167 YtxH PF12732.7 gi|159040989|ref|YP_001540241.1| - 0.007 16.9 0.0 4.1 8.0 0.0 2.7 2 1 0 2 2 2 0 YtxH-like protein Latarcin PF10279.9 gi|159040989|ref|YP_001540241.1| - 0.0074 16.7 6.0 1.1 9.7 1.4 3.1 2 1 1 3 3 3 1 Latarcin precursor ZapB PF06005.12 gi|159040989|ref|YP_001540241.1| - 0.0074 16.7 4.6 0.046 14.2 2.6 2.5 1 1 1 2 2 2 1 Cell division protein ZapB Uso1_p115_C PF04871.13 gi|159040989|ref|YP_001540241.1| - 0.01 16.2 0.9 4.3 7.7 0.1 2.8 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF883 PF05957.13 gi|159040989|ref|YP_001540241.1| - 0.01 16.4 0.2 4.1 8.1 0.1 2.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Tektin PF03148.14 gi|159040989|ref|YP_001540241.1| - 0.011 14.6 3.4 1.4 7.6 0.4 2.5 2 1 0 2 2 2 0 Tektin family Prefoldin PF02996.17 gi|159040989|ref|YP_001540241.1| - 0.011 15.6 3.2 19 5.2 0.1 3.4 2 1 1 3 3 3 0 Prefoldin subunit ING PF12998.7 gi|159040989|ref|YP_001540241.1| - 0.011 16.3 1.0 0.19 12.4 0.9 2.5 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding DUF3450 PF11932.8 gi|159040989|ref|YP_001540241.1| - 0.012 14.9 4.0 0.27 10.5 1.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Herpes_UL6 PF01763.16 gi|159040989|ref|YP_001540241.1| - 0.013 14.1 1.8 0.14 10.7 0.5 1.9 1 1 1 2 2 2 0 Herpesvirus UL6 like Cas_DxTHG PF09455.10 gi|159040989|ref|YP_001540241.1| - 0.014 15.0 0.2 0.026 14.1 0.2 1.4 1 1 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family Tup_N PF08581.10 gi|159040989|ref|YP_001540241.1| - 0.014 15.6 5.2 1.1 9.6 0.4 3.3 2 1 2 4 4 4 0 Tup N-terminal UPF0242 PF06785.11 gi|159040989|ref|YP_001540241.1| - 0.015 15.4 0.8 0.024 14.8 0.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FapA PF03961.13 gi|159040989|ref|YP_001540241.1| - 0.016 13.9 3.2 0.21 10.2 1.6 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A FlgN PF05130.12 gi|159040989|ref|YP_001540241.1| - 0.016 15.7 3.0 1.3 9.6 0.0 2.2 1 1 1 2 2 2 0 FlgN protein Prominin PF05478.11 gi|159040989|ref|YP_001540241.1| - 0.018 13.0 5.4 0.15 10.0 2.4 2.0 1 1 1 2 2 2 0 Prominin CK2S PF15011.6 gi|159040989|ref|YP_001540241.1| - 0.02 14.8 3.5 1.5 8.7 0.1 2.6 1 1 1 2 2 2 0 Casein Kinase 2 substrate IF-2B PF01008.17 gi|159040989|ref|YP_001540241.1| - 0.022 13.9 1.5 0.23 10.6 0.4 2.0 2 0 0 2 2 2 0 Initiation factor 2 subunit family DUF5082 PF16888.5 gi|159040989|ref|YP_001540241.1| - 0.024 14.9 4.4 4.6 7.5 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) NBD94 PF16830.5 gi|159040989|ref|YP_001540241.1| - 0.025 15.0 2.7 0.8 10.1 0.2 2.8 2 1 0 2 2 2 0 Nucleotide-Binding Domain 94 of RH bZIP_1 PF00170.21 gi|159040989|ref|YP_001540241.1| - 0.03 14.4 9.0 1.1 9.4 0.5 3.1 2 1 1 3 3 3 0 bZIP transcription factor Phe_tRNA-synt_N PF02912.18 gi|159040989|ref|YP_001540241.1| - 0.03 14.3 1.2 1.5 8.8 0.0 2.8 3 1 0 3 3 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain DUF4200 PF13863.6 gi|159040989|ref|YP_001540241.1| - 0.031 14.7 0.6 0.39 11.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Snapin_Pallidin PF14712.6 gi|159040989|ref|YP_001540241.1| - 0.032 14.7 4.7 4.6 7.7 1.6 3.1 1 1 2 3 3 3 0 Snapin/Pallidin Vps5 PF09325.10 gi|159040989|ref|YP_001540241.1| - 0.032 13.8 6.6 1.3 8.5 0.1 2.1 1 1 1 2 2 2 0 Vps5 C terminal like OmpH PF03938.14 gi|159040989|ref|YP_001540241.1| - 0.033 14.5 0.1 2.2 8.6 0.0 2.2 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Lipoprotein_7 PF01540.16 gi|159040989|ref|YP_001540241.1| - 0.034 13.5 0.9 2.3 7.5 0.1 2.1 1 1 1 2 2 2 0 Adhesin lipoprotein F_actin_bind PF08919.10 gi|159040989|ref|YP_001540241.1| - 0.034 14.2 4.0 0.87 9.7 0.1 2.5 2 1 0 2 2 2 0 F-actin binding DivIVA PF05103.13 gi|159040989|ref|YP_001540241.1| - 0.035 14.2 4.5 0.79 9.8 0.3 2.6 2 1 0 2 2 2 0 DivIVA protein CLZ PF16526.5 gi|159040989|ref|YP_001540241.1| - 0.036 14.4 8.9 2.9 8.3 0.1 3.2 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ZapA PF05164.13 gi|159040989|ref|YP_001540241.1| - 0.039 14.4 5.8 9 6.8 0.0 3.0 1 1 1 2 2 2 0 Cell division protein ZapA Rab5-bind PF09311.11 gi|159040989|ref|YP_001540241.1| - 0.039 13.3 3.3 0.46 9.8 1.4 2.0 2 0 0 2 2 2 0 Rabaptin-like protein TMPIT PF07851.13 gi|159040989|ref|YP_001540241.1| - 0.053 12.8 0.2 1.2 8.3 0.1 2.1 1 1 1 2 2 2 0 TMPIT-like protein HSBP1 PF06825.12 gi|159040989|ref|YP_001540241.1| - 0.054 13.4 7.8 0.12 12.3 1.4 3.5 3 1 0 3 3 3 0 Heat shock factor binding protein 1 FadA PF09403.10 gi|159040989|ref|YP_001540241.1| - 0.055 14.0 2.1 11 6.6 0.3 3.6 1 1 0 2 2 2 0 Adhesion protein FadA KIP1 PF07765.12 gi|159040989|ref|YP_001540241.1| - 0.055 13.6 2.1 5.7 7.1 0.0 3.1 2 1 1 3 3 3 0 KIP1-like protein Flagellin_C PF00700.21 gi|159040989|ref|YP_001540241.1| - 0.064 13.6 4.0 1.1 9.7 0.1 3.2 1 1 3 4 4 3 0 Bacterial flagellin C-terminal helical region DUF3552 PF12072.8 gi|159040989|ref|YP_001540241.1| - 0.066 12.6 2.2 0.24 10.8 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) MscS_porin PF12795.7 gi|159040989|ref|YP_001540241.1| - 0.072 12.6 3.5 2.5 7.6 2.3 2.4 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain T3SS_needle_E PF08988.10 gi|159040989|ref|YP_001540241.1| - 0.075 13.2 0.1 0.5 10.5 0.0 2.3 2 1 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle Mce4_CUP1 PF11887.8 gi|159040989|ref|YP_001540241.1| - 0.079 12.4 2.6 0.65 9.4 0.4 2.1 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative LPP PF04728.13 gi|159040989|ref|YP_001540241.1| - 0.085 13.3 5.7 8.4 6.9 0.2 3.8 3 2 0 3 3 3 0 Lipoprotein leucine-zipper Trimer_CC PF08954.11 gi|159040989|ref|YP_001540241.1| - 0.097 12.2 6.7 1.8 8.2 0.7 3.6 3 1 0 3 3 3 0 Trimerisation motif DUF2203 PF09969.9 gi|159040989|ref|YP_001540241.1| - 0.12 13.2 0.4 3 8.6 0.1 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) V-ATPase_C PF03223.15 gi|159040989|ref|YP_001540241.1| - 0.12 11.8 1.4 4.7 6.5 0.4 2.1 1 1 1 2 2 2 0 V-ATPase subunit C FliT PF05400.13 gi|159040989|ref|YP_001540241.1| - 0.14 13.0 5.4 1.4 9.8 0.2 3.6 1 1 2 3 3 3 0 Flagellar protein FliT YscO PF07321.12 gi|159040989|ref|YP_001540241.1| - 0.17 11.8 0.9 8.3 6.3 0.1 2.4 2 1 1 3 3 2 0 Type III secretion protein YscO HalX PF08663.10 gi|159040989|ref|YP_001540241.1| - 0.18 12.1 6.1 17 5.8 0.0 4.2 3 2 1 4 4 4 0 HalX domain HMMR_N PF15905.5 gi|159040989|ref|YP_001540241.1| - 0.19 11.2 4.6 1.1 8.6 0.9 2.2 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF4763 PF15960.5 gi|159040989|ref|YP_001540241.1| - 0.24 10.7 2.8 1.6 8.0 0.8 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) Csm1_N PF18504.1 gi|159040989|ref|YP_001540241.1| - 0.33 11.3 5.1 2.3 8.6 0.1 3.3 2 1 2 4 4 4 0 Csm1 N-terminal domain TPD52 PF04201.15 gi|159040989|ref|YP_001540241.1| - 0.42 10.2 4.2 3.8 7.1 0.1 2.7 1 1 1 3 3 3 0 Tumour protein D52 family DASH_Duo1 PF08651.10 gi|159040989|ref|YP_001540241.1| - 0.7 9.7 5.1 3.3 7.5 0.5 3.0 2 1 1 3 3 3 0 DASH complex subunit Duo1 COMP PF11598.8 gi|159040989|ref|YP_001540241.1| - 0.85 10.1 4.9 20 5.8 0.5 3.9 4 1 0 4 4 3 0 Cartilage oligomeric matrix protein TSC22 PF01166.18 gi|159040989|ref|YP_001540241.1| - 1.8 9.0 7.3 2.3 8.6 0.4 3.2 2 1 1 3 3 3 0 TSC-22/dip/bun family Mrr_cat PF04471.12 gi|159040990|ref|YP_001540242.1| - 3.3e-05 23.9 0.0 5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease GP46 PF07409.12 gi|159040990|ref|YP_001540242.1| - 0.022 14.5 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 Phage protein GP46 NERD PF08378.11 gi|159040990|ref|YP_001540242.1| - 0.041 14.3 0.1 0.069 13.6 0.1 1.4 1 0 0 1 1 1 0 Nuclease-related domain Glyco_hydro_1 PF00232.18 gi|159040991|ref|YP_001540243.1| - 3.3e-62 210.4 7.8 6.4e-55 186.4 4.4 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Methyltransf_11 PF08241.12 gi|159040992|ref|YP_001540244.1| - 1.6e-13 51.1 0.0 3.1e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159040992|ref|YP_001540244.1| - 8.4e-07 29.6 0.0 1.7e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159040992|ref|YP_001540244.1| - 3e-05 23.9 0.0 8.5e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159040992|ref|YP_001540244.1| - 0.00014 22.5 0.0 0.0003 21.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|159040992|ref|YP_001540244.1| - 0.00058 19.5 0.0 0.00094 18.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|159040992|ref|YP_001540244.1| - 0.0013 18.6 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159040992|ref|YP_001540244.1| - 0.0092 15.3 0.0 0.014 14.7 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|159040992|ref|YP_001540244.1| - 0.06 13.2 0.1 0.13 12.0 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase PadR PF03551.14 gi|159040994|ref|YP_001540246.1| - 9.7e-17 60.7 0.0 1.5e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|159040994|ref|YP_001540246.1| - 0.0065 16.2 0.5 0.029 14.1 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4364) RTP PF02334.16 gi|159040994|ref|YP_001540246.1| - 0.029 15.0 0.0 0.048 14.3 0.0 1.4 1 0 0 1 1 1 0 Replication terminator protein HTH_42 PF06224.12 gi|159040994|ref|YP_001540246.1| - 0.064 12.8 0.0 0.068 12.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HMG-CoA_red PF00368.18 gi|159040995|ref|YP_001540247.1| - 5.4e-129 430.4 0.4 6.2e-129 430.2 0.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Fic PF02661.18 gi|159040995|ref|YP_001540247.1| - 0.036 15.0 0.0 0.089 13.7 0.0 1.7 1 0 0 1 1 1 0 Fic/DOC family Hexapep PF00132.24 gi|159040996|ref|YP_001540248.1| - 5.8e-28 95.6 33.1 1.6e-07 30.7 2.6 5.4 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|159040996|ref|YP_001540248.1| - 8.2e-15 54.3 31.3 4.6e-06 26.3 6.3 6.2 4 2 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase Rubrerythrin PF02915.17 gi|159040997|ref|YP_001540249.1| - 0.012 16.0 0.8 0.49 10.8 0.7 2.3 1 1 1 2 2 2 0 Rubrerythrin TolA_bind_tri PF16331.5 gi|159040997|ref|YP_001540249.1| - 0.083 13.0 0.8 0.22 11.6 0.2 2.0 2 0 0 2 2 2 0 TolA binding protein trimerisation Lactamase_B_2 PF12706.7 gi|159040998|ref|YP_001540250.1| - 1.1e-23 83.8 0.1 1.3e-23 83.6 0.1 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|159040998|ref|YP_001540250.1| - 2.4e-10 40.8 1.3 5.2e-10 39.7 1.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|159040998|ref|YP_001540250.1| - 1.7e-06 28.1 0.0 4e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|159040998|ref|YP_001540250.1| - 0.026 14.0 0.0 0.32 10.4 0.0 2.0 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain NAD_binding_10 PF13460.6 gi|159040998|ref|YP_001540250.1| - 0.036 13.9 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 NAD(P)H-binding IF3_N PF05198.16 gi|159040998|ref|YP_001540250.1| - 0.097 13.0 0.0 0.26 11.6 0.0 1.8 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Pilin_N PF07790.11 gi|159041001|ref|YP_001540253.1| - 0.012 16.5 1.1 0.024 15.5 1.1 1.6 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF4479 PF14794.6 gi|159041001|ref|YP_001540253.1| - 0.035 14.0 0.1 0.064 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Stevor PF17410.2 gi|159041001|ref|YP_001540253.1| - 3.2 7.2 3.9 2.1 7.8 0.7 1.9 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame Col_cuticle_N PF01484.17 gi|159041002|ref|YP_001540254.1| - 1.2 9.2 4.3 2.5 8.2 4.3 1.5 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain DUF4225 PF13988.6 gi|159041003|ref|YP_001540255.1| - 0.046 13.3 0.5 0.092 12.3 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) CoA_trans PF01144.23 gi|159041004|ref|YP_001540256.1| - 4.6e-37 127.5 0.5 3.8e-34 118.0 0.0 3.0 3 0 0 3 3 3 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|159041004|ref|YP_001540256.1| - 0.0013 17.2 0.0 0.0019 16.6 0.0 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter UbiD PF01977.16 gi|159041005|ref|YP_001540257.1| - 2.4e-95 319.8 0.1 2.7e-95 319.6 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase T2SSF PF00482.23 gi|159041006|ref|YP_001540258.1| - 0.0076 16.2 0.9 0.0076 16.2 0.9 2.5 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|159041007|ref|YP_001540259.1| - 1.4e-52 178.5 0.0 2.3e-52 177.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|159041007|ref|YP_001540259.1| - 9.6e-05 23.0 1.7 0.00019 22.0 0.1 2.0 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|159041007|ref|YP_001540259.1| - 0.00011 22.7 0.0 0.00034 21.1 0.0 1.8 2 0 0 2 2 1 1 ABC transporter AAA_29 PF13555.6 gi|159041007|ref|YP_001540259.1| - 0.00018 21.2 0.0 0.00044 19.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|159041007|ref|YP_001540259.1| - 0.00073 20.0 0.0 0.0028 18.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|159041007|ref|YP_001540259.1| - 0.00084 19.2 0.2 0.0017 18.2 0.2 1.5 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system cobW PF02492.19 gi|159041007|ref|YP_001540259.1| - 0.0019 17.8 0.3 0.004 16.8 0.1 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|159041007|ref|YP_001540259.1| - 0.0042 17.0 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|159041007|ref|YP_001540259.1| - 0.0055 17.0 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|159041007|ref|YP_001540259.1| - 0.0057 16.9 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|159041007|ref|YP_001540259.1| - 0.01 15.4 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|159041007|ref|YP_001540259.1| - 0.012 15.7 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|159041007|ref|YP_001540259.1| - 0.018 15.6 0.2 0.12 13.0 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_2 PF07724.14 gi|159041007|ref|YP_001540259.1| - 0.024 14.8 0.0 0.33 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) MobB PF03205.14 gi|159041007|ref|YP_001540259.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 gi|159041007|ref|YP_001540259.1| - 0.026 14.5 0.5 0.43 10.6 0.1 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|159041007|ref|YP_001540259.1| - 0.028 14.4 0.8 0.2 11.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 gi|159041007|ref|YP_001540259.1| - 0.06 12.8 0.0 0.25 10.7 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|159041007|ref|YP_001540259.1| - 0.075 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|159041007|ref|YP_001540259.1| - 0.077 12.6 0.1 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|159041007|ref|YP_001540259.1| - 0.083 12.2 0.1 0.21 10.9 0.1 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|159041007|ref|YP_001540259.1| - 0.084 12.1 0.1 0.86 8.8 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.17 gi|159041007|ref|YP_001540259.1| - 0.087 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|159041007|ref|YP_001540259.1| - 0.091 11.7 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 gi|159041007|ref|YP_001540259.1| - 0.13 12.2 0.1 0.32 10.9 0.1 1.6 1 0 0 1 1 1 0 NACHT domain GTP_EFTU PF00009.27 gi|159041007|ref|YP_001540259.1| - 0.32 10.5 0.9 0.46 10.0 0.1 1.6 2 0 0 2 2 1 0 Elongation factor Tu GTP binding domain T2SSF PF00482.23 gi|159041008|ref|YP_001540260.1| - 3e-12 46.6 2.0 3e-12 46.6 2.0 2.6 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F Oxidored_q4 PF00507.19 gi|159041009|ref|YP_001540261.1| - 1.1e-06 28.7 0.8 1.1e-06 28.7 0.8 1.8 1 1 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Complex1_30kDa PF00329.19 gi|159041010|ref|YP_001540262.1| - 5.8e-22 78.6 0.0 1e-21 77.8 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|159041010|ref|YP_001540262.1| - 5.7e-21 74.7 0.2 8.6e-21 74.1 0.2 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|159041011|ref|YP_001540263.1| - 2.6e-88 295.6 0.0 3.5e-88 295.2 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDK PF00334.19 gi|159041012|ref|YP_001540264.1| - 7.6e-43 145.8 0.0 9.5e-25 87.2 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Aldo_ket_red PF00248.21 gi|159041013|ref|YP_001540265.1| - 1.6e-77 260.7 0.0 1.7e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 gi|159041014|ref|YP_001540266.1| - 2.2e-30 105.9 0.6 4.9e-30 104.8 0.4 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041014|ref|YP_001540266.1| - 3.9e-06 26.8 0.0 8.3e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Sacchrp_dh_NADP PF03435.18 gi|159041014|ref|YP_001540266.1| - 0.00077 19.7 0.1 0.0022 18.2 0.1 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|159041014|ref|YP_001540266.1| - 0.002 18.8 0.2 0.0034 18.0 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|159041014|ref|YP_001540266.1| - 0.071 13.5 0.1 0.19 12.2 0.0 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|159041015|ref|YP_001540267.1| - 6.2e-17 61.7 0.1 1.3e-16 60.6 0.1 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|159041015|ref|YP_001540267.1| - 0.018 14.7 0.0 0.059 13.1 0.0 1.9 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus UxuA PF03786.13 gi|159041015|ref|YP_001540267.1| - 0.061 12.1 0.0 0.092 11.6 0.0 1.3 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|159041016|ref|YP_001540268.1| - 4.6e-28 98.1 0.0 8.5e-28 97.2 0.0 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Imm53 PF15580.6 gi|159041016|ref|YP_001540268.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Immunity protein 53 DUF1722 PF08349.11 gi|159041016|ref|YP_001540268.1| - 0.16 12.2 0.0 1.9 8.8 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1722) GFO_IDH_MocA PF01408.22 gi|159041017|ref|YP_001540269.1| - 1.4e-28 100.1 0.5 2.2e-28 99.5 0.5 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041017|ref|YP_001540269.1| - 1.7e-06 28.1 0.0 3e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|159041017|ref|YP_001540269.1| - 1.9e-05 25.3 0.8 4e-05 24.2 0.4 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ox_reductase_C PF08635.10 gi|159041017|ref|YP_001540269.1| - 2.2e-05 24.2 0.5 0.22 11.2 0.0 2.8 1 1 1 2 2 2 2 Putative oxidoreductase C terminal domain 2-Hacid_dh_C PF02826.19 gi|159041017|ref|YP_001540269.1| - 0.04 13.3 0.0 0.081 12.3 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|159041018|ref|YP_001540270.1| - 3.3e-21 75.7 0.1 5.2e-21 75.0 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|159041018|ref|YP_001540270.1| - 0.0036 17.0 0.0 0.01 15.5 0.0 1.7 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus Cellulase PF00150.18 gi|159041018|ref|YP_001540270.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) NAD_kinase PF01513.21 gi|159041019|ref|YP_001540271.1| - 9.4e-32 110.4 0.1 1.2e-31 110.0 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|159041019|ref|YP_001540271.1| - 0.027 14.1 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PIN_6 PF17146.4 gi|159041020|ref|YP_001540272.1| - 6.5e-06 26.6 0.9 2.3e-05 24.8 0.2 2.1 2 1 0 2 2 2 1 PIN domain of ribonuclease STT3 PF02516.14 gi|159041021|ref|YP_001540273.1| - 1.7e-14 53.7 50.9 3.8e-14 52.5 50.9 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit ETF_alpha PF00766.19 gi|159041022|ref|YP_001540274.1| - 2.3e-30 104.4 0.0 4.8e-30 103.4 0.0 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|159041022|ref|YP_001540274.1| - 6.7e-09 35.9 0.0 1.3e-08 35.0 0.0 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain DUF3104 PF11302.8 gi|159041022|ref|YP_001540274.1| - 0.071 12.9 2.7 0.078 12.7 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3104) ETF PF01012.21 gi|159041023|ref|YP_001540275.1| - 2.2e-36 125.5 2.2 2.6e-36 125.2 2.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Peptidase_M32 PF02074.15 gi|159041024|ref|YP_001540276.1| - 1.9e-154 515.1 0.0 2.3e-154 514.8 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase SIR2 PF02146.17 gi|159041025|ref|YP_001540277.1| - 4.2e-50 170.1 0.0 5.1e-50 169.9 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|159041025|ref|YP_001540277.1| - 0.032 14.4 1.2 0.062 13.4 1.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF2039 PF10217.9 gi|159041025|ref|YP_001540277.1| - 0.034 14.5 0.0 0.057 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DZR PF12773.7 gi|159041025|ref|YP_001540277.1| - 0.1 12.6 0.4 0.19 11.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|159041025|ref|YP_001540277.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|159041025|ref|YP_001540277.1| - 0.27 11.2 2.7 1.1 9.2 2.0 2.2 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Lipase_GDSL_2 PF13472.6 gi|159041026|ref|YP_001540278.1| - 2.1e-20 73.9 0.0 2.4e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|159041026|ref|YP_001540278.1| - 7.9e-14 52.1 0.0 9.3e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Glycos_transf_1 PF00534.20 gi|159041027|ref|YP_001540279.1| - 4e-46 156.7 0.0 6.1e-46 156.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159041027|ref|YP_001540279.1| - 1.8e-31 109.4 1.5 1.2e-30 106.8 1.6 2.1 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|159041027|ref|YP_001540279.1| - 8.9e-30 103.9 0.0 1.6e-29 103.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|159041027|ref|YP_001540279.1| - 1.9e-19 70.3 3.1 1.2e-17 64.4 3.1 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|159041027|ref|YP_001540279.1| - 2.5e-17 63.8 0.0 4.3e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|159041027|ref|YP_001540279.1| - 1.3e-09 38.3 0.0 2.2e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|159041027|ref|YP_001540279.1| - 0.0036 15.9 0.1 0.27 9.7 0.0 2.1 2 0 0 2 2 2 2 Glycogen synthase DUF2325 PF10087.9 gi|159041027|ref|YP_001540279.1| - 0.16 12.1 0.1 3.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) Glyco_transf_4 PF13439.6 gi|159041028|ref|YP_001540280.1| - 1.4e-05 25.1 0.0 6.8e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|159041028|ref|YP_001540280.1| - 0.00013 22.5 0.0 0.00018 22.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|159041028|ref|YP_001540280.1| - 0.0069 16.4 0.0 0.0095 16.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like HSP20 PF00011.21 gi|159041029|ref|YP_001540281.1| - 9.4e-13 48.2 0.0 1.4e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|159041029|ref|YP_001540281.1| - 2.4e-08 33.4 0.1 6e-08 32.1 0.1 1.7 2 0 0 2 2 2 1 HSP20-like domain found in ArsA CS PF04969.16 gi|159041029|ref|YP_001540281.1| - 0.004 18.1 0.0 0.0068 17.4 0.0 1.4 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|159041029|ref|YP_001540281.1| - 0.084 13.3 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 PIH1 CS-like domain PhoU PF01895.19 gi|159041030|ref|YP_001540282.1| - 4e-16 59.2 8.1 3.9e-14 52.9 1.8 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|159041030|ref|YP_001540282.1| - 5.9e-14 51.6 0.2 2.2e-13 49.8 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin TOBE PF03459.17 gi|159041030|ref|YP_001540282.1| - 0.00033 20.9 0.0 0.00078 19.7 0.0 1.6 1 0 0 1 1 1 1 TOBE domain TRF PF08558.10 gi|159041030|ref|YP_001540282.1| - 0.06 12.9 0.5 0.31 10.6 0.1 1.9 1 1 1 2 2 2 0 Telomere repeat binding factor (TRF) TOBE_3 PF12857.7 gi|159041030|ref|YP_001540282.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 TOBE-like domain Methyltransf_25 PF13649.6 gi|159041031|ref|YP_001540283.1| - 2e-05 25.2 0.0 3.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|159041031|ref|YP_001540283.1| - 2.5e-05 23.9 0.0 3.3e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|159041031|ref|YP_001540283.1| - 0.0034 17.2 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|159041031|ref|YP_001540283.1| - 0.0072 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|159041031|ref|YP_001540283.1| - 0.0085 16.0 0.0 0.017 15.0 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|159041031|ref|YP_001540283.1| - 0.08 13.6 0.0 0.13 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RNA_pol_Rpb2_6 PF00562.28 gi|159041032|ref|YP_001540284.1| - 1e-129 433.0 0.0 1.4e-129 432.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|159041032|ref|YP_001540284.1| - 2e-48 164.6 0.0 2.9e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|159041032|ref|YP_001540284.1| - 1.6e-29 102.1 0.0 3.4e-29 101.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|159041032|ref|YP_001540284.1| - 8.5e-29 99.5 0.1 1.7e-28 98.5 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|159041032|ref|YP_001540284.1| - 2.3e-23 82.8 0.0 5.6e-23 81.6 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.13 gi|159041032|ref|YP_001540284.1| - 9e-21 73.9 2.0 2.9e-20 72.3 2.0 2.0 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|159041032|ref|YP_001540284.1| - 1.5e-10 41.5 1.4 6.7e-10 39.4 1.4 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DUF2070 PF09843.9 gi|159041033|ref|YP_001540285.1| - 1e-113 380.6 17.4 1.2e-113 380.4 17.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) AdoMet_dc PF02675.15 gi|159041034|ref|YP_001540286.1| - 5.1e-33 113.5 0.0 5.8e-33 113.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Phos_pyr_kin PF08543.12 gi|159041035|ref|YP_001540287.1| - 2.9e-95 318.3 0.1 4.2e-95 317.8 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|159041035|ref|YP_001540287.1| - 4.9e-15 55.6 0.0 7.2e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|159041035|ref|YP_001540287.1| - 0.019 14.5 0.5 0.032 13.7 0.5 1.4 1 1 0 1 1 1 0 Carbohydrate kinase MarR PF01047.22 gi|159041036|ref|YP_001540288.1| - 1.3e-11 44.3 0.4 2.7e-11 43.2 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|159041036|ref|YP_001540288.1| - 4.8e-10 39.1 0.2 8.1e-10 38.4 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|159041036|ref|YP_001540288.1| - 8.9e-09 35.3 0.1 1.4e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|159041036|ref|YP_001540288.1| - 6.4e-08 32.0 0.4 1.1e-07 31.3 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|159041036|ref|YP_001540288.1| - 5.7e-07 29.4 0.5 1.1e-06 28.4 0.4 1.6 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|159041036|ref|YP_001540288.1| - 9.8e-06 25.4 0.3 1.5e-05 24.8 0.1 1.5 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 gi|159041036|ref|YP_001540288.1| - 0.00018 21.3 0.1 0.00031 20.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|159041036|ref|YP_001540288.1| - 0.00021 21.4 0.1 0.00034 20.7 0.1 1.5 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HxlR PF01638.17 gi|159041036|ref|YP_001540288.1| - 0.0003 20.6 0.2 0.00037 20.3 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_DeoR PF08220.12 gi|159041036|ref|YP_001540288.1| - 0.00038 20.2 0.2 0.0006 19.5 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|159041036|ref|YP_001540288.1| - 0.00066 19.4 0.3 0.0024 17.6 0.0 1.9 1 1 1 2 2 2 1 Homeodomain-like domain HTH_34 PF13601.6 gi|159041036|ref|YP_001540288.1| - 0.00069 19.8 0.4 0.00096 19.3 0.4 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|159041036|ref|YP_001540288.1| - 0.00088 19.2 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Dimerisation2 PF16864.5 gi|159041036|ref|YP_001540288.1| - 0.00093 19.1 0.0 0.0014 18.6 0.0 1.2 1 0 0 1 1 1 1 Dimerisation domain HTH_45 PF14947.6 gi|159041036|ref|YP_001540288.1| - 0.0018 18.2 0.5 0.0028 17.6 0.5 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix Phage_rep_org_N PF09681.10 gi|159041036|ref|YP_001540288.1| - 0.0021 18.0 0.1 0.0022 17.9 0.1 1.1 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_28 PF13518.6 gi|159041036|ref|YP_001540288.1| - 0.0028 17.8 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|159041036|ref|YP_001540288.1| - 0.0034 17.1 0.3 0.03 14.1 0.2 2.2 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain DUF2513 PF10711.9 gi|159041036|ref|YP_001540288.1| - 0.0046 17.2 1.2 0.021 15.1 0.4 2.2 1 1 1 2 2 2 1 Hypothetical protein (DUF2513) DUF4364 PF14277.6 gi|159041036|ref|YP_001540288.1| - 0.0067 16.2 0.1 0.0076 16.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|159041036|ref|YP_001540288.1| - 0.0087 16.5 0.1 0.012 16.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain SAM_DrpA PF18255.1 gi|159041036|ref|YP_001540288.1| - 0.0087 16.3 1.2 0.013 15.7 0.2 1.7 2 0 0 2 2 1 1 DNA processing protein A sterile alpha motif domain HTH_AsnC-type PF13404.6 gi|159041036|ref|YP_001540288.1| - 0.011 15.5 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Replic_Relax PF13814.6 gi|159041036|ref|YP_001540288.1| - 0.012 15.7 0.4 0.014 15.5 0.4 1.2 1 0 0 1 1 1 0 Replication-relaxation GntR PF00392.21 gi|159041036|ref|YP_001540288.1| - 0.013 15.1 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|159041036|ref|YP_001540288.1| - 0.018 15.4 0.2 0.024 15.0 0.2 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|159041036|ref|YP_001540288.1| - 0.025 14.6 0.3 0.036 14.1 0.3 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|159041036|ref|YP_001540288.1| - 0.025 14.9 0.1 0.037 14.4 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor DDE_Tnp_2 PF04693.12 gi|159041036|ref|YP_001540288.1| - 0.033 13.4 0.1 0.037 13.2 0.1 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DUF2250 PF10007.9 gi|159041036|ref|YP_001540288.1| - 0.034 14.3 2.9 0.081 13.0 0.6 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) NUMOD1 PF07453.13 gi|159041036|ref|YP_001540288.1| - 0.035 14.4 1.2 0.058 13.7 0.1 1.9 2 0 0 2 2 2 0 NUMOD1 domain FaeA PF04703.12 gi|159041036|ref|YP_001540288.1| - 0.036 14.4 0.2 0.058 13.8 0.2 1.3 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.17 gi|159041036|ref|YP_001540288.1| - 0.037 13.9 0.2 0.059 13.2 0.2 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.6 gi|159041036|ref|YP_001540288.1| - 0.041 13.9 0.0 0.068 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix PheRS_DBD1 PF18552.1 gi|159041036|ref|YP_001540288.1| - 0.046 13.5 0.7 0.11 12.3 0.7 1.6 1 1 0 1 1 1 0 PheRS DNA binding domain 1 HTH_9 PF08221.11 gi|159041036|ref|YP_001540288.1| - 0.062 13.4 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF977 PF06163.11 gi|159041036|ref|YP_001540288.1| - 0.065 13.2 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) E2F_TDP PF02319.20 gi|159041036|ref|YP_001540288.1| - 0.084 12.9 0.4 0.19 11.8 0.2 1.6 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Beta-Casp PF10996.8 gi|159041038|ref|YP_001540290.1| - 2.1e-20 73.1 0.0 4.7e-20 71.9 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|159041038|ref|YP_001540290.1| - 1.1e-19 70.2 0.3 2.4e-19 69.1 0.3 1.6 1 0 0 1 1 1 1 KH domain RMMBL PF07521.12 gi|159041038|ref|YP_001540290.1| - 1.4e-13 50.6 0.1 5.2e-13 48.7 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|159041038|ref|YP_001540290.1| - 9.4e-13 48.0 0.1 3.4e-12 46.2 0.1 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|159041038|ref|YP_001540290.1| - 2.1e-12 47.5 0.7 7.9e-12 45.6 0.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|159041038|ref|YP_001540290.1| - 7.8e-09 35.3 0.0 2.7e-08 33.6 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|159041038|ref|YP_001540290.1| - 0.0011 18.8 0.0 0.004 17.1 0.0 1.9 1 0 0 1 1 1 1 Beta-lactamase superfamily domain eIF-5a PF01287.20 gi|159041038|ref|YP_001540290.1| - 0.039 14.1 0.9 0.16 12.1 0.1 2.4 2 0 0 2 2 2 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold YcgL PF05166.13 gi|159041038|ref|YP_001540290.1| - 0.052 13.9 0.0 0.48 10.8 0.0 2.4 2 0 0 2 2 2 0 YcgL domain ABC_tran PF00005.27 gi|159041039|ref|YP_001540291.1| - 2.2e-30 106.0 0.0 2.9e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159041039|ref|YP_001540291.1| - 2.8e-20 72.6 0.4 5e-20 71.8 0.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|159041039|ref|YP_001540291.1| - 0.0007 19.9 0.2 0.0035 17.6 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041039|ref|YP_001540291.1| - 0.0019 18.6 0.0 0.0028 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|159041039|ref|YP_001540291.1| - 0.0023 17.6 0.1 0.0043 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|159041039|ref|YP_001540291.1| - 0.0076 16.4 0.3 0.018 15.1 0.3 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_21 PF13304.6 gi|159041039|ref|YP_001540291.1| - 0.0079 16.0 0.6 0.44 10.3 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 gi|159041039|ref|YP_001540291.1| - 0.011 15.6 0.4 0.039 13.9 0.3 1.9 1 1 1 2 2 2 0 NACHT domain SMC_N PF02463.19 gi|159041039|ref|YP_001540291.1| - 0.016 14.7 0.3 1.8 7.9 0.0 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.14 gi|159041039|ref|YP_001540291.1| - 0.023 14.6 0.1 0.04 13.8 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.6 gi|159041039|ref|YP_001540291.1| - 0.024 14.3 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|159041039|ref|YP_001540291.1| - 0.078 12.9 0.1 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|159041039|ref|YP_001540291.1| - 0.095 13.3 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|159041039|ref|YP_001540291.1| - 0.096 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|159041039|ref|YP_001540291.1| - 0.1 12.3 0.2 0.35 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|159041039|ref|YP_001540291.1| - 0.13 11.5 0.1 0.23 10.8 0.1 1.3 1 0 0 1 1 1 0 KaiC APS_kinase PF01583.20 gi|159041039|ref|YP_001540291.1| - 0.17 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Mg_chelatase PF01078.21 gi|159041039|ref|YP_001540291.1| - 0.19 11.1 0.0 0.39 10.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|159041039|ref|YP_001540291.1| - 0.19 12.2 0.0 0.33 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|159041039|ref|YP_001540291.1| - 0.2 11.1 0.1 0.36 10.2 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_13 PF13166.6 gi|159041039|ref|YP_001540291.1| - 0.91 8.1 1.9 19 3.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain GTP_EFTU_D4 PF14578.6 gi|159041040|ref|YP_001540292.1| - 3.5e-38 129.4 6.3 1.3e-37 127.5 6.3 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|159041040|ref|YP_001540292.1| - 8.3e-29 100.5 0.0 8.5e-28 97.2 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|159041040|ref|YP_001540292.1| - 1.8e-18 66.6 0.3 4.7e-18 65.2 0.3 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|159041040|ref|YP_001540292.1| - 5.7e-11 42.7 0.3 5.7e-11 42.7 0.3 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|159041040|ref|YP_001540292.1| - 0.00011 22.3 0.0 0.00034 20.7 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|159041040|ref|YP_001540292.1| - 0.0022 18.2 0.0 0.005 17.0 0.0 1.6 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|159041040|ref|YP_001540292.1| - 0.018 14.8 0.0 0.13 12.0 0.0 2.4 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|159041040|ref|YP_001540292.1| - 0.12 12.0 0.0 1.8 8.1 0.0 2.2 1 1 0 1 1 1 0 Ras family Proteasome PF00227.26 gi|159041041|ref|YP_001540293.1| - 6.8e-50 169.2 0.2 7.6e-50 169.0 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit FKBP26_C PF18046.1 gi|159041042|ref|YP_001540294.1| - 1.1e-22 79.8 1.7 1.3e-21 76.4 1.5 2.2 2 0 0 2 2 2 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|159041042|ref|YP_001540294.1| - 1.5e-06 28.4 0.0 3.1e-06 27.4 0.0 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Usp PF00582.26 gi|159041042|ref|YP_001540294.1| - 0.18 12.3 4.5 8 7.0 1.4 2.6 3 0 0 3 3 3 0 Universal stress protein family DNA_pol3_a_NII PF11490.8 gi|159041042|ref|YP_001540294.1| - 4.7 7.1 9.8 0.74 9.7 4.7 2.2 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II Ribosomal_S17e PF00833.18 gi|159041043|ref|YP_001540295.1| - 4.5e-16 58.9 0.2 5.4e-16 58.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal S17 HemN_C PF06969.16 gi|159041044|ref|YP_001540296.1| - 0.012 15.7 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain RNA_pol_Rpb6 PF01192.22 gi|159041045|ref|YP_001540297.1| - 1.2e-09 37.9 0.0 3e-09 36.6 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb6 Glyco_hydro_42 PF02449.15 gi|159041046|ref|YP_001540298.1| - 3.3e-11 43.2 1.4 5.2e-11 42.5 1.4 1.2 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_14 PF01373.17 gi|159041046|ref|YP_001540298.1| - 3.9e-05 22.8 0.0 0.0019 17.2 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 14 Glyco_hydro_35 PF01301.19 gi|159041046|ref|YP_001540298.1| - 0.0074 15.9 0.1 0.015 14.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 RIFIN PF02009.16 gi|159041047|ref|YP_001540299.1| - 0.024 14.6 10.6 0.032 14.1 10.6 1.1 1 0 0 1 1 1 0 Rifin Collectrin PF16959.5 gi|159041047|ref|YP_001540299.1| - 5.3 6.8 10.6 9.3 6.0 10.6 1.4 1 0 0 1 1 1 0 Renal amino acid transporter GFO_IDH_MocA PF01408.22 gi|159041048|ref|YP_001540300.1| - 3.4e-17 63.4 0.0 5.3e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041048|ref|YP_001540300.1| - 0.00036 20.5 0.1 0.00063 19.7 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain G6PD_N PF00479.22 gi|159041048|ref|YP_001540300.1| - 0.00071 20.2 0.0 0.0011 19.6 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF1086 PF06461.11 gi|159041048|ref|YP_001540300.1| - 0.15 12.0 0.1 3.2 7.6 0.0 2.7 2 1 1 3 3 3 0 Domain of Unknown Function (DUF1086) PTH2 PF01981.16 gi|159041049|ref|YP_001540301.1| - 2.6e-40 137.4 0.0 2.8e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 MIase PF02426.16 gi|159041049|ref|YP_001540301.1| - 0.088 13.0 0.1 0.11 12.6 0.1 1.2 1 0 0 1 1 1 0 Muconolactone delta-isomerase VKOR PF07884.14 gi|159041050|ref|YP_001540302.1| - 1.3e-24 86.8 10.9 1.6e-24 86.5 10.9 1.1 1 0 0 1 1 1 1 Vitamin K epoxide reductase family CM2 PF03021.14 gi|159041050|ref|YP_001540302.1| - 0.019 14.8 0.1 0.092 12.6 0.1 2.1 1 1 0 1 1 1 0 Influenza C virus M2 protein Glyco_hydro_16 PF00722.21 gi|159041051|ref|YP_001540303.1| - 0.069 12.6 0.0 0.84 9.1 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 16 MFS_1 PF07690.16 gi|159041052|ref|YP_001540304.1| - 3.8e-23 82.0 43.9 1.9e-15 56.7 32.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159041052|ref|YP_001540304.1| - 7.6e-07 28.3 26.9 4.5e-06 25.8 19.3 3.0 1 1 1 2 2 2 2 MFS_1 like family Potex_coat PF06184.11 gi|159041052|ref|YP_001540304.1| - 0.0096 15.5 0.2 0.033 13.8 0.0 1.8 2 0 0 2 2 2 1 Potexvirus coat protein CMD PF02627.20 gi|159041053|ref|YP_001540305.1| - 8.8e-24 83.4 0.0 1.7e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cupin_2 PF07883.11 gi|159041053|ref|YP_001540305.1| - 2.8e-09 36.6 1.1 4.1e-09 36.0 1.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|159041053|ref|YP_001540305.1| - 6e-06 26.2 0.2 1.1e-05 25.3 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|159041053|ref|YP_001540305.1| - 4.4e-05 23.1 0.1 6.7e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Cupin Auxin_BP PF02041.16 gi|159041053|ref|YP_001540305.1| - 0.092 12.4 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Auxin binding protein Cupin_7 PF12973.7 gi|159041053|ref|YP_001540305.1| - 0.11 12.5 0.1 0.23 11.4 0.1 1.6 1 0 0 1 1 1 0 ChrR Cupin-like domain Aldo_ket_red PF00248.21 gi|159041054|ref|YP_001540306.1| - 5.4e-78 262.1 0.0 6.1e-78 262.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AIM24 PF01987.17 gi|159041055|ref|YP_001540307.1| - 1.4e-47 162.1 2.8 1.6e-47 162.0 2.8 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Translin PF01997.16 gi|159041056|ref|YP_001540308.1| - 2.4e-12 47.3 5.0 8e-11 42.3 5.0 2.0 1 1 0 1 1 1 1 Translin family RPN7 PF10602.9 gi|159041056|ref|YP_001540308.1| - 0.024 14.3 0.7 0.036 13.8 0.6 1.5 1 1 0 1 1 1 0 26S proteasome subunit RPN7 TatD_DNase PF01026.21 gi|159041057|ref|YP_001540309.1| - 3.4e-22 79.0 0.0 4.3e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase zf-ZPR1 PF03367.13 gi|159041058|ref|YP_001540310.1| - 7.3e-29 100.7 0.0 8.6e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|159041058|ref|YP_001540310.1| - 0.17 12.3 0.1 0.28 11.6 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|159041058|ref|YP_001540310.1| - 0.18 11.3 1.0 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF983 PF06170.12 gi|159041058|ref|YP_001540310.1| - 0.23 11.9 0.4 19 5.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF983) ETF PF01012.21 gi|159041059|ref|YP_001540311.1| - 6.7e-44 150.0 0.0 9.5e-44 149.5 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|159041059|ref|YP_001540311.1| - 3.4e-31 107.1 0.7 7e-31 106.1 0.7 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.22 gi|159041059|ref|YP_001540311.1| - 0.014 15.1 2.0 1.9 8.2 1.3 3.0 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ETF PF01012.21 gi|159041060|ref|YP_001540312.1| - 2.2e-35 122.2 0.0 3e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_QO PF05187.13 gi|159041061|ref|YP_001540313.1| - 2.9e-08 33.8 2.5 3.8e-08 33.4 2.5 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_7 PF12838.7 gi|159041061|ref|YP_001540313.1| - 3.6e-08 33.8 6.6 0.0004 20.9 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159041061|ref|YP_001540313.1| - 1e-07 31.6 12.2 0.0014 18.6 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159041061|ref|YP_001540313.1| - 4.6e-07 29.9 9.1 6.3e-07 29.5 9.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|159041061|ref|YP_001540313.1| - 6.1e-07 29.5 5.9 8.1e-07 29.1 5.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159041061|ref|YP_001540313.1| - 4.2e-06 26.4 14.9 6.2e-06 25.8 1.4 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159041061|ref|YP_001540313.1| - 7.4e-06 26.0 25.6 0.00087 19.4 16.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159041061|ref|YP_001540313.1| - 0.0005 20.0 15.1 0.0081 16.2 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041061|ref|YP_001540313.1| - 0.00073 19.6 12.0 0.0016 18.5 12.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159041061|ref|YP_001540313.1| - 0.0012 19.8 0.9 0.0012 19.8 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|159041061|ref|YP_001540313.1| - 0.0028 18.0 0.9 0.0028 18.0 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|159041061|ref|YP_001540313.1| - 0.024 15.1 9.0 0.091 13.2 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|159041061|ref|YP_001540313.1| - 0.19 12.8 4.7 0.19 12.8 4.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|159041061|ref|YP_001540313.1| - 1.3 8.9 8.6 0.57 10.0 2.4 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.6 gi|159041061|ref|YP_001540313.1| - 2.7 8.6 16.9 0.17 12.4 3.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159041061|ref|YP_001540313.1| - 6.1 7.5 14.5 1.2 9.7 2.5 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DAO PF01266.24 gi|159041062|ref|YP_001540314.1| - 5.9e-14 52.4 2.4 5.3e-07 29.5 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|159041062|ref|YP_001540314.1| - 6.4e-10 38.7 0.9 3.7e-07 29.6 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|159041062|ref|YP_001540314.1| - 8.8e-10 37.8 0.2 2.8e-09 36.2 0.2 1.7 1 1 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|159041062|ref|YP_001540314.1| - 7.8e-09 35.2 0.6 6.2e-08 32.2 0.6 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|159041062|ref|YP_001540314.1| - 9.9e-09 34.8 0.7 3.9e-08 32.8 0.6 1.9 1 1 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|159041062|ref|YP_001540314.1| - 1.1e-07 32.0 0.2 2.9e-07 30.6 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|159041062|ref|YP_001540314.1| - 8.6e-07 28.5 0.1 1.3e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|159041062|ref|YP_001540314.1| - 9e-07 28.6 0.2 1.3e-06 28.1 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|159041062|ref|YP_001540314.1| - 4.9e-05 23.4 0.2 0.00014 21.8 0.2 1.8 1 1 0 1 1 1 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|159041062|ref|YP_001540314.1| - 0.00017 20.8 0.7 0.0065 15.6 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|159041062|ref|YP_001540314.1| - 0.00029 20.0 0.4 0.00065 18.9 0.4 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|159041062|ref|YP_001540314.1| - 0.0008 18.4 0.3 0.18 10.6 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|159041062|ref|YP_001540314.1| - 0.00084 18.7 0.8 0.0014 17.9 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|159041062|ref|YP_001540314.1| - 0.0017 17.7 3.0 0.0023 17.3 0.1 2.5 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|159041062|ref|YP_001540314.1| - 0.0021 18.6 0.7 0.046 14.3 0.4 2.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.18 gi|159041062|ref|YP_001540314.1| - 0.0052 15.4 0.0 1 7.8 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor GMC_oxred_N PF00732.19 gi|159041062|ref|YP_001540314.1| - 0.029 13.8 0.0 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase TENA_THI-4 PF03070.16 gi|159041063|ref|YP_001540315.1| - 1.4e-41 142.6 3.7 1.6e-41 142.4 3.7 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DEK_C PF08766.11 gi|159041063|ref|YP_001540315.1| - 0.15 12.0 0.1 0.4 10.7 0.1 1.7 2 0 0 2 2 2 0 DEK C terminal domain TM_helix PF05552.12 gi|159041064|ref|YP_001540316.1| - 0.023 14.7 0.8 0.023 14.7 0.8 4.5 5 0 0 5 5 5 0 Conserved TM helix HTH_3 PF01381.22 gi|159041065|ref|YP_001540317.1| - 3.9e-05 23.6 0.1 0.00012 22.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.12 gi|159041065|ref|YP_001540317.1| - 5.8e-05 23.0 0.1 0.00036 20.4 0.0 2.3 2 1 1 3 3 3 1 HTH domain Sigma70_r4 PF04545.16 gi|159041065|ref|YP_001540317.1| - 0.00042 19.8 0.7 0.2 11.2 0.0 2.7 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_23 PF13384.6 gi|159041065|ref|YP_001540317.1| - 0.00069 19.3 0.0 0.0028 17.4 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.15 gi|159041065|ref|YP_001540317.1| - 0.0011 19.0 0.1 0.0049 16.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_20 PF12840.7 gi|159041065|ref|YP_001540317.1| - 0.0013 18.7 0.3 0.006 16.6 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|159041065|ref|YP_001540317.1| - 0.0026 17.3 0.0 0.014 15.0 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|159041065|ref|YP_001540317.1| - 0.0034 17.0 0.4 0.013 15.2 0.0 2.1 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|159041065|ref|YP_001540317.1| - 0.0043 16.8 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|159041065|ref|YP_001540317.1| - 0.0043 17.5 0.4 0.012 16.0 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|159041065|ref|YP_001540317.1| - 0.0062 16.5 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_CodY PF08222.11 gi|159041065|ref|YP_001540317.1| - 0.015 14.9 0.8 0.13 11.8 0.0 2.5 3 0 0 3 3 3 0 CodY helix-turn-helix domain HTH_IclR PF09339.10 gi|159041065|ref|YP_001540317.1| - 0.03 14.1 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain GerE PF00196.19 gi|159041065|ref|YP_001540317.1| - 0.034 13.7 0.1 0.068 12.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_31 PF13560.6 gi|159041065|ref|YP_001540317.1| - 0.047 14.0 1.1 0.069 13.5 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain FliT PF05400.13 gi|159041065|ref|YP_001540317.1| - 0.075 13.9 1.0 0.18 12.6 0.3 1.9 1 1 1 2 2 2 0 Flagellar protein FliT HTH_AsnC-type PF13404.6 gi|159041065|ref|YP_001540317.1| - 0.084 12.7 0.1 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_19 PF12844.7 gi|159041065|ref|YP_001540317.1| - 0.091 12.8 0.1 0.32 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|159041065|ref|YP_001540317.1| - 0.11 12.6 0.4 0.36 10.9 0.0 2.1 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus ATPase PF06745.13 gi|159041066|ref|YP_001540318.1| - 1.8e-81 272.9 0.0 2.5e-81 272.4 0.0 1.2 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|159041066|ref|YP_001540318.1| - 6.8e-05 21.7 0.0 8.6e-05 21.3 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|159041066|ref|YP_001540318.1| - 0.00095 18.8 0.2 0.0053 16.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|159041066|ref|YP_001540318.1| - 0.00099 18.4 0.3 0.0021 17.4 0.3 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|159041066|ref|YP_001540318.1| - 0.023 14.7 0.0 0.069 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|159041066|ref|YP_001540318.1| - 0.037 14.4 0.2 0.12 12.8 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|159041066|ref|YP_001540318.1| - 0.058 12.5 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad51 PF08423.11 gi|159041066|ref|YP_001540318.1| - 0.089 12.0 0.1 0.56 9.4 0.0 1.9 2 0 0 2 2 2 0 Rad51 AAA_24 PF13479.6 gi|159041066|ref|YP_001540318.1| - 0.11 12.2 0.0 0.37 10.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|159041066|ref|YP_001540318.1| - 0.17 12.1 0.1 0.41 10.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain DrsE_2 PF13686.6 gi|159041067|ref|YP_001540319.1| - 1.3e-16 60.8 0.2 1.8e-07 31.2 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|159041067|ref|YP_001540319.1| - 6.1e-08 33.0 0.0 8.1e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|159041068|ref|YP_001540320.1| - 6.5e-19 67.5 0.0 7.4e-19 67.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.14 gi|159041069|ref|YP_001540321.1| - 5.9e-17 61.8 0.0 4e-16 59.1 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|159041069|ref|YP_001540321.1| - 8.5e-06 25.9 0.0 2.5e-05 24.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|159041069|ref|YP_001540321.1| - 7.7e-05 23.2 0.0 0.44 11.1 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|159041069|ref|YP_001540321.1| - 0.0017 17.1 0.0 0.0076 15.0 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|159041069|ref|YP_001540321.1| - 0.0018 18.3 0.0 0.38 10.7 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|159041069|ref|YP_001540321.1| - 0.0052 15.9 0.0 0.0078 15.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|159041069|ref|YP_001540321.1| - 0.0099 15.0 0.0 0.03 13.4 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|159041069|ref|YP_001540321.1| - 0.011 15.0 0.0 0.029 13.6 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.18 gi|159041069|ref|YP_001540321.1| - 0.02 15.1 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain DAO PF01266.24 gi|159041069|ref|YP_001540321.1| - 0.022 14.3 0.0 0.24 10.9 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF1188 PF06690.11 gi|159041069|ref|YP_001540321.1| - 0.074 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) NAD_binding_7 PF13241.6 gi|159041069|ref|YP_001540321.1| - 0.12 12.9 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|159041069|ref|YP_001540321.1| - 0.13 11.5 0.0 0.87 8.8 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF1641 PF07849.11 gi|159041070|ref|YP_001540322.1| - 0.0012 18.6 1.8 0.002 18.0 0.0 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1641) AsiA PF09010.10 gi|159041070|ref|YP_001540322.1| - 0.043 13.9 0.8 0.23 11.6 0.1 2.5 2 1 1 3 3 3 0 Anti-Sigma Factor A Pribosyltran_N PF13793.6 gi|159041071|ref|YP_001540323.1| - 8.7e-25 86.9 0.0 4.1e-21 75.1 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|159041071|ref|YP_001540323.1| - 6.6e-17 61.5 0.1 1.4e-16 60.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|159041071|ref|YP_001540323.1| - 2.8e-09 37.3 0.9 4.3e-09 36.7 0.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|159041071|ref|YP_001540323.1| - 0.00037 20.0 0.0 0.00059 19.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|159041071|ref|YP_001540323.1| - 0.024 14.1 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Tsp45I PF06300.12 gi|159041071|ref|YP_001540323.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme ACT PF01842.25 gi|159041072|ref|YP_001540324.1| - 1.8e-07 30.8 0.0 8.8e-07 28.6 0.0 2.1 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|159041072|ref|YP_001540324.1| - 0.0071 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 ACT domain YhfC PF10086.9 gi|159041073|ref|YP_001540325.1| - 0.0004 19.8 8.7 0.0079 15.6 8.7 2.3 1 1 0 1 1 1 1 YhfC intramembrane metalloprotease DUF357 PF04010.13 gi|159041073|ref|YP_001540325.1| - 0.0032 17.5 0.3 0.0076 16.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF357) DUF4131 PF13567.6 gi|159041073|ref|YP_001540325.1| - 0.73 9.5 5.9 0.18 11.4 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) YbjQ_1 PF01906.17 gi|159041074|ref|YP_001540326.1| - 9.5e-35 119.4 0.9 1.1e-34 119.2 0.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|159041074|ref|YP_001540326.1| - 0.0049 17.3 0.1 0.11 12.9 0.0 2.1 2 0 0 2 2 2 1 Selenium binding protein GNAT_acetyltr_2 PF13718.6 gi|159041074|ref|YP_001540326.1| - 0.035 13.5 0.0 0.041 13.3 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Fe-ADH PF00465.19 gi|159041074|ref|YP_001540326.1| - 0.063 12.1 0.0 0.074 11.9 0.0 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase DUF4156 PF13698.6 gi|159041074|ref|YP_001540326.1| - 0.11 12.8 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4156) CdiA_C PF18451.1 gi|159041074|ref|YP_001540326.1| - 0.17 12.1 0.0 0.24 11.7 0.0 1.1 1 0 0 1 1 1 0 Contact-dependent growth inhibition CdiA C-terminal domain DUF2204 PF09970.9 gi|159041075|ref|YP_001540327.1| - 2.6e-64 216.2 0.3 3e-64 216.0 0.3 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) tRNA-Thr_ED PF08915.11 gi|159041076|ref|YP_001540328.1| - 7.5e-47 158.8 0.0 1.2e-46 158.2 0.0 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|159041076|ref|YP_001540328.1| - 9.1e-22 77.0 0.6 1.7e-21 76.1 0.2 1.7 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|159041076|ref|YP_001540328.1| - 5.7e-17 62.3 0.2 1e-16 61.5 0.2 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) INT_SG_DDX_CT_C PF15300.6 gi|159041076|ref|YP_001540328.1| - 0.056 13.3 0.1 0.18 11.6 0.1 1.9 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus Aldo_ket_red PF00248.21 gi|159041077|ref|YP_001540329.1| - 2.8e-31 108.8 0.0 3.2e-31 108.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Arm-DNA-bind_3 PF13356.6 gi|159041077|ref|YP_001540329.1| - 0.18 12.2 0.0 0.51 10.7 0.0 1.8 1 0 0 1 1 1 0 Arm DNA-binding domain GBR_NSP5 PF17580.2 gi|159041078|ref|YP_001540330.1| - 0.073 12.9 0.0 0.088 12.6 0.0 1.1 1 0 0 1 1 1 0 Group B Rotavirus Non-structural protein 5 VKOR PF07884.14 gi|159041079|ref|YP_001540331.1| - 0.00017 21.8 19.3 0.00081 19.6 19.3 1.8 1 1 0 1 1 1 1 Vitamin K epoxide reductase family DUF3159 PF11361.8 gi|159041079|ref|YP_001540331.1| - 0.039 13.7 8.6 0.053 13.3 8.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) DUF2628 PF10947.8 gi|159041079|ref|YP_001540331.1| - 3.5 8.0 8.3 4.9 7.6 8.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) NCE101 PF11654.8 gi|159041079|ref|YP_001540331.1| - 4 7.2 6.3 2 8.2 0.3 2.6 3 0 0 3 3 3 0 Non-classical export protein 1 DAO PF01266.24 gi|159041080|ref|YP_001540332.1| - 1.3e-15 57.9 1.4 3.6e-14 53.1 1.4 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|159041080|ref|YP_001540332.1| - 1.5e-07 30.9 0.0 3.6e-07 29.7 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159041080|ref|YP_001540332.1| - 0.00079 19.9 0.4 0.0021 18.6 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|159041080|ref|YP_001540332.1| - 0.0018 18.5 0.7 0.0029 17.8 0.1 1.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|159041080|ref|YP_001540332.1| - 0.0022 17.2 0.1 0.0034 16.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 gi|159041080|ref|YP_001540332.1| - 0.031 14.7 0.0 0.054 13.9 0.0 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|159041080|ref|YP_001540332.1| - 0.035 13.4 0.1 0.054 12.8 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|159041080|ref|YP_001540332.1| - 0.042 13.1 0.2 0.14 11.4 0.1 1.8 2 0 0 2 2 2 0 FAD binding domain GIDA PF01134.22 gi|159041080|ref|YP_001540332.1| - 0.064 12.3 0.0 0.65 9.0 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A HI0933_like PF03486.14 gi|159041080|ref|YP_001540332.1| - 0.083 11.6 0.2 0.17 10.6 0.1 1.5 2 0 0 2 2 2 0 HI0933-like protein RIO1 PF01163.22 gi|159041081|ref|YP_001540333.1| - 3.3e-54 183.4 0.0 4.6e-54 182.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|159041081|ref|YP_001540333.1| - 0.00053 20.0 0.1 0.22 11.4 0.1 2.2 2 0 0 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|159041081|ref|YP_001540333.1| - 0.0097 15.3 0.1 0.027 13.8 0.0 1.7 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|159041081|ref|YP_001540333.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein kinase domain PEP-utilizers_C PF02896.18 gi|159041082|ref|YP_001540334.1| - 1.5e-77 260.6 0.1 2.3e-77 260.0 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|159041082|ref|YP_001540334.1| - 4.2e-48 164.3 0.0 4.9e-37 127.9 0.0 3.2 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|159041082|ref|YP_001540334.1| - 1.5e-25 88.7 0.6 6.1e-25 86.7 0.5 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain NAD1 PF18778.1 gi|159041082|ref|YP_001540334.1| - 0.12 12.4 0.1 0.78 9.8 0.0 2.1 2 0 0 2 2 2 0 Novel AID APOBEC clade 1 DUF2786 PF10979.8 gi|159041082|ref|YP_001540334.1| - 0.5 10.3 2.0 9.8 6.2 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) PRD PF00874.20 gi|159041082|ref|YP_001540334.1| - 1.8 8.9 4.0 73 3.8 0.1 3.9 4 0 0 4 4 4 0 PRD domain polyprenyl_synt PF00348.17 gi|159041083|ref|YP_001540335.1| - 3.6e-43 147.5 0.1 4.6e-43 147.1 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase CN_hydrolase PF00795.22 gi|159041084|ref|YP_001540336.1| - 6e-53 179.8 0.0 6.7e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ribosomal_S13 PF00416.22 gi|159041085|ref|YP_001540337.1| - 5.2e-39 133.6 0.2 6.1e-39 133.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.6 gi|159041085|ref|YP_001540337.1| - 0.006 17.2 0.1 0.012 16.2 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain Peptidase_S24 PF00717.23 gi|159041086|ref|YP_001540338.1| - 0.00014 21.8 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like Lipase_GDSL_lke PF16255.5 gi|159041086|ref|YP_001540338.1| - 0.12 11.7 0.1 0.18 11.2 0.1 1.1 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase MFS_1 PF07690.16 gi|159041087|ref|YP_001540339.1| - 2.4e-33 115.5 47.9 3.2e-19 69.1 29.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159041087|ref|YP_001540339.1| - 0.0009 18.2 0.2 0.0009 18.2 0.2 3.6 2 1 2 4 4 4 2 MFS_1 like family DUF3961 PF13106.6 gi|159041087|ref|YP_001540339.1| - 0.27 10.9 3.6 0.6 9.8 2.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3961) ABC_tran PF00005.27 gi|159041088|ref|YP_001540340.1| - 1.1e-31 110.1 0.0 1.7e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041088|ref|YP_001540340.1| - 1e-06 28.8 0.8 0.0038 17.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|159041088|ref|YP_001540340.1| - 0.00045 20.0 0.2 0.0032 17.2 0.1 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|159041088|ref|YP_001540340.1| - 0.00081 18.9 0.6 0.16 11.4 0.3 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|159041088|ref|YP_001540340.1| - 0.00099 18.8 0.3 0.0021 17.8 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|159041088|ref|YP_001540340.1| - 0.0018 18.2 0.2 0.0038 17.1 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|159041088|ref|YP_001540340.1| - 0.0031 18.0 0.7 0.0053 17.3 0.7 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159041088|ref|YP_001540340.1| - 0.0057 17.1 0.0 0.022 15.2 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|159041088|ref|YP_001540340.1| - 0.0059 16.8 0.1 0.14 12.4 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE_2 PF08402.10 gi|159041088|ref|YP_001540340.1| - 0.017 15.3 0.0 0.043 14.0 0.0 1.8 1 0 0 1 1 1 0 TOBE domain Zeta_toxin PF06414.12 gi|159041088|ref|YP_001540340.1| - 0.018 14.3 0.0 0.034 13.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Adeno_IVa2 PF02456.15 gi|159041088|ref|YP_001540340.1| - 0.029 13.2 0.5 0.19 10.5 0.2 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_16 PF13191.6 gi|159041088|ref|YP_001540340.1| - 0.029 14.8 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|159041088|ref|YP_001540340.1| - 0.039 14.0 0.1 0.39 10.7 0.0 2.2 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|159041088|ref|YP_001540340.1| - 0.043 13.7 0.1 0.076 12.9 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|159041088|ref|YP_001540340.1| - 0.055 13.7 0.1 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|159041088|ref|YP_001540340.1| - 0.058 13.5 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain cobW PF02492.19 gi|159041088|ref|YP_001540340.1| - 0.065 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|159041088|ref|YP_001540340.1| - 0.08 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|159041088|ref|YP_001540340.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|159041088|ref|YP_001540340.1| - 0.14 10.8 0.1 0.23 10.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|159041088|ref|YP_001540340.1| - 0.14 11.5 0.5 4.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_10 PF12846.7 gi|159041088|ref|YP_001540340.1| - 0.15 11.0 0.1 0.73 8.7 0.2 1.8 2 0 0 2 2 2 0 AAA-like domain RNA12 PF10443.9 gi|159041088|ref|YP_001540340.1| - 0.2 10.3 0.1 0.29 9.8 0.1 1.1 1 0 0 1 1 1 0 RNA12 protein Rad17 PF03215.15 gi|159041088|ref|YP_001540340.1| - 0.21 11.5 0.0 0.81 9.6 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|159041089|ref|YP_001540341.1| - 1.2e-16 61.0 20.4 1.2e-16 61.0 20.4 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|159041090|ref|YP_001540342.1| - 1e-39 136.7 0.0 1.5e-39 136.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|159041090|ref|YP_001540342.1| - 0.017 15.1 0.1 0.049 13.6 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Eno-Rase_NADH_b PF12242.8 gi|159041090|ref|YP_001540342.1| - 0.6 9.9 2.7 1.2 9.0 2.7 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Med3 PF11593.8 gi|159041090|ref|YP_001540342.1| - 2.6 7.2 5.4 14 4.7 3.7 2.1 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal B277 PF17623.2 gi|159041090|ref|YP_001540342.1| - 9.4 5.2 15.3 1.9 7.5 9.8 2.0 2 0 0 2 2 2 0 Domain of unknown function vATP-synt_AC39 PF01992.16 gi|159041091|ref|YP_001540343.1| - 4e-29 102.2 0.0 4.6e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ECR1_N PF14382.6 gi|159041092|ref|YP_001540344.1| - 6e-09 35.6 1.4 9.1e-09 35.0 0.0 2.1 3 0 0 3 3 1 1 Exosome complex exonuclease RRP4 N-terminal region OrfB_Zn_ribbon PF07282.11 gi|159041092|ref|YP_001540344.1| - 0.0044 16.9 0.4 0.0076 16.1 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|159041092|ref|YP_001540344.1| - 0.033 14.2 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon IBR PF01485.21 gi|159041092|ref|YP_001540344.1| - 0.064 13.5 0.9 0.11 12.8 0.9 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_4 PF13717.6 gi|159041092|ref|YP_001540344.1| - 0.07 13.1 6.8 3.4 7.7 5.4 2.7 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|159041092|ref|YP_001540344.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|159041092|ref|YP_001540344.1| - 0.15 12.1 0.1 0.37 10.8 0.1 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|159041092|ref|YP_001540344.1| - 0.16 11.4 4.7 0.87 9.1 4.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|159041092|ref|YP_001540344.1| - 0.17 12.1 3.0 0.26 11.5 3.0 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RPA_interact_C PF14768.6 gi|159041092|ref|YP_001540344.1| - 0.18 12.4 0.9 0.26 11.9 0.9 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal UPF0547 PF10571.9 gi|159041092|ref|YP_001540344.1| - 0.21 11.7 8.0 0.84 9.8 8.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.26 gi|159041092|ref|YP_001540344.1| - 0.21 12.1 1.3 0.6 10.7 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Sec23_Sec24 PF04810.15 gi|159041092|ref|YP_001540344.1| - 0.33 11.0 3.1 1.2 9.2 3.1 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger zf-C2H2_3 PF13878.6 gi|159041092|ref|YP_001540344.1| - 0.33 10.8 1.1 3.4 7.6 0.0 2.4 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn-ribbon_8 PF09723.10 gi|159041092|ref|YP_001540344.1| - 1.1 9.4 4.1 8.7 6.6 4.2 2.0 1 1 1 2 2 2 0 Zinc ribbon domain GAGA PF09237.11 gi|159041092|ref|YP_001540344.1| - 5.3 6.9 5.6 21 5.0 0.2 2.5 1 1 1 2 2 2 0 GAGA factor zinc_ribbon_5 PF13719.6 gi|159041092|ref|YP_001540344.1| - 9.5 6.1 7.4 57 3.6 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain AAA_5 PF07728.14 gi|159041094|ref|YP_001540346.1| - 1.5e-21 76.9 0.0 3.5e-21 75.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|159041094|ref|YP_001540346.1| - 3.7e-19 68.9 0.0 6.3e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|159041094|ref|YP_001540346.1| - 1.6e-10 40.9 0.0 9.2e-10 38.5 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|159041094|ref|YP_001540346.1| - 1.7e-08 34.9 0.0 3.9e-08 33.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159041094|ref|YP_001540346.1| - 1.9e-08 34.7 0.0 4.4e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|159041094|ref|YP_001540346.1| - 2e-07 30.6 0.6 1.6e-05 24.4 0.1 2.6 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|159041094|ref|YP_001540346.1| - 1.6e-05 25.0 0.0 3.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|159041094|ref|YP_001540346.1| - 1.9e-05 24.5 0.7 0.018 14.8 0.1 2.4 1 1 1 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|159041094|ref|YP_001540346.1| - 2e-05 24.4 0.0 3.6e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041094|ref|YP_001540346.1| - 9.1e-05 22.9 0.0 0.00035 21.0 0.0 2.2 2 1 0 2 2 1 1 AAA ATPase domain AAA_PrkA PF08298.11 gi|159041094|ref|YP_001540346.1| - 0.00023 20.2 0.1 0.13 11.1 0.0 2.3 1 1 1 2 2 2 2 PrkA AAA domain MCM PF00493.23 gi|159041094|ref|YP_001540346.1| - 0.00026 20.2 0.1 0.0008 18.6 0.0 1.8 2 0 0 2 2 2 1 MCM P-loop domain AAA_18 PF13238.6 gi|159041094|ref|YP_001540346.1| - 0.00063 20.3 0.0 0.003 18.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|159041094|ref|YP_001540346.1| - 0.00065 19.7 0.0 0.011 15.7 0.0 2.3 1 1 1 2 2 2 1 NTPase NACHT PF05729.12 gi|159041094|ref|YP_001540346.1| - 0.0009 19.2 0.0 0.0025 17.8 0.0 1.9 2 1 0 2 2 2 1 NACHT domain AAA_7 PF12775.7 gi|159041094|ref|YP_001540346.1| - 0.00099 18.7 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DEAD PF00270.29 gi|159041094|ref|YP_001540346.1| - 0.004 16.9 0.1 1.7 8.4 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase ATP-synt_ab PF00006.25 gi|159041094|ref|YP_001540346.1| - 0.0082 15.8 0.0 0.0091 15.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 gi|159041094|ref|YP_001540346.1| - 0.009 16.0 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|159041094|ref|YP_001540346.1| - 0.011 15.5 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|159041094|ref|YP_001540346.1| - 0.011 15.4 0.0 0.49 10.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|159041094|ref|YP_001540346.1| - 0.012 16.1 0.1 0.037 14.5 0.0 1.8 2 0 0 2 2 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|159041094|ref|YP_001540346.1| - 0.018 15.0 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 gi|159041094|ref|YP_001540346.1| - 0.02 15.2 0.3 0.46 10.8 0.3 2.4 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|159041094|ref|YP_001540346.1| - 0.022 14.5 0.1 0.068 12.9 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATPase_2 PF01637.18 gi|159041094|ref|YP_001540346.1| - 0.029 14.3 0.0 0.63 9.9 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|159041094|ref|YP_001540346.1| - 0.043 13.0 0.0 0.083 12.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_6 PF12774.7 gi|159041094|ref|YP_001540346.1| - 0.072 12.1 0.2 1.5 7.7 0.0 2.1 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region AAA_2 PF07724.14 gi|159041094|ref|YP_001540346.1| - 0.092 12.9 0.0 0.2 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|159041094|ref|YP_001540346.1| - 0.099 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|159041094|ref|YP_001540346.1| - 0.11 12.9 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 1 0 RNA helicase ATPase PF06745.13 gi|159041094|ref|YP_001540346.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 KaiC Sigma54_activ_2 PF14532.6 gi|159041094|ref|YP_001540346.1| - 0.13 12.4 0.0 0.4 10.8 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain Aminotran_1_2 PF00155.21 gi|159041095|ref|YP_001540347.1| - 2.9e-35 122.1 0.0 3.6e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.15 gi|159041096|ref|YP_001540348.1| - 4.5e-33 115.2 9.5 5.1e-33 115.0 9.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF3687 PF12459.8 gi|159041096|ref|YP_001540348.1| - 0.023 14.2 0.0 0.075 12.6 0.0 1.9 1 0 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein RseC_MucC PF04246.12 gi|159041096|ref|YP_001540348.1| - 0.49 10.4 8.1 0.19 11.7 0.5 2.5 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC UPF0086 PF01868.16 gi|159041097|ref|YP_001540349.1| - 1.1e-05 25.3 0.0 1.1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S19 PF00203.21 gi|159041098|ref|YP_001540350.1| - 2.4e-29 101.1 0.0 3.8e-29 100.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_S17 PF00366.20 gi|159041099|ref|YP_001540351.1| - 3.6e-20 71.8 0.4 5.6e-20 71.2 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|159041099|ref|YP_001540351.1| - 0.00043 20.6 0.0 0.00084 19.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|159041099|ref|YP_001540351.1| - 0.53 10.1 2.6 1.1 9.1 2.6 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain FolB PF02152.18 gi|159041100|ref|YP_001540352.1| - 1.2e-31 109.5 0.2 2e-31 108.8 0.2 1.3 1 0 0 1 1 1 1 Dihydroneopterin aldolase HPPK PF01288.20 gi|159041100|ref|YP_001540352.1| - 1.4e-26 93.2 0.0 2.1e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) adh_short_C2 PF13561.6 gi|159041101|ref|YP_001540353.1| - 6.3e-42 143.7 0.0 7.7e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159041101|ref|YP_001540353.1| - 2.4e-33 115.2 0.1 2.9e-33 115.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159041101|ref|YP_001540353.1| - 2.8e-09 37.1 0.0 3.4e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|159041101|ref|YP_001540353.1| - 1.6e-07 31.1 0.1 5.2e-06 26.1 0.0 2.3 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|159041101|ref|YP_001540353.1| - 0.014 14.4 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|159041101|ref|YP_001540353.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase 2-Hacid_dh_C PF02826.19 gi|159041101|ref|YP_001540353.1| - 0.099 12.0 0.1 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peptidase_M48 PF01435.18 gi|159041102|ref|YP_001540354.1| - 3.8e-29 101.9 0.0 4.3e-28 98.4 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|159041102|ref|YP_001540354.1| - 0.00036 19.8 0.5 0.00062 19.1 0.4 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF4131 PF13567.6 gi|159041102|ref|YP_001540354.1| - 2 8.1 6.8 4 7.1 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) PEP-CTERM PF07589.11 gi|159041102|ref|YP_001540354.1| - 3.7 7.8 6.5 1.9 8.7 0.3 2.9 2 0 0 2 2 2 0 PEP-CTERM motif IncE PF17627.2 gi|159041102|ref|YP_001540354.1| - 4.7 7.2 5.5 4.8 7.2 2.8 1.9 2 0 0 2 2 2 0 Inclusion membrane protein E UbiA PF01040.18 gi|159041103|ref|YP_001540355.1| - 8.4e-47 159.6 24.4 1e-46 159.3 24.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family GTP_cyclohydroI PF01227.22 gi|159041104|ref|YP_001540356.1| - 1.7e-60 203.5 0.1 2e-60 203.3 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 gi|159041104|ref|YP_001540356.1| - 0.07 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 QueF-like protein FlgD_ig PF13860.6 gi|159041105|ref|YP_001540357.1| - 0.058 13.3 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 FlgD Ig-like domain Orn_Arg_deC_N PF02784.16 gi|159041106|ref|YP_001540358.1| - 3.6e-36 124.8 0.0 5.1e-36 124.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|159041106|ref|YP_001540358.1| - 2.3e-25 88.7 0.0 2.8e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Methyltransf_11 PF08241.12 gi|159041107|ref|YP_001540359.1| - 1.8e-13 50.9 0.0 4.1e-13 49.8 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041107|ref|YP_001540359.1| - 3.8e-12 46.7 0.0 6.6e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159041107|ref|YP_001540359.1| - 2.8e-11 43.5 0.0 3.5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159041107|ref|YP_001540359.1| - 1e-08 35.8 0.0 3.3e-08 34.2 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041107|ref|YP_001540359.1| - 1.5e-05 24.8 0.0 2.8e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159041107|ref|YP_001540359.1| - 0.0026 17.1 0.0 0.0032 16.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|159041107|ref|YP_001540359.1| - 0.034 13.9 0.0 0.048 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|159041107|ref|YP_001540359.1| - 0.035 13.5 0.0 0.089 12.2 0.0 1.6 1 1 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|159041107|ref|YP_001540359.1| - 0.2 11.6 0.0 0.3 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain dUTPase PF00692.19 gi|159041108|ref|YP_001540360.1| - 1.8e-15 56.8 0.0 5.7e-14 51.9 0.0 2.0 1 1 1 2 2 2 2 dUTPase DCD PF06559.11 gi|159041108|ref|YP_001540360.1| - 0.0073 15.1 0.0 7.5 5.2 0.0 2.9 2 1 1 3 3 3 3 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Pectate_lyase_3 PF12708.7 gi|159041109|ref|YP_001540361.1| - 2.5e-05 24.2 1.5 3.8e-05 23.6 1.1 1.6 1 1 0 1 1 1 1 Pectate lyase superfamily protein DUF4274 PF14096.6 gi|159041109|ref|YP_001540361.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4274) HAD_2 PF13419.6 gi|159041110|ref|YP_001540362.1| - 1.6e-14 54.4 0.0 2e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|159041110|ref|YP_001540362.1| - 2.2e-08 34.7 0.0 2.7e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|159041110|ref|YP_001540362.1| - 0.0012 18.8 0.0 0.004 17.2 0.0 1.9 2 1 0 2 2 2 1 HAD-hyrolase-like SIS PF01380.22 gi|159041111|ref|YP_001540363.1| - 2.8e-46 156.6 1.4 4.6e-30 104.2 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|159041111|ref|YP_001540363.1| - 1.1e-22 80.6 0.0 2e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|159041111|ref|YP_001540363.1| - 3.1e-19 69.1 0.0 5e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|159041111|ref|YP_001540363.1| - 0.00077 19.5 0.0 0.0015 18.5 0.0 1.6 1 0 0 1 1 1 1 SIS domain GATase_4 PF13230.6 gi|159041111|ref|YP_001540363.1| - 0.004 16.1 0.0 0.0067 15.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.24 gi|159041112|ref|YP_001540364.1| - 3.2e-16 58.3 13.6 0.00021 20.9 0.3 5.4 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|159041112|ref|YP_001540364.1| - 0.00063 20.1 0.0 0.0011 19.4 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|159041112|ref|YP_001540364.1| - 0.001 18.8 19.6 0.33 10.7 1.8 5.8 3 1 3 6 6 6 3 Hexapeptide repeat of succinyl-transferase TylF PF05711.11 gi|159041112|ref|YP_001540364.1| - 0.049 12.9 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) Chorismate_synt PF01264.21 gi|159041113|ref|YP_001540365.1| - 1.3e-118 395.5 0.0 1.5e-118 395.3 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase PaREP1 PF05942.11 gi|159041114|ref|YP_001540366.1| - 3.2e-36 123.8 4.2 4.9e-36 123.1 4.2 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|159041114|ref|YP_001540366.1| - 0.001 19.1 2.7 0.0022 18.0 0.2 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF357) YfdX PF10938.8 gi|159041114|ref|YP_001540366.1| - 0.0049 16.8 0.2 0.012 15.5 0.2 1.6 1 1 0 1 1 1 1 YfdX protein ParE_toxin PF05016.15 gi|159041114|ref|YP_001540366.1| - 0.013 16.1 0.6 0.026 15.1 0.6 1.5 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE 14-3-3 PF00244.20 gi|159041114|ref|YP_001540366.1| - 0.041 13.4 0.6 0.041 13.4 0.6 1.6 2 0 0 2 2 2 0 14-3-3 protein HEPN PF05168.14 gi|159041114|ref|YP_001540366.1| - 0.27 11.4 7.0 1.9 8.7 7.0 2.1 1 1 0 1 1 1 0 HEPN domain PTS_IIA PF02255.16 gi|159041114|ref|YP_001540366.1| - 1 9.4 4.3 2.6 8.1 1.1 2.2 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit ODV-E18 PF10717.9 gi|159041115|ref|YP_001540367.1| - 0.65 9.9 5.8 0.68 9.8 1.9 2.3 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Transglut_core PF01841.19 gi|159041116|ref|YP_001540368.1| - 0.0047 17.4 0.0 0.011 16.2 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily AAA_3 PF07726.11 gi|159041117|ref|YP_001540369.1| - 8e-63 210.1 0.0 1.7e-62 209.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|159041117|ref|YP_001540369.1| - 7.1e-18 64.2 0.1 1.3e-17 63.4 0.1 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|159041117|ref|YP_001540369.1| - 1.1e-13 51.3 0.0 2.4e-13 50.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|159041117|ref|YP_001540369.1| - 1.7e-08 35.0 0.1 5.8e-07 30.0 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|159041117|ref|YP_001540369.1| - 7.2e-06 25.8 0.0 0.014 15.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|159041117|ref|YP_001540369.1| - 1.2e-05 25.1 0.1 8.6e-05 22.3 0.0 2.2 2 1 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|159041117|ref|YP_001540369.1| - 0.00023 21.7 0.0 0.00053 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041117|ref|YP_001540369.1| - 0.00029 21.3 0.0 0.00058 20.3 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain MCM PF00493.23 gi|159041117|ref|YP_001540369.1| - 0.00047 19.3 0.0 0.0008 18.6 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain TsaE PF02367.17 gi|159041117|ref|YP_001540369.1| - 0.0015 18.5 0.1 0.0027 17.7 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|159041117|ref|YP_001540369.1| - 0.0016 17.8 0.1 0.021 14.2 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|159041117|ref|YP_001540369.1| - 0.0027 18.0 0.0 0.0067 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF1160 PF06648.11 gi|159041117|ref|YP_001540369.1| - 0.0055 16.7 0.1 0.012 15.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1160) AAA_33 PF13671.6 gi|159041117|ref|YP_001540369.1| - 0.0082 16.3 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|159041117|ref|YP_001540369.1| - 0.0092 15.9 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Viral_helicase1 PF01443.18 gi|159041117|ref|YP_001540369.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|159041117|ref|YP_001540369.1| - 0.021 14.5 0.1 0.048 13.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain Glycoprotein_B PF00606.18 gi|159041117|ref|YP_001540369.1| - 0.025 14.0 0.0 0.05 13.0 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B ectodomain AAA_2 PF07724.14 gi|159041117|ref|YP_001540369.1| - 0.029 14.5 0.0 0.07 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|159041117|ref|YP_001540369.1| - 0.03 14.0 0.1 0.057 13.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|159041117|ref|YP_001540369.1| - 0.045 13.8 0.0 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|159041117|ref|YP_001540369.1| - 0.063 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|159041117|ref|YP_001540369.1| - 0.074 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_7 PF12775.7 gi|159041117|ref|YP_001540369.1| - 0.1 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|159041117|ref|YP_001540369.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|159041117|ref|YP_001540369.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Thymidylate_kin PF02223.17 gi|159041117|ref|YP_001540369.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase MCM_lid PF17855.1 gi|159041117|ref|YP_001540369.1| - 0.12 12.8 0.1 0.28 11.6 0.1 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_17 PF13207.6 gi|159041117|ref|YP_001540369.1| - 0.13 12.7 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|159041117|ref|YP_001540369.1| - 0.13 11.7 0.2 0.66 9.4 0.0 2.0 2 1 1 3 3 3 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 gi|159041117|ref|YP_001540369.1| - 0.15 12.6 0.0 0.4 11.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.17 gi|159041117|ref|YP_001540369.1| - 0.16 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein CPT PF07931.12 gi|159041117|ref|YP_001540369.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NB-ARC PF00931.22 gi|159041117|ref|YP_001540369.1| - 0.19 10.9 0.0 0.41 9.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain DUF58 PF01882.18 gi|159041118|ref|YP_001540370.1| - 3.7e-08 33.5 0.0 8.3e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 PT-TG PF14449.6 gi|159041118|ref|YP_001540370.1| - 0.13 12.2 0.2 4 7.4 0.0 2.4 2 0 0 2 2 2 0 Pre-toxin TG Holin_BlyA PF05102.12 gi|159041119|ref|YP_001540371.1| - 0.029 14.3 3.0 0.029 14.3 3.0 2.1 2 0 0 2 2 2 0 holin, BlyA family CPBP PF02517.16 gi|159041119|ref|YP_001540371.1| - 0.086 13.2 6.7 0.047 14.1 4.9 1.5 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease PBP PF01161.20 gi|159041120|ref|YP_001540372.1| - 3.1e-23 82.5 0.0 3.9e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Radical_SAM PF04055.21 gi|159041121|ref|YP_001540373.1| - 2.3e-20 73.7 0.1 1.3e-18 68.0 0.0 2.9 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|159041121|ref|YP_001540373.1| - 0.00067 19.9 0.0 0.0018 18.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|159041121|ref|YP_001540373.1| - 0.00076 18.8 3.7 0.092 12.2 0.2 3.4 3 0 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|159041121|ref|YP_001540373.1| - 0.0099 15.6 2.5 0.55 10.0 0.3 2.9 2 0 0 2 2 2 1 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|159041121|ref|YP_001540373.1| - 0.029 14.5 0.1 0.24 11.6 0.0 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NOB1_Zn_bind PF08772.11 gi|159041121|ref|YP_001540373.1| - 0.26 11.5 3.9 1.4 9.1 0.1 2.7 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|159041121|ref|YP_001540373.1| - 0.28 11.2 0.1 0.28 11.2 0.1 2.7 3 0 0 3 3 3 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|159041121|ref|YP_001540373.1| - 0.58 9.7 8.3 0.44 10.1 3.7 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding PadR PF03551.14 gi|159041122|ref|YP_001540374.1| - 0.0014 18.5 0.2 0.0018 18.2 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|159041122|ref|YP_001540374.1| - 0.004 17.0 0.8 0.008 16.0 0.8 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|159041122|ref|YP_001540374.1| - 0.053 13.6 0.0 0.059 13.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DprA_WH PF17782.1 gi|159041122|ref|YP_001540374.1| - 0.13 12.4 0.1 0.19 11.9 0.1 1.2 1 0 0 1 1 1 0 DprA winged helix domain AAA PF00004.29 gi|159041123|ref|YP_001540375.1| - 5.7e-100 330.9 0.0 2.4e-49 167.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|159041123|ref|YP_001540375.1| - 9.9e-31 105.3 0.4 3.1e-14 52.5 0.1 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|159041123|ref|YP_001540375.1| - 3.6e-29 100.8 0.3 4e-28 97.4 1.3 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|159041123|ref|YP_001540375.1| - 4.1e-17 62.4 0.0 2.8e-07 30.4 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|159041123|ref|YP_001540375.1| - 3.1e-13 50.5 0.1 4.3e-06 27.2 0.0 3.9 3 1 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|159041123|ref|YP_001540375.1| - 6.5e-13 49.1 0.0 8.8e-06 25.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|159041123|ref|YP_001540375.1| - 2.4e-12 47.3 0.2 0.00043 20.6 0.0 4.4 4 1 0 4 4 3 2 AAA domain AAA_5 PF07728.14 gi|159041123|ref|YP_001540375.1| - 3.3e-12 46.6 2.0 0.00017 21.6 0.4 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|159041123|ref|YP_001540375.1| - 8.6e-12 45.4 0.0 5.7e-05 23.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|159041123|ref|YP_001540375.1| - 1.4e-10 40.9 2.7 0.00039 19.7 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain CDC48_2 PF02933.17 gi|159041123|ref|YP_001540375.1| - 2.7e-10 39.9 0.4 2.7e-10 39.9 0.4 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.6 gi|159041123|ref|YP_001540375.1| - 1e-09 38.5 0.0 0.00062 19.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|159041123|ref|YP_001540375.1| - 1.1e-09 38.8 0.0 0.001 19.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|159041123|ref|YP_001540375.1| - 1.7e-09 37.6 0.1 0.0049 16.6 0.0 3.4 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|159041123|ref|YP_001540375.1| - 7.8e-08 32.9 0.0 0.023 15.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain UFD1 PF03152.14 gi|159041123|ref|YP_001540375.1| - 9.7e-08 31.7 2.0 4.1e-07 29.6 2.1 1.9 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 Mg_chelatase PF01078.21 gi|159041123|ref|YP_001540375.1| - 6.9e-07 28.9 0.9 0.033 13.6 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|159041123|ref|YP_001540375.1| - 1.6e-06 27.8 1.0 0.15 11.5 0.0 3.5 3 0 0 3 3 3 2 PhoH-like protein Sigma54_activat PF00158.26 gi|159041123|ref|YP_001540375.1| - 2.3e-06 27.4 0.1 0.09 12.5 0.0 3.2 2 2 0 2 2 2 2 Sigma-54 interaction domain Vps4_C PF09336.10 gi|159041123|ref|YP_001540375.1| - 3.1e-06 27.1 0.5 0.0031 17.5 0.1 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.22 gi|159041123|ref|YP_001540375.1| - 8.2e-06 26.2 0.0 0.15 12.4 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|159041123|ref|YP_001540375.1| - 8.5e-06 25.4 0.0 0.056 12.9 0.0 2.7 3 0 0 3 3 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 gi|159041123|ref|YP_001540375.1| - 1.2e-05 25.1 0.0 0.19 11.4 0.0 3.0 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|159041123|ref|YP_001540375.1| - 1.3e-05 24.7 0.4 0.52 9.6 0.0 3.7 2 1 0 3 3 3 2 KaiC TsaE PF02367.17 gi|159041123|ref|YP_001540375.1| - 1.4e-05 25.0 0.0 0.37 10.8 0.0 3.2 3 0 0 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|159041123|ref|YP_001540375.1| - 3.2e-05 23.3 0.6 0.3 10.4 0.0 2.9 3 0 0 3 3 2 2 Zeta toxin DUF815 PF05673.13 gi|159041123|ref|YP_001540375.1| - 4.7e-05 22.7 0.0 0.31 10.2 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|159041123|ref|YP_001540375.1| - 5.3e-05 23.7 0.0 0.26 11.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.11 gi|159041123|ref|YP_001540375.1| - 0.00028 20.8 0.0 0.85 9.5 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|159041123|ref|YP_001540375.1| - 0.00033 20.3 5.5 0.9 9.1 0.0 4.2 3 1 1 4 4 4 1 AAA domain Parvo_NS1 PF01057.17 gi|159041123|ref|YP_001540375.1| - 0.00039 19.6 0.1 0.8 8.7 0.0 2.5 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|159041123|ref|YP_001540375.1| - 0.00041 20.1 0.1 0.49 10.1 0.0 2.9 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|159041123|ref|YP_001540375.1| - 0.00042 20.4 0.0 0.8 9.8 0.0 2.8 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|159041123|ref|YP_001540375.1| - 0.00044 20.6 0.9 1.2 9.4 0.2 3.0 2 1 1 3 3 3 1 AAA domain NACHT PF05729.12 gi|159041123|ref|YP_001540375.1| - 0.00075 19.4 0.5 1 9.3 0.0 3.0 3 0 0 3 3 3 1 NACHT domain Guanylate_kin PF00625.21 gi|159041123|ref|YP_001540375.1| - 0.0013 18.4 0.1 18 5.0 0.0 4.3 2 2 2 4 4 4 0 Guanylate kinase DUF2075 PF09848.9 gi|159041123|ref|YP_001540375.1| - 0.0016 17.7 0.0 0.79 8.9 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|159041123|ref|YP_001540375.1| - 0.0016 18.2 0.0 0.058 13.1 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|159041123|ref|YP_001540375.1| - 0.0026 17.6 0.0 2.4 7.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|159041123|ref|YP_001540375.1| - 0.0031 17.9 0.0 5.6 7.4 0.0 3.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|159041123|ref|YP_001540375.1| - 0.0034 17.3 3.1 7.1 6.5 0.0 4.7 4 1 1 5 5 5 0 NTPase PduV-EutP PF10662.9 gi|159041123|ref|YP_001540375.1| - 0.0035 17.1 0.0 1.6 8.4 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|159041123|ref|YP_001540375.1| - 0.004 16.4 0.0 2.9 7.0 0.0 2.6 2 0 0 2 2 2 1 NB-ARC domain Bac_DnaA PF00308.18 gi|159041123|ref|YP_001540375.1| - 0.0065 16.3 0.0 2.6 7.8 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein Cytidylate_kin2 PF13189.6 gi|159041123|ref|YP_001540375.1| - 0.0094 16.1 0.0 4 7.5 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family ATPase_2 PF01637.18 gi|159041123|ref|YP_001540375.1| - 0.023 14.6 2.4 11 5.9 0.1 3.7 3 2 0 3 3 2 0 ATPase domain predominantly from Archaea TniB PF05621.11 gi|159041123|ref|YP_001540375.1| - 0.028 13.8 0.0 7.3 6.0 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein T2SSE PF00437.20 gi|159041123|ref|YP_001540375.1| - 0.03 13.4 0.1 5.7 5.9 0.1 2.8 2 1 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|159041123|ref|YP_001540375.1| - 0.031 14.2 0.0 8 6.3 0.0 3.0 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|159041123|ref|YP_001540375.1| - 0.035 13.8 0.0 7.2 6.4 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Cytidylate_kin PF02224.18 gi|159041123|ref|YP_001540375.1| - 0.043 13.5 0.1 8.4 6.1 0.0 2.9 2 0 0 2 2 2 0 Cytidylate kinase IPT PF01745.16 gi|159041123|ref|YP_001540375.1| - 0.049 13.0 0.3 2 7.8 0.0 2.7 3 0 0 3 3 2 0 Isopentenyl transferase MCM PF00493.23 gi|159041123|ref|YP_001540375.1| - 0.099 11.7 0.0 11 5.0 0.0 2.5 2 0 0 2 2 2 0 MCM P-loop domain SRPRB PF09439.10 gi|159041123|ref|YP_001540375.1| - 0.11 11.9 0.0 4 6.8 0.0 2.6 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit AFG1_ATPase PF03969.16 gi|159041123|ref|YP_001540375.1| - 0.12 11.3 0.0 13 4.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase SKI PF01202.22 gi|159041123|ref|YP_001540375.1| - 0.13 12.4 0.0 13 5.9 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Roc PF08477.13 gi|159041123|ref|YP_001540375.1| - 0.17 12.1 0.0 13 6.0 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase EF1_GNE PF00736.19 gi|159041124|ref|YP_001540376.1| - 8.8e-14 51.5 0.1 9.7e-14 51.3 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain P2 PF07194.11 gi|159041124|ref|YP_001540376.1| - 0.061 13.4 1.7 0.76 9.9 1.5 2.1 1 1 1 2 2 2 0 P2 response regulator binding domain DUF1610 PF07754.11 gi|159041125|ref|YP_001540377.1| - 1.6e-11 43.9 11.0 1.8e-11 43.7 4.8 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf_UBZ PF18439.1 gi|159041125|ref|YP_001540377.1| - 0.001 18.6 12.2 0.43 10.2 0.0 4.0 3 1 1 4 4 4 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|159041125|ref|YP_001540377.1| - 0.0021 17.4 11.4 1.1 8.8 0.4 3.4 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|159041125|ref|YP_001540377.1| - 0.0033 17.4 11.4 0.025 14.6 5.9 2.2 1 1 1 2 2 2 1 Double zinc ribbon DUF2752 PF10825.8 gi|159041125|ref|YP_001540377.1| - 0.0036 17.3 8.3 0.023 14.7 0.1 3.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2752) zf-CHY PF05495.12 gi|159041125|ref|YP_001540377.1| - 0.0046 17.4 8.6 0.0095 16.4 8.5 1.5 1 1 0 1 1 1 1 CHY zinc finger Zn_Tnp_IS91 PF14319.6 gi|159041125|ref|YP_001540377.1| - 0.0057 16.7 7.3 0.0072 16.3 0.2 2.1 1 1 1 2 2 2 1 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|159041125|ref|YP_001540377.1| - 0.0058 16.7 1.9 0.0058 16.7 1.9 3.0 1 1 1 2 2 2 1 Zinc ribbon domain C1_2 PF03107.16 gi|159041125|ref|YP_001540377.1| - 0.0074 16.6 11.3 0.029 14.7 3.6 2.2 1 1 1 2 2 2 1 C1 domain HscB_4_cys PF18256.1 gi|159041125|ref|YP_001540377.1| - 0.012 15.5 2.3 0.012 15.5 2.3 2.9 2 1 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif HypA PF01155.19 gi|159041125|ref|YP_001540377.1| - 0.012 15.7 9.8 0.039 14.0 0.3 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|159041125|ref|YP_001540377.1| - 0.025 14.3 20.9 0.19 11.5 6.8 3.6 2 2 1 3 3 3 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|159041125|ref|YP_001540377.1| - 0.047 13.9 1.9 0.047 13.9 1.9 2.6 1 1 1 2 2 2 0 Ribosomal L32p protein family Desulfoferrod_N PF06397.12 gi|159041125|ref|YP_001540377.1| - 0.073 12.7 14.5 0.4 10.4 0.6 3.6 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain Auto_anti-p27 PF06677.12 gi|159041125|ref|YP_001540377.1| - 0.078 13.2 1.1 0.078 13.2 1.1 2.4 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_SprT PF17283.2 gi|159041125|ref|YP_001540377.1| - 0.078 12.9 20.7 3.8 7.5 0.3 3.6 2 1 0 2 2 2 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|159041125|ref|YP_001540377.1| - 0.15 12.0 11.8 0.89 9.5 7.9 2.4 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-B_box PF00643.24 gi|159041125|ref|YP_001540377.1| - 0.15 12.2 10.9 3.1 8.0 0.1 3.0 2 1 1 3 3 3 0 B-box zinc finger Zn_ribbon_recom PF13408.6 gi|159041125|ref|YP_001540377.1| - 0.16 12.5 9.7 0.24 12.0 9.7 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-RING_5 PF14634.6 gi|159041125|ref|YP_001540377.1| - 0.18 11.8 12.2 28 4.8 12.5 2.8 1 1 1 2 2 2 0 zinc-RING finger domain PolC_DP2 PF03833.13 gi|159041125|ref|YP_001540377.1| - 0.22 9.3 3.2 0.25 9.1 3.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-UBP PF02148.19 gi|159041125|ref|YP_001540377.1| - 0.25 11.7 8.1 4.1 7.8 0.8 2.9 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-C6H2 PF15801.5 gi|159041125|ref|YP_001540377.1| - 0.26 11.6 7.4 1.6 9.1 1.3 2.5 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding zf-RING_9 PF13901.6 gi|159041125|ref|YP_001540377.1| - 0.26 11.3 5.7 0.35 10.8 5.7 1.2 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon Rubredoxin_2 PF18073.1 gi|159041125|ref|YP_001540377.1| - 0.32 10.7 16.8 8.5 6.2 0.2 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|159041125|ref|YP_001540377.1| - 0.34 10.7 15.0 4.6 7.0 0.2 3.9 2 1 2 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_Tnp_IS1595 PF12760.7 gi|159041125|ref|YP_001540377.1| - 0.36 10.8 18.6 7 6.7 8.5 3.7 3 1 0 3 3 3 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.13 gi|159041125|ref|YP_001540377.1| - 0.44 10.6 8.6 5.5 7.1 0.1 2.6 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type RecO_C PF02565.15 gi|159041125|ref|YP_001540377.1| - 0.52 10.1 3.1 0.36 10.6 2.2 1.3 1 1 0 1 1 1 0 Recombination protein O C terminal zf-TFIIB PF13453.6 gi|159041125|ref|YP_001540377.1| - 0.53 9.7 15.9 3.2 7.1 10.7 3.5 2 1 1 3 3 3 0 Transcription factor zinc-finger IBR PF01485.21 gi|159041125|ref|YP_001540377.1| - 0.71 10.1 10.2 15 5.9 10.3 2.1 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain PhnA_Zn_Ribbon PF08274.12 gi|159041125|ref|YP_001540377.1| - 0.75 9.8 10.9 2.7 8.0 0.3 3.9 2 1 1 3 3 3 0 PhnA Zinc-Ribbon NMD3 PF04981.13 gi|159041125|ref|YP_001540377.1| - 0.77 9.2 7.8 0.93 8.9 7.8 1.0 1 0 0 1 1 1 0 NMD3 family Elf1 PF05129.13 gi|159041125|ref|YP_001540377.1| - 0.96 9.5 7.8 1.5 8.9 4.3 2.5 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like NRDD PF13597.6 gi|159041125|ref|YP_001540377.1| - 0.97 8.1 12.3 1.2 7.9 4.2 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase TF_Zn_Ribbon PF08271.12 gi|159041125|ref|YP_001540377.1| - 1.6 8.3 18.0 0.54 9.8 5.1 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding zf-tcix PF14952.6 gi|159041125|ref|YP_001540377.1| - 2.6 7.8 15.6 1.2 8.8 3.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DUF1272 PF06906.11 gi|159041125|ref|YP_001540377.1| - 5.6 7.1 13.5 7.4 6.8 2.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) NOB1_Zn_bind PF08772.11 gi|159041125|ref|YP_001540377.1| - 5.8 7.2 11.4 1.1 9.5 5.9 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-Mss51 PF13824.6 gi|159041125|ref|YP_001540377.1| - 9.3 6.4 14.8 1.8e+02 2.3 7.5 3.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Epimerase PF01370.21 gi|159041127|ref|YP_001540379.1| - 7.6e-52 176.2 0.1 1.1e-51 175.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159041127|ref|YP_001540379.1| - 2.1e-46 158.9 0.0 3.2e-46 158.3 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|159041127|ref|YP_001540379.1| - 2.7e-22 79.1 0.1 3.4e-22 78.8 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|159041127|ref|YP_001540379.1| - 2.4e-17 62.9 0.0 3.3e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|159041127|ref|YP_001540379.1| - 3.6e-15 55.9 0.0 1.6e-14 53.8 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|159041127|ref|YP_001540379.1| - 9.9e-10 38.6 0.0 1.5e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|159041127|ref|YP_001540379.1| - 1.7e-09 37.2 1.3 7.4e-07 28.6 1.3 2.8 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|159041127|ref|YP_001540379.1| - 3.6e-05 23.3 0.0 0.0015 18.0 0.0 2.4 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.13 gi|159041127|ref|YP_001540379.1| - 6e-05 22.7 0.1 0.0001 22.0 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family PHB_acc_N PF07879.11 gi|159041127|ref|YP_001540379.1| - 0.022 14.9 0.0 1.2 9.3 0.0 2.4 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain KR PF08659.10 gi|159041127|ref|YP_001540379.1| - 0.078 12.9 0.3 0.22 11.4 0.3 1.9 1 1 0 1 1 1 0 KR domain eIF-1a PF01176.19 gi|159041129|ref|YP_001540381.1| - 2.6e-20 72.0 0.5 3.7e-20 71.5 0.5 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Myosin_N PF02736.19 gi|159041129|ref|YP_001540381.1| - 0.071 13.0 3.2 0.18 11.6 2.0 2.2 2 1 0 2 2 2 0 Myosin N-terminal SH3-like domain DUF2757 PF10955.8 gi|159041129|ref|YP_001540381.1| - 0.19 12.0 0.0 0.51 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) Fer4_9 PF13187.6 gi|159041130|ref|YP_001540382.1| - 2.6e-12 46.7 29.1 2.7e-07 30.6 10.6 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159041130|ref|YP_001540382.1| - 9.4e-10 37.9 13.1 6.9e-06 25.7 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|159041130|ref|YP_001540382.1| - 3.1e-08 34.1 10.0 8e-08 32.8 10.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159041130|ref|YP_001540382.1| - 8.3e-08 31.9 10.5 0.0014 18.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041130|ref|YP_001540382.1| - 9.1e-08 32.1 10.5 6.3e-07 29.4 10.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159041130|ref|YP_001540382.1| - 9.1e-08 32.1 21.3 1.4e-05 25.1 11.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159041130|ref|YP_001540382.1| - 9.2e-08 31.9 11.7 0.00029 20.8 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|159041130|ref|YP_001540382.1| - 1.3e-05 26.0 11.3 0.0044 17.9 1.1 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|159041130|ref|YP_001540382.1| - 2.5e-05 24.6 11.4 0.0098 16.3 11.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159041130|ref|YP_001540382.1| - 6.3e-05 23.2 10.5 0.00077 19.8 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|159041130|ref|YP_001540382.1| - 0.00016 22.1 11.2 0.029 14.9 1.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159041130|ref|YP_001540382.1| - 0.00021 21.8 10.4 0.003 18.1 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|159041130|ref|YP_001540382.1| - 0.0013 19.5 12.3 0.0023 18.6 0.7 2.6 1 1 2 3 3 3 2 4Fe-4S single cluster domain DUF678 PF05077.12 gi|159041130|ref|YP_001540382.1| - 0.03 14.4 1.3 0.22 11.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_3 PF12798.7 gi|159041130|ref|YP_001540382.1| - 0.035 15.0 15.5 0.69 11.0 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|159041130|ref|YP_001540382.1| - 0.049 14.5 13.0 0.85 10.5 3.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|159041130|ref|YP_001540382.1| - 0.081 13.1 9.1 0.16 12.1 1.5 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4432 PF14486.6 gi|159041131|ref|YP_001540383.1| - 1.1e-07 31.0 0.1 3.4e-05 22.8 0.0 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4432) DUF5107 PF17128.4 gi|159041131|ref|YP_001540383.1| - 0.085 12.0 0.0 0.21 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5107) HTH_10 PF04967.12 gi|159041132|ref|YP_001540384.1| - 8.7e-16 57.5 0.0 1.5e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|159041132|ref|YP_001540384.1| - 0.00013 21.5 0.8 0.00022 20.7 0.4 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|159041132|ref|YP_001540384.1| - 0.00032 20.4 0.1 0.00062 19.5 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain SpoIIID PF12116.8 gi|159041132|ref|YP_001540384.1| - 0.00091 19.3 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 Stage III sporulation protein D MarR_2 PF12802.7 gi|159041132|ref|YP_001540384.1| - 0.00094 19.0 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|159041132|ref|YP_001540384.1| - 0.0014 18.5 0.2 0.0029 17.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|159041132|ref|YP_001540384.1| - 0.0038 17.1 0.0 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|159041132|ref|YP_001540384.1| - 0.0039 16.9 0.4 0.0079 15.9 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|159041132|ref|YP_001540384.1| - 0.0043 17.0 0.1 0.011 15.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|159041132|ref|YP_001540384.1| - 0.0098 15.7 0.1 0.019 14.8 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_AraC PF00165.23 gi|159041132|ref|YP_001540384.1| - 0.011 15.8 0.0 0.033 14.3 0.0 1.9 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Mga PF05043.13 gi|159041132|ref|YP_001540384.1| - 0.014 16.0 0.0 0.033 14.8 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_3 PF01381.22 gi|159041132|ref|YP_001540384.1| - 0.014 15.4 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_29 PF13551.6 gi|159041132|ref|YP_001540384.1| - 0.017 15.1 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_6 PF01418.17 gi|159041132|ref|YP_001540384.1| - 0.022 14.7 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_31 PF13560.6 gi|159041132|ref|YP_001540384.1| - 0.043 14.2 0.1 0.07 13.5 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|159041132|ref|YP_001540384.1| - 0.045 13.8 0.1 0.08 13.0 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_Tnp_1_2 PF13022.6 gi|159041132|ref|YP_001540384.1| - 0.045 13.9 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase GntR PF00392.21 gi|159041132|ref|YP_001540384.1| - 0.054 13.2 0.1 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family IF2_N PF04760.15 gi|159041132|ref|YP_001540384.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_26 PF13443.6 gi|159041132|ref|YP_001540384.1| - 0.066 13.7 0.1 0.13 12.7 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_psq PF05225.16 gi|159041132|ref|YP_001540384.1| - 0.073 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain TetR_N PF00440.23 gi|159041132|ref|YP_001540384.1| - 0.082 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_ISL3 PF13542.6 gi|159041132|ref|YP_001540384.1| - 0.11 12.0 0.0 0.29 10.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|159041132|ref|YP_001540384.1| - 0.12 12.1 0.2 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.7 gi|159041132|ref|YP_001540384.1| - 0.13 12.5 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_50 PF18024.1 gi|159041132|ref|YP_001540384.1| - 0.13 11.9 0.1 0.3 10.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SBP_bac_5 PF00496.22 gi|159041133|ref|YP_001540385.1| - 8.9e-23 80.9 6.6 1.7e-22 79.9 6.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041133|ref|YP_001540385.1| - 0.16 11.8 11.6 0.24 11.2 11.6 1.2 1 0 0 1 1 1 0 Rifin DUF5336 PF17270.2 gi|159041133|ref|YP_001540385.1| - 1.1 8.8 9.1 2.3 7.8 9.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5336) Peptidase_M20 PF01546.28 gi|159041134|ref|YP_001540386.1| - 9.2e-37 126.7 0.0 1.3e-36 126.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|159041134|ref|YP_001540386.1| - 9.1e-20 70.6 0.0 1.9e-19 69.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF3311 PF11755.8 gi|159041135|ref|YP_001540387.1| - 5.4e-11 42.3 7.1 7.1e-11 41.9 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4212 PF13937.6 gi|159041135|ref|YP_001540387.1| - 0.086 13.2 5.9 0.11 12.8 5.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) SSF PF00474.17 gi|159041136|ref|YP_001540388.1| - 1.3e-11 44.0 35.7 2.2e-10 40.0 35.7 2.3 1 1 0 1 1 1 1 Sodium:solute symporter family Herpes_US9 PF06072.11 gi|159041136|ref|YP_001540388.1| - 9.9 6.1 6.8 1.5 8.8 0.2 3.1 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 Acyl-CoA_dh_1 PF00441.24 gi|159041137|ref|YP_001540389.1| - 4.5e-35 121.1 1.2 6.4e-35 120.6 1.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|159041137|ref|YP_001540389.1| - 6.3e-20 71.9 0.0 1.7e-19 70.5 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|159041137|ref|YP_001540389.1| - 2.6e-14 53.6 0.3 4e-14 53.0 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|159041137|ref|YP_001540389.1| - 4.7e-13 49.1 0.0 9e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain SIS PF01380.22 gi|159041138|ref|YP_001540390.1| - 1.1e-33 115.8 0.1 8.2e-24 83.9 0.1 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|159041138|ref|YP_001540390.1| - 1.5e-16 60.8 0.0 3.1e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|159041138|ref|YP_001540390.1| - 1.5e-09 37.8 0.0 2.6e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|159041138|ref|YP_001540390.1| - 6.4e-05 22.0 0.0 0.00011 21.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|159041138|ref|YP_001540390.1| - 0.019 15.0 0.0 0.06 13.4 0.0 1.9 1 0 0 1 1 1 0 SIS domain SCF PF02404.15 gi|159041138|ref|YP_001540390.1| - 0.057 12.8 0.1 0.092 12.1 0.1 1.2 1 0 0 1 1 1 0 Stem cell factor DSPc PF00782.20 gi|159041139|ref|YP_001540391.1| - 1.1e-16 60.9 0.0 1.4e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.12 gi|159041139|ref|YP_001540391.1| - 1.2e-05 25.0 0.0 1.6e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.27 gi|159041139|ref|YP_001540391.1| - 7.2e-05 22.5 0.0 8.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|159041139|ref|YP_001540391.1| - 0.0031 17.6 0.0 0.0062 16.7 0.0 1.4 1 1 0 1 1 1 1 Inositol hexakisphosphate DUF434 PF04256.12 gi|159041139|ref|YP_001540391.1| - 0.054 13.2 0.1 0.091 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF434) UBA_3 PF09288.10 gi|159041139|ref|YP_001540391.1| - 0.054 13.3 0.0 0.13 12.0 0.0 1.7 1 1 0 1 1 1 0 Fungal ubiquitin-associated domain MJ1316 PF04457.12 gi|159041140|ref|YP_001540392.1| - 1.6e-10 41.6 0.0 1.9e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain TPR_19 PF14559.6 gi|159041141|ref|YP_001540393.1| - 0.0016 18.9 0.2 5.8 7.5 0.0 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|159041141|ref|YP_001540393.1| - 0.0067 17.2 0.5 18 6.5 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|159041141|ref|YP_001540393.1| - 0.0078 16.3 2.1 14 6.0 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|159041141|ref|YP_001540393.1| - 0.015 15.6 4.6 3.5 8.0 2.0 3.4 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|159041141|ref|YP_001540393.1| - 0.017 15.3 3.4 0.45 10.9 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|159041141|ref|YP_001540393.1| - 0.026 14.2 0.5 0.25 11.1 0.1 2.7 3 1 1 4 4 4 0 26S proteasome subunit RPN7 NTP_transferase PF00483.23 gi|159041142|ref|YP_001540394.1| - 3.3e-43 148.1 0.0 4.4e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|159041142|ref|YP_001540394.1| - 1.5e-17 62.5 9.6 3.1e-07 29.9 0.7 4.3 2 2 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|159041142|ref|YP_001540394.1| - 8.1e-08 32.8 0.0 1.6e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|159041142|ref|YP_001540394.1| - 0.049 13.4 12.4 0.26 11.1 0.4 4.3 3 2 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase PGG PF13962.6 gi|159041143|ref|YP_001540395.1| - 0.031 14.1 1.5 0.031 14.1 1.5 1.8 2 0 0 2 2 2 0 Domain of unknown function K_trans PF02705.16 gi|159041143|ref|YP_001540395.1| - 0.08 11.4 7.2 0.094 11.2 7.2 1.1 1 0 0 1 1 1 0 K+ potassium transporter DUF2207 PF09972.9 gi|159041143|ref|YP_001540395.1| - 5.9 5.5 8.9 6.6 5.4 8.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Pribosyltran PF00156.27 gi|159041144|ref|YP_001540396.1| - 3.7e-10 39.6 0.3 6.8e-10 38.7 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|159041144|ref|YP_001540396.1| - 0.0011 18.5 0.2 0.0026 17.2 0.2 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_3 PF01381.22 gi|159041144|ref|YP_001540396.1| - 0.026 14.6 0.1 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix PRTase_2 PF15609.6 gi|159041144|ref|YP_001540396.1| - 0.12 11.8 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase DHO_dh PF01180.21 gi|159041145|ref|YP_001540397.1| - 4.7e-33 114.7 0.0 7.4e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Pribosyltran PF00156.27 gi|159041146|ref|YP_001540398.1| - 7.6e-19 67.8 0.1 1.1e-18 67.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|159041146|ref|YP_001540398.1| - 0.00098 18.6 0.0 0.0013 18.3 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|159041146|ref|YP_001540398.1| - 0.0075 15.8 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase PyrI PF01948.18 gi|159041147|ref|YP_001540399.1| - 1.2e-32 112.0 1.9 2e-32 111.3 1.9 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|159041147|ref|YP_001540399.1| - 1e-14 54.1 0.2 1.7e-14 53.4 0.2 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PriA_CRR PF18319.1 gi|159041147|ref|YP_001540399.1| - 0.023 14.7 0.1 0.042 13.9 0.1 1.3 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Fer4 PF00037.27 gi|159041148|ref|YP_001540400.1| - 3.8e-12 45.5 14.5 4.3e-10 39.0 4.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|159041148|ref|YP_001540400.1| - 4.2e-12 46.4 20.4 7.4e-07 29.7 10.2 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159041148|ref|YP_001540400.1| - 9.6e-10 39.3 6.2 2.1e-05 25.3 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|159041148|ref|YP_001540400.1| - 1.3e-08 34.5 3.8 1.3e-08 34.5 3.8 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041148|ref|YP_001540400.1| - 6.7e-08 32.6 8.2 9.5e-08 32.1 8.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159041148|ref|YP_001540400.1| - 8.5e-08 32.2 6.4 8.5e-08 32.2 6.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159041148|ref|YP_001540400.1| - 1.4e-07 31.5 17.8 0.00013 22.0 8.9 1.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159041148|ref|YP_001540400.1| - 3.7e-07 29.8 3.1 3.7e-07 29.8 3.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|159041148|ref|YP_001540400.1| - 2.8e-05 24.8 8.9 0.00051 20.7 8.9 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|159041148|ref|YP_001540400.1| - 5e-05 23.5 2.6 5e-05 23.5 2.6 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|159041148|ref|YP_001540400.1| - 6.6e-05 23.4 10.6 0.0051 17.3 2.1 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|159041148|ref|YP_001540400.1| - 9.7e-05 23.0 15.2 0.00041 21.1 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|159041148|ref|YP_001540400.1| - 0.0017 18.9 10.3 0.037 14.6 10.3 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|159041148|ref|YP_001540400.1| - 0.0023 18.7 3.4 0.0095 16.8 0.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|159041148|ref|YP_001540400.1| - 0.0036 17.4 2.9 0.011 15.8 2.5 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain SLT_L PF14718.6 gi|159041148|ref|YP_001540400.1| - 0.0046 17.1 0.5 0.037 14.2 0.2 2.0 2 0 0 2 2 2 1 Soluble lytic murein transglycosylase L domain Fer4_8 PF13183.6 gi|159041148|ref|YP_001540400.1| - 0.0055 17.1 9.2 0.42 11.1 9.1 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|159041148|ref|YP_001540400.1| - 5.8 7.2 10.8 0.32 11.2 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain COXG PF06240.13 gi|159041150|ref|YP_001540402.1| - 1.4e-19 70.3 0.2 1.7e-19 70.0 0.2 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) HTH_24 PF13412.6 gi|159041151|ref|YP_001540403.1| - 9.2e-08 31.5 0.1 2.3e-07 30.2 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|159041151|ref|YP_001540403.1| - 0.0016 18.4 0.0 0.004 17.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|159041151|ref|YP_001540403.1| - 0.0019 18.0 0.0 0.0043 16.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Stevor PF17410.2 gi|159041151|ref|YP_001540403.1| - 0.027 14.0 10.1 0.041 13.4 10.1 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame HTH_20 PF12840.7 gi|159041151|ref|YP_001540403.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RIFIN PF02009.16 gi|159041151|ref|YP_001540403.1| - 0.68 9.8 11.1 1 9.2 11.1 1.2 1 0 0 1 1 1 0 Rifin MarR PF01047.22 gi|159041151|ref|YP_001540403.1| - 1.2 9.2 0.0 1.2 9.2 0.0 3.0 4 0 0 4 4 4 0 MarR family DUF4769 PF15992.5 gi|159041151|ref|YP_001540403.1| - 2.5 7.8 4.0 3.4 7.4 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4769) SMYLE_N PF18615.1 gi|159041151|ref|YP_001540403.1| - 4.6 6.7 6.4 5.7 6.4 6.4 1.1 1 0 0 1 1 1 0 Short myomegalin-like EB1 binding proteins, N-terminal domain Fer4_8 PF13183.6 gi|159041153|ref|YP_001540405.1| - 1.5e-09 38.2 2.8 1.5e-09 38.2 2.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.16 gi|159041153|ref|YP_001540405.1| - 3.6e-08 33.5 0.1 2.6e-07 30.7 0.1 2.4 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_17 PF13534.6 gi|159041153|ref|YP_001540405.1| - 1e-07 32.4 7.6 1.2e-07 32.2 4.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159041153|ref|YP_001540405.1| - 1.1e-07 31.9 4.1 1.1e-07 31.9 4.1 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041153|ref|YP_001540405.1| - 1.3e-05 25.7 8.2 1.3e-05 25.7 8.2 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159041153|ref|YP_001540405.1| - 1.5e-05 24.6 11.9 0.0067 16.2 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159041153|ref|YP_001540405.1| - 2.5e-05 24.3 22.3 0.0001 22.3 12.5 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|159041153|ref|YP_001540405.1| - 0.003 17.8 4.4 0.051 13.8 0.1 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159041153|ref|YP_001540405.1| - 0.022 15.7 17.0 0.11 13.5 14.0 2.9 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|159041153|ref|YP_001540405.1| - 0.034 14.2 3.1 0.034 14.2 3.1 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|159041153|ref|YP_001540405.1| - 0.035 15.0 4.0 0.035 15.0 4.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|159041153|ref|YP_001540405.1| - 0.09 12.6 4.9 0.32 10.8 0.1 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|159041153|ref|YP_001540405.1| - 0.23 11.6 11.8 1 9.6 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159041153|ref|YP_001540405.1| - 1 10.0 16.8 0.07 13.7 2.3 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain DUF326 PF03860.16 gi|159041153|ref|YP_001540405.1| - 1.5 8.9 12.5 1.4 9.0 0.6 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) RecQ_Zn_bind PF16124.5 gi|159041153|ref|YP_001540405.1| - 5.1 7.9 6.8 6.8 7.5 0.0 2.9 3 0 0 3 3 2 0 RecQ zinc-binding Nitrate_red_gam PF02665.14 gi|159041154|ref|YP_001540406.1| - 1.6e-10 40.9 7.7 3.1e-10 40.0 7.7 1.4 1 0 0 1 1 1 1 Nitrate reductase gamma subunit FtsX PF02687.21 gi|159041154|ref|YP_001540406.1| - 0.018 15.5 2.0 0.018 15.5 2.0 2.5 1 1 1 3 3 3 0 FtsX-like permease family UPF0547 PF10571.9 gi|159041155|ref|YP_001540407.1| - 0.0042 17.1 6.0 0.94 9.6 0.1 3.5 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.6 gi|159041155|ref|YP_001540407.1| - 0.035 14.5 0.9 4.7 7.8 0.0 2.6 2 0 0 2 2 2 0 Zinc-finger double domain Prok-RING_4 PF14447.6 gi|159041155|ref|YP_001540407.1| - 0.97 9.3 8.4 0.45 10.4 1.4 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 UPF0020 PF01170.18 gi|159041156|ref|YP_001540408.1| - 6.6e-09 35.7 0.0 7.9e-08 32.2 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|159041156|ref|YP_001540408.1| - 1.1e-07 31.5 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|159041156|ref|YP_001540408.1| - 2.7e-06 28.0 0.0 4.1e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041156|ref|YP_001540408.1| - 5.3e-06 26.3 0.0 6.4e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|159041156|ref|YP_001540408.1| - 3e-05 23.6 0.0 3.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|159041156|ref|YP_001540408.1| - 6e-05 22.8 0.0 7.3e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|159041156|ref|YP_001540408.1| - 0.0014 19.2 0.0 0.0025 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159041156|ref|YP_001540408.1| - 0.012 16.3 0.0 0.021 15.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain AviRa PF11599.8 gi|159041156|ref|YP_001540408.1| - 0.014 14.9 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Met_10 PF02475.16 gi|159041156|ref|YP_001540408.1| - 0.061 13.1 0.0 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|159041156|ref|YP_001540408.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase GalP_UDP_transf PF01087.22 gi|159041157|ref|YP_001540409.1| - 8.1e-19 68.8 0.0 6.3e-14 52.8 0.0 2.4 2 0 0 2 2 2 2 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|159041157|ref|YP_001540409.1| - 4.9e-17 62.2 0.1 7.5e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.8 gi|159041157|ref|YP_001540409.1| - 2.4e-06 28.0 0.2 5.3e-05 23.7 0.2 2.1 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|159041157|ref|YP_001540409.1| - 0.00011 22.9 0.1 0.0045 17.7 0.1 2.3 2 0 0 2 2 2 1 HIT domain DUF4931 PF16285.5 gi|159041157|ref|YP_001540409.1| - 0.019 14.3 0.0 0.071 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4931) CwfJ_C_1 PF04677.15 gi|159041157|ref|YP_001540409.1| - 0.041 13.7 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 Lambda_CIII PF02061.16 gi|159041157|ref|YP_001540409.1| - 0.058 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Lambda Phage CIII GHMP_kinases_C PF08544.13 gi|159041158|ref|YP_001540410.1| - 1.5e-15 57.3 0.5 1.1e-14 54.6 0.1 2.5 3 0 0 3 3 3 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|159041158|ref|YP_001540410.1| - 4.8e-15 55.5 0.4 4.8e-15 55.5 0.4 2.3 3 0 0 3 3 3 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|159041158|ref|YP_001540410.1| - 2.3e-09 36.6 0.0 4.6e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature PK PF00224.21 gi|159041159|ref|YP_001540411.1| - 2.3e-74 250.4 0.4 3e-74 250.0 0.4 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|159041159|ref|YP_001540411.1| - 1.4e-20 73.6 0.0 5.7e-20 71.7 0.0 2.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|159041159|ref|YP_001540411.1| - 0.096 11.8 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Fe_dep_repr_C PF02742.15 gi|159041160|ref|YP_001540412.1| - 5.7e-17 61.6 0.0 1.6e-16 60.1 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_IclR PF09339.10 gi|159041160|ref|YP_001540412.1| - 3e-05 23.7 0.0 5.6e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|159041160|ref|YP_001540412.1| - 4.4e-05 23.6 0.1 0.00011 22.3 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|159041160|ref|YP_001540412.1| - 4.7e-05 23.2 0.0 9.7e-05 22.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|159041160|ref|YP_001540412.1| - 0.00023 21.6 0.0 0.00093 19.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|159041160|ref|YP_001540412.1| - 0.00049 20.0 0.0 0.0017 18.2 0.0 1.8 2 0 0 2 2 2 1 MarR family RuvB_C PF05491.13 gi|159041160|ref|YP_001540412.1| - 0.00058 19.7 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain MarR_2 PF12802.7 gi|159041160|ref|YP_001540412.1| - 0.0042 16.9 0.0 0.0098 15.8 0.0 1.5 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|159041160|ref|YP_001540412.1| - 0.0047 16.7 0.0 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.6 gi|159041160|ref|YP_001540412.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_11 PF08279.12 gi|159041160|ref|YP_001540412.1| - 0.013 15.4 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 gi|159041160|ref|YP_001540412.1| - 0.014 15.0 0.0 0.036 13.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FeoC PF09012.10 gi|159041160|ref|YP_001540412.1| - 0.031 14.3 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator eIF-5_eIF-2B PF01873.17 gi|159041161|ref|YP_001540413.1| - 1.5e-31 108.7 0.0 1.8e-31 108.4 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|159041161|ref|YP_001540413.1| - 0.00062 19.2 1.1 0.0012 18.4 1.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|159041161|ref|YP_001540413.1| - 0.0017 18.7 0.3 0.0027 18.0 0.3 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RRN7 PF11781.8 gi|159041161|ref|YP_001540413.1| - 0.006 16.2 0.5 3.3 7.5 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|159041161|ref|YP_001540413.1| - 0.014 15.3 0.2 0.032 14.1 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|159041161|ref|YP_001540413.1| - 0.02 14.3 0.5 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|159041161|ref|YP_001540413.1| - 0.02 15.0 0.1 9.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|159041161|ref|YP_001540413.1| - 0.029 14.1 0.2 4.7 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain PhnA_Zn_Ribbon PF08274.12 gi|159041161|ref|YP_001540413.1| - 0.032 14.2 0.5 0.055 13.4 0.5 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Elf1 PF05129.13 gi|159041161|ref|YP_001540413.1| - 0.052 13.6 0.0 0.096 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|159041161|ref|YP_001540413.1| - 0.1 12.6 0.7 0.38 10.8 0.6 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|159041161|ref|YP_001540413.1| - 0.12 12.1 0.7 2.6 7.8 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|159041161|ref|YP_001540413.1| - 0.16 12.2 1.2 0.98 9.7 1.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 gi|159041161|ref|YP_001540413.1| - 0.3 11.0 2.3 3 7.8 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|159041161|ref|YP_001540413.1| - 0.81 9.7 3.4 4.5 7.3 3.4 2.1 1 1 0 1 1 1 0 Nudix N-terminal NicO PF03824.16 gi|159041162|ref|YP_001540414.1| - 0.00096 18.6 1.8 0.00096 18.6 1.8 2.6 1 1 1 2 2 2 1 High-affinity nickel-transport protein JAMP PF05571.12 gi|159041162|ref|YP_001540414.1| - 0.82 9.2 6.7 1.2 8.7 6.7 1.3 1 0 0 1 1 1 0 JNK1/MAPK8-associated membrane protein TusA PF01206.17 gi|159041163|ref|YP_001540415.1| - 1.5e-17 63.2 0.0 1.7e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF5348 PF17295.2 gi|159041163|ref|YP_001540415.1| - 0.038 13.9 0.0 0.047 13.6 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5348) Meth_synt_2 PF01717.18 gi|159041164|ref|YP_001540416.1| - 2.9e-31 108.9 0.0 1.8e-29 103.1 0.0 2.8 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|159041164|ref|YP_001540416.1| - 0.0012 18.5 0.1 0.38 10.2 0.0 3.0 3 0 0 3 3 3 2 Cobalamin-independent synthase, N-terminal domain OsmC PF02566.19 gi|159041165|ref|YP_001540417.1| - 3e-19 69.4 0.0 8.1e-19 68.0 0.0 1.6 2 0 0 2 2 2 1 OsmC-like protein Rhodanese PF00581.20 gi|159041166|ref|YP_001540418.1| - 2.8e-29 101.8 0.0 4.2e-14 53.0 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain Thioredox_DsbH PF03190.15 gi|159041167|ref|YP_001540419.1| - 7.2e-57 191.9 0.0 1.1e-56 191.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|159041167|ref|YP_001540419.1| - 1.7e-13 50.6 0.0 3e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|159041167|ref|YP_001540419.1| - 0.004 17.6 0.0 0.0081 16.6 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain C5-epim_C PF06662.13 gi|159041167|ref|YP_001540419.1| - 0.097 12.2 0.1 1.5 8.3 0.0 2.3 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Thioredoxin PF00085.20 gi|159041167|ref|YP_001540419.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin TENA_THI-4 PF03070.16 gi|159041168|ref|YP_001540420.1| - 2.9e-45 154.7 0.3 4e-45 154.2 0.3 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family zf-C2H2_9 PF16293.5 gi|159041168|ref|YP_001540420.1| - 1.1e-27 95.6 0.8 2.2e-27 94.7 0.8 1.5 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) Haem_oxygenas_2 PF14518.6 gi|159041168|ref|YP_001540420.1| - 7.2e-22 78.0 2.7 1.3e-21 77.2 2.7 1.4 1 0 0 1 1 1 1 Iron-containing redox enzyme zf-met PF12874.7 gi|159041168|ref|YP_001540420.1| - 0.0069 16.7 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-finger of C2H2 type Ta0938 PF11494.8 gi|159041169|ref|YP_001540421.1| - 5.9e-56 187.2 4.7 6.5e-56 187.1 4.7 1.0 1 0 0 1 1 1 1 Ta0938 zf-H2C2_2 PF13465.6 gi|159041169|ref|YP_001540421.1| - 0.01 16.3 0.8 0.01 16.3 0.8 1.7 2 0 0 2 2 2 0 Zinc-finger double domain ThiS-like PF14453.6 gi|159041169|ref|YP_001540421.1| - 0.081 13.0 0.2 12 6.0 0.0 2.5 3 0 0 3 3 3 0 ThiS-like ubiquitin Metallothio_Pro PF02069.16 gi|159041169|ref|YP_001540421.1| - 0.13 12.5 2.3 0.29 11.4 2.1 1.6 1 1 0 1 1 1 0 Prokaryotic metallothionein YHS PF04945.13 gi|159041169|ref|YP_001540421.1| - 0.25 11.5 2.3 0.57 10.3 2.3 1.6 1 0 0 1 1 1 0 YHS domain Rhodanese PF00581.20 gi|159041170|ref|YP_001540422.1| - 7.3e-39 132.6 0.1 2.2e-20 73.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Urm1 PF09138.11 gi|159041171|ref|YP_001540423.1| - 0.025 14.9 0.1 0.029 14.7 0.1 1.3 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Peptidase_M22 PF00814.25 gi|159041172|ref|YP_001540424.1| - 4e-83 279.2 0.2 4.9e-83 278.9 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|159041173|ref|YP_001540425.1| - 1.7e-10 40.8 1.2 2.2e-10 40.5 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.11 gi|159041173|ref|YP_001540425.1| - 0.00033 20.5 0.3 0.0004 20.2 0.3 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|159041173|ref|YP_001540425.1| - 0.0011 18.9 4.0 0.0015 18.4 4.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|159041173|ref|YP_001540425.1| - 0.0063 16.6 0.7 0.0087 16.2 0.7 1.2 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) GFA PF04828.14 gi|159041173|ref|YP_001540425.1| - 0.0067 16.7 1.1 1.4 9.3 0.1 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 gi|159041173|ref|YP_001540425.1| - 0.0083 16.3 1.3 0.0083 16.3 1.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L37e PriA_CRR PF18319.1 gi|159041173|ref|YP_001540425.1| - 0.012 15.6 2.2 0.048 13.7 2.2 2.0 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zf-NADH-PPase PF09297.11 gi|159041173|ref|YP_001540425.1| - 0.014 15.0 3.4 0.19 11.4 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|159041173|ref|YP_001540425.1| - 0.018 14.6 0.1 0.56 9.8 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|159041173|ref|YP_001540425.1| - 0.023 14.5 0.3 0.043 13.7 0.3 1.4 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Ribosomal_L37ae PF01780.19 gi|159041173|ref|YP_001540425.1| - 0.028 14.5 0.9 0.035 14.2 0.9 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf_UBZ PF18439.1 gi|159041173|ref|YP_001540425.1| - 0.03 13.9 0.7 0.85 9.3 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|159041173|ref|YP_001540425.1| - 0.04 13.9 0.8 5.2 7.1 0.1 2.2 1 1 1 2 2 2 0 YhfH-like protein Lar_restr_allev PF14354.6 gi|159041173|ref|YP_001540425.1| - 0.046 14.1 1.0 0.077 13.4 1.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|159041173|ref|YP_001540425.1| - 0.049 13.4 2.5 2.7 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|159041173|ref|YP_001540425.1| - 0.054 13.4 3.3 0.17 11.8 3.3 1.8 1 1 0 1 1 1 0 Nudix N-terminal TackOD1 PF18551.1 gi|159041173|ref|YP_001540425.1| - 0.091 12.4 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 HalOD2 PF18547.1 gi|159041173|ref|YP_001540425.1| - 0.096 12.6 2.5 0.65 10.0 0.3 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 Zn_ribbon_recom PF13408.6 gi|159041173|ref|YP_001540425.1| - 0.2 12.2 4.3 0.69 10.5 4.3 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.6 gi|159041173|ref|YP_001540425.1| - 0.2 12.4 6.9 0.28 11.9 0.5 2.4 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_C2H2_10 PF18414.1 gi|159041173|ref|YP_001540425.1| - 0.29 10.7 1.5 7.2 6.2 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-ribbon_3 PF13248.6 gi|159041173|ref|YP_001540425.1| - 0.42 10.1 5.1 1.7 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|159041173|ref|YP_001540425.1| - 1.4 8.9 5.8 21 5.2 0.6 2.1 1 1 1 2 2 2 0 Adenylate kinase, active site lid PhoU PF01895.19 gi|159041174|ref|YP_001540426.1| - 7.2e-21 74.5 5.9 6.1e-15 55.4 0.8 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|159041174|ref|YP_001540426.1| - 2.6e-06 27.2 0.0 8.9e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TOBE PF03459.17 gi|159041174|ref|YP_001540426.1| - 0.036 14.4 0.0 0.28 11.5 0.0 2.4 2 0 0 2 2 2 0 TOBE domain PhoH PF02562.16 gi|159041175|ref|YP_001540427.1| - 1.2e-47 162.0 0.0 1.6e-47 161.6 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|159041175|ref|YP_001540427.1| - 2.6e-06 27.1 0.4 8.7e-06 25.5 0.2 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|159041175|ref|YP_001540427.1| - 6.1e-05 22.8 0.5 0.0012 18.6 0.1 2.7 3 0 0 3 3 3 1 KH domain KH_5 PF13184.6 gi|159041175|ref|YP_001540427.1| - 0.00083 19.4 0.1 0.066 13.3 0.1 2.5 2 0 0 2 2 2 1 NusA-like KH domain AAA_30 PF13604.6 gi|159041175|ref|YP_001540427.1| - 0.0041 16.8 0.0 0.034 13.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|159041175|ref|YP_001540427.1| - 0.075 12.8 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|159041175|ref|YP_001540427.1| - 0.079 13.2 0.6 0.8 10.0 0.6 2.3 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|159041175|ref|YP_001540427.1| - 0.096 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase KH_4 PF13083.6 gi|159041175|ref|YP_001540427.1| - 0.11 12.3 0.2 0.25 11.2 0.2 1.6 1 0 0 1 1 1 0 KH domain CBS PF00571.28 gi|159041176|ref|YP_001540428.1| - 1.6e-25 89.3 4.0 1.1e-12 48.2 0.6 2.3 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|159041176|ref|YP_001540428.1| - 0.13 12.6 2.5 2.9 8.2 0.2 2.9 2 2 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain DUF350 PF03994.14 gi|159041176|ref|YP_001540428.1| - 0.17 12.1 0.1 7.9 6.7 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) Ribosomal_S13_N PF08069.12 gi|159041177|ref|YP_001540429.1| - 7.1e-24 83.6 0.1 1.9e-23 82.2 0.0 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|159041177|ref|YP_001540429.1| - 6.2e-16 58.4 0.0 8.9e-16 57.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 GAGA PF09237.11 gi|159041177|ref|YP_001540429.1| - 0.14 12.0 0.9 0.33 10.8 0.4 1.8 2 0 0 2 2 2 0 GAGA factor MFS_5 PF05631.14 gi|159041177|ref|YP_001540429.1| - 0.14 11.0 0.0 0.15 10.9 0.0 1.0 1 0 0 1 1 1 0 Sugar-tranasporters, 12 TM RecX PF02631.16 gi|159041177|ref|YP_001540429.1| - 0.17 12.3 0.0 3.3 8.2 0.0 2.1 2 0 0 2 2 2 0 RecX family Aldo_ket_red PF00248.21 gi|159041178|ref|YP_001540430.1| - 6.2e-67 225.9 0.0 7e-67 225.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MerR_1 PF13411.6 gi|159041178|ref|YP_001540430.1| - 0.059 13.5 2.0 32 4.7 0.0 3.8 3 1 1 4 4 4 0 MerR HTH family regulatory protein SBP_bac_5 PF00496.22 gi|159041179|ref|YP_001540431.1| - 9e-27 94.0 10.4 2.1e-26 92.8 10.4 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041179|ref|YP_001540431.1| - 0.017 15.1 5.6 0.024 14.6 5.6 1.2 1 0 0 1 1 1 0 Rifin MGC-24 PF05283.11 gi|159041179|ref|YP_001540431.1| - 8.2 6.9 18.4 17 5.8 18.4 1.5 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Regulator_TrmB PF11495.8 gi|159041180|ref|YP_001540432.1| - 1.7e-59 200.9 0.0 2.8e-59 200.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|159041180|ref|YP_001540432.1| - 4.8e-16 58.4 0.1 1.4e-15 56.9 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|159041180|ref|YP_001540432.1| - 0.00032 20.6 0.0 0.00068 19.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|159041180|ref|YP_001540432.1| - 0.012 16.1 0.0 0.028 14.9 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|159041180|ref|YP_001540432.1| - 0.013 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|159041180|ref|YP_001540432.1| - 0.015 15.2 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|159041180|ref|YP_001540432.1| - 0.015 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|159041180|ref|YP_001540432.1| - 0.033 14.5 0.0 0.09 13.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.11 gi|159041180|ref|YP_001540432.1| - 0.078 13.1 0.0 0.25 11.5 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Alpha-mann_mid PF09261.11 gi|159041181|ref|YP_001540433.1| - 1.5e-05 25.1 0.0 2.7e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|159041181|ref|YP_001540433.1| - 0.00036 20.6 0.1 0.0019 18.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_38C PF07748.13 gi|159041181|ref|YP_001540433.1| - 0.0028 17.7 0.1 0.0096 16.0 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Glyco_hydro_38N PF01074.22 gi|159041181|ref|YP_001540433.1| - 0.0083 15.5 0.0 0.02 14.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain MFS_1 PF07690.16 gi|159041182|ref|YP_001540434.1| - 7.1e-32 110.7 68.4 2e-19 69.7 35.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2530 PF10745.9 gi|159041182|ref|YP_001540434.1| - 0.12 12.6 1.9 0.22 11.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) OATP PF03137.20 gi|159041182|ref|YP_001540434.1| - 0.36 9.1 20.8 0.25 9.6 3.6 3.5 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family DUF3834 PF12916.7 gi|159041183|ref|YP_001540435.1| - 4.5e-82 274.2 0.0 5.4e-82 273.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) KASH_CCD PF14662.6 gi|159041184|ref|YP_001540436.1| - 5e-09 36.3 37.3 4.9e-07 29.8 23.5 2.9 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH HAP1_N PF04849.13 gi|159041184|ref|YP_001540436.1| - 2.1e-06 27.2 33.9 0.00014 21.2 20.7 2.3 1 1 1 2 2 2 2 HAP1 N-terminal conserved region APG6_N PF17675.1 gi|159041184|ref|YP_001540436.1| - 2.3e-06 28.2 44.2 6.8e-05 23.4 10.6 3.5 1 1 2 3 3 3 1 Apg6 coiled-coil region Baculo_PEP_C PF04513.12 gi|159041184|ref|YP_001540436.1| - 5.7e-06 26.4 12.3 0.00013 22.0 8.6 2.5 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Lebercilin PF15619.6 gi|159041184|ref|YP_001540436.1| - 1.7e-05 24.6 32.5 0.0053 16.4 14.3 2.3 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease Spc7 PF08317.11 gi|159041184|ref|YP_001540436.1| - 2e-05 23.6 32.8 0.0025 16.7 14.3 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein Sec34 PF04136.15 gi|159041184|ref|YP_001540436.1| - 6.4e-05 22.9 16.9 0.041 13.8 2.9 3.3 1 1 1 3 3 3 2 Sec34-like family ZapB PF06005.12 gi|159041184|ref|YP_001540436.1| - 9.6e-05 22.7 52.5 0.023 15.2 12.0 5.0 2 1 3 5 5 5 2 Cell division protein ZapB YabA PF06156.13 gi|159041184|ref|YP_001540436.1| - 0.00015 22.3 29.1 0.027 15.1 6.0 3.7 1 1 2 3 3 3 2 Initiation control protein YabA DUF1664 PF07889.12 gi|159041184|ref|YP_001540436.1| - 0.00019 21.4 21.8 0.00077 19.5 6.1 3.3 2 1 2 4 4 3 2 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|159041184|ref|YP_001540436.1| - 0.00021 21.5 34.6 0.036 14.3 10.9 3.5 1 1 3 4 4 4 3 Seryl-tRNA synthetase N-terminal domain Snapin_Pallidin PF14712.6 gi|159041184|ref|YP_001540436.1| - 0.00033 21.0 28.3 0.067 13.6 6.0 5.3 1 1 4 6 6 6 3 Snapin/Pallidin DUF2205 PF10224.9 gi|159041184|ref|YP_001540436.1| - 0.00045 20.1 29.2 0.0071 16.3 3.0 5.5 2 1 4 6 6 5 1 Short coiled-coil protein DUF948 PF06103.11 gi|159041184|ref|YP_001540436.1| - 0.00049 20.3 13.5 0.28 11.4 0.5 3.5 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF948) DUF16 PF01519.16 gi|159041184|ref|YP_001540436.1| - 0.00065 20.2 29.5 1.3 9.6 6.8 4.9 2 1 2 4 4 4 1 Protein of unknown function DUF16 DUF4763 PF15960.5 gi|159041184|ref|YP_001540436.1| - 0.00066 19.1 24.2 0.087 12.1 7.3 3.1 1 1 2 3 3 3 2 Domain of unknown function (DUF4763) LPP PF04728.13 gi|159041184|ref|YP_001540436.1| - 0.00096 19.5 16.5 0.027 14.9 0.6 5.6 1 1 6 7 7 7 1 Lipoprotein leucine-zipper FUSC PF04632.12 gi|159041184|ref|YP_001540436.1| - 0.0011 17.6 5.0 0.0015 17.2 5.0 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family Rab5-bind PF09311.11 gi|159041184|ref|YP_001540436.1| - 0.0012 18.4 14.9 0.0012 18.4 14.9 2.2 1 1 1 2 2 2 1 Rabaptin-like protein Nup88 PF10168.9 gi|159041184|ref|YP_001540436.1| - 0.0015 16.4 29.6 0.0059 14.5 19.8 2.0 1 1 1 2 2 2 2 Nuclear pore component FapA PF03961.13 gi|159041184|ref|YP_001540436.1| - 0.0018 16.9 28.3 0.04 12.5 8.1 2.9 1 1 2 3 3 3 2 Flagellar Assembly Protein A SKA2 PF16740.5 gi|159041184|ref|YP_001540436.1| - 0.0021 17.8 22.6 0.52 10.1 3.4 4.6 1 1 3 4 4 4 1 Spindle and kinetochore-associated protein 2 Mod_r PF07200.13 gi|159041184|ref|YP_001540436.1| - 0.0025 17.9 30.6 0.11 12.6 12.1 2.6 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein TMF_DNA_bd PF12329.8 gi|159041184|ref|YP_001540436.1| - 0.0026 17.7 37.6 0.044 13.8 8.7 3.9 1 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding TMPIT PF07851.13 gi|159041184|ref|YP_001540436.1| - 0.0038 16.5 24.5 0.13 11.5 5.6 3.0 1 1 2 3 3 3 2 TMPIT-like protein zf-C4H2 PF10146.9 gi|159041184|ref|YP_001540436.1| - 0.0043 17.4 26.0 0.14 12.4 9.9 2.5 1 1 1 2 2 2 2 Zinc finger-containing protein Uso1_p115_C PF04871.13 gi|159041184|ref|YP_001540436.1| - 0.0048 17.3 32.1 0.82 10.0 8.3 3.3 1 1 1 2 2 2 1 Uso1 / p115 like vesicle tethering protein, C terminal region TelA PF05816.11 gi|159041184|ref|YP_001540436.1| - 0.0064 15.6 22.3 0.041 12.9 6.1 2.9 1 1 1 2 2 2 1 Toxic anion resistance protein (TelA) HOOK PF05622.12 gi|159041184|ref|YP_001540436.1| - 0.0077 14.4 29.5 0.013 13.7 29.5 1.3 1 0 0 1 1 1 1 HOOK protein GAS PF13851.6 gi|159041184|ref|YP_001540436.1| - 0.0079 15.6 38.1 0.083 12.2 17.1 2.3 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 gi|159041184|ref|YP_001540436.1| - 0.0089 16.2 32.1 0.23 11.7 10.5 3.4 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding DUF724 PF05266.14 gi|159041184|ref|YP_001540436.1| - 0.0095 15.8 26.0 0.0098 15.7 8.5 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF724) DUF4618 PF15397.6 gi|159041184|ref|YP_001540436.1| - 0.0097 15.4 28.9 0.14 11.6 28.7 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) COG6 PF06419.11 gi|159041184|ref|YP_001540436.1| - 0.011 14.0 22.4 0.17 10.1 2.0 3.0 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF2353 PF09789.9 gi|159041184|ref|YP_001540436.1| - 0.012 15.0 25.0 0.32 10.3 16.7 2.3 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) BLOC1_2 PF10046.9 gi|159041184|ref|YP_001540436.1| - 0.014 15.7 24.1 0.32 11.3 8.5 3.6 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.9 gi|159041184|ref|YP_001540436.1| - 0.016 15.2 35.7 0.42 10.6 27.2 2.6 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 UPF0242 PF06785.11 gi|159041184|ref|YP_001540436.1| - 0.02 15.0 34.6 0.88 9.7 15.3 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Prominin PF05478.11 gi|159041184|ref|YP_001540436.1| - 0.021 12.8 20.8 0.19 9.6 8.1 2.4 1 1 1 2 2 2 0 Prominin bZIP_1 PF00170.21 gi|159041184|ref|YP_001540436.1| - 0.022 14.9 35.2 0.31 11.2 3.2 5.3 1 1 3 4 4 4 0 bZIP transcription factor EMP24_GP25L PF01105.24 gi|159041184|ref|YP_001540436.1| - 0.025 14.5 24.1 0.45 10.4 3.2 4.2 1 1 3 4 4 4 0 emp24/gp25L/p24 family/GOLD DivIC PF04977.15 gi|159041184|ref|YP_001540436.1| - 0.031 14.1 39.4 0.37 10.6 5.0 5.3 1 1 4 5 5 5 0 Septum formation initiator Latarcin PF10279.9 gi|159041184|ref|YP_001540436.1| - 0.037 14.4 30.2 0.51 10.8 5.0 4.3 1 1 2 3 3 3 0 Latarcin precursor EzrA PF06160.12 gi|159041184|ref|YP_001540436.1| - 0.038 12.2 32.2 0.51 8.5 6.4 4.0 1 1 3 4 4 4 0 Septation ring formation regulator, EzrA JAKMIP_CC3 PF16034.5 gi|159041184|ref|YP_001540436.1| - 0.038 13.9 39.5 24 4.8 7.7 3.4 1 1 1 2 2 2 0 JAKMIP CC3 domain Noelin-1 PF12308.8 gi|159041184|ref|YP_001540436.1| - 0.039 13.9 1.5 0.039 13.9 1.5 3.0 2 2 2 4 4 4 0 Neurogenesis glycoprotein Syntaxin_2 PF14523.6 gi|159041184|ref|YP_001540436.1| - 0.043 14.2 18.7 1.6 9.2 3.0 3.5 2 1 1 3 3 2 0 Syntaxin-like protein DUF2968 PF11180.8 gi|159041184|ref|YP_001540436.1| - 0.058 13.0 30.1 0.046 13.4 3.5 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) DUF4709 PF15821.5 gi|159041184|ref|YP_001540436.1| - 0.065 13.5 16.2 0.28 11.5 4.9 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4709) DUF3584 PF12128.8 gi|159041184|ref|YP_001540436.1| - 0.075 10.5 30.3 0.086 10.4 22.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|159041184|ref|YP_001540436.1| - 0.078 11.6 28.6 0.036 12.7 10.6 2.2 1 1 1 2 2 2 0 AAA domain CENP-H PF05837.12 gi|159041184|ref|YP_001540436.1| - 0.078 13.4 33.6 1.1 9.7 7.8 3.2 1 1 2 3 3 3 0 Centromere protein H (CENP-H) COG5 PF10392.9 gi|159041184|ref|YP_001540436.1| - 0.079 13.1 10.1 0.16 12.1 2.8 3.3 1 1 3 4 4 4 0 Golgi transport complex subunit 5 HsbA PF12296.8 gi|159041184|ref|YP_001540436.1| - 0.082 13.3 1.0 0.24 11.8 1.0 1.8 1 1 0 1 1 1 0 Hydrophobic surface binding protein A LOH1CR12 PF10158.9 gi|159041184|ref|YP_001540436.1| - 0.083 12.9 10.4 6.2 6.9 0.4 3.8 1 1 4 5 5 5 0 Tumour suppressor protein Cauli_AT PF03233.13 gi|159041184|ref|YP_001540436.1| - 0.098 12.6 19.5 0.12 12.3 4.5 3.2 1 1 2 3 3 3 0 Aphid transmission protein Taxilin PF09728.9 gi|159041184|ref|YP_001540436.1| - 0.1 11.7 32.8 1.3 8.2 24.3 2.3 1 1 1 2 2 2 0 Myosin-like coiled-coil protein JIP_LZII PF16471.5 gi|159041184|ref|YP_001540436.1| - 0.12 12.6 35.8 0.23 11.7 5.2 5.1 2 1 2 5 5 4 0 JNK-interacting protein leucine zipper II SHE3 PF17078.5 gi|159041184|ref|YP_001540436.1| - 0.12 12.1 21.5 0.34 10.6 21.5 1.7 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 AATF-Che1 PF13339.6 gi|159041184|ref|YP_001540436.1| - 0.13 13.0 20.4 1.2e+03 0.1 20.3 3.1 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor LXG PF04740.12 gi|159041184|ref|YP_001540436.1| - 0.13 12.0 14.0 0.47 10.1 5.5 2.6 1 1 1 2 2 2 0 LXG domain of WXG superfamily TolA_bind_tri PF16331.5 gi|159041184|ref|YP_001540436.1| - 0.13 12.4 23.8 0.69 10.0 11.4 4.0 1 1 0 2 2 2 0 TolA binding protein trimerisation Filament PF00038.21 gi|159041184|ref|YP_001540436.1| - 0.13 11.8 29.1 0.24 11.0 27.8 1.9 1 1 0 1 1 1 0 Intermediate filament protein NPV_P10 PF05531.12 gi|159041184|ref|YP_001540436.1| - 0.14 12.7 15.1 29 5.2 11.5 4.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Laminin_I PF06008.14 gi|159041184|ref|YP_001540436.1| - 0.14 11.8 30.4 0.36 10.5 30.4 1.7 1 1 0 1 1 1 0 Laminin Domain I DUF812 PF05667.11 gi|159041184|ref|YP_001540436.1| - 0.14 11.0 31.0 0.26 10.1 31.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF812) CCDC158 PF15921.5 gi|159041184|ref|YP_001540436.1| - 0.15 9.9 21.5 0.2 9.4 4.5 2.2 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 158 ADIP PF11559.8 gi|159041184|ref|YP_001540436.1| - 0.2 11.8 30.7 0.047 13.8 15.4 2.8 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding Prefoldin_2 PF01920.20 gi|159041184|ref|YP_001540436.1| - 0.2 11.7 36.6 0.42 10.6 5.9 4.9 1 1 4 5 5 5 0 Prefoldin subunit DUF4795 PF16043.5 gi|159041184|ref|YP_001540436.1| - 0.21 11.2 30.1 3.9 7.0 30.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) ATG16 PF08614.11 gi|159041184|ref|YP_001540436.1| - 0.23 11.7 36.5 0.4 10.9 32.5 2.4 2 1 0 2 2 1 0 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.13 gi|159041184|ref|YP_001540436.1| - 0.23 12.2 15.5 1.4 9.7 1.9 3.7 1 1 4 5 5 5 0 Occludin homology domain DUF3450 PF11932.8 gi|159041184|ref|YP_001540436.1| - 0.23 10.7 33.3 0.024 13.9 11.4 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) FlxA PF14282.6 gi|159041184|ref|YP_001540436.1| - 0.29 11.1 29.6 0.26 11.3 15.2 3.4 1 1 3 4 4 4 0 FlxA-like protein V_ATPase_I PF01496.19 gi|159041184|ref|YP_001540436.1| - 0.31 8.9 19.7 0.32 8.9 5.0 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CASP_C PF08172.12 gi|159041184|ref|YP_001540436.1| - 0.34 10.2 22.3 0.94 8.8 3.8 3.8 1 1 4 5 5 5 0 CASP C terminal YojJ PF10372.9 gi|159041184|ref|YP_001540436.1| - 0.38 10.9 8.2 2.2 8.4 0.7 3.3 1 1 1 3 3 2 0 Bacterial membrane-spanning protein N-terminus Golgin_A5 PF09787.9 gi|159041184|ref|YP_001540436.1| - 0.38 10.2 32.0 0.64 9.4 16.2 2.1 1 1 1 2 2 2 0 Golgin subfamily A member 5 BRE1 PF08647.11 gi|159041184|ref|YP_001540436.1| - 0.46 10.6 29.9 0.045 13.8 10.2 3.3 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase DUF4164 PF13747.6 gi|159041184|ref|YP_001540436.1| - 0.49 10.7 23.7 2.1 8.7 4.2 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) Macoilin PF09726.9 gi|159041184|ref|YP_001540436.1| - 0.53 8.8 23.4 1.3 7.5 23.6 1.6 2 0 0 2 2 1 0 Macoilin family HMMR_C PF15908.5 gi|159041184|ref|YP_001540436.1| - 0.55 10.5 28.0 1.5 9.1 22.9 2.8 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor C-terminal DUF3209 PF11483.8 gi|159041184|ref|YP_001540436.1| - 0.57 10.7 6.3 0.67 10.4 0.9 3.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3209) DUF4686 PF15742.5 gi|159041184|ref|YP_001540436.1| - 0.62 9.1 37.8 4.7 6.2 37.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4686) DUF4407 PF14362.6 gi|159041184|ref|YP_001540436.1| - 0.63 9.3 17.9 4 6.7 17.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) ERM PF00769.19 gi|159041184|ref|YP_001540436.1| - 0.67 9.7 38.1 0.4 10.5 17.0 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family YkyA PF10368.9 gi|159041184|ref|YP_001540436.1| - 0.7 9.5 25.5 0.03 14.0 8.3 2.3 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein DUF1394 PF07159.12 gi|159041184|ref|YP_001540436.1| - 0.78 8.9 17.4 0.82 8.9 4.8 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1394) Phage_GPO PF05929.11 gi|159041184|ref|YP_001540436.1| - 1.1 8.8 18.1 0.79 9.3 7.1 2.2 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase FlaC_arch PF05377.11 gi|159041184|ref|YP_001540436.1| - 1.1 9.7 22.5 3 8.3 0.8 5.4 2 2 4 7 7 4 0 Flagella accessory protein C (FlaC) Jnk-SapK_ap_N PF09744.9 gi|159041184|ref|YP_001540436.1| - 1.5 9.0 35.6 0.29 11.3 19.7 2.7 1 1 1 2 2 1 0 JNK_SAPK-associated protein-1 COG2 PF06148.11 gi|159041184|ref|YP_001540436.1| - 1.8 8.6 24.4 1.5 8.9 3.0 4.6 1 1 4 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 TSNAXIP1_N PF15739.5 gi|159041184|ref|YP_001540436.1| - 1.8 8.9 26.1 5.5 7.4 3.1 3.5 1 1 2 3 3 3 0 Translin-associated factor X-interacting N-terminus MAD PF05557.13 gi|159041184|ref|YP_001540436.1| - 1.9 6.7 34.5 2.2 6.6 12.9 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein GIT_CC PF16559.5 gi|159041184|ref|YP_001540436.1| - 2 8.4 27.0 1.2 9.1 5.9 5.7 1 1 6 7 7 7 0 GIT coiled-coil Rho guanine nucleotide exchange factor CALCOCO1 PF07888.11 gi|159041184|ref|YP_001540436.1| - 2.1 7.2 33.0 2.9 6.7 31.3 1.7 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Lectin_N PF03954.14 gi|159041184|ref|YP_001540436.1| - 2.3 8.0 12.2 3.6 7.3 3.3 2.8 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain Fib_alpha PF08702.10 gi|159041184|ref|YP_001540436.1| - 2.6 8.2 20.6 2.6 8.2 8.2 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Cytochrom_B562 PF07361.11 gi|159041184|ref|YP_001540436.1| - 2.7 8.7 11.7 8.8 7.0 3.9 3.4 1 1 2 3 3 3 0 Cytochrome b562 Carbpep_Y_N PF05388.11 gi|159041184|ref|YP_001540436.1| - 2.8 8.5 29.1 0.65 10.6 2.9 4.8 1 1 2 3 3 2 0 Carboxypeptidase Y pro-peptide Cep57_CLD_2 PF14197.6 gi|159041184|ref|YP_001540436.1| - 3 8.0 27.7 0.16 12.1 5.9 4.3 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 USP8_interact PF08941.10 gi|159041184|ref|YP_001540436.1| - 3 7.6 24.5 3.3 7.5 4.0 3.2 1 1 1 2 2 2 0 USP8 interacting Serine_rich PF08824.10 gi|159041184|ref|YP_001540436.1| - 3.4 7.7 19.2 0.79 9.7 10.5 2.7 1 1 1 2 2 2 0 Serine rich protein interaction domain Laminin_II PF06009.12 gi|159041184|ref|YP_001540436.1| - 3.6 7.6 25.4 0.22 11.5 7.3 3.5 1 1 2 3 3 3 0 Laminin Domain II Tweety PF04906.13 gi|159041184|ref|YP_001540436.1| - 3.6 6.1 15.5 1.9 7.1 5.9 2.4 1 1 2 3 3 3 0 Tweety Bacillus_HBL PF05791.11 gi|159041184|ref|YP_001540436.1| - 4.5 7.0 16.1 1.9 8.3 7.7 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) PTRF_SDPR PF15237.6 gi|159041184|ref|YP_001540436.1| - 4.5 6.8 23.6 0.14 11.8 9.4 2.9 1 1 2 3 3 3 0 PTRF/SDPR family DUF4201 PF13870.6 gi|159041184|ref|YP_001540436.1| - 4.7 6.9 27.8 56 3.4 6.9 3.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) Spectrin PF00435.21 gi|159041184|ref|YP_001540436.1| - 5 7.7 36.4 0.55 10.7 12.0 3.9 1 1 3 4 4 3 0 Spectrin repeat HAUS-augmin3 PF14932.6 gi|159041184|ref|YP_001540436.1| - 5.3 6.5 31.3 3.5 7.1 19.7 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 E2F_CC-MB PF16421.5 gi|159041184|ref|YP_001540436.1| - 6.7 7.1 19.8 13 6.3 1.3 3.6 1 1 2 3 3 3 0 E2F transcription factor CC-MB domain DUF1319 PF07028.11 gi|159041184|ref|YP_001540436.1| - 7.5 6.8 17.9 1.2e+02 2.9 10.8 4.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) DUF2935 PF11155.8 gi|159041184|ref|YP_001540436.1| - 8.3 6.8 11.7 70 3.8 0.6 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) SKA1 PF07160.12 gi|159041184|ref|YP_001540436.1| - 8.3 6.2 21.8 14 5.4 8.8 3.1 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 GDPD PF03009.17 gi|159041185|ref|YP_001540437.1| - 6.1e-48 163.8 0.2 7.8e-48 163.4 0.2 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|159041185|ref|YP_001540437.1| - 1.3e-06 28.6 0.2 0.00014 22.2 0.5 2.6 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|159041185|ref|YP_001540437.1| - 0.023 14.3 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain tRNA_synthFbeta PF17759.1 gi|159041186|ref|YP_001540438.1| - 4.5e-35 121.0 0.0 6.4e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|159041186|ref|YP_001540438.1| - 2e-14 53.6 0.8 1e-13 51.4 0.2 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|159041186|ref|YP_001540438.1| - 1.8e-12 47.3 0.0 3.2e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|159041186|ref|YP_001540438.1| - 0.0071 16.5 0.0 0.094 12.9 0.0 2.7 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|159041186|ref|YP_001540438.1| - 0.086 12.3 0.0 0.75 9.2 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.20 gi|159041187|ref|YP_001540439.1| - 3.7e-73 246.0 0.0 4.8e-73 245.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|159041187|ref|YP_001540439.1| - 2.9e-06 26.9 0.0 0.00034 20.1 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|159041187|ref|YP_001540439.1| - 0.024 13.7 0.4 1.6 7.7 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) HTH_53 PF18606.1 gi|159041187|ref|YP_001540439.1| - 0.075 12.7 0.7 0.76 9.5 0.2 2.3 1 1 1 2 2 2 0 Zap helix turn helix N-terminal domain HTH_Crp_2 PF13545.6 gi|159041187|ref|YP_001540439.1| - 0.37 10.8 5.2 7.8 6.6 0.5 3.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Radical_SAM PF04055.21 gi|159041188|ref|YP_001540440.1| - 1.1e-23 84.5 0.0 3.3e-23 82.9 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|159041188|ref|YP_001540440.1| - 3e-09 37.3 0.1 6.1e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|159041188|ref|YP_001540440.1| - 8.5e-09 35.8 0.0 2.1e-08 34.5 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159041188|ref|YP_001540440.1| - 2e-07 31.2 0.0 3.8e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain RraA-like PF03737.15 gi|159041189|ref|YP_001540441.1| - 4.6e-31 108.0 0.3 5.7e-31 107.7 0.3 1.1 1 0 0 1 1 1 1 Aldolase/RraA RsgA_N PF16745.5 gi|159041189|ref|YP_001540441.1| - 0.077 12.8 0.2 0.18 11.6 0.2 1.6 1 0 0 1 1 1 0 RsgA N-terminal domain UPRTase PF14681.6 gi|159041190|ref|YP_001540442.1| - 4.3e-49 166.8 0.1 5.3e-49 166.5 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|159041190|ref|YP_001540442.1| - 2e-06 27.4 0.5 3.6e-06 26.6 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|159041190|ref|YP_001540442.1| - 0.17 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Pyr_redox_2 PF07992.14 gi|159041191|ref|YP_001540443.1| - 3.3e-33 115.2 0.0 4.1e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|159041191|ref|YP_001540443.1| - 5.7e-08 32.7 0.1 0.0054 16.3 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|159041191|ref|YP_001540443.1| - 4.1e-07 30.5 1.5 0.041 14.4 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|159041191|ref|YP_001540443.1| - 1e-06 28.9 0.2 2.1e-05 24.7 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|159041191|ref|YP_001540443.1| - 1e-05 25.0 4.6 0.0084 15.4 0.1 2.8 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|159041191|ref|YP_001540443.1| - 3.9e-05 22.9 0.6 0.13 11.3 0.0 3.4 3 1 0 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|159041191|ref|YP_001540443.1| - 0.00027 19.8 0.4 0.00083 18.2 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|159041191|ref|YP_001540443.1| - 0.0024 17.2 0.2 0.028 13.7 0.0 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|159041191|ref|YP_001540443.1| - 0.003 16.9 1.0 0.004 16.4 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|159041191|ref|YP_001540443.1| - 0.012 15.6 0.8 0.021 14.7 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|159041191|ref|YP_001540443.1| - 0.027 13.7 0.1 0.049 12.9 0.1 1.3 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|159041191|ref|YP_001540443.1| - 0.04 13.0 3.5 1.7 7.7 0.6 3.1 2 1 1 3 3 3 0 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|159041191|ref|YP_001540443.1| - 0.05 13.7 0.1 4.6 7.3 0.0 3.0 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.7 gi|159041191|ref|YP_001540443.1| - 0.085 12.2 0.1 2 7.7 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|159041191|ref|YP_001540443.1| - 0.093 12.7 0.5 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding LDcluster4 PF18306.1 gi|159041192|ref|YP_001540444.1| - 1.1e-20 73.8 0.0 1.2e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|159041192|ref|YP_001540444.1| - 0.0032 17.6 0.2 0.0053 16.9 0.2 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase LSDAT_prok PF18171.1 gi|159041192|ref|YP_001540444.1| - 0.012 14.9 0.1 0.021 14.1 0.0 1.5 2 0 0 2 2 2 0 SLOG in TRPM, prokaryote DUF1641 PF07849.11 gi|159041192|ref|YP_001540444.1| - 0.15 11.9 0.2 0.27 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1641) DUF373 PF04123.13 gi|159041193|ref|YP_001540445.1| - 1.8e-83 280.8 16.5 2.2e-83 280.5 16.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF2892 PF11127.8 gi|159041193|ref|YP_001540445.1| - 0.68 10.0 4.6 9.6 6.3 1.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) UPF0020 PF01170.18 gi|159041194|ref|YP_001540446.1| - 1.2e-09 38.2 0.0 4.4e-05 23.3 0.0 2.2 1 1 1 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|159041194|ref|YP_001540446.1| - 2.3e-08 34.0 0.0 0.0006 19.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase HSBP1 PF06825.12 gi|159041195|ref|YP_001540447.1| - 2.8e-10 39.9 31.5 0.017 14.9 0.1 7.2 3 1 4 7 7 6 3 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|159041195|ref|YP_001540447.1| - 4e-07 30.2 5.2 0.032 14.5 3.0 3.4 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) Apolipoprotein PF01442.18 gi|159041195|ref|YP_001540447.1| - 5.7e-07 29.6 0.4 7.9e-06 25.9 0.3 2.2 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Transcrip_act PF04949.13 gi|159041195|ref|YP_001540447.1| - 1.9e-06 27.9 15.6 0.00055 19.9 1.1 3.2 1 1 2 3 3 3 3 Transcriptional activator Baculo_PEP_C PF04513.12 gi|159041195|ref|YP_001540447.1| - 2.1e-06 27.8 5.7 0.0043 17.1 3.9 2.9 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|159041195|ref|YP_001540447.1| - 6.2e-06 25.2 6.3 2.4e-05 23.2 5.9 1.8 1 1 0 1 1 1 1 AAA domain DUF1664 PF07889.12 gi|159041195|ref|YP_001540447.1| - 9.5e-06 25.7 10.5 0.0038 17.2 1.9 3.5 2 1 1 3 3 2 2 Protein of unknown function (DUF1664) TMF_TATA_bd PF12325.8 gi|159041195|ref|YP_001540447.1| - 4.7e-05 23.6 0.4 0.11 12.7 0.6 2.9 1 1 1 3 3 3 1 TATA element modulatory factor 1 TATA binding DUF2884 PF11101.8 gi|159041195|ref|YP_001540447.1| - 0.00014 21.4 2.2 0.063 12.8 0.3 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2884) TBCC_N PF16752.5 gi|159041195|ref|YP_001540447.1| - 0.00016 22.1 1.0 1.4 9.4 0.1 3.1 1 1 1 2 2 2 1 Tubulin-specific chaperone C N-terminal domain Phasin PF05597.11 gi|159041195|ref|YP_001540447.1| - 0.00021 21.3 8.4 0.12 12.4 0.2 3.2 1 1 2 3 3 3 2 Poly(hydroxyalcanoate) granule associated protein (phasin) NPV_P10 PF05531.12 gi|159041195|ref|YP_001540447.1| - 0.00023 21.6 8.8 0.96 10.0 4.0 4.3 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 gi|159041195|ref|YP_001540447.1| - 0.00025 21.5 9.8 0.08 13.4 4.6 2.9 1 1 1 2 2 2 2 Protein of unknown function DUF16 FliD_C PF07195.12 gi|159041195|ref|YP_001540447.1| - 0.00043 19.8 6.7 0.12 11.8 2.2 3.5 1 1 2 3 3 3 1 Flagellar hook-associated protein 2 C-terminus DUF4164 PF13747.6 gi|159041195|ref|YP_001540447.1| - 0.00052 20.2 15.8 0.091 13.1 4.4 3.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4164) Snapin_Pallidin PF14712.6 gi|159041195|ref|YP_001540447.1| - 0.00053 20.4 3.6 0.041 14.3 1.2 2.9 1 1 2 3 3 2 1 Snapin/Pallidin MCPsignal PF00015.21 gi|159041195|ref|YP_001540447.1| - 0.00059 19.7 4.7 0.11 12.2 1.0 2.7 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Tropomyosin_1 PF12718.7 gi|159041195|ref|YP_001540447.1| - 0.00069 19.8 2.6 0.011 15.9 2.1 2.3 1 1 1 2 2 2 1 Tropomyosin like Phage_Mu_Gam PF07352.12 gi|159041195|ref|YP_001540447.1| - 0.00071 19.5 8.1 0.52 10.2 0.6 3.4 2 1 1 3 3 3 2 Bacteriophage Mu Gam like protein adh_short_C2 PF13561.6 gi|159041195|ref|YP_001540447.1| - 0.00074 19.1 1.0 0.0028 17.2 0.5 1.9 1 1 1 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Ran-binding PF05508.11 gi|159041195|ref|YP_001540447.1| - 0.00079 18.5 8.6 0.039 12.9 3.0 2.1 1 1 1 2 2 2 2 RanGTP-binding protein DUF3450 PF11932.8 gi|159041195|ref|YP_001540447.1| - 0.00092 18.6 0.2 0.023 14.0 0.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) DUF1351 PF07083.11 gi|159041195|ref|YP_001540447.1| - 0.0014 18.4 7.5 0.012 15.3 0.3 2.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1351) Spectrin PF00435.21 gi|159041195|ref|YP_001540447.1| - 0.0028 18.1 0.6 1.4 9.4 0.0 2.9 1 1 2 3 3 3 1 Spectrin repeat Flagellin_C PF00700.21 gi|159041195|ref|YP_001540447.1| - 0.0031 17.8 8.4 0.42 11.0 0.6 3.8 2 1 2 4 4 4 1 Bacterial flagellin C-terminal helical region Muted PF14942.6 gi|159041195|ref|YP_001540447.1| - 0.0036 17.7 4.8 0.026 14.9 2.4 2.5 1 1 2 3 3 3 1 Organelle biogenesis, Muted-like protein Prominin PF05478.11 gi|159041195|ref|YP_001540447.1| - 0.0055 14.7 4.0 0.011 13.8 4.0 1.5 1 1 0 1 1 1 1 Prominin DUF4407 PF14362.6 gi|159041195|ref|YP_001540447.1| - 0.0061 15.9 2.7 0.054 12.8 2.7 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) ApoLp-III PF07464.11 gi|159041195|ref|YP_001540447.1| - 0.0067 16.5 0.2 2.2 8.3 0.2 2.8 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF885 PF05960.11 gi|159041195|ref|YP_001540447.1| - 0.0083 15.8 0.1 0.01 15.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) SF-assemblin PF06705.11 gi|159041195|ref|YP_001540447.1| - 0.011 15.2 15.8 0.033 13.5 14.8 1.9 1 1 1 2 2 2 0 SF-assemblin/beta giardin Fib_alpha PF08702.10 gi|159041195|ref|YP_001540447.1| - 0.013 15.7 7.4 0.31 11.2 2.7 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.19 gi|159041195|ref|YP_001540447.1| - 0.014 13.3 3.0 1.1 7.0 0.0 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family LUC7 PF03194.15 gi|159041195|ref|YP_001540447.1| - 0.016 14.9 7.3 0.074 12.7 2.7 2.5 1 1 1 2 2 2 0 LUC7 N_terminus DUF3422 PF11902.8 gi|159041195|ref|YP_001540447.1| - 0.018 14.2 0.3 3 6.8 0.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3422) Nup54 PF13874.6 gi|159041195|ref|YP_001540447.1| - 0.021 15.0 1.0 0.16 12.1 1.0 2.3 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Spc7 PF08317.11 gi|159041195|ref|YP_001540447.1| - 0.021 13.7 1.7 0.036 13.0 0.8 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein V-SNARE_C PF12352.8 gi|159041195|ref|YP_001540447.1| - 0.022 15.0 6.5 6.9 7.0 0.1 4.2 3 2 2 5 5 5 0 Snare region anchored in the vesicle membrane C-terminus BLOC1_2 PF10046.9 gi|159041195|ref|YP_001540447.1| - 0.022 15.1 6.5 7.4 6.9 4.6 3.4 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PIN_8 PF18476.1 gi|159041195|ref|YP_001540447.1| - 0.023 14.5 4.2 0.16 11.8 4.1 2.0 1 1 0 1 1 1 0 PIN like domain Exonuc_VII_L PF02601.15 gi|159041195|ref|YP_001540447.1| - 0.024 14.2 0.8 0.082 12.5 0.8 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit GCN5L1 PF06320.13 gi|159041195|ref|YP_001540447.1| - 0.028 14.6 0.6 1.7 8.9 0.8 2.9 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Fmp27_WPPW PF10359.9 gi|159041195|ref|YP_001540447.1| - 0.031 13.1 4.6 0.7 8.7 2.3 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain BAR_3 PF16746.5 gi|159041195|ref|YP_001540447.1| - 0.037 13.7 1.8 1.5 8.5 0.3 3.1 2 1 1 3 3 3 0 BAR domain of APPL family Trimer_CC PF08954.11 gi|159041195|ref|YP_001540447.1| - 0.038 13.6 3.6 0.29 10.7 0.1 3.5 3 2 0 3 3 3 0 Trimerisation motif Flagellin_N PF00669.20 gi|159041195|ref|YP_001540447.1| - 0.038 14.1 2.9 0.097 12.8 1.9 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region APG17 PF04108.12 gi|159041195|ref|YP_001540447.1| - 0.042 13.0 4.8 1.3 8.0 2.8 2.6 1 1 1 2 2 2 0 Autophagy protein Apg17 Fzo_mitofusin PF04799.13 gi|159041195|ref|YP_001540447.1| - 0.044 13.3 2.0 6.9 6.2 0.5 3.2 1 1 2 3 3 3 0 fzo-like conserved region HMMR_N PF15905.5 gi|159041195|ref|YP_001540447.1| - 0.044 13.3 3.1 0.094 12.2 2.8 1.6 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF4041 PF13250.6 gi|159041195|ref|YP_001540447.1| - 0.058 13.3 12.1 1.6 8.7 0.1 5.4 3 2 5 8 8 8 0 Domain of unknown function (DUF4041) DUF2228 PF10228.9 gi|159041195|ref|YP_001540447.1| - 0.063 13.0 3.7 0.031 14.0 1.7 1.5 2 0 0 2 2 1 0 Uncharacterised conserved protein (DUF2228) DUF4795 PF16043.5 gi|159041195|ref|YP_001540447.1| - 0.069 12.7 11.8 0.25 10.9 10.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) DUF2703 PF10865.8 gi|159041195|ref|YP_001540447.1| - 0.071 13.3 0.2 1.9 8.7 0.1 3.1 1 1 2 3 3 2 0 Domain of unknown function (DUF2703) KH_5 PF13184.6 gi|159041195|ref|YP_001540447.1| - 0.073 13.2 9.7 0.3 11.2 0.2 3.8 2 1 3 5 5 4 0 NusA-like KH domain Mst1_SARAH PF11629.8 gi|159041195|ref|YP_001540447.1| - 0.075 13.1 2.1 3 8.0 0.1 3.7 1 1 1 3 3 3 0 C terminal SARAH domain of Mst1 TssO PF17561.2 gi|159041195|ref|YP_001540447.1| - 0.084 13.0 8.0 3.5 7.7 6.1 3.0 1 1 2 3 3 3 0 Type VI secretion system, TssO DUF746 PF05344.11 gi|159041195|ref|YP_001540447.1| - 0.088 12.7 0.1 8.6 6.3 0.0 3.0 3 0 0 3 3 2 0 Domain of Unknown Function (DUF746) Uso1_p115_C PF04871.13 gi|159041195|ref|YP_001540447.1| - 0.12 12.8 2.6 0.59 10.5 2.0 2.3 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region PLC-beta_C PF08703.10 gi|159041195|ref|YP_001540447.1| - 0.12 12.3 3.4 0.32 11.0 1.2 2.3 2 1 0 2 2 2 0 PLC-beta C terminal Mt_ATP-synt_D PF05873.12 gi|159041195|ref|YP_001540447.1| - 0.13 12.1 1.5 8.5 6.2 0.5 3.3 1 1 2 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) CLZ PF16526.5 gi|159041195|ref|YP_001540447.1| - 0.25 11.7 7.5 6.6 7.2 0.4 3.8 1 1 4 5 5 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KID PF02524.14 gi|159041195|ref|YP_001540447.1| - 0.28 11.4 0.2 0.28 11.4 0.2 5.6 7 0 0 7 7 3 0 KID repeat TMPIT PF07851.13 gi|159041195|ref|YP_001540447.1| - 0.29 10.3 0.5 1.3 8.2 0.3 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF1451 PF07295.11 gi|159041195|ref|YP_001540447.1| - 0.3 11.1 1.7 0.36 10.9 0.1 2.0 2 1 1 3 3 2 0 Zinc-ribbon containing domain HalX PF08663.10 gi|159041195|ref|YP_001540447.1| - 0.34 11.2 8.8 73 3.8 0.0 4.6 2 1 1 3 3 3 0 HalX domain YkyA PF10368.9 gi|159041195|ref|YP_001540447.1| - 0.35 10.5 8.3 0.37 10.5 3.8 2.8 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein FlaC_arch PF05377.11 gi|159041195|ref|YP_001540447.1| - 0.36 11.3 10.5 8.7 6.8 0.1 4.8 1 1 4 5 5 5 0 Flagella accessory protein C (FlaC) DASH_Dad1 PF08649.10 gi|159041195|ref|YP_001540447.1| - 0.43 10.8 6.4 8.6 6.6 0.6 4.3 2 2 3 5 5 4 0 DASH complex subunit Dad1 Prefoldin_3 PF13758.6 gi|159041195|ref|YP_001540447.1| - 0.52 10.4 13.0 1.9 8.6 0.5 4.7 1 1 3 4 4 4 0 Prefoldin subunit LMBR1 PF04791.16 gi|159041195|ref|YP_001540447.1| - 0.64 8.9 3.0 1.5 7.6 3.0 1.6 1 1 0 1 1 1 0 LMBR1-like membrane protein XhlA PF10779.9 gi|159041195|ref|YP_001540447.1| - 0.69 10.2 24.2 0.4 10.9 0.5 4.9 3 2 1 4 4 3 0 Haemolysin XhlA DUF4577 PF15145.6 gi|159041195|ref|YP_001540447.1| - 0.73 9.9 16.7 2 8.4 0.6 3.7 2 2 1 3 3 3 0 Domain of unknown function (DUF4577) Med4 PF10018.9 gi|159041195|ref|YP_001540447.1| - 0.85 9.3 3.4 6.8 6.3 3.4 2.2 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Fez1 PF06818.15 gi|159041195|ref|YP_001540447.1| - 0.87 10.0 4.0 13 6.2 3.6 2.5 1 1 0 1 1 1 0 Fez1 PMC2NT PF08066.12 gi|159041195|ref|YP_001540447.1| - 0.91 10.3 11.2 0.57 10.9 1.6 3.1 3 1 0 3 3 2 0 PMC2NT (NUC016) domain Allexi_40kDa PF05549.11 gi|159041195|ref|YP_001540447.1| - 0.91 9.0 3.9 7.8 5.9 0.2 2.1 1 1 2 3 3 3 0 Allexivirus 40kDa protein DUF3782 PF12644.7 gi|159041195|ref|YP_001540447.1| - 0.99 9.6 6.3 31 4.8 0.1 4.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3782) DUF1938 PF09153.10 gi|159041195|ref|YP_001540447.1| - 1.3 9.2 6.9 2.7 8.1 1.1 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF1938) DUF4455 PF14643.6 gi|159041195|ref|YP_001540447.1| - 1.4 7.5 6.6 6.6 5.3 0.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4455) Peptidase_M75 PF09375.10 gi|159041195|ref|YP_001540447.1| - 1.7 8.1 4.4 14 5.0 0.5 2.5 1 1 1 2 2 2 0 Imelysin DUF4200 PF13863.6 gi|159041195|ref|YP_001540447.1| - 1.8 9.0 6.0 12 6.3 3.5 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) DUF1640 PF07798.11 gi|159041195|ref|YP_001540447.1| - 2 8.4 15.8 8.5 6.4 4.1 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Erythro-docking PF09277.11 gi|159041195|ref|YP_001540447.1| - 2.5 8.1 7.8 59 3.7 0.4 4.5 3 2 0 3 3 3 0 Erythronolide synthase, docking LidA_Long_CC PF18641.1 gi|159041195|ref|YP_001540447.1| - 2.7 8.0 7.2 28 4.7 1.7 3.3 1 1 1 2 2 2 0 LidA long coiled-coil domain DUF5446 PF17522.2 gi|159041195|ref|YP_001540447.1| - 3 8.1 12.0 21 5.4 1.1 4.3 2 1 3 5 5 4 0 Family of unknown function (DUF5446) Atg14 PF10186.9 gi|159041195|ref|YP_001540447.1| - 4.2 6.4 5.6 24 3.9 5.6 2.0 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 KIP1 PF07765.12 gi|159041195|ref|YP_001540447.1| - 7 6.9 11.7 1 9.5 0.2 3.3 3 1 0 3 3 2 0 KIP1-like protein MAPKK1_Int PF08923.10 gi|159041196|ref|YP_001540448.1| - 7.9e-05 22.5 0.5 0.0001 22.1 0.5 1.2 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Robl_LC7 PF03259.17 gi|159041196|ref|YP_001540448.1| - 8.5e-05 22.3 0.1 0.00012 21.8 0.1 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain Glycos_transf_2 PF00535.26 gi|159041198|ref|YP_001540450.1| - 5.8e-32 110.8 0.0 8.1e-32 110.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|159041198|ref|YP_001540450.1| - 3.9e-23 81.9 14.5 8.8e-23 80.8 14.3 1.7 2 0 0 2 2 2 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|159041198|ref|YP_001540450.1| - 1.8e-14 54.2 0.0 3.4e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Helicase_C_2 PF13307.6 gi|159041199|ref|YP_001540451.1| - 1.8e-31 109.6 0.0 3.5e-31 108.7 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|159041199|ref|YP_001540451.1| - 5.8e-20 71.6 0.1 8.8e-20 71.0 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 HBB PF06777.11 gi|159041199|ref|YP_001540451.1| - 8.9e-08 32.0 0.0 1.8e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 gi|159041199|ref|YP_001540451.1| - 1.3e-06 28.2 0.0 0.00017 21.4 0.0 3.4 4 0 0 4 4 4 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|159041199|ref|YP_001540451.1| - 0.00023 21.2 0.0 0.066 13.2 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PALP PF00291.25 gi|159041199|ref|YP_001540451.1| - 0.003 17.0 0.1 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme AAA_22 PF13401.6 gi|159041199|ref|YP_001540451.1| - 0.0041 17.4 0.2 6.2 7.1 0.0 3.2 3 1 1 4 4 4 2 AAA domain AAA_25 PF13481.6 gi|159041199|ref|YP_001540451.1| - 0.0061 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|159041199|ref|YP_001540451.1| - 0.0087 15.5 0.4 0.19 11.2 0.1 2.6 3 0 0 3 3 3 1 PhoH-like protein AAA_19 PF13245.6 gi|159041199|ref|YP_001540451.1| - 0.051 13.9 0.0 0.14 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain NTP_transf_3 PF12804.7 gi|159041200|ref|YP_001540452.1| - 0.015 15.7 0.0 0.018 15.4 0.0 1.1 1 0 0 1 1 1 0 MobA-like NTP transferase domain Nitro_FeMo-Co PF02579.17 gi|159041201|ref|YP_001540453.1| - 0.00086 19.6 0.0 0.0012 19.2 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF1953 PF09196.10 gi|159041201|ref|YP_001540453.1| - 0.14 12.0 0.2 0.2 11.5 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1953) PBP_like PF12727.7 gi|159041202|ref|YP_001540454.1| - 4.7e-34 117.2 0.0 7.3e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|159041202|ref|YP_001540454.1| - 3.7e-09 36.4 0.0 6.9e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Phosphonate-bd PF12974.7 gi|159041202|ref|YP_001540454.1| - 0.0072 15.9 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF134 PF02001.16 gi|159041202|ref|YP_001540454.1| - 0.0092 16.5 0.1 0.14 12.7 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|159041202|ref|YP_001540454.1| - 0.011 15.5 0.0 0.034 14.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|159041202|ref|YP_001540454.1| - 0.034 14.2 0.2 0.16 12.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix NUMOD1 PF07453.13 gi|159041202|ref|YP_001540454.1| - 0.13 12.6 0.2 0.29 11.4 0.2 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_psq PF05225.16 gi|159041202|ref|YP_001540454.1| - 0.13 12.0 0.0 0.33 10.7 0.0 1.7 1 0 0 1 1 1 0 helix-turn-helix, Psq domain CBS PF00571.28 gi|159041203|ref|YP_001540455.1| - 2.9e-21 75.7 6.9 2.7e-11 43.7 0.5 2.1 2 0 0 2 2 2 2 CBS domain DUF705 PF05152.12 gi|159041203|ref|YP_001540455.1| - 0.016 14.7 0.1 0.021 14.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF705) Ribosomal_L9_C PF03948.14 gi|159041203|ref|YP_001540455.1| - 0.024 15.1 0.2 0.04 14.4 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain ATPase_2 PF01637.18 gi|159041203|ref|YP_001540455.1| - 0.038 13.9 1.2 0.056 13.3 1.1 1.4 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea LacAB_rpiB PF02502.18 gi|159041203|ref|YP_001540455.1| - 0.044 13.8 0.1 0.063 13.3 0.1 1.2 1 0 0 1 1 1 0 Ribose/Galactose Isomerase IF3_N PF05198.16 gi|159041203|ref|YP_001540455.1| - 0.17 12.2 3.8 4.7 7.6 0.3 3.0 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain MGS PF02142.22 gi|159041203|ref|YP_001540455.1| - 0.8 9.9 2.9 0.98 9.6 0.1 2.0 1 1 1 2 2 2 0 MGS-like domain EMG1 PF03587.14 gi|159041204|ref|YP_001540456.1| - 4e-40 137.5 0.0 4.5e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase SPOUT_MTase_2 PF14419.6 gi|159041204|ref|YP_001540456.1| - 0.04 13.3 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP SPOUT_MTase PF02590.17 gi|159041204|ref|YP_001540456.1| - 0.066 13.2 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase HrcA_DNA-bdg PF03444.15 gi|159041204|ref|YP_001540456.1| - 0.13 12.0 0.1 0.27 10.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Aconitase PF00330.20 gi|159041205|ref|YP_001540457.1| - 6.2e-173 576.0 0.0 8.4e-173 575.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|159041205|ref|YP_001540457.1| - 5.2e-41 140.0 0.0 8.2e-41 139.4 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain YwiC PF14256.6 gi|159041206|ref|YP_001540458.1| - 0.93 9.8 13.1 0.084 13.2 5.1 2.8 2 1 0 2 2 2 0 YwiC-like protein RimK PF08443.11 gi|159041207|ref|YP_001540459.1| - 4.6e-33 114.4 0.0 6.9e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|159041207|ref|YP_001540459.1| - 4.6e-13 48.9 0.0 7e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|159041207|ref|YP_001540459.1| - 7.4e-10 39.1 0.0 1.4e-09 38.2 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|159041207|ref|YP_001540459.1| - 4.2e-08 32.8 0.0 0.0069 15.7 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|159041207|ref|YP_001540459.1| - 0.00011 21.5 0.0 0.032 13.5 0.0 2.3 2 0 0 2 2 2 2 YheC/D like ATP-grasp Rimk_N PF18030.1 gi|159041207|ref|YP_001540459.1| - 0.024 15.0 0.2 0.14 12.6 0.2 2.2 1 1 0 1 1 1 0 RimK PreATP-grasp domain AA_kinase PF00696.28 gi|159041208|ref|YP_001540460.1| - 2.5e-25 89.5 0.2 3e-25 89.2 0.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L2 PF00181.23 gi|159041210|ref|YP_001540462.1| - 0.084 12.9 0.1 0.16 11.9 0.1 1.5 2 0 0 2 2 2 0 Ribosomal Proteins L2, RNA binding domain Cob_adeno_trans PF01923.18 gi|159041211|ref|YP_001540463.1| - 9.7e-06 25.8 0.0 1.3e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Pox_A51 PF04948.13 gi|159041211|ref|YP_001540463.1| - 0.014 14.3 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A51 protein Helicase_RecD PF05127.14 gi|159041212|ref|YP_001540464.1| - 7.2e-56 188.8 0.0 1.2e-55 188.1 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|159041212|ref|YP_001540464.1| - 3.6e-45 154.1 0.0 5.1e-30 104.6 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|159041212|ref|YP_001540464.1| - 2.4e-28 97.9 0.0 6.6e-28 96.5 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|159041212|ref|YP_001540464.1| - 1.7e-05 25.1 0.1 0.00088 19.5 0.0 2.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family AAA_30 PF13604.6 gi|159041212|ref|YP_001540464.1| - 0.0018 18.1 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain tRNA_bind_2 PF13725.6 gi|159041212|ref|YP_001540464.1| - 0.0042 16.8 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_7 PF13508.7 gi|159041212|ref|YP_001540464.1| - 0.074 13.5 0.0 0.59 10.6 0.0 2.5 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain RNA_pol_RpbG PF16992.5 gi|159041213|ref|YP_001540465.1| - 0.057 13.5 0.2 0.064 13.3 0.2 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G ZapB PF06005.12 gi|159041214|ref|YP_001540466.1| - 0.17 12.4 4.1 0.23 11.9 0.2 2.5 2 1 0 2 2 2 0 Cell division protein ZapB polyprenyl_synt PF00348.17 gi|159041215|ref|YP_001540467.1| - 2.7e-55 187.2 0.0 3.4e-55 186.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase FIVAR PF07554.13 gi|159041215|ref|YP_001540467.1| - 0.024 15.4 0.4 0.062 14.1 0.4 1.8 1 0 0 1 1 1 0 FIVAR domain Methyltransf_11 PF08241.12 gi|159041216|ref|YP_001540468.1| - 9e-07 29.5 0.0 1.3e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041216|ref|YP_001540468.1| - 2.3e-05 25.0 0.0 3.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|159041216|ref|YP_001540468.1| - 0.06 13.1 0.1 0.08 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|159041216|ref|YP_001540468.1| - 0.061 13.1 0.3 0.12 12.1 0.3 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159041216|ref|YP_001540468.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ribonuc_red_lgC PF02867.15 gi|159041217|ref|YP_001540469.1| - 5e-150 500.5 0.0 6.2e-150 500.2 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|159041217|ref|YP_001540469.1| - 3.4e-27 94.3 0.6 5.4e-26 90.4 0.0 2.5 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|159041217|ref|YP_001540469.1| - 3.7e-06 27.4 0.0 9.7e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 ATP cone domain AOX PF01786.17 gi|159041217|ref|YP_001540469.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Alternative oxidase Tachykinin PF02202.16 gi|159041217|ref|YP_001540469.1| - 0.19 11.7 0.1 0.45 10.5 0.1 1.7 1 0 0 1 1 1 0 Tachykinin family PFK PF00365.20 gi|159041220|ref|YP_001540472.1| - 7.7e-87 291.2 0.3 9e-87 291.0 0.3 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.21 gi|159041220|ref|YP_001540472.1| - 0.00061 19.1 0.1 0.00099 18.4 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|159041220|ref|YP_001540472.1| - 0.0063 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Aminotran_1_2 PF00155.21 gi|159041221|ref|YP_001540473.1| - 1.3e-54 185.7 0.0 1.6e-54 185.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|159041221|ref|YP_001540473.1| - 7.6e-09 34.6 0.0 1.2e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|159041221|ref|YP_001540473.1| - 1.5e-06 27.7 0.0 3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|159041221|ref|YP_001540473.1| - 1.5e-05 24.1 0.0 2.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.7 gi|159041221|ref|YP_001540473.1| - 0.0003 19.7 0.0 0.0008 18.3 0.0 1.7 3 0 0 3 3 3 1 Alanine-glyoxylate amino-transferase Zn_ribbon_SprT PF17283.2 gi|159041222|ref|YP_001540474.1| - 0.00012 21.9 3.8 0.00017 21.4 3.8 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain Elf1 PF05129.13 gi|159041222|ref|YP_001540474.1| - 0.003 17.6 0.1 0.0035 17.4 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|159041222|ref|YP_001540474.1| - 0.0058 16.0 0.4 0.41 10.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-RING_7 PF02591.15 gi|159041222|ref|YP_001540474.1| - 0.0064 16.7 1.0 0.16 12.2 0.0 2.4 2 1 1 3 3 3 1 C4-type zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|159041222|ref|YP_001540474.1| - 0.0068 16.1 6.3 0.11 12.2 3.1 2.2 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.6 gi|159041222|ref|YP_001540474.1| - 0.0076 16.6 0.2 0.012 16.0 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-H2C2_2 PF13465.6 gi|159041222|ref|YP_001540474.1| - 0.0089 16.4 0.6 0.12 12.8 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|159041222|ref|YP_001540474.1| - 0.01 15.5 1.4 1.1 9.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.16 gi|159041222|ref|YP_001540474.1| - 0.021 14.7 2.7 1.1 9.1 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger IBR PF01485.21 gi|159041222|ref|YP_001540474.1| - 0.032 14.5 0.1 0.04 14.2 0.1 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DZR PF12773.7 gi|159041222|ref|YP_001540474.1| - 0.035 14.1 0.2 0.33 11.0 0.4 1.9 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|159041222|ref|YP_001540474.1| - 0.035 14.8 0.1 0.044 14.5 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbon family Desulfoferrod_N PF06397.12 gi|159041222|ref|YP_001540474.1| - 0.041 13.5 2.7 0.36 10.5 0.2 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ZPR1 PF03367.13 gi|159041222|ref|YP_001540474.1| - 0.08 12.8 0.2 0.1 12.5 0.2 1.2 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zf-CSL PF05207.13 gi|159041222|ref|YP_001540474.1| - 0.084 12.6 1.2 0.27 11.0 1.4 1.6 1 1 1 2 2 2 0 CSL zinc finger RNA_POL_M_15KD PF02150.16 gi|159041222|ref|YP_001540474.1| - 0.12 12.2 0.9 10 6.1 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|159041222|ref|YP_001540474.1| - 0.12 12.3 2.5 4.3 7.3 0.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|159041222|ref|YP_001540474.1| - 0.14 12.2 0.7 1 9.4 0.7 2.0 1 1 0 1 1 1 0 CpXC protein Zn_ribbon_recom PF13408.6 gi|159041222|ref|YP_001540474.1| - 0.18 12.4 4.5 0.95 10.0 4.5 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|159041222|ref|YP_001540474.1| - 0.21 11.6 3.4 1.2 9.2 3.5 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|159041222|ref|YP_001540474.1| - 0.23 11.4 2.3 2.5 8.1 2.6 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|159041222|ref|YP_001540474.1| - 0.24 11.5 4.1 2.1 8.5 4.1 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|159041222|ref|YP_001540474.1| - 0.34 11.0 2.2 1.6 8.9 0.2 2.1 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|159041222|ref|YP_001540474.1| - 1.1 9.1 5.5 10 6.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF87 PF01935.17 gi|159041223|ref|YP_001540475.1| - 2.5e-17 63.7 0.1 4.3e-17 63.0 0.1 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|159041223|ref|YP_001540475.1| - 4.6e-07 29.1 0.0 0.00018 20.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|159041223|ref|YP_001540475.1| - 1.7e-05 24.3 0.0 3.6e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|159041223|ref|YP_001540475.1| - 3.4e-05 22.9 0.0 6.1e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|159041223|ref|YP_001540475.1| - 4.4e-05 23.8 0.1 0.02 15.2 0.0 3.2 3 0 0 3 3 3 1 AAA domain DUF815 PF05673.13 gi|159041223|ref|YP_001540475.1| - 0.0001 21.6 0.0 0.00018 20.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|159041223|ref|YP_001540475.1| - 0.0086 16.1 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|159041223|ref|YP_001540475.1| - 0.013 15.3 0.0 0.045 13.5 0.0 1.9 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|159041223|ref|YP_001540475.1| - 0.098 13.0 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DUF2710 PF10921.8 gi|159041223|ref|YP_001540475.1| - 0.12 12.8 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) DUF853 PF05872.12 gi|159041223|ref|YP_001540475.1| - 0.2 10.2 0.0 3.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF4119 PF13494.6 gi|159041225|ref|YP_001540477.1| - 0.00043 20.4 0.0 0.00055 20.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function, B. Theta Gene description (DUF4119) CbiA PF01656.23 gi|159041226|ref|YP_001540478.1| - 6.1e-08 32.8 0.1 1.1e-06 28.7 0.1 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|159041226|ref|YP_001540478.1| - 0.00027 20.9 0.0 0.00064 19.7 0.0 1.7 2 1 0 2 2 2 1 AAA domain ParA PF10609.9 gi|159041226|ref|YP_001540478.1| - 0.0074 15.8 0.1 0.013 15.0 0.1 1.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA PF00004.29 gi|159041226|ref|YP_001540478.1| - 0.14 12.6 0.0 0.98 9.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AP_endonuc_2 PF01261.24 gi|159041227|ref|YP_001540479.1| - 2.4e-27 95.8 0.0 3.2e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel NAC PF01849.18 gi|159041228|ref|YP_001540480.1| - 0.00013 21.9 0.3 0.00024 21.0 0.1 1.6 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|159041228|ref|YP_001540480.1| - 0.00015 21.5 0.0 0.0005 19.8 0.1 1.7 2 0 0 2 2 2 1 UBA-like domain HOIP-UBA PF16678.5 gi|159041228|ref|YP_001540480.1| - 0.017 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair UPF0154 PF03672.13 gi|159041228|ref|YP_001540480.1| - 0.093 12.8 0.0 9.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) B5 PF03484.15 gi|159041228|ref|YP_001540480.1| - 0.099 13.0 0.1 0.43 10.9 0.0 2.0 2 1 0 2 2 2 0 tRNA synthetase B5 domain Tafi-CsgC PF10610.9 gi|159041228|ref|YP_001540480.1| - 0.15 12.3 0.1 0.36 11.1 0.0 1.7 2 0 0 2 2 2 0 Thin aggregative fimbriae synthesis protein HhH-GPD PF00730.25 gi|159041229|ref|YP_001540481.1| - 3.5e-11 43.5 0.0 4.5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|159041229|ref|YP_001540481.1| - 0.015 15.9 0.1 0.65 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain Glyco_hydro_1 PF00232.18 gi|159041230|ref|YP_001540482.1| - 2.5e-65 220.7 4.3 8e-38 130.0 0.2 3.1 2 1 1 3 3 3 3 Glycosyl hydrolase family 1 DUF2122 PF09895.9 gi|159041231|ref|YP_001540483.1| - 1.8e-27 95.8 0.0 2.5e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) SBP_bac_5 PF00496.22 gi|159041232|ref|YP_001540484.1| - 7.8e-29 100.8 4.5 1.5e-28 99.9 4.5 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041232|ref|YP_001540484.1| - 0.019 14.9 11.4 0.028 14.3 11.4 1.2 1 0 0 1 1 1 0 Rifin Amnionless PF14828.6 gi|159041232|ref|YP_001540484.1| - 1.6 7.5 3.5 2.4 6.9 3.5 1.2 1 0 0 1 1 1 0 Amnionless Stevor PF17410.2 gi|159041232|ref|YP_001540484.1| - 2.7 7.5 15.2 4.3 6.8 15.2 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame tRNA_bind PF01588.20 gi|159041233|ref|YP_001540485.1| - 4.2e-25 87.7 0.1 4.5e-25 87.6 0.1 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Rep_fac_C PF08542.11 gi|159041233|ref|YP_001540485.1| - 0.14 12.6 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 Replication factor C C-terminal domain GFO_IDH_MocA PF01408.22 gi|159041234|ref|YP_001540486.1| - 2e-23 83.5 0.1 3.2e-23 82.8 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041234|ref|YP_001540486.1| - 5.1e-05 23.2 0.0 8.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|159041234|ref|YP_001540486.1| - 0.00021 21.9 0.0 0.00032 21.3 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|159041234|ref|YP_001540486.1| - 0.00023 21.7 0.0 0.00043 20.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|159041234|ref|YP_001540486.1| - 0.00049 20.3 0.0 0.00085 19.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|159041234|ref|YP_001540486.1| - 0.0069 16.7 0.1 0.032 14.5 0.1 2.2 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|159041234|ref|YP_001540486.1| - 0.007 16.8 0.0 0.01 16.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|159041234|ref|YP_001540486.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|159041234|ref|YP_001540486.1| - 0.058 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|159041234|ref|YP_001540486.1| - 0.062 13.6 0.1 0.11 12.8 0.1 1.5 1 1 0 1 1 1 0 TrkA-N domain HNH_5 PF14279.6 gi|159041235|ref|YP_001540487.1| - 0.025 14.4 0.0 0.046 13.6 0.0 1.5 1 1 0 1 1 1 0 HNH endonuclease tRNA-synt_His PF13393.6 gi|159041236|ref|YP_001540488.1| - 3.7e-63 213.7 0.0 4.6e-63 213.3 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|159041236|ref|YP_001540488.1| - 2.7e-10 40.3 1.3 7.1e-10 38.9 0.1 2.3 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|159041236|ref|YP_001540488.1| - 1.1e-06 28.7 0.0 8.2e-06 25.9 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|159041236|ref|YP_001540488.1| - 0.0012 18.4 0.0 0.012 15.1 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) ATP-grasp PF02222.22 gi|159041238|ref|YP_001540490.1| - 5.8e-43 146.4 0.0 9.4e-43 145.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|159041238|ref|YP_001540490.1| - 2.4e-09 37.0 0.0 9.2e-09 35.1 0.0 1.9 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|159041238|ref|YP_001540490.1| - 4.4e-09 36.2 0.0 1.1e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Pyr_redox_3 PF13738.6 gi|159041238|ref|YP_001540490.1| - 1.6e-05 24.4 0.3 0.0023 17.3 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GARS_A PF01071.19 gi|159041238|ref|YP_001540490.1| - 7.5e-05 22.6 0.0 0.0004 20.2 0.0 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Epimerase PF01370.21 gi|159041238|ref|YP_001540490.1| - 0.00022 20.7 0.1 0.00037 20.0 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATP-grasp_4 PF13535.6 gi|159041238|ref|YP_001540490.1| - 0.00039 20.1 0.2 0.001 18.7 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|159041238|ref|YP_001540490.1| - 0.0006 19.2 0.2 0.0011 18.4 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|159041238|ref|YP_001540490.1| - 0.00084 18.7 0.5 0.0024 17.2 0.1 2.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase PurK_C PF17769.1 gi|159041238|ref|YP_001540490.1| - 0.001 18.7 0.1 0.0026 17.4 0.0 1.7 2 0 0 2 2 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain LAL_C2 PF18603.1 gi|159041238|ref|YP_001540490.1| - 0.0015 18.6 1.2 0.0066 16.6 0.2 2.6 2 1 0 2 2 2 1 L-amino acid ligase C-terminal domain 2 Pyr_redox PF00070.27 gi|159041238|ref|YP_001540490.1| - 0.0017 18.9 4.8 0.0053 17.3 0.9 3.1 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ATPgrasp_N PF18130.1 gi|159041238|ref|YP_001540490.1| - 0.002 18.6 0.1 0.023 15.3 0.2 2.6 2 0 0 2 2 2 1 ATP-grasp N-terminal domain FMO-like PF00743.19 gi|159041238|ref|YP_001540490.1| - 0.0033 15.9 0.1 0.0091 14.5 0.0 1.6 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like 3HCDH_N PF02737.18 gi|159041238|ref|YP_001540490.1| - 0.005 16.7 0.2 0.0097 15.8 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|159041238|ref|YP_001540490.1| - 0.022 13.8 0.1 0.043 12.9 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain TrkA_N PF02254.18 gi|159041238|ref|YP_001540490.1| - 0.024 14.9 1.3 0.16 12.3 1.3 2.3 1 1 0 1 1 1 0 TrkA-N domain ATPgrasp_YheCD PF14398.6 gi|159041238|ref|YP_001540490.1| - 0.063 12.5 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 YheC/D like ATP-grasp GIDA PF01134.22 gi|159041238|ref|YP_001540490.1| - 0.11 11.6 0.1 0.21 10.7 0.0 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A GATase_5 PF13507.6 gi|159041239|ref|YP_001540491.1| - 7.5e-37 126.8 0.0 4.1e-35 121.1 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|159041239|ref|YP_001540491.1| - 2.6e-10 40.4 0.0 3.7e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|159041239|ref|YP_001540491.1| - 1.2e-09 38.3 0.0 2.5e-09 37.2 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|159041239|ref|YP_001540491.1| - 1e-08 35.0 0.0 1.5e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|159041239|ref|YP_001540491.1| - 0.00062 19.6 0.0 0.00097 18.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|159041239|ref|YP_001540491.1| - 0.016 15.1 0.0 0.073 12.9 0.0 1.8 2 0 0 2 2 2 0 SNO glutamine amidotransferase family PurS PF02700.14 gi|159041240|ref|YP_001540492.1| - 3.6e-14 52.7 0.1 4.4e-14 52.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GARS_A PF01071.19 gi|159041241|ref|YP_001540493.1| - 3.1e-41 141.3 0.0 4.5e-41 140.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|159041241|ref|YP_001540493.1| - 8.3e-18 65.0 0.2 2.1e-17 63.7 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|159041241|ref|YP_001540493.1| - 1.2e-06 28.7 0.0 2.4e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|159041241|ref|YP_001540493.1| - 0.0022 17.3 0.0 0.0097 15.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|159041241|ref|YP_001540493.1| - 0.03 14.4 0.0 0.08 13.0 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|159041241|ref|YP_001540493.1| - 0.073 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|159041241|ref|YP_001540493.1| - 0.073 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain SAICAR_synt PF01259.18 gi|159041242|ref|YP_001540494.1| - 8.1e-50 169.8 0.0 9.9e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase AIRS_C PF02769.22 gi|159041243|ref|YP_001540495.1| - 2.4e-20 73.3 0.0 3.6e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|159041243|ref|YP_001540495.1| - 8.3e-13 48.8 0.5 2.5e-12 47.3 0.5 1.9 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1246 PF06849.12 gi|159041243|ref|YP_001540495.1| - 0.13 12.2 0.0 2.2 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) Pribosyltran PF00156.27 gi|159041244|ref|YP_001540496.1| - 4.9e-09 35.9 0.8 8.3e-09 35.2 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pox_L3_FP4 PF03339.14 gi|159041244|ref|YP_001540496.1| - 0.12 11.3 0.1 0.33 9.9 0.0 1.6 2 0 0 2 2 2 0 Poxvirus L3/FP4 protein GATase_7 PF13537.6 gi|159041245|ref|YP_001540497.1| - 3.3e-16 59.3 0.0 6.2e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|159041245|ref|YP_001540497.1| - 8.5e-15 55.1 0.0 1.7e-14 54.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|159041245|ref|YP_001540497.1| - 4.7e-06 26.2 0.1 1.5e-05 24.5 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|159041245|ref|YP_001540497.1| - 0.034 12.8 0.0 0.23 10.1 0.0 1.9 2 0 0 2 2 2 0 Glutamine amidotransferases class-II GTP_EFTU_D4 PF14578.6 gi|159041245|ref|YP_001540497.1| - 0.15 12.0 0.0 1.5 8.8 0.0 2.6 3 0 0 3 3 3 0 Elongation factor Tu domain 4 AIRS PF00586.24 gi|159041246|ref|YP_001540498.1| - 2.6e-43 146.6 0.2 3.2e-21 75.8 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|159041246|ref|YP_001540498.1| - 1e-42 145.9 3.5 2.7e-29 102.3 0.3 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|159041246|ref|YP_001540498.1| - 9.9e-11 42.0 0.1 2.3e-10 40.9 0.1 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRC PF00731.20 gi|159041247|ref|YP_001540499.1| - 7.6e-68 226.7 0.6 8.5e-68 226.6 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase DUF2334 PF10096.9 gi|159041247|ref|YP_001540499.1| - 0.18 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) ATP-grasp PF02222.22 gi|159041248|ref|YP_001540500.1| - 8.9e-51 171.9 0.0 1.3e-50 171.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|159041248|ref|YP_001540500.1| - 7.4e-19 67.2 0.0 1.7e-18 66.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|159041248|ref|YP_001540500.1| - 2.5e-06 27.6 0.0 4.2e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|159041248|ref|YP_001540500.1| - 0.0003 20.5 0.0 0.00055 19.6 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|159041248|ref|YP_001540500.1| - 0.0014 18.2 0.0 0.0034 16.9 0.0 1.7 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|159041248|ref|YP_001540500.1| - 0.01 15.3 0.1 0.023 14.2 0.1 1.6 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.19 gi|159041248|ref|YP_001540500.1| - 0.015 14.7 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sugar_tr PF00083.24 gi|159041250|ref|YP_001540502.1| - 4e-85 286.4 27.2 5.7e-85 285.9 27.2 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159041250|ref|YP_001540502.1| - 9e-21 74.2 36.5 9e-21 74.2 36.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159041250|ref|YP_001540502.1| - 9.3e-05 21.5 5.7 9.3e-05 21.5 5.7 2.7 2 2 1 3 3 3 1 MFS_1 like family Saf_2TM PF18303.1 gi|159041250|ref|YP_001540502.1| - 0.021 14.4 4.7 2 8.0 0.1 3.1 2 1 1 3 3 3 0 SAVED-fused 2TM effector domain YtxH PF12732.7 gi|159041250|ref|YP_001540502.1| - 0.64 10.6 0.1 0.64 10.6 0.1 2.1 2 0 0 2 2 2 0 YtxH-like protein 2-Hacid_dh_C PF02826.19 gi|159041251|ref|YP_001540503.1| - 3e-35 121.2 0.0 4.1e-35 120.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|159041251|ref|YP_001540503.1| - 1.6e-11 44.0 0.0 2e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DHquinase_I PF01487.15 gi|159041252|ref|YP_001540504.1| - 2.5e-19 70.5 0.0 3.5e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Ribosomal_L11 PF00298.19 gi|159041254|ref|YP_001540506.1| - 1.5e-14 54.3 0.1 2.9e-14 53.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|159041254|ref|YP_001540506.1| - 0.0028 17.4 0.1 0.0078 16.0 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain dsDNA_bind PF01984.20 gi|159041255|ref|YP_001540507.1| - 0.026 14.8 1.5 1 9.7 1.5 2.7 1 1 0 1 1 1 0 Double-stranded DNA-binding domain Ribosomal_L13e PF01294.18 gi|159041256|ref|YP_001540508.1| - 9.7e-13 48.4 0.3 1.8e-12 47.5 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|159041256|ref|YP_001540508.1| - 0.0013 18.5 1.1 0.0023 17.7 1.1 1.3 1 0 0 1 1 1 1 Ribosomal L15 MFS_1 PF07690.16 gi|159041257|ref|YP_001540509.1| - 1e-21 77.3 62.1 4.4e-12 45.6 32.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Ammonium_transp PF00909.21 gi|159041258|ref|YP_001540510.1| - 1.1e-90 304.2 27.6 1.3e-90 304.0 27.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DUF4395 PF14340.6 gi|159041258|ref|YP_001540510.1| - 0.00072 19.9 0.4 0.00072 19.9 0.4 4.4 4 3 1 5 5 5 1 Domain of unknown function (DUF4395) DUF2981 PF11200.8 gi|159041258|ref|YP_001540510.1| - 1.5 8.5 4.2 0.26 11.0 0.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2981) GFO_IDH_MocA PF01408.22 gi|159041259|ref|YP_001540511.1| - 3.2e-24 86.1 0.0 4.6e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041259|ref|YP_001540511.1| - 2.2e-10 40.6 0.0 3.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|159041259|ref|YP_001540511.1| - 0.00039 20.8 0.0 0.00071 20.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|159041259|ref|YP_001540511.1| - 0.0013 19.4 0.0 0.0018 18.9 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|159041259|ref|YP_001540511.1| - 0.066 13.9 0.0 0.12 13.0 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA PF01408.22 gi|159041260|ref|YP_001540512.1| - 9.2e-20 71.7 0.1 1.8e-19 70.8 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041260|ref|YP_001540512.1| - 4e-05 23.6 0.0 7.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|159041260|ref|YP_001540512.1| - 0.041 14.5 0.2 0.075 13.7 0.2 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain BPD_transp_1 PF00528.22 gi|159041261|ref|YP_001540513.1| - 1.2e-35 122.9 11.5 1.2e-35 122.9 11.5 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|159041262|ref|YP_001540514.1| - 9.1e-22 77.7 16.7 9.1e-22 77.7 16.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|159041262|ref|YP_001540514.1| - 1.8e-07 31.0 2.5 1.8e-07 31.0 2.5 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF5392 PF17370.2 gi|159041262|ref|YP_001540514.1| - 6.7 6.8 5.2 2.7 8.1 0.6 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5392) SBP_bac_5 PF00496.22 gi|159041263|ref|YP_001540515.1| - 2e-35 122.5 2.0 3.3e-35 121.7 2.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Internalin_N PF12354.8 gi|159041263|ref|YP_001540515.1| - 0.14 12.2 1.0 1.1 9.4 0.5 2.5 2 0 0 2 2 2 0 Bacterial adhesion/invasion protein N terminal RIFIN PF02009.16 gi|159041263|ref|YP_001540515.1| - 0.47 10.3 2.2 0.65 9.8 2.2 1.2 1 0 0 1 1 1 0 Rifin Aminotran_3 PF00202.21 gi|159041265|ref|YP_001540517.1| - 2.7e-123 411.6 0.0 3.4e-123 411.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DciA PF05258.12 gi|159041265|ref|YP_001540517.1| - 0.12 12.8 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 Dna[CI] antecedent, DciA DUF711 PF05167.12 gi|159041266|ref|YP_001540518.1| - 2.5e-34 118.9 0.1 1.7e-32 112.9 0.1 2.4 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) Maf PF02545.14 gi|159041266|ref|YP_001540518.1| - 0.087 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Maf-like protein DUF1577 PF07614.11 gi|159041267|ref|YP_001540519.1| - 0.074 12.1 0.0 4.4 6.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1577) Peptidase_M50 PF02163.22 gi|159041269|ref|YP_001540521.1| - 2.6e-08 33.4 9.8 0.00046 19.5 0.6 2.9 1 1 1 2 2 2 2 Peptidase family M50 DUF2516 PF10724.9 gi|159041269|ref|YP_001540521.1| - 0.23 11.8 0.0 0.23 11.8 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2516) BPD_transp_1 PF00528.22 gi|159041270|ref|YP_001540522.1| - 5.1e-33 114.4 16.9 5.1e-33 114.4 16.9 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|159041271|ref|YP_001540523.1| - 2.5e-24 86.1 20.0 2.5e-24 86.1 20.0 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|159041272|ref|YP_001540524.1| - 1.2e-26 93.9 0.0 1.8e-26 93.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159041272|ref|YP_001540524.1| - 2.9e-14 53.3 0.0 5.2e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|159041272|ref|YP_001540524.1| - 5.6e-10 39.5 2.7 9.4e-08 32.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041272|ref|YP_001540524.1| - 5.8e-07 29.2 0.2 4.5e-06 26.3 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|159041272|ref|YP_001540524.1| - 4e-06 27.1 0.5 0.0001 22.6 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|159041272|ref|YP_001540524.1| - 0.00011 21.9 0.0 0.00022 20.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|159041272|ref|YP_001540524.1| - 0.0007 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041272|ref|YP_001540524.1| - 0.0017 18.8 0.1 0.0036 17.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|159041272|ref|YP_001540524.1| - 0.0019 18.0 0.2 0.17 11.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|159041272|ref|YP_001540524.1| - 0.0023 17.7 0.0 0.17 11.5 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|159041272|ref|YP_001540524.1| - 0.0058 16.1 0.3 0.81 9.1 0.2 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_23 PF13476.6 gi|159041272|ref|YP_001540524.1| - 0.008 16.7 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|159041272|ref|YP_001540524.1| - 0.0084 16.0 0.1 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase Mg_chelatase PF01078.21 gi|159041272|ref|YP_001540524.1| - 0.025 14.0 0.1 0.14 11.5 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI CbiA PF01656.23 gi|159041272|ref|YP_001540524.1| - 0.027 14.5 0.0 0.052 13.6 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.22 gi|159041272|ref|YP_001540524.1| - 0.039 13.1 0.0 0.17 11.0 0.0 1.9 3 0 0 3 3 3 0 NB-ARC domain AAA_18 PF13238.6 gi|159041272|ref|YP_001540524.1| - 0.049 14.2 0.1 0.13 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|159041272|ref|YP_001540524.1| - 0.064 13.2 0.1 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|159041272|ref|YP_001540524.1| - 0.07 13.1 0.1 0.31 11.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|159041272|ref|YP_001540524.1| - 0.077 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_ATPase PF09818.9 gi|159041272|ref|YP_001540524.1| - 0.093 11.5 0.6 1.5 7.6 0.2 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ResIII PF04851.15 gi|159041272|ref|YP_001540524.1| - 0.12 12.3 0.0 0.35 10.8 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit APS_kinase PF01583.20 gi|159041272|ref|YP_001540524.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MeaB PF03308.16 gi|159041272|ref|YP_001540524.1| - 0.14 11.2 0.1 2.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|159041272|ref|YP_001540524.1| - 0.14 11.7 0.0 0.36 10.3 0.0 1.7 2 0 0 2 2 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|159041272|ref|YP_001540524.1| - 0.15 12.5 0.1 2 8.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4133 PF13571.6 gi|159041273|ref|YP_001540525.1| - 0.0013 19.0 0.4 0.0016 18.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4133) Holin_SPP1 PF04688.13 gi|159041273|ref|YP_001540525.1| - 0.0053 16.9 0.3 0.0062 16.7 0.3 1.1 1 0 0 1 1 1 1 SPP1 phage holin DUF4199 PF13858.6 gi|159041273|ref|YP_001540525.1| - 0.0097 16.3 1.5 0.011 16.1 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4199) DUF3165 PF11364.8 gi|159041273|ref|YP_001540525.1| - 0.027 14.8 2.2 0.043 14.1 2.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3165) DUF2207 PF09972.9 gi|159041273|ref|YP_001540525.1| - 0.16 10.7 1.5 0.18 10.5 1.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CcmD PF04995.14 gi|159041273|ref|YP_001540525.1| - 0.32 11.1 0.2 0.32 11.1 0.2 2.2 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) OPT PF03169.15 gi|159041273|ref|YP_001540525.1| - 0.57 8.7 4.8 0.62 8.6 4.8 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF3262 PF11660.8 gi|159041273|ref|YP_001540525.1| - 0.74 10.2 4.6 0.24 11.8 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3262) ADP_ribosyl_GH PF03747.14 gi|159041274|ref|YP_001540526.1| - 2e-28 100.0 0.0 3.6e-28 99.1 0.0 1.4 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Abhydrolase_1 PF00561.20 gi|159041275|ref|YP_001540527.1| - 5.5e-11 42.6 0.0 7.4e-10 38.9 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|159041275|ref|YP_001540527.1| - 1.3e-10 42.3 0.0 1.3e-07 32.5 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|159041275|ref|YP_001540527.1| - 6e-08 32.3 0.0 5.7e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 HMGL-like PF00682.19 gi|159041276|ref|YP_001540528.1| - 1.6e-42 145.9 0.0 2.2e-42 145.4 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|159041276|ref|YP_001540528.1| - 2.9e-22 79.0 0.2 3.3e-21 75.6 0.1 2.3 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Radical_SAM PF04055.21 gi|159041276|ref|YP_001540528.1| - 0.17 12.3 0.2 3.8 7.9 0.0 2.8 2 1 1 3 3 3 0 Radical SAM superfamily TIM PF00121.18 gi|159041277|ref|YP_001540529.1| - 1.9e-14 53.7 0.0 1.6e-12 47.3 0.0 2.1 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.14 gi|159041277|ref|YP_001540529.1| - 1.2e-06 28.0 1.7 2.2e-06 27.2 1.7 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|159041277|ref|YP_001540529.1| - 0.00016 20.9 0.2 0.00037 19.8 0.1 1.6 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|159041277|ref|YP_001540529.1| - 0.0013 18.2 2.3 0.0021 17.5 0.3 2.2 2 1 1 3 3 3 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|159041277|ref|YP_001540529.1| - 0.0027 16.8 0.5 0.0054 15.8 0.5 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|159041277|ref|YP_001540529.1| - 0.0069 15.8 0.7 0.013 14.9 0.3 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase PcrB PF01884.17 gi|159041277|ref|YP_001540529.1| - 0.04 13.4 2.9 0.19 11.2 0.9 2.4 3 0 0 3 3 3 0 PcrB family Hydrolase PF00702.26 gi|159041277|ref|YP_001540529.1| - 0.06 13.6 1.4 5.2 7.3 0.0 2.2 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Ribosomal_L27A PF00828.19 gi|159041278|ref|YP_001540530.1| - 1.9e-21 77.0 0.6 2.6e-21 76.6 0.6 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Pkinase PF00069.25 gi|159041279|ref|YP_001540531.1| - 1e-05 25.0 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|159041279|ref|YP_001540531.1| - 2.4e-05 24.4 0.1 0.0019 18.2 0.1 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|159041279|ref|YP_001540531.1| - 4.8e-05 22.8 0.0 0.00025 20.4 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|159041279|ref|YP_001540531.1| - 0.00013 21.6 0.0 0.00017 21.3 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase_fungal PF17667.1 gi|159041279|ref|YP_001540531.1| - 0.052 12.3 0.0 0.066 12.0 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase Nucleolin_bd PF16725.5 gi|159041279|ref|YP_001540531.1| - 0.057 13.1 0.8 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Nucleolin binding domain Nucleotid_trans PF03407.16 gi|159041279|ref|YP_001540531.1| - 0.072 13.1 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 Nucleotide-diphospho-sugar transferase WaaY PF06176.11 gi|159041279|ref|YP_001540531.1| - 0.075 12.6 0.6 0.71 9.4 0.1 2.2 1 1 1 2 2 2 0 Lipopolysaccharide core biosynthesis protein (WaaY) LRRFIP PF09738.9 gi|159041280|ref|YP_001540532.1| - 0.069 12.6 2.1 0.083 12.4 2.1 1.1 1 0 0 1 1 1 0 LRRFIP family DUF1894 PF08979.11 gi|159041280|ref|YP_001540532.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1894) Ribosomal_S5_C PF03719.15 gi|159041281|ref|YP_001540533.1| - 3.1e-22 77.8 0.0 1.1e-21 76.1 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|159041281|ref|YP_001540533.1| - 7.4e-21 73.9 0.5 1.4e-20 73.0 0.5 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain DUF3265 PF11665.8 gi|159041281|ref|YP_001540533.1| - 0.13 12.4 0.2 0.32 11.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3265) AP_endonuc_2 PF01261.24 gi|159041282|ref|YP_001540534.1| - 9.1e-10 38.3 0.0 1.4e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel FGGY_N PF00370.21 gi|159041283|ref|YP_001540535.1| - 1.4e-28 100.2 0.0 1.9e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|159041283|ref|YP_001540535.1| - 8.2e-26 90.9 0.0 1.3e-25 90.3 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Flavoprotein PF02441.19 gi|159041283|ref|YP_001540535.1| - 0.18 11.6 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 Flavoprotein AFOR_C PF01314.18 gi|159041284|ref|YP_001540536.1| - 3.7e-132 440.9 0.2 5.2e-132 440.5 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|159041284|ref|YP_001540536.1| - 3.2e-77 258.9 0.3 5.1e-77 258.2 0.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldolase_II PF00596.21 gi|159041285|ref|YP_001540537.1| - 4e-47 160.6 0.1 4.7e-47 160.3 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain AIRS PF00586.24 gi|159041285|ref|YP_001540537.1| - 0.018 15.7 1.0 0.07 13.8 0.5 2.0 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain Sugar_tr PF00083.24 gi|159041286|ref|YP_001540538.1| - 3.3e-67 227.3 32.1 4.1e-67 227.0 32.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159041286|ref|YP_001540538.1| - 9.3e-34 116.9 44.2 9.3e-34 116.9 44.2 1.9 1 1 0 2 2 2 1 Major Facilitator Superfamily HTH_20 PF12840.7 gi|159041287|ref|YP_001540539.1| - 1.2e-06 28.4 0.2 2e-06 27.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|159041287|ref|YP_001540539.1| - 3.8e-06 26.6 0.0 6.9e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_5 PF01022.20 gi|159041287|ref|YP_001540539.1| - 9.5e-05 22.2 0.2 0.00021 21.1 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|159041287|ref|YP_001540539.1| - 0.00013 21.7 0.1 0.00021 21.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|159041287|ref|YP_001540539.1| - 0.001 18.8 0.5 0.0023 17.7 0.5 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|159041287|ref|YP_001540539.1| - 0.0035 16.9 0.2 0.013 15.0 0.2 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|159041287|ref|YP_001540539.1| - 0.018 15.5 0.6 0.052 14.0 0.2 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|159041287|ref|YP_001540539.1| - 0.021 14.9 0.1 0.039 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|159041287|ref|YP_001540539.1| - 0.029 14.1 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|159041289|ref|YP_001540541.1| - 8.9e-18 64.1 0.4 1.2e-17 63.6 0.4 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.9 gi|159041289|ref|YP_001540541.1| - 0.004 17.7 0.1 0.0085 16.6 0.0 1.5 2 0 0 2 2 2 1 C-terminal AAA-associated domain HTH_IclR PF09339.10 gi|159041289|ref|YP_001540541.1| - 0.017 14.9 0.5 0.58 10.0 0.3 3.1 2 1 0 2 2 2 0 IclR helix-turn-helix domain Ribosomal_S19e PF01090.19 gi|159041289|ref|YP_001540541.1| - 0.053 13.2 0.0 0.07 12.8 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein S19e PEPCK_GTP PF00821.18 gi|159041290|ref|YP_001540542.1| - 2.5e-111 372.0 0.0 3.2e-111 371.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|159041290|ref|YP_001540542.1| - 1.4e-62 211.2 0.0 1.9e-62 210.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain Spt4 PF06093.13 gi|159041291|ref|YP_001540543.1| - 2.8e-17 62.6 0.2 4.2e-17 62.0 0.2 1.3 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_15 PF17032.5 gi|159041291|ref|YP_001540543.1| - 0.0011 19.7 0.4 0.0013 19.4 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|159041291|ref|YP_001540543.1| - 0.0044 17.0 1.0 0.0062 16.5 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_4 PF14570.6 gi|159041291|ref|YP_001540543.1| - 0.013 15.2 1.3 0.021 14.6 1.3 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zinc_ribbon_2 PF13240.6 gi|159041291|ref|YP_001540543.1| - 0.022 14.5 4.0 0.038 13.7 4.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|159041291|ref|YP_001540543.1| - 0.045 13.2 3.6 0.079 12.4 3.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|159041291|ref|YP_001540543.1| - 0.087 12.2 1.4 0.21 10.9 0.1 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger HTH_45 PF14947.6 gi|159041292|ref|YP_001540544.1| - 1.3e-26 92.3 0.1 1.5e-26 92.2 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.16 gi|159041292|ref|YP_001540544.1| - 0.0032 17.5 0.0 0.0057 16.7 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain Fe_dep_repress PF01325.19 gi|159041292|ref|YP_001540544.1| - 0.011 15.9 0.0 0.024 14.8 0.0 1.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain mCpol PF18182.1 gi|159041292|ref|YP_001540544.1| - 0.027 14.8 0.0 0.03 14.6 0.0 1.1 1 0 0 1 1 1 0 minimal CRISPR polymerase domain HTH_5 PF01022.20 gi|159041292|ref|YP_001540544.1| - 0.084 12.8 0.1 0.19 11.6 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|159041292|ref|YP_001540544.1| - 0.092 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TYW3 PF02676.14 gi|159041294|ref|YP_001540546.1| - 5.1e-33 114.2 0.0 1.6e-32 112.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase TYW3 Bul1_C PF04426.12 gi|159041294|ref|YP_001540546.1| - 0.025 14.0 0.0 0.035 13.5 0.0 1.1 1 0 0 1 1 1 0 Bul1 C terminus CobD_Cbib PF03186.13 gi|159041296|ref|YP_001540548.1| - 4.5e-63 213.1 1.7 5.2e-63 212.8 1.4 1.2 1 1 0 1 1 1 1 CobD/Cbib protein Ribosomal_L18 PF17135.4 gi|159041297|ref|YP_001540549.1| - 4.2e-13 49.1 0.1 4.5e-13 49.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|159041297|ref|YP_001540549.1| - 1.2e-09 39.0 1.9 2.1e-09 38.1 0.7 2.0 2 1 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Dimerisation PF08100.11 gi|159041297|ref|YP_001540549.1| - 0.13 12.3 0.0 0.52 10.4 0.0 1.9 2 0 0 2 2 2 0 Dimerisation domain 4HBT PF03061.22 gi|159041298|ref|YP_001540550.1| - 2.8e-21 75.7 1.8 1.5e-10 41.2 0.2 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.6 gi|159041298|ref|YP_001540550.1| - 0.0029 18.1 0.0 1.1 9.8 0.0 2.4 1 1 0 2 2 2 2 Thioesterase-like superfamily TatC PF00902.18 gi|159041299|ref|YP_001540551.1| - 1.3e-48 165.6 23.5 1.6e-48 165.3 23.5 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Metallophos_2 PF12850.7 gi|159041300|ref|YP_001540552.1| - 2.8e-09 37.4 0.0 4.1e-09 36.9 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|159041300|ref|YP_001540552.1| - 7.1e-07 29.9 0.2 1.5e-06 28.9 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase MoeA_N PF03453.17 gi|159041301|ref|YP_001540553.1| - 3.1e-29 101.8 0.0 7.1e-29 100.6 0.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|159041301|ref|YP_001540553.1| - 3.8e-11 42.8 0.0 6.2e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|159041301|ref|YP_001540553.1| - 4.5e-08 33.1 0.0 9.7e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Corona_M PF01635.18 gi|159041302|ref|YP_001540554.1| - 4.8 6.4 12.1 8 5.7 12.1 1.3 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein His_Phos_1 PF00300.22 gi|159041303|ref|YP_001540555.1| - 2.6e-38 131.7 0.0 2.9e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) DUF1884 PF08967.10 gi|159041303|ref|YP_001540555.1| - 0.019 15.2 0.1 0.036 14.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) DUF2757 PF10955.8 gi|159041304|ref|YP_001540556.1| - 0.06 13.6 0.1 0.77 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) Rubredoxin_2 PF18073.1 gi|159041304|ref|YP_001540556.1| - 0.096 12.4 6.1 1.5 8.7 0.8 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Homoserine_dh PF00742.19 gi|159041305|ref|YP_001540557.1| - 8.3e-39 133.3 0.2 1.1e-38 132.9 0.2 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_2 PF03446.15 gi|159041305|ref|YP_001540557.1| - 0.02 15.1 0.9 3.7 7.7 0.1 2.3 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|159041305|ref|YP_001540557.1| - 0.11 13.2 0.1 0.65 10.6 0.1 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IpaC_SipC PF09599.10 gi|159041305|ref|YP_001540557.1| - 0.18 11.3 0.1 0.23 10.9 0.1 1.1 1 0 0 1 1 1 0 Salmonella-Shigella invasin protein C (IpaC_SipC) CarS-like PF01864.17 gi|159041306|ref|YP_001540558.1| - 1.7e-40 138.9 1.0 2e-40 138.6 1.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|159041306|ref|YP_001540558.1| - 2.3e-06 27.6 0.3 3.7e-06 26.9 0.3 1.4 1 0 0 1 1 1 1 Cytidylyltransferase family DBI_PRT PF02277.17 gi|159041306|ref|YP_001540558.1| - 0.24 10.6 0.2 0.34 10.1 0.2 1.1 1 0 0 1 1 1 0 Phosphoribosyltransferase zf-Di19 PF05605.12 gi|159041307|ref|YP_001540559.1| - 4.6e-08 33.2 6.1 7.1e-06 26.2 0.7 2.9 3 0 0 3 3 3 2 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 gi|159041307|ref|YP_001540559.1| - 1e-07 32.1 6.2 0.27 11.8 0.0 4.4 4 0 0 4 4 4 2 Zinc-finger double domain zf-BED PF02892.15 gi|159041307|ref|YP_001540559.1| - 1.1e-06 28.5 7.2 0.1 12.7 0.1 4.0 3 1 1 4 4 4 2 BED zinc finger zf-met PF12874.7 gi|159041307|ref|YP_001540559.1| - 2.5e-06 27.7 8.8 0.0042 17.4 0.0 3.7 4 0 0 4 4 3 2 Zinc-finger of C2H2 type zf-C2H2_4 PF13894.6 gi|159041307|ref|YP_001540559.1| - 3.1e-06 27.5 11.2 0.96 10.5 0.1 4.4 4 1 0 4 4 4 2 C2H2-type zinc finger zf_UBZ PF18439.1 gi|159041307|ref|YP_001540559.1| - 1.1e-05 24.9 5.4 0.019 14.5 0.2 4.0 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|159041307|ref|YP_001540559.1| - 2.5e-05 24.5 17.1 0.021 15.3 0.1 4.8 4 1 0 4 4 4 2 Zinc finger, C2H2 type DZR PF12773.7 gi|159041307|ref|YP_001540559.1| - 7.9e-05 22.6 4.1 0.012 15.6 2.0 3.0 1 1 1 2 2 2 2 Double zinc ribbon CpXC PF14353.6 gi|159041307|ref|YP_001540559.1| - 0.00032 20.7 5.4 0.82 9.7 0.1 3.6 1 1 3 4 4 4 3 CpXC protein zf-Sec23_Sec24 PF04810.15 gi|159041307|ref|YP_001540559.1| - 0.00039 20.4 3.0 11 6.2 0.1 4.0 4 0 0 4 4 4 0 Sec23/Sec24 zinc finger zf_C2H2_13 PF18508.1 gi|159041307|ref|YP_001540559.1| - 0.00049 19.6 0.4 0.026 14.1 0.2 2.7 2 0 0 2 2 2 1 Zinc finger domain Zn-ribbon_8 PF09723.10 gi|159041307|ref|YP_001540559.1| - 0.00058 19.9 4.7 0.7 10.1 0.1 4.0 4 0 0 4 4 4 1 Zinc ribbon domain zf-UBP PF02148.19 gi|159041307|ref|YP_001540559.1| - 0.0019 18.5 10.4 0.019 15.3 3.5 3.1 2 1 1 3 3 2 1 Zn-finger in ubiquitin-hydrolases and other protein Zn_ribbon_SprT PF17283.2 gi|159041307|ref|YP_001540559.1| - 0.0026 17.6 10.6 0.68 9.9 0.1 3.6 3 1 0 3 3 2 2 SprT-like zinc ribbon domain zf-C2H2_2 PF12756.7 gi|159041307|ref|YP_001540559.1| - 0.0066 16.8 8.4 5 7.5 0.4 3.5 1 1 2 3 3 3 0 C2H2 type zinc-finger (2 copies) zf-C2H2_jaz PF12171.8 gi|159041307|ref|YP_001540559.1| - 0.0081 16.4 6.1 1.3 9.4 0.1 3.4 3 0 0 3 3 3 1 Zinc-finger double-stranded RNA-binding PRP21_like_P PF12230.8 gi|159041307|ref|YP_001540559.1| - 0.0098 15.8 0.1 0.0098 15.8 0.1 1.7 3 0 0 3 3 1 1 Pre-mRNA splicing factor PRP21 like protein zf-LITAF-like PF10601.9 gi|159041307|ref|YP_001540559.1| - 0.01 16.1 10.0 0.32 11.3 0.8 3.1 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-DNA_Pol PF08996.10 gi|159041307|ref|YP_001540559.1| - 0.034 13.9 1.1 0.12 12.1 0.3 2.0 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger Endonuclease_7 PF02945.15 gi|159041307|ref|YP_001540559.1| - 0.037 13.9 0.7 0.037 13.9 0.7 2.4 1 1 2 3 3 3 0 Recombination endonuclease VII TF_Zn_Ribbon PF08271.12 gi|159041307|ref|YP_001540559.1| - 0.041 13.4 8.0 0.6 9.7 0.1 3.6 4 0 0 4 4 4 0 TFIIB zinc-binding Sgf11 PF08209.11 gi|159041307|ref|YP_001540559.1| - 0.043 13.4 10.7 0.41 10.3 0.1 4.1 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) HypA PF01155.19 gi|159041307|ref|YP_001540559.1| - 0.049 13.7 3.8 0.35 10.9 4.2 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HNH PF01844.23 gi|159041307|ref|YP_001540559.1| - 0.064 13.4 5.3 5.6 7.2 0.2 3.8 4 0 0 4 4 4 0 HNH endonuclease DUF3268 PF11672.8 gi|159041307|ref|YP_001540559.1| - 0.076 13.3 5.5 0.17 12.2 0.6 2.5 2 1 1 3 3 2 0 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|159041307|ref|YP_001540559.1| - 0.079 12.4 0.2 0.079 12.4 0.2 3.6 4 0 0 4 4 4 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|159041307|ref|YP_001540559.1| - 0.1 12.6 7.5 2.7 8.0 2.9 3.5 3 1 0 3 3 3 0 Transposase zinc-ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|159041307|ref|YP_001540559.1| - 0.12 12.8 4.4 0.51 10.8 0.0 2.3 2 1 0 2 2 2 0 DnaJ central domain DUF1644 PF07800.12 gi|159041307|ref|YP_001540559.1| - 0.14 12.2 3.5 0.15 12.2 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1644) zf_C2H2_10 PF18414.1 gi|159041307|ref|YP_001540559.1| - 0.16 11.5 5.2 0.32 10.6 0.1 2.6 3 0 0 3 3 2 0 C2H2 type zinc-finger UPF0547 PF10571.9 gi|159041307|ref|YP_001540559.1| - 0.17 12.0 0.8 0.17 12.0 0.8 3.2 4 0 0 4 4 3 0 Uncharacterised protein family UPF0547 YacG PF03884.14 gi|159041307|ref|YP_001540559.1| - 0.17 11.6 4.8 1.4 8.7 0.2 3.1 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG HNH_5 PF14279.6 gi|159041307|ref|YP_001540559.1| - 0.19 11.6 4.5 2.4 8.1 0.1 3.1 2 1 1 3 3 3 0 HNH endonuclease zf-ISL3 PF14690.6 gi|159041307|ref|YP_001540559.1| - 0.19 12.4 0.8 0.19 12.4 0.8 3.2 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-WRNIP1_ubi PF18279.1 gi|159041307|ref|YP_001540559.1| - 0.22 12.3 7.8 2.3 9.0 0.1 3.5 3 0 0 3 3 3 0 Werner helicase-interacting protein 1 ubiquitin-binding domain DUF629 PF04780.12 gi|159041307|ref|YP_001540559.1| - 0.22 10.0 1.4 0.56 8.7 0.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF629) OrsD PF12013.8 gi|159041307|ref|YP_001540559.1| - 0.22 11.9 8.4 25 5.4 1.2 3.7 2 1 2 4 4 4 0 Orsellinic acid/F9775 biosynthesis cluster protein D ADK_lid PF05191.14 gi|159041307|ref|YP_001540559.1| - 0.23 11.5 10.1 0.54 10.3 0.1 3.8 4 0 0 4 4 4 0 Adenylate kinase, active site lid RNHCP PF12647.7 gi|159041307|ref|YP_001540559.1| - 0.24 11.4 4.5 6.4 6.8 0.1 3.0 2 1 1 3 3 3 0 RNHCP domain zf-C2HC_2 PF13913.6 gi|159041307|ref|YP_001540559.1| - 0.29 11.1 0.2 0.29 11.1 0.2 3.5 4 0 0 4 4 3 0 zinc-finger of a C2HC-type FYDLN_acid PF09538.10 gi|159041307|ref|YP_001540559.1| - 0.3 11.8 3.7 0.69 10.6 0.5 2.9 2 1 1 3 3 3 0 Protein of unknown function (FYDLN_acid) zinc-ribbons_6 PF07191.12 gi|159041307|ref|YP_001540559.1| - 0.31 11.1 7.9 0.65 10.0 4.3 2.9 1 1 2 3 3 3 0 zinc-ribbons zinc_ribbon_15 PF17032.5 gi|159041307|ref|YP_001540559.1| - 0.36 11.6 5.4 1.7 9.4 2.8 2.7 1 1 1 2 2 2 0 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|159041307|ref|YP_001540559.1| - 0.38 10.5 0.1 0.38 10.5 0.1 3.2 4 0 0 4 4 3 0 zinc-ribbon domain zf-CHY PF05495.12 gi|159041307|ref|YP_001540559.1| - 0.42 11.1 6.4 1.1 9.8 0.4 2.7 1 1 2 3 3 3 0 CHY zinc finger C1_2 PF03107.16 gi|159041307|ref|YP_001540559.1| - 0.42 11.0 6.7 14 6.1 1.7 3.8 3 1 0 3 3 3 0 C1 domain zf-NADH-PPase PF09297.11 gi|159041307|ref|YP_001540559.1| - 0.43 10.3 7.1 12 5.7 0.2 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zf-CpG_bind_C PF12269.8 gi|159041307|ref|YP_001540559.1| - 0.59 9.9 4.1 1.9 8.2 0.2 2.6 1 1 2 3 3 3 0 CpG binding protein zinc finger C terminal domain zf-nanos PF05741.13 gi|159041307|ref|YP_001540559.1| - 0.75 10.1 10.1 10 6.5 0.1 3.8 4 1 0 4 4 3 0 Nanos RNA binding domain zf-ZPR1 PF03367.13 gi|159041307|ref|YP_001540559.1| - 0.97 9.3 5.8 2.4 8.0 0.5 2.3 1 1 1 2 2 2 0 ZPR1 zinc-finger domain Vps36-NZF-N PF16988.5 gi|159041307|ref|YP_001540559.1| - 1.3 8.4 12.1 0.44 10.0 2.1 3.1 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Actin_micro PF17003.5 gi|159041307|ref|YP_001540559.1| - 1.6 7.8 3.9 38 3.3 3.9 2.7 1 1 0 1 1 1 0 Putative actin-like family zinc_ribbon_9 PF14369.6 gi|159041307|ref|YP_001540559.1| - 1.8 8.9 5.3 7.8 6.9 0.1 3.1 4 0 0 4 4 3 0 zinc-ribbon zf-Mss51 PF13824.6 gi|159041307|ref|YP_001540559.1| - 1.8 8.7 5.4 0.83 9.8 0.3 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|159041307|ref|YP_001540559.1| - 2 8.3 11.8 8 6.4 0.1 3.9 4 0 0 4 4 4 0 HIT zinc finger FdhE PF04216.12 gi|159041307|ref|YP_001540559.1| - 2.5 7.9 6.1 0.28 11.0 1.0 1.8 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation OrfB_Zn_ribbon PF07282.11 gi|159041307|ref|YP_001540559.1| - 2.7 8.0 7.4 1.8 8.5 1.6 3.0 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|159041307|ref|YP_001540559.1| - 2.9 7.9 12.8 12 5.9 4.7 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|159041307|ref|YP_001540559.1| - 4.2 7.3 6.3 4.2 7.3 3.4 2.4 2 1 0 2 2 2 0 Cysteine-rich KTR zf-piccolo PF05715.13 gi|159041307|ref|YP_001540559.1| - 4.4 7.5 8.2 25 5.1 4.3 3.0 2 1 1 3 3 3 0 Piccolo Zn-finger CxC4 PF18717.1 gi|159041307|ref|YP_001540559.1| - 5.6 6.8 6.5 5.3 6.9 1.0 2.7 1 1 1 3 3 3 0 CxC4 like cysteine cluster associated with KDZ transposases Prok-RING_1 PF14446.6 gi|159041307|ref|YP_001540559.1| - 7.5 6.6 11.9 34 4.5 0.3 3.9 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 DUF998 PF06197.13 gi|159041308|ref|YP_001540560.1| - 1e-30 106.7 17.8 1.2e-30 106.5 17.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) L6_membrane PF05805.12 gi|159041308|ref|YP_001540560.1| - 0.18 11.3 4.0 0.51 9.9 3.9 1.8 1 1 0 1 1 1 0 L6 membrane protein Internalin_N PF12354.8 gi|159041308|ref|YP_001540560.1| - 1.9 8.7 4.3 0.79 9.8 0.4 2.3 2 1 1 3 3 3 0 Bacterial adhesion/invasion protein N terminal CYTH PF01928.21 gi|159041309|ref|YP_001540561.1| - 1.2e-30 106.8 0.1 1.3e-30 106.6 0.1 1.0 1 0 0 1 1 1 1 CYTH domain DUF1246 PF06849.12 gi|159041309|ref|YP_001540561.1| - 0.014 15.4 0.1 0.42 10.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) MFS_1 PF07690.16 gi|159041310|ref|YP_001540562.1| - 2.8e-21 75.9 33.6 2.8e-21 75.9 33.6 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159041310|ref|YP_001540562.1| - 0.0016 17.4 2.2 0.0016 17.4 2.2 2.7 2 2 0 2 2 2 2 MFS_1 like family ABC_tran PF00005.27 gi|159041311|ref|YP_001540563.1| - 1.3e-28 100.2 0.0 1.8e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041311|ref|YP_001540563.1| - 2.8e-11 43.8 1.2 2e-05 24.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041311|ref|YP_001540563.1| - 0.0019 17.7 0.3 1.5 8.2 0.0 2.4 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|159041311|ref|YP_001540563.1| - 0.0028 17.9 0.2 0.028 14.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159041311|ref|YP_001540563.1| - 0.0034 17.8 0.0 0.014 15.8 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|159041311|ref|YP_001540563.1| - 0.0068 16.2 0.0 1.1 8.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|159041311|ref|YP_001540563.1| - 0.018 15.6 0.1 0.028 14.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|159041311|ref|YP_001540563.1| - 0.018 14.7 0.1 0.028 14.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|159041311|ref|YP_001540563.1| - 0.025 14.4 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal AAA_29 PF13555.6 gi|159041311|ref|YP_001540563.1| - 0.031 14.0 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain G3P_antiterm PF04309.12 gi|159041311|ref|YP_001540563.1| - 0.049 13.0 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF3584 PF12128.8 gi|159041311|ref|YP_001540563.1| - 0.052 11.1 0.0 0.069 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SRP54 PF00448.22 gi|159041311|ref|YP_001540563.1| - 0.073 12.7 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.7 gi|159041311|ref|YP_001540563.1| - 0.14 11.1 0.3 1.7 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain NTPase_1 PF03266.15 gi|159041311|ref|YP_001540563.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 NTPase Rop PF01815.16 gi|159041311|ref|YP_001540563.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Rop protein AAA_27 PF13514.6 gi|159041311|ref|YP_001540563.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|159041312|ref|YP_001540564.1| - 2.3e-37 128.6 0.2 6.3e-18 65.6 0.0 3.1 2 1 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|159041312|ref|YP_001540564.1| - 4.7e-15 55.1 3.3 1.2e-14 53.8 3.3 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|159041312|ref|YP_001540564.1| - 1.5e-11 44.2 2.6 0.0003 20.3 0.0 3.6 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|159041312|ref|YP_001540564.1| - 7.2e-11 42.4 5.8 0.0017 18.2 0.1 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|159041312|ref|YP_001540564.1| - 5.1e-07 29.2 3.2 5.1e-07 29.2 3.2 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041312|ref|YP_001540564.1| - 1e-05 25.5 7.5 1.8e-05 24.8 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159041312|ref|YP_001540564.1| - 5.8e-05 23.0 12.6 0.0017 18.3 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.29 gi|159041312|ref|YP_001540564.1| - 0.00011 22.6 0.2 0.1 13.0 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RecA PF00154.21 gi|159041312|ref|YP_001540564.1| - 0.00038 20.0 0.1 0.0097 15.4 0.0 2.3 2 0 0 2 2 2 1 recA bacterial DNA recombination protein Fer4_10 PF13237.6 gi|159041312|ref|YP_001540564.1| - 0.00051 20.1 10.2 0.0008 19.5 9.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|159041312|ref|YP_001540564.1| - 0.00088 19.7 0.1 0.14 12.5 0.0 2.7 2 2 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|159041312|ref|YP_001540564.1| - 0.0014 18.4 0.2 1.1 9.0 0.0 3.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|159041312|ref|YP_001540564.1| - 0.0014 18.4 0.1 0.28 10.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|159041312|ref|YP_001540564.1| - 0.0044 17.2 0.2 0.24 11.6 0.0 3.2 2 2 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|159041312|ref|YP_001540564.1| - 0.006 16.5 0.1 2.8 7.8 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase Fer4_9 PF13187.6 gi|159041312|ref|YP_001540564.1| - 0.015 15.4 8.7 0.021 15.0 2.7 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159041312|ref|YP_001540564.1| - 0.019 15.1 3.5 0.019 15.1 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|159041312|ref|YP_001540564.1| - 0.025 15.5 4.5 0.055 14.4 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_25 PF13481.6 gi|159041312|ref|YP_001540564.1| - 0.027 14.0 0.5 7.5 6.1 0.0 3.3 3 1 0 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|159041312|ref|YP_001540564.1| - 0.027 15.0 0.2 8 6.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|159041312|ref|YP_001540564.1| - 0.05 13.6 1.0 7.5 6.6 0.0 3.3 4 0 0 4 4 3 0 AAA domain AAA_15 PF13175.6 gi|159041312|ref|YP_001540564.1| - 0.053 13.2 3.0 2.1 8.0 0.3 2.9 3 0 0 3 3 3 0 AAA ATPase domain NACHT PF05729.12 gi|159041312|ref|YP_001540564.1| - 0.061 13.2 0.2 0.31 10.9 0.0 2.2 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|159041312|ref|YP_001540564.1| - 0.074 13.4 0.0 3.2 8.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.6 gi|159041312|ref|YP_001540564.1| - 0.091 13.3 0.1 8.7 6.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|159041312|ref|YP_001540564.1| - 0.11 12.6 0.2 20 5.3 0.1 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|159041312|ref|YP_001540564.1| - 0.12 12.7 0.2 2.8 8.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|159041312|ref|YP_001540564.1| - 0.27 11.2 1.9 1.3 9.1 0.1 2.7 2 1 1 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fer4_7 PF12838.7 gi|159041312|ref|YP_001540564.1| - 0.35 11.5 11.2 0.079 13.6 3.0 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain NB-ARC PF00931.22 gi|159041312|ref|YP_001540564.1| - 0.45 9.7 2.9 4.3 6.5 0.1 2.7 3 0 0 3 3 3 0 NB-ARC domain Fer4_17 PF13534.6 gi|159041312|ref|YP_001540564.1| - 0.67 10.5 7.9 3.5 8.2 7.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159041312|ref|YP_001540564.1| - 1.5 9.5 13.2 0.46 11.1 3.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|159041312|ref|YP_001540564.1| - 3.2 8.3 7.6 15 6.2 7.6 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain dCMP_cyt_deam_1 PF00383.23 gi|159041314|ref|YP_001540566.1| - 1.2e-15 57.2 0.1 1.4e-15 57.0 0.1 1.0 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|159041314|ref|YP_001540566.1| - 9e-08 32.4 0.2 1.5e-07 31.7 0.2 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|159041314|ref|YP_001540566.1| - 0.076 12.6 1.1 1.4 8.5 0.0 2.1 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases Sugar_tr PF00083.24 gi|159041315|ref|YP_001540567.1| - 8.8e-09 34.7 24.3 8.4e-05 21.6 16.7 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|159041315|ref|YP_001540567.1| - 5.8e-08 32.1 20.1 5.8e-08 32.1 20.1 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF1449 PF07290.11 gi|159041315|ref|YP_001540567.1| - 1.3 8.6 7.2 0.16 11.6 1.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1449) Rib_5-P_isom_A PF06026.14 gi|159041316|ref|YP_001540568.1| - 4.8e-58 195.6 0.0 5.6e-58 195.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|159041316|ref|YP_001540568.1| - 5.2e-05 23.2 0.1 0.0033 17.4 0.0 2.1 2 0 0 2 2 2 2 DeoR C terminal sensor domain DDR_swiveling PF18427.1 gi|159041316|ref|YP_001540568.1| - 0.15 12.1 0.4 0.35 10.9 0.3 1.7 1 1 0 1 1 1 0 DD-reactivating factor swiveling domain Flavoprotein PF02441.19 gi|159041317|ref|YP_001540569.1| - 3.7e-27 95.0 0.1 4.5e-27 94.7 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein Pribosyltran PF00156.27 gi|159041318|ref|YP_001540570.1| - 3.4e-26 91.7 0.0 4.3e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|159041318|ref|YP_001540570.1| - 0.00031 20.3 0.1 0.00041 19.8 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF309 PF03745.14 gi|159041319|ref|YP_001540571.1| - 5.2e-15 54.9 0.1 1e-14 54.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Band_7_C PF16200.5 gi|159041319|ref|YP_001540571.1| - 0.12 12.5 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 C-terminal region of band_7 tRNA-synt_2 PF00152.20 gi|159041320|ref|YP_001540572.1| - 2.8e-78 263.2 0.0 3.4e-78 262.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|159041320|ref|YP_001540572.1| - 4e-10 39.5 2.0 6.9e-10 38.8 2.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|159041320|ref|YP_001540572.1| - 7.9e-05 22.3 0.8 0.092 12.2 0.1 2.5 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Sec66 PF09802.9 gi|159041320|ref|YP_001540572.1| - 0.037 13.6 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 Preprotein translocase subunit Sec66 GFO_IDH_MocA PF01408.22 gi|159041321|ref|YP_001540573.1| - 1.1e-28 100.4 0.1 2e-28 99.7 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041321|ref|YP_001540573.1| - 0.014 15.4 0.0 0.033 14.2 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|159041321|ref|YP_001540573.1| - 0.015 16.0 0.2 0.039 14.6 0.2 1.7 1 0 0 1 1 1 0 CoA binding domain DUF884 PF05959.11 gi|159041321|ref|YP_001540573.1| - 0.17 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF884) DUF2204 PF09970.9 gi|159041322|ref|YP_001540574.1| - 2.6e-64 216.2 0.3 3e-64 216.0 0.3 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) AAA PF00004.29 gi|159041324|ref|YP_001540576.1| - 8.4e-16 58.6 0.0 5.2e-15 56.0 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|159041324|ref|YP_001540576.1| - 1.6e-13 50.7 0.0 6.1e-10 39.1 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|159041324|ref|YP_001540576.1| - 2.3e-09 37.5 0.0 6.8e-09 36.0 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_16 PF13191.6 gi|159041324|ref|YP_001540576.1| - 4.5e-07 30.4 0.0 0.00022 21.6 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|159041324|ref|YP_001540576.1| - 5.9e-07 29.4 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|159041324|ref|YP_001540576.1| - 1.6e-06 27.9 0.0 3.7e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|159041324|ref|YP_001540576.1| - 1.8e-06 28.3 0.1 0.0046 17.2 0.1 2.7 2 1 0 2 2 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|159041324|ref|YP_001540576.1| - 5.8e-06 26.6 0.3 7.1e-05 23.1 0.1 2.4 2 1 1 3 3 2 1 AAA C-terminal domain AAA_14 PF13173.6 gi|159041324|ref|YP_001540576.1| - 1.7e-05 24.9 0.0 2.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|159041324|ref|YP_001540576.1| - 2.9e-05 23.9 0.0 6.2e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|159041324|ref|YP_001540576.1| - 4e-05 23.3 0.1 0.00025 20.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|159041324|ref|YP_001540576.1| - 0.00056 20.5 0.0 0.0018 18.8 0.0 1.8 1 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|159041324|ref|YP_001540576.1| - 0.00099 19.1 0.1 0.012 15.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|159041324|ref|YP_001540576.1| - 0.0012 18.7 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DNA_pol3_gamma3 PF12169.8 gi|159041324|ref|YP_001540576.1| - 0.0027 17.6 0.0 0.033 14.1 0.0 2.4 2 1 0 2 2 2 1 DNA polymerase III subunits gamma and tau domain III RNA_helicase PF00910.22 gi|159041324|ref|YP_001540576.1| - 0.0029 18.0 0.0 0.0071 16.7 0.0 1.8 1 1 0 1 1 1 1 RNA helicase MeaB PF03308.16 gi|159041324|ref|YP_001540576.1| - 0.0046 16.0 0.2 0.03 13.3 0.0 2.3 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|159041324|ref|YP_001540576.1| - 0.0049 17.0 0.0 0.019 15.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain DEAD PF00270.29 gi|159041324|ref|YP_001540576.1| - 0.0087 15.8 1.7 0.21 11.4 0.0 2.8 2 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|159041324|ref|YP_001540576.1| - 0.0095 15.7 0.0 0.031 14.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|159041324|ref|YP_001540576.1| - 0.012 15.0 0.0 0.15 11.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|159041324|ref|YP_001540576.1| - 0.012 15.5 0.0 0.57 10.1 0.0 2.5 1 1 2 3 3 3 0 ATPase domain predominantly from Archaea DNA_pol3_delta PF06144.13 gi|159041324|ref|YP_001540576.1| - 0.016 15.0 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_7 PF12775.7 gi|159041324|ref|YP_001540576.1| - 0.02 14.4 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Ribosomal_L9_C PF03948.14 gi|159041324|ref|YP_001540576.1| - 0.027 14.9 0.0 0.066 13.7 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain Viral_helicase1 PF01443.18 gi|159041324|ref|YP_001540576.1| - 0.034 13.9 0.0 0.051 13.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|159041324|ref|YP_001540576.1| - 0.037 13.5 0.1 7 6.1 0.0 2.5 3 0 0 3 3 3 0 PhoH-like protein AAA_28 PF13521.6 gi|159041324|ref|YP_001540576.1| - 0.043 14.1 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain TniB PF05621.11 gi|159041324|ref|YP_001540576.1| - 0.05 13.0 0.0 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein AAA_11 PF13086.6 gi|159041324|ref|YP_001540576.1| - 0.05 13.4 0.0 0.22 11.3 0.0 1.8 2 1 1 3 3 2 0 AAA domain AAA_17 PF13207.6 gi|159041324|ref|YP_001540576.1| - 0.07 13.6 0.1 0.17 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|159041324|ref|YP_001540576.1| - 0.12 12.4 0.0 0.95 9.4 0.0 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|159041324|ref|YP_001540576.1| - 0.16 11.9 0.0 2.5 8.0 0.0 2.3 1 1 0 1 1 1 0 NACHT domain Lactamase_B_3 PF13483.6 gi|159041325|ref|YP_001540577.1| - 2.6e-07 30.7 0.0 5e-07 29.7 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|159041325|ref|YP_001540577.1| - 4.1e-06 26.4 0.0 8.7e-06 25.4 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|159041325|ref|YP_001540577.1| - 0.00027 21.0 0.0 0.00066 19.7 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Cren7 PF11520.8 gi|159041326|ref|YP_001540578.1| - 4.9e-18 64.8 1.0 5.9e-18 64.5 1.0 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 OMPdecase PF00215.24 gi|159041327|ref|YP_001540579.1| - 5.7e-14 52.3 0.0 8.1e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Polbeta PF18765.1 gi|159041327|ref|YP_001540579.1| - 0.01 15.9 0.0 0.054 13.6 0.0 2.0 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase TauE PF01925.19 gi|159041329|ref|YP_001540581.1| - 2.6e-47 161.5 40.7 2.9e-47 161.3 40.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1304 PF06993.12 gi|159041329|ref|YP_001540581.1| - 0.022 14.7 0.1 0.022 14.7 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1304) DUF2206 PF09971.9 gi|159041329|ref|YP_001540581.1| - 0.2 10.4 3.8 0.064 12.0 1.4 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2206) Tail_VII PF17091.5 gi|159041329|ref|YP_001540581.1| - 1.1 9.2 13.0 1.3 8.9 2.5 3.5 2 0 0 2 2 2 0 Inovirus G7P protein Glycos_transf_1 PF00534.20 gi|159041330|ref|YP_001540582.1| - 5.9e-10 38.9 0.1 7.9e-09 35.3 0.1 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159041330|ref|YP_001540582.1| - 2.9e-08 34.2 0.0 5.9e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159041330|ref|YP_001540582.1| - 0.0015 18.9 0.1 0.0024 18.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peripla_BP_2 PF01497.18 gi|159041331|ref|YP_001540583.1| - 2.4e-13 50.2 0.0 3.5e-13 49.7 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein MFS_1 PF07690.16 gi|159041333|ref|YP_001540585.1| - 5.3e-22 78.2 58.6 1.6e-12 47.0 27.7 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159041333|ref|YP_001540585.1| - 1.1e-21 77.2 33.6 8.9e-16 57.8 12.0 2.7 1 1 1 2 2 2 2 Sugar (and other) transporter SUI1 PF01253.22 gi|159041334|ref|YP_001540586.1| - 7.5e-18 64.8 0.3 1.2e-17 64.2 0.3 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|159041334|ref|YP_001540586.1| - 0.011 16.0 0.2 0.016 15.5 0.2 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) ABC_tran PF00005.27 gi|159041336|ref|YP_001540588.1| - 2.2e-25 89.8 0.0 3.5e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041336|ref|YP_001540588.1| - 3.9e-09 36.7 0.2 0.0024 17.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 gi|159041336|ref|YP_001540588.1| - 0.00048 19.8 0.4 0.0011 18.6 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|159041336|ref|YP_001540588.1| - 0.00055 20.5 0.0 0.0011 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|159041336|ref|YP_001540588.1| - 0.0011 18.7 0.1 0.0018 18.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|159041336|ref|YP_001540588.1| - 0.0017 18.1 0.1 0.0036 17.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|159041336|ref|YP_001540588.1| - 0.0018 18.1 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal SMC_N PF02463.19 gi|159041336|ref|YP_001540588.1| - 0.0019 17.7 0.1 0.83 9.0 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|159041336|ref|YP_001540588.1| - 0.002 17.8 0.1 0.0039 16.8 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|159041336|ref|YP_001540588.1| - 0.0031 17.9 0.1 0.024 15.1 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|159041336|ref|YP_001540588.1| - 0.0062 16.9 0.1 0.013 15.9 0.0 1.7 2 1 0 2 2 1 1 AAA ATPase domain TsaE PF02367.17 gi|159041336|ref|YP_001540588.1| - 0.013 15.5 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|159041336|ref|YP_001540588.1| - 0.02 14.6 0.0 0.055 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|159041336|ref|YP_001540588.1| - 0.023 15.0 0.0 0.062 13.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|159041336|ref|YP_001540588.1| - 0.023 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|159041336|ref|YP_001540588.1| - 0.047 13.6 0.2 0.25 11.2 0.0 2.2 3 1 0 3 3 3 0 NTPase RsgA_GTPase PF03193.16 gi|159041336|ref|YP_001540588.1| - 0.05 13.5 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|159041336|ref|YP_001540588.1| - 0.051 13.3 0.1 0.69 9.6 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|159041336|ref|YP_001540588.1| - 0.051 13.7 0.1 0.16 12.1 0.1 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|159041336|ref|YP_001540588.1| - 0.082 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|159041336|ref|YP_001540588.1| - 0.087 12.9 0.0 0.63 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|159041336|ref|YP_001540588.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|159041336|ref|YP_001540588.1| - 0.16 11.5 0.2 0.83 9.2 0.0 2.1 3 0 0 3 3 2 0 AAA domain Zeta_toxin PF06414.12 gi|159041336|ref|YP_001540588.1| - 0.16 11.2 0.1 0.59 9.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|159041336|ref|YP_001540588.1| - 0.19 11.6 0.1 0.36 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|159041336|ref|YP_001540588.1| - 0.22 10.7 0.1 0.38 9.9 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF3584 PF12128.8 gi|159041336|ref|YP_001540588.1| - 0.27 8.7 0.1 0.38 8.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane PF01061.24 gi|159041337|ref|YP_001540589.1| - 8.8e-15 54.7 32.6 3.2e-14 52.9 25.3 2.1 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|159041337|ref|YP_001540589.1| - 9.6e-08 31.5 32.5 1.7e-07 30.7 31.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein Arginosuc_synth PF00764.19 gi|159041338|ref|YP_001540590.1| - 5.8e-134 447.2 0.0 6.8e-134 447.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase PolyA_pol_RNAbd PF12627.7 gi|159041338|ref|YP_001540590.1| - 0.045 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A Lyase_1 PF00206.20 gi|159041339|ref|YP_001540591.1| - 5.7e-37 127.8 0.0 8.5e-37 127.2 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|159041339|ref|YP_001540591.1| - 0.017 15.9 0.0 0.059 14.1 0.0 2.0 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal Aminotran_3 PF00202.21 gi|159041340|ref|YP_001540592.1| - 2e-106 356.1 0.0 2.6e-106 355.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|159041340|ref|YP_001540592.1| - 0.041 12.8 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V SfsA PF03749.13 gi|159041341|ref|YP_001540593.1| - 1.6e-41 141.4 0.0 2.5e-41 140.8 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|159041341|ref|YP_001540593.1| - 2.2e-12 46.9 0.0 4.7e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain NucS PF01939.16 gi|159041341|ref|YP_001540593.1| - 0.0036 16.7 0.0 0.0053 16.1 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|159041341|ref|YP_001540593.1| - 0.082 13.2 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 MacB_PCD PF12704.7 gi|159041343|ref|YP_001540595.1| - 5.1e-10 40.0 8.8 5.1e-10 40.0 8.8 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|159041343|ref|YP_001540595.1| - 1.3e-09 38.4 11.5 1.3e-09 38.4 11.5 4.0 3 2 1 4 4 4 2 FtsX-like permease family DUF348 PF03990.14 gi|159041343|ref|YP_001540595.1| - 0.027 14.2 1.3 6.1 6.7 0.0 2.6 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain CARDB PF07705.11 gi|159041344|ref|YP_001540596.1| - 5.4e-06 26.6 25.3 0.00032 20.9 1.2 6.1 5 1 2 7 7 7 3 CARDB N_BRCA1_IG PF16158.5 gi|159041344|ref|YP_001540596.1| - 0.00018 22.2 0.0 0.24 12.1 0.0 4.2 4 0 0 4 4 4 1 Ig-like domain from next to BRCA1 gene NPCBM_assoc PF10633.9 gi|159041344|ref|YP_001540596.1| - 0.0004 20.6 3.2 0.97 9.7 0.0 5.2 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase MG2 PF01835.19 gi|159041344|ref|YP_001540596.1| - 0.011 16.1 0.0 5.5 7.5 0.0 4.2 4 0 0 4 4 4 0 MG2 domain DUF11 PF01345.18 gi|159041344|ref|YP_001540596.1| - 0.021 15.1 0.9 0.021 15.1 0.9 7.0 5 2 0 5 5 5 0 Domain of unknown function DUF11 fn3 PF00041.21 gi|159041344|ref|YP_001540596.1| - 0.026 14.9 0.2 1.7 9.0 0.0 3.4 2 0 0 2 2 2 0 Fibronectin type III domain Transglut_C PF00927.22 gi|159041344|ref|YP_001540596.1| - 0.043 13.9 5.3 1.4 9.1 0.0 4.5 5 1 0 5 5 5 0 Transglutaminase family, C-terminal ig like domain ECSCR PF15820.5 gi|159041344|ref|YP_001540596.1| - 0.15 11.9 3.2 0.38 10.6 2.0 2.3 2 0 0 2 2 2 0 Endothelial cell-specific chemotaxis regulator TRAP_beta PF05753.14 gi|159041344|ref|YP_001540596.1| - 8.4 5.7 6.7 10 5.4 0.1 3.3 3 1 0 3 3 3 0 Translocon-associated protein beta (TRAPB) ABC_tran PF00005.27 gi|159041345|ref|YP_001540597.1| - 3.1e-29 102.2 0.0 4.1e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041345|ref|YP_001540597.1| - 1.6e-09 38.0 0.4 0.0014 18.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041345|ref|YP_001540597.1| - 2.6e-05 23.8 0.0 0.062 12.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|159041345|ref|YP_001540597.1| - 0.00031 20.9 0.1 0.013 15.7 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|159041345|ref|YP_001540597.1| - 0.002 17.8 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|159041345|ref|YP_001540597.1| - 0.0024 17.5 0.1 0.1 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|159041345|ref|YP_001540597.1| - 0.0035 17.6 1.0 0.038 14.3 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|159041345|ref|YP_001540597.1| - 0.01 16.0 0.0 0.021 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|159041345|ref|YP_001540597.1| - 0.014 15.1 0.0 0.063 13.0 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|159041345|ref|YP_001540597.1| - 0.038 13.7 0.1 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|159041345|ref|YP_001540597.1| - 0.051 13.3 0.0 2 8.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoH PF02562.16 gi|159041345|ref|YP_001540597.1| - 0.058 12.9 0.0 0.42 10.0 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_16 PF13191.6 gi|159041345|ref|YP_001540597.1| - 0.063 13.7 0.4 0.15 12.4 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|159041345|ref|YP_001540597.1| - 0.072 13.6 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|159041345|ref|YP_001540597.1| - 0.089 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|159041345|ref|YP_001540597.1| - 0.13 10.9 0.0 3.6 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|159041345|ref|YP_001540597.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|159041345|ref|YP_001540597.1| - 0.19 11.6 0.1 0.35 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain tRNA_deacylase PF04414.12 gi|159041346|ref|YP_001540598.1| - 1.7e-55 187.7 0.0 2.1e-55 187.4 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase TusA PF01206.17 gi|159041348|ref|YP_001540600.1| - 8.2e-21 73.6 0.1 9.7e-21 73.4 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|159041349|ref|YP_001540601.1| - 2.1e-07 30.9 0.1 3.3e-07 30.3 0.1 1.4 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|159041349|ref|YP_001540601.1| - 6.5e-07 29.7 0.1 1.4e-06 28.6 0.1 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family KRTDAP PF15200.6 gi|159041349|ref|YP_001540601.1| - 0.073 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Keratinocyte differentiation-associated DUF3863 PF12979.7 gi|159041349|ref|YP_001540601.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3863) Raffinose_syn PF05691.12 gi|159041350|ref|YP_001540602.1| - 0.0084 13.9 0.0 1.7 6.3 0.0 2.3 2 1 0 2 2 2 2 Raffinose synthase or seed imbibition protein Sip1 SBP_bac_5 PF00496.22 gi|159041351|ref|YP_001540603.1| - 4.1e-23 82.0 10.4 7.3e-23 81.1 10.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041351|ref|YP_001540603.1| - 0.16 11.8 7.1 0.23 11.3 7.1 1.2 1 0 0 1 1 1 0 Rifin MGC-24 PF05283.11 gi|159041351|ref|YP_001540603.1| - 1.4 9.4 14.9 2.9 8.3 14.9 1.5 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin HTH_10 PF04967.12 gi|159041352|ref|YP_001540604.1| - 2e-14 53.1 0.1 3.6e-14 52.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.20 gi|159041352|ref|YP_001540604.1| - 0.0026 17.6 0.0 0.0067 16.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|159041352|ref|YP_001540604.1| - 0.02 14.6 0.2 0.05 13.4 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain SatD PF16264.5 gi|159041352|ref|YP_001540604.1| - 0.035 13.7 0.3 0.057 13.0 0.3 1.3 1 0 0 1 1 1 0 SatD family (SatD) HTH_24 PF13412.6 gi|159041352|ref|YP_001540604.1| - 0.05 13.2 1.3 0.33 10.6 0.1 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 gi|159041352|ref|YP_001540604.1| - 0.063 12.9 0.1 0.15 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|159041352|ref|YP_001540604.1| - 0.095 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain AhpC-TSA PF00578.21 gi|159041353|ref|YP_001540605.1| - 9.8e-31 106.3 0.0 1.8e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|159041353|ref|YP_001540605.1| - 1.1e-15 57.6 0.0 1.5e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|159041353|ref|YP_001540605.1| - 1.7e-08 34.2 0.0 3.2e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF1641 PF07849.11 gi|159041354|ref|YP_001540606.1| - 3.3e-16 58.9 0.6 7.4e-16 57.7 0.6 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|159041355|ref|YP_001540607.1| - 3.8e-16 59.2 0.0 5.8e-16 58.6 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159041355|ref|YP_001540607.1| - 1.4e-08 35.2 0.4 0.00031 21.2 0.0 3.0 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|159041355|ref|YP_001540607.1| - 0.065 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|159041355|ref|YP_001540607.1| - 0.13 12.5 0.1 0.3 11.3 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain PEP_mutase PF13714.6 gi|159041356|ref|YP_001540608.1| - 3.9e-56 190.2 0.1 4.6e-56 190.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|159041356|ref|YP_001540608.1| - 1.9e-13 49.8 0.2 2.7e-13 49.3 0.2 1.2 1 0 0 1 1 1 1 Isocitrate lyase family PucR PF07905.11 gi|159041356|ref|YP_001540608.1| - 0.018 15.3 0.1 0.15 12.3 0.0 2.2 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family ThiG PF05690.14 gi|159041356|ref|YP_001540608.1| - 0.026 13.9 0.0 8.5 5.6 0.0 2.8 4 0 0 4 4 4 0 Thiazole biosynthesis protein ThiG Amidohydro_1 PF01979.20 gi|159041357|ref|YP_001540609.1| - 1.8e-15 57.1 0.0 6.8e-15 55.2 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family TPP_enzyme_C PF02775.21 gi|159041358|ref|YP_001540610.1| - 3e-32 111.5 0.9 7e-32 110.3 0.0 2.0 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|159041358|ref|YP_001540610.1| - 1.1e-22 79.9 0.5 2.1e-22 79.0 0.5 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Prenyltransf PF01255.19 gi|159041359|ref|YP_001540611.1| - 4.1e-53 180.2 0.0 4.7e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase RNA_POL_M_15KD PF02150.16 gi|159041360|ref|YP_001540612.1| - 6.1e-07 29.2 1.9 6.1e-07 29.2 1.9 1.9 2 0 0 2 2 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|159041360|ref|YP_001540612.1| - 6.9e-06 25.6 2.6 3.2e-05 23.5 2.6 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|159041360|ref|YP_001540612.1| - 2.1e-05 24.1 4.8 0.021 14.5 0.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.6 gi|159041360|ref|YP_001540612.1| - 8.8e-05 21.8 1.1 0.00016 20.9 1.1 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.7 gi|159041360|ref|YP_001540612.1| - 0.00018 21.5 1.4 0.00026 21.0 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|159041360|ref|YP_001540612.1| - 0.0014 18.7 3.9 0.39 10.8 0.2 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|159041360|ref|YP_001540612.1| - 0.0014 17.9 4.5 0.15 11.5 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain IBR PF01485.21 gi|159041360|ref|YP_001540612.1| - 0.0031 17.7 2.4 0.0043 17.2 1.9 1.5 1 1 0 1 1 1 1 IBR domain, a half RING-finger domain zf-C4_Topoisom PF01396.19 gi|159041360|ref|YP_001540612.1| - 0.0047 16.7 6.1 0.18 11.6 5.6 2.2 1 1 1 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.7 gi|159041360|ref|YP_001540612.1| - 0.0051 17.2 3.0 0.83 10.1 0.1 2.7 2 1 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.6 gi|159041360|ref|YP_001540612.1| - 0.0083 16.0 4.8 0.051 13.5 3.9 2.5 2 1 1 3 3 3 1 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|159041360|ref|YP_001540612.1| - 0.0084 15.8 1.3 0.92 9.3 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|159041360|ref|YP_001540612.1| - 0.013 15.9 3.4 0.023 15.1 3.4 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar CpXC PF14353.6 gi|159041360|ref|YP_001540612.1| - 0.014 15.4 2.6 0.083 12.9 0.1 2.3 1 1 1 2 2 2 0 CpXC protein zf-tcix PF14952.6 gi|159041360|ref|YP_001540612.1| - 0.019 14.6 4.7 1.1 8.9 0.3 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF2387 PF09526.10 gi|159041360|ref|YP_001540612.1| - 0.025 14.7 2.4 0.039 14.1 2.4 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) RNHCP PF12647.7 gi|159041360|ref|YP_001540612.1| - 0.026 14.5 0.3 0.037 14.0 0.3 1.3 1 1 0 1 1 1 0 RNHCP domain Ogr_Delta PF04606.12 gi|159041360|ref|YP_001540612.1| - 0.042 13.8 0.7 4.1 7.5 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF1610 PF07754.11 gi|159041360|ref|YP_001540612.1| - 0.044 13.7 4.8 1.3 9.0 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|159041360|ref|YP_001540612.1| - 0.054 13.5 4.0 0.99 9.4 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|159041360|ref|YP_001540612.1| - 0.06 13.3 2.4 0.092 12.7 1.2 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|159041360|ref|YP_001540612.1| - 0.12 12.4 1.9 0.24 11.5 1.6 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_KTR PF14205.6 gi|159041360|ref|YP_001540612.1| - 0.12 12.2 5.1 2.7 7.8 0.4 2.4 1 1 1 2 2 2 0 Cysteine-rich KTR zf-ACC PF17848.1 gi|159041360|ref|YP_001540612.1| - 0.13 12.3 7.1 7 6.8 0.2 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|159041360|ref|YP_001540612.1| - 0.15 12.0 3.2 2.5 8.1 2.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|159041360|ref|YP_001540612.1| - 0.17 11.7 2.7 3.2 7.7 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_recom PF13408.6 gi|159041360|ref|YP_001540612.1| - 0.19 12.3 4.1 0.45 11.1 4.1 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.6 gi|159041360|ref|YP_001540612.1| - 0.19 12.4 6.8 4.7 7.9 1.1 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.16 gi|159041360|ref|YP_001540612.1| - 0.2 11.7 5.0 1.4 9.0 0.1 2.6 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|159041360|ref|YP_001540612.1| - 0.28 11.3 3.8 1.3 9.2 3.8 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf_C2H2_10 PF18414.1 gi|159041360|ref|YP_001540612.1| - 0.32 10.6 6.6 2.7 7.6 1.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger TF_Zn_Ribbon PF08271.12 gi|159041360|ref|YP_001540612.1| - 0.35 10.4 6.5 0.13 11.8 3.1 2.2 2 1 0 2 2 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|159041360|ref|YP_001540612.1| - 0.36 11.0 3.3 1.7 8.8 3.9 1.8 2 1 0 2 2 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_13 PF09855.9 gi|159041360|ref|YP_001540612.1| - 0.38 11.0 3.2 6.5 7.0 0.7 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-FPG_IleRS PF06827.14 gi|159041360|ref|YP_001540612.1| - 0.39 10.6 4.7 11 6.0 4.5 2.4 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS FYDLN_acid PF09538.10 gi|159041360|ref|YP_001540612.1| - 0.49 11.1 6.8 2.2 9.0 6.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF35_N PF12172.8 gi|159041360|ref|YP_001540612.1| - 0.53 10.2 2.6 8.4 6.4 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Mu-like_Com PF10122.9 gi|159041360|ref|YP_001540612.1| - 0.58 9.7 6.1 2.1 7.9 0.5 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com NOB1_Zn_bind PF08772.11 gi|159041360|ref|YP_001540612.1| - 0.7 10.1 5.8 32 4.8 5.8 2.5 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF3797 PF12677.7 gi|159041360|ref|YP_001540612.1| - 0.98 9.4 7.1 0.55 10.2 0.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf_UBZ PF18439.1 gi|159041360|ref|YP_001540612.1| - 1.3 8.7 5.0 4 7.1 0.1 2.5 3 0 0 3 3 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 gi|159041360|ref|YP_001540612.1| - 2.4 9.0 6.4 3.6 8.4 0.6 2.2 2 1 0 2 2 2 0 zinc-ribbon family zf-Mss51 PF13824.6 gi|159041360|ref|YP_001540612.1| - 3.4 7.8 8.0 16 5.7 3.9 2.9 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YacG PF03884.14 gi|159041360|ref|YP_001540612.1| - 4.4 7.1 6.1 9.2 6.1 0.1 2.7 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG Lactamase_B_2 PF12706.7 gi|159041361|ref|YP_001540613.1| - 1.4e-05 24.8 0.2 3.5e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|159041361|ref|YP_001540613.1| - 5e-05 23.2 0.1 7.8e-05 22.6 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|159041361|ref|YP_001540613.1| - 9.3e-05 22.5 6.1 0.002 18.2 4.1 2.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|159041361|ref|YP_001540613.1| - 0.0022 17.4 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|159041361|ref|YP_001540613.1| - 0.035 14.0 1.5 0.064 13.2 0.1 2.1 3 0 0 3 3 3 0 Zn-dependent metallo-hydrolase RNA specificity domain DUF3253 PF11625.8 gi|159041362|ref|YP_001540614.1| - 0.0032 17.6 0.1 0.0041 17.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3253) DsrD PF08679.11 gi|159041362|ref|YP_001540614.1| - 0.013 15.7 0.3 0.015 15.5 0.3 1.1 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) DUF1495 PF07381.11 gi|159041362|ref|YP_001540614.1| - 0.014 15.2 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) FaeA PF04703.12 gi|159041362|ref|YP_001540614.1| - 0.025 14.9 0.1 0.038 14.4 0.1 1.3 1 1 0 1 1 1 0 FaeA-like protein HTH_24 PF13412.6 gi|159041362|ref|YP_001540614.1| - 0.034 13.7 0.2 0.71 9.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding z-alpha PF02295.17 gi|159041362|ref|YP_001540614.1| - 0.049 13.7 0.5 0.06 13.4 0.5 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain AbiEi_4 PF13338.6 gi|159041362|ref|YP_001540614.1| - 0.078 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin PaaX PF07848.12 gi|159041362|ref|YP_001540614.1| - 0.15 12.3 0.1 0.16 12.2 0.1 1.2 1 1 0 1 1 1 0 PaaX-like protein BLACT_WH PF17778.1 gi|159041362|ref|YP_001540614.1| - 0.18 11.8 0.2 0.18 11.8 0.2 1.5 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain Ribosomal_S25 PF03297.15 gi|159041363|ref|YP_001540615.1| - 3.7e-20 72.0 3.7 4.6e-20 71.7 3.7 1.1 1 0 0 1 1 1 1 S25 ribosomal protein EAP30 PF04157.16 gi|159041363|ref|YP_001540615.1| - 0.0061 15.9 0.0 0.0081 15.5 0.0 1.3 1 1 0 1 1 1 1 EAP30/Vps36 family TrmB PF01978.19 gi|159041363|ref|YP_001540615.1| - 0.024 14.5 0.2 0.046 13.6 0.2 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RHH_5 PF07878.11 gi|159041363|ref|YP_001540615.1| - 0.073 13.0 0.1 0.59 10.1 0.0 2.4 3 0 0 3 3 3 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Ribosomal_L6e PF01159.19 gi|159041363|ref|YP_001540615.1| - 0.19 12.3 2.2 0.24 11.9 2.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L6e 2-Hacid_dh_C PF02826.19 gi|159041365|ref|YP_001540617.1| - 4.3e-56 189.1 0.2 1.6e-55 187.2 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|159041365|ref|YP_001540617.1| - 1.8e-29 102.1 0.1 2.3e-29 101.8 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|159041365|ref|YP_001540617.1| - 6.7e-07 29.5 0.1 1.7e-06 28.2 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|159041365|ref|YP_001540617.1| - 0.00046 19.8 0.1 0.00098 18.7 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|159041365|ref|YP_001540617.1| - 0.0011 19.1 0.1 0.0027 17.9 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|159041365|ref|YP_001540617.1| - 0.003 18.1 0.2 0.064 13.8 0.1 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N PF00107.26 gi|159041365|ref|YP_001540617.1| - 0.014 15.4 0.2 0.054 13.5 0.1 2.0 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Gp_dh_N PF00044.24 gi|159041365|ref|YP_001540617.1| - 0.041 14.2 1.8 0.17 12.3 1.7 2.1 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aminotran_5 PF00266.19 gi|159041366|ref|YP_001540618.1| - 8.7e-31 107.2 0.0 9.6e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|159041366|ref|YP_001540618.1| - 0.00055 18.6 0.1 0.00077 18.1 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Q_salvage PF10343.9 gi|159041367|ref|YP_001540619.1| - 0.032 13.8 0.0 0.12 12.0 0.0 2.0 1 1 0 1 1 1 0 Potential Queuosine, Q, salvage protein family AGOG PF09171.10 gi|159041367|ref|YP_001540619.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 N-glycosylase/DNA lyase HhH-GPD PF00730.25 gi|159041367|ref|YP_001540619.1| - 0.19 12.2 0.0 0.33 11.4 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HTH_11 PF08279.12 gi|159041368|ref|YP_001540620.1| - 0.00039 20.3 0.1 0.0026 17.7 0.0 2.2 2 0 0 2 2 2 1 HTH domain DUF3489 PF11994.8 gi|159041368|ref|YP_001540620.1| - 0.00077 19.5 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) Cdc6_C PF09079.11 gi|159041368|ref|YP_001540620.1| - 0.0022 17.9 0.0 0.029 14.3 0.0 2.3 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain HTH_24 PF13412.6 gi|159041368|ref|YP_001540620.1| - 0.0036 16.8 0.5 0.0066 16.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TP_methylase PF00590.20 gi|159041368|ref|YP_001540620.1| - 0.004 17.1 0.0 0.0057 16.6 0.0 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TrmB PF01978.19 gi|159041368|ref|YP_001540620.1| - 0.0059 16.5 0.0 0.014 15.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|159041368|ref|YP_001540620.1| - 0.0076 16.3 0.0 0.034 14.3 0.0 1.9 2 0 0 2 2 2 1 DprA winged helix domain HTH_36 PF13730.6 gi|159041368|ref|YP_001540620.1| - 0.0088 16.0 0.0 0.026 14.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.12 gi|159041368|ref|YP_001540620.1| - 0.029 14.6 0.0 0.068 13.4 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_DeoR PF08220.12 gi|159041368|ref|YP_001540620.1| - 0.03 14.1 0.0 0.068 12.9 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|159041368|ref|YP_001540620.1| - 0.032 14.6 0.0 0.076 13.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|159041368|ref|YP_001540620.1| - 0.035 14.1 0.0 0.56 10.2 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|159041368|ref|YP_001540620.1| - 0.042 13.7 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family RPA_C PF08784.11 gi|159041368|ref|YP_001540620.1| - 0.047 14.3 0.0 0.088 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal GntR PF00392.21 gi|159041368|ref|YP_001540620.1| - 0.052 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|159041368|ref|YP_001540620.1| - 0.16 12.0 0.0 0.73 9.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HIT PF01230.23 gi|159041369|ref|YP_001540621.1| - 0.0043 17.8 0.1 0.0072 17.0 0.1 1.4 1 1 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|159041369|ref|YP_001540621.1| - 0.062 13.2 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 TFIIB PF00382.19 gi|159041370|ref|YP_001540622.1| - 4.6e-37 125.9 1.8 3e-18 65.6 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|159041370|ref|YP_001540622.1| - 3.3e-16 58.5 0.2 5.3e-16 57.9 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|159041370|ref|YP_001540622.1| - 0.00011 21.5 1.5 0.00044 19.6 1.5 1.9 1 1 0 1 1 1 1 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|159041370|ref|YP_001540622.1| - 0.00017 21.2 0.8 0.00032 20.2 0.8 1.5 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Sigma70_r4 PF04545.16 gi|159041370|ref|YP_001540622.1| - 0.00031 20.2 0.1 0.012 15.1 0.1 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|159041370|ref|YP_001540622.1| - 0.0011 18.3 0.3 0.04 13.3 0.1 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Cyclin_N PF00134.23 gi|159041370|ref|YP_001540622.1| - 0.0013 18.4 0.3 0.0072 16.1 0.1 2.0 2 0 0 2 2 2 1 Cyclin, N-terminal domain RB_B PF01857.20 gi|159041370|ref|YP_001540622.1| - 0.0046 17.0 0.1 0.01 15.9 0.1 1.6 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain Lar_restr_allev PF14354.6 gi|159041370|ref|YP_001540622.1| - 0.0046 17.3 0.9 0.011 16.1 0.2 2.0 2 0 0 2 2 2 1 Restriction alleviation protein Lar Coronavirus_5 PF05528.11 gi|159041370|ref|YP_001540622.1| - 0.0063 16.5 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Coronavirus gene 5 protein Ribosomal_S27e PF01667.17 gi|159041370|ref|YP_001540622.1| - 0.0068 16.1 0.5 0.013 15.2 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 RNA_POL_M_15KD PF02150.16 gi|159041370|ref|YP_001540622.1| - 0.011 15.6 0.1 0.022 14.6 0.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|159041370|ref|YP_001540622.1| - 0.013 15.5 0.3 0.027 14.4 0.3 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_11 PF08279.12 gi|159041370|ref|YP_001540622.1| - 0.017 15.1 0.2 0.065 13.2 0.2 2.0 1 0 0 1 1 1 0 HTH domain zf-NADH-PPase PF09297.11 gi|159041370|ref|YP_001540622.1| - 0.018 14.7 0.9 0.53 10.0 0.0 2.6 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|159041370|ref|YP_001540622.1| - 0.021 15.0 0.8 0.04 14.1 0.8 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Glycos_trans_3N PF02885.17 gi|159041370|ref|YP_001540622.1| - 0.022 14.6 0.2 1.7 8.5 0.0 2.5 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain Rrf2 PF02082.20 gi|159041370|ref|YP_001540622.1| - 0.03 14.7 0.9 11 6.5 0.2 3.6 3 1 1 4 4 3 0 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|159041370|ref|YP_001540622.1| - 0.042 13.5 0.3 0.24 11.1 0.2 2.3 1 1 1 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|159041370|ref|YP_001540622.1| - 0.048 13.5 0.4 0.25 11.2 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain zf-C2H2_12 PF18658.1 gi|159041370|ref|YP_001540622.1| - 0.051 13.1 0.5 1.5 8.4 0.0 2.8 3 0 0 3 3 2 0 Zinc-finger C2H2-type zf-RRN7 PF11781.8 gi|159041370|ref|YP_001540622.1| - 0.056 13.1 1.1 0.11 12.2 1.1 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|159041370|ref|YP_001540622.1| - 0.059 13.4 0.3 19 5.4 0.0 2.8 2 1 1 3 3 3 0 Cyclin, C-terminal domain TFIIB_C_1 PF18542.1 gi|159041370|ref|YP_001540622.1| - 0.064 13.3 2.5 3.4 7.7 0.1 2.9 2 1 1 3 3 3 0 Transcription factor IIB C-terminal module 1 Rieske PF00355.26 gi|159041370|ref|YP_001540622.1| - 0.072 13.0 0.6 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 Rieske [2Fe-2S] domain HTH_23 PF13384.6 gi|159041370|ref|YP_001540622.1| - 0.076 12.8 0.3 2.5 8.0 0.1 3.4 3 0 0 3 3 3 0 Homeodomain-like domain zinc_ribbon_4 PF13717.6 gi|159041370|ref|YP_001540622.1| - 0.08 12.9 0.3 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|159041370|ref|YP_001540622.1| - 0.13 12.2 0.0 0.37 10.8 0.0 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|159041370|ref|YP_001540622.1| - 0.19 11.8 1.2 0.32 11.1 0.2 2.0 2 0 0 2 2 1 0 Acetyl-coA carboxylase zinc finger domain zf-RING_5 PF14634.6 gi|159041370|ref|YP_001540622.1| - 1.7 8.7 3.6 42 4.2 0.0 3.0 2 1 0 3 3 3 0 zinc-RING finger domain Prok-RING_4 PF14447.6 gi|159041370|ref|YP_001540622.1| - 7.4 6.5 7.2 17 5.3 0.2 2.9 2 1 1 3 3 3 0 Prokaryotic RING finger family 4 Thioredoxin_8 PF13905.6 gi|159041371|ref|YP_001540623.1| - 0.078 13.3 0.0 0.093 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like OAD_gamma PF04277.13 gi|159041372|ref|YP_001540624.1| - 9.8 6.9 9.2 1.7 9.3 0.6 2.3 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain SBP_bac_5 PF00496.22 gi|159041373|ref|YP_001540625.1| - 1.1e-05 24.6 26.3 0.0057 15.7 9.4 5.2 4 1 0 4 4 4 3 Bacterial extracellular solute-binding proteins, family 5 Middle SpoIIIAH PF12685.7 gi|159041373|ref|YP_001540625.1| - 4.2 7.2 14.2 0.51 10.1 9.7 1.6 2 0 0 2 2 2 0 SpoIIIAH-like protein BPD_transp_1 PF00528.22 gi|159041374|ref|YP_001540626.1| - 7e-26 91.1 18.5 7e-26 91.1 18.5 2.4 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|159041375|ref|YP_001540627.1| - 2.8e-18 66.3 18.5 2.8e-18 66.3 18.5 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|159041375|ref|YP_001540627.1| - 0.31 11.0 0.1 0.31 11.0 0.1 2.9 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|159041376|ref|YP_001540628.1| - 1.1e-27 97.2 0.0 1.6e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159041376|ref|YP_001540628.1| - 1.8e-20 73.2 0.1 4.7e-20 71.9 0.0 1.7 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|159041376|ref|YP_001540628.1| - 2.8e-08 34.0 0.4 2.3e-05 24.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041376|ref|YP_001540628.1| - 1.2e-06 28.1 0.2 0.0011 18.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|159041376|ref|YP_001540628.1| - 6.3e-06 26.5 0.3 5.9e-05 23.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|159041376|ref|YP_001540628.1| - 0.0001 22.5 0.0 0.00019 21.6 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TniB PF05621.11 gi|159041376|ref|YP_001540628.1| - 0.00049 19.6 0.2 0.065 12.6 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|159041376|ref|YP_001540628.1| - 0.00068 20.1 0.1 0.0014 19.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|159041376|ref|YP_001540628.1| - 0.00071 19.2 0.1 0.003 17.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|159041376|ref|YP_001540628.1| - 0.00073 19.5 0.2 0.0017 18.3 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|159041376|ref|YP_001540628.1| - 0.00093 18.9 0.1 0.0018 18.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|159041376|ref|YP_001540628.1| - 0.001 18.0 0.3 0.077 11.8 0.1 2.5 2 1 0 2 2 2 1 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|159041376|ref|YP_001540628.1| - 0.0012 18.6 0.2 0.024 14.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|159041376|ref|YP_001540628.1| - 0.0019 17.9 0.2 0.02 14.6 0.1 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|159041376|ref|YP_001540628.1| - 0.0033 17.3 0.1 0.0077 16.1 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase APS_kinase PF01583.20 gi|159041376|ref|YP_001540628.1| - 0.0046 16.9 0.0 0.086 12.7 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_23 PF13476.6 gi|159041376|ref|YP_001540628.1| - 0.0048 17.4 0.2 0.0075 16.8 0.2 1.2 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|159041376|ref|YP_001540628.1| - 0.0078 15.4 0.2 0.018 14.2 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain MMR_HSR1 PF01926.23 gi|159041376|ref|YP_001540628.1| - 0.0088 16.1 0.1 0.017 15.2 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Sigma54_activat PF00158.26 gi|159041376|ref|YP_001540628.1| - 0.014 15.1 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_13 PF13166.6 gi|159041376|ref|YP_001540628.1| - 0.02 13.6 0.0 0.77 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|159041376|ref|YP_001540628.1| - 0.025 14.3 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 gi|159041376|ref|YP_001540628.1| - 0.033 14.7 0.0 0.12 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|159041376|ref|YP_001540628.1| - 0.044 13.0 0.0 0.093 11.9 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain SbcCD_C PF13558.6 gi|159041376|ref|YP_001540628.1| - 0.048 13.9 0.0 0.16 12.2 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 gi|159041376|ref|YP_001540628.1| - 0.052 12.9 0.6 0.17 11.2 0.1 2.0 2 1 1 3 3 3 0 KaiC Zeta_toxin PF06414.12 gi|159041376|ref|YP_001540628.1| - 0.061 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|159041376|ref|YP_001540628.1| - 0.072 13.5 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|159041376|ref|YP_001540628.1| - 0.085 12.6 0.3 0.73 9.6 0.3 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_10 PF12846.7 gi|159041376|ref|YP_001540628.1| - 0.087 11.7 0.0 0.42 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_7 PF12775.7 gi|159041376|ref|YP_001540628.1| - 0.088 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|159041376|ref|YP_001540628.1| - 0.095 13.1 0.1 0.35 11.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|159041376|ref|YP_001540628.1| - 0.1 12.5 0.1 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 gi|159041376|ref|YP_001540628.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RuvB_N PF05496.12 gi|159041376|ref|YP_001540628.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_15 PF13175.6 gi|159041376|ref|YP_001540628.1| - 0.13 11.9 0.0 0.33 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|159041376|ref|YP_001540628.1| - 0.19 11.9 0.2 1.1 9.4 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|159041376|ref|YP_001540628.1| - 0.22 11.2 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain GATase_3 PF07685.14 gi|159041377|ref|YP_001540629.1| - 2.8e-31 108.7 0.0 3.9e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|159041377|ref|YP_001540629.1| - 5.4e-13 49.1 0.0 9.3e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|159041377|ref|YP_001540629.1| - 3.8e-12 46.4 0.2 9.2e-08 32.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain Shikimate_dh_N PF08501.11 gi|159041378|ref|YP_001540630.1| - 4e-24 84.7 0.0 8.8e-24 83.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|159041378|ref|YP_001540630.1| - 1.1e-08 35.2 0.0 2.1e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|159041378|ref|YP_001540630.1| - 0.0094 16.2 0.1 0.12 12.7 0.1 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain SDH_C PF18317.1 gi|159041378|ref|YP_001540630.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate 5'-dehydrogenase C-terminal domain DHQ_synthase PF01761.20 gi|159041379|ref|YP_001540631.1| - 2.2e-79 266.4 0.6 2.6e-79 266.1 0.6 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|159041379|ref|YP_001540631.1| - 6.3e-07 29.3 5.0 6.3e-06 26.1 5.0 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|159041379|ref|YP_001540631.1| - 0.012 14.5 4.0 0.015 14.1 1.6 2.2 2 1 0 2 2 2 0 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 gi|159041380|ref|YP_001540632.1| - 5e-78 261.7 0.0 6.8e-78 261.3 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|159041380|ref|YP_001540632.1| - 1.7e-10 40.8 0.0 1e-07 31.7 0.0 2.2 2 0 0 2 2 2 2 NeuB family GFO_IDH_MocA PF01408.22 gi|159041380|ref|YP_001540632.1| - 0.063 14.1 0.0 0.33 11.8 0.0 2.2 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold DUF561 PF04481.12 gi|159041380|ref|YP_001540632.1| - 0.18 11.0 0.0 5.3 6.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF561) CM_2 PF01817.21 gi|159041381|ref|YP_001540633.1| - 3.5e-17 62.5 0.9 8.8e-17 61.2 0.9 1.7 1 0 0 1 1 1 1 Chorismate mutase type II PDH PF02153.17 gi|159041381|ref|YP_001540633.1| - 9.4e-15 54.3 0.1 1.3e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Transket_pyr PF02779.24 gi|159041382|ref|YP_001540634.1| - 2.5e-37 128.3 0.0 4.5e-37 127.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|159041382|ref|YP_001540634.1| - 6.7e-28 97.1 0.1 1.2e-27 96.2 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transketolase_N PF00456.21 gi|159041382|ref|YP_001540634.1| - 1.4e-26 93.2 0.0 2.6e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|159041382|ref|YP_001540634.1| - 2.6e-12 46.5 0.2 6.5e-10 38.7 0.1 2.5 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|159041382|ref|YP_001540634.1| - 0.00085 19.1 2.2 0.046 13.5 0.2 3.6 3 2 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFOR_II PF17147.4 gi|159041382|ref|YP_001540634.1| - 0.0075 16.6 0.1 0.018 15.4 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II NTP_transf_3 PF12804.7 gi|159041382|ref|YP_001540634.1| - 0.052 13.9 0.1 2 8.8 0.0 3.0 2 1 1 3 3 3 0 MobA-like NTP transferase domain FAD_binding_3 PF01494.19 gi|159041382|ref|YP_001540634.1| - 0.14 11.4 0.1 0.23 10.7 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Gp_dh_N PF00044.24 gi|159041382|ref|YP_001540634.1| - 0.22 11.9 1.8 1.3 9.4 0.4 2.4 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.20 gi|159041383|ref|YP_001540635.1| - 1.9e-17 63.3 0.0 6.2e-17 61.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159041383|ref|YP_001540635.1| - 1.8e-13 51.1 0.0 7.6e-13 49.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159041383|ref|YP_001540635.1| - 0.0013 19.1 0.0 0.0083 16.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Nudix_N PF12535.8 gi|159041383|ref|YP_001540635.1| - 0.035 13.7 0.1 0.076 12.6 0.1 1.5 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal Glyco_transf_4 PF13439.6 gi|159041383|ref|YP_001540635.1| - 0.066 13.2 0.0 0.28 11.1 0.0 2.0 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Topoisom_bac PF01131.20 gi|159041384|ref|YP_001540636.1| - 1e-72 245.4 0.2 5.8e-70 236.4 0.0 2.2 1 1 1 2 2 2 2 DNA topoisomerase Toprim PF01751.22 gi|159041384|ref|YP_001540636.1| - 4.8e-22 78.1 0.0 1.7e-21 76.3 0.0 2.1 2 0 0 2 2 2 1 Toprim domain zf_Rg PF17915.1 gi|159041384|ref|YP_001540636.1| - 2.3e-11 42.9 3.1 2.3e-11 42.9 3.1 2.2 2 0 0 2 2 2 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|159041384|ref|YP_001540636.1| - 2.5e-11 43.6 0.0 6.8e-11 42.2 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|159041384|ref|YP_001540636.1| - 8.9e-08 32.5 0.8 0.00074 19.8 0.0 4.6 3 1 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|159041384|ref|YP_001540636.1| - 1.5e-05 25.1 0.1 4.7e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf-ribbon_3 PF13248.6 gi|159041384|ref|YP_001540636.1| - 0.0019 17.5 5.1 0.038 13.4 0.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain AAA_30 PF13604.6 gi|159041384|ref|YP_001540636.1| - 0.0098 15.6 0.0 0.032 14.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain Rad50_zn_hook PF04423.14 gi|159041384|ref|YP_001540636.1| - 0.022 14.6 1.5 0.14 12.0 0.2 2.9 2 0 0 2 2 2 0 Rad50 zinc hook motif AAA_25 PF13481.6 gi|159041384|ref|YP_001540636.1| - 0.049 13.2 0.4 0.21 11.2 0.4 2.1 1 1 0 1 1 1 0 AAA domain DZR PF12773.7 gi|159041384|ref|YP_001540636.1| - 0.12 12.4 0.8 9 6.4 0.0 2.3 2 0 0 2 2 2 0 Double zinc ribbon Birna_VP5 PF03042.14 gi|159041384|ref|YP_001540636.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Birnavirus VP5 protein DUF87 PF01935.17 gi|159041384|ref|YP_001540636.1| - 0.2 11.7 1.3 0.92 9.6 0.6 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain Sulf_transp PF04143.14 gi|159041385|ref|YP_001540637.1| - 1.1e-20 74.5 22.3 1.1e-20 74.5 22.3 1.7 2 1 0 2 2 2 1 Sulphur transport CPP1-like PF11833.8 gi|159041385|ref|YP_001540637.1| - 1.7 8.2 3.7 0.84 9.3 0.2 2.3 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Rieske PF00355.26 gi|159041386|ref|YP_001540638.1| - 2.2e-11 43.5 0.0 2.6e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|159041386|ref|YP_001540638.1| - 1.3e-05 25.1 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain UDG PF03167.19 gi|159041387|ref|YP_001540639.1| - 4.3e-35 121.0 0.0 5.4e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Metallophos PF00149.28 gi|159041388|ref|YP_001540640.1| - 1.6e-11 45.1 0.0 2.8e-11 44.3 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|159041388|ref|YP_001540640.1| - 1.7e-08 34.8 0.0 3.8e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain LuxQ-periplasm PF09308.10 gi|159041388|ref|YP_001540640.1| - 0.079 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 LuxQ, periplasmic DUF4147 PF13660.6 gi|159041389|ref|YP_001540641.1| - 1.7e-66 224.0 0.2 3.2e-66 223.2 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|159041389|ref|YP_001540641.1| - 7.4e-32 109.8 3.8 1.3e-31 109.0 3.8 1.4 1 0 0 1 1 1 1 MOFRL family AA_permease_2 PF13520.6 gi|159041390|ref|YP_001540642.1| - 1e-16 60.8 48.8 1.3e-16 60.5 48.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|159041390|ref|YP_001540642.1| - 3.1e-07 29.4 42.9 4.3e-07 28.9 42.9 1.2 1 0 0 1 1 1 1 Amino acid permease DUF89 PF01937.19 gi|159041391|ref|YP_001540643.1| - 1.4e-32 113.1 0.0 1.4e-32 113.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 Cupin_2 PF07883.11 gi|159041392|ref|YP_001540644.1| - 5.7e-16 58.0 0.0 7.4e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|159041392|ref|YP_001540644.1| - 9.4e-08 32.0 0.1 4.1e-07 30.0 0.0 1.8 1 1 1 2 2 2 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|159041392|ref|YP_001540644.1| - 4.9e-06 26.2 0.0 8.8e-06 25.4 0.0 1.3 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|159041392|ref|YP_001540644.1| - 7.7e-06 25.9 0.0 8.9e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.7 gi|159041392|ref|YP_001540644.1| - 0.00068 19.5 0.0 0.00089 19.1 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain Ectoine_synth PF06339.12 gi|159041392|ref|YP_001540644.1| - 0.00084 19.5 0.0 0.00084 19.5 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase PCO_ADO PF07847.12 gi|159041392|ref|YP_001540644.1| - 0.0043 16.5 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 PCO_ADO DMSP_lyase PF16867.5 gi|159041392|ref|YP_001540644.1| - 0.026 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Auxin_BP PF02041.16 gi|159041392|ref|YP_001540644.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.4 1 1 0 1 1 1 0 Auxin binding protein CENP-C_C PF11699.8 gi|159041392|ref|YP_001540644.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.4 1 1 0 1 1 1 0 Mif2/CENP-C like MmgE_PrpD PF03972.14 gi|159041393|ref|YP_001540645.1| - 1.8e-134 448.6 0.0 2.1e-134 448.4 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Sugar_tr PF00083.24 gi|159041394|ref|YP_001540646.1| - 1.2e-35 123.3 27.6 2.2e-27 96.0 11.4 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|159041394|ref|YP_001540646.1| - 3.1e-31 108.6 53.9 7.5e-27 94.2 34.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|159041394|ref|YP_001540646.1| - 0.03 13.6 25.4 0.054 12.8 10.1 2.1 1 1 1 2 2 2 0 Uncharacterised MFS-type transporter YbfB Helicase_C PF00271.31 gi|159041395|ref|YP_001540647.1| - 1.5e-19 70.4 0.1 3.2e-19 69.3 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|159041395|ref|YP_001540647.1| - 9.7e-13 47.9 0.1 1.4e-12 47.3 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|159041395|ref|YP_001540647.1| - 5.6e-11 42.7 2.9 8.2e-07 29.2 0.0 3.2 3 1 0 3 3 3 2 Type III restriction enzyme, res subunit Intein_splicing PF14890.6 gi|159041395|ref|YP_001540647.1| - 4.5e-09 36.3 0.4 4.5e-09 36.3 0.4 2.7 2 2 0 2 2 2 1 Intein splicing domain DEAD PF00270.29 gi|159041395|ref|YP_001540647.1| - 1.1e-06 28.6 0.5 0.002 18.0 0.0 2.5 2 1 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|159041395|ref|YP_001540647.1| - 0.00014 22.1 1.9 0.00034 20.8 0.0 2.1 1 1 1 2 2 2 1 Helicase C-terminal domain SNF2_N PF00176.23 gi|159041395|ref|YP_001540647.1| - 0.0086 14.8 0.0 1 8.0 0.0 2.5 2 0 0 2 2 2 2 SNF2 family N-terminal domain DUF2208 PF09973.9 gi|159041396|ref|YP_001540648.1| - 1.3e-28 100.3 7.7 1.7e-28 99.8 7.7 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) zf-ribbon_3 PF13248.6 gi|159041396|ref|YP_001540648.1| - 1e-08 34.3 0.7 1.5e-08 33.7 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|159041396|ref|YP_001540648.1| - 2.7e-06 26.9 0.8 4.1e-06 26.3 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|159041396|ref|YP_001540648.1| - 1.7e-05 24.7 0.5 2.7e-05 24.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|159041396|ref|YP_001540648.1| - 0.00025 21.7 0.6 0.00053 20.7 0.6 1.5 1 0 0 1 1 1 1 zinc-ribbon family Virul_fac_BrkB PF03631.15 gi|159041396|ref|YP_001540648.1| - 0.0012 18.5 2.4 0.0012 18.5 2.4 1.9 2 0 0 2 2 1 1 Virulence factor BrkB TF_Zn_Ribbon PF08271.12 gi|159041396|ref|YP_001540648.1| - 0.041 13.4 0.8 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|159041396|ref|YP_001540648.1| - 0.056 13.5 1.6 0.11 12.6 1.4 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Acetone_carb_G PF08882.11 gi|159041396|ref|YP_001540648.1| - 0.079 13.1 1.8 0.74 10.0 2.2 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-RING_7 PF02591.15 gi|159041396|ref|YP_001540648.1| - 0.1 12.8 2.8 1.3 9.2 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|159041396|ref|YP_001540648.1| - 0.12 12.1 0.7 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|159041396|ref|YP_001540648.1| - 0.19 11.7 0.3 0.31 11.0 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|159041396|ref|YP_001540648.1| - 0.26 10.9 2.2 1.9 8.2 0.3 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|159041396|ref|YP_001540648.1| - 0.57 10.1 3.6 4 7.4 0.2 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Phage_holin_3_6 PF07332.11 gi|159041396|ref|YP_001540648.1| - 2.2 8.3 14.8 0.94 9.5 0.8 2.2 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Rad50_zn_hook PF04423.14 gi|159041396|ref|YP_001540648.1| - 3 7.8 4.7 11 6.0 0.2 2.7 2 1 1 3 3 2 0 Rad50 zinc hook motif PDR_CDR PF06422.12 gi|159041396|ref|YP_001540648.1| - 4.4 7.3 6.7 12 5.8 0.1 3.2 3 0 0 3 3 3 0 CDR ABC transporter Sigma_reg_N PF13800.6 gi|159041396|ref|YP_001540648.1| - 9.1 6.7 0.0 9.1 6.7 0.0 3.1 2 1 1 3 3 2 0 Sigma factor regulator N-terminal CxxCxxCC PF03692.15 gi|159041397|ref|YP_001540649.1| - 1.4e-10 41.7 1.1 2e-10 41.2 1.1 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain tRNA-synt_1e PF01406.19 gi|159041398|ref|YP_001540650.1| - 6.1e-110 367.3 0.0 8.2e-110 366.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|159041398|ref|YP_001540650.1| - 4.9e-13 49.3 0.7 5.3e-12 46.0 0.0 2.9 3 1 0 3 3 3 1 DALR domain tRNA-synt_1g PF09334.11 gi|159041398|ref|YP_001540650.1| - 9.8e-09 34.4 0.1 1.6e-05 23.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|159041398|ref|YP_001540650.1| - 5e-08 31.6 0.0 9e-08 30.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|159041398|ref|YP_001540650.1| - 8.9e-07 28.1 0.0 0.00023 20.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|159041398|ref|YP_001540650.1| - 0.013 14.5 0.6 0.15 10.9 0.2 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain DUF1899 PF08953.11 gi|159041398|ref|YP_001540650.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1899) GIT_SHD PF08518.11 gi|159041399|ref|YP_001540651.1| - 0.11 12.1 0.5 1.3 8.8 0.1 2.3 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT AsnC_trans_reg PF01037.21 gi|159041401|ref|YP_001540653.1| - 7e-17 61.2 0.0 1.1e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|159041401|ref|YP_001540653.1| - 5e-13 48.6 1.6 9.2e-13 47.8 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|159041401|ref|YP_001540653.1| - 5.2e-12 45.1 2.1 5.2e-12 45.1 2.1 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|159041401|ref|YP_001540653.1| - 3e-05 23.8 0.2 0.0028 17.5 0.1 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|159041401|ref|YP_001540653.1| - 0.0027 17.6 0.1 0.0049 16.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|159041401|ref|YP_001540653.1| - 0.0049 16.9 0.1 0.008 16.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|159041401|ref|YP_001540653.1| - 0.0076 16.2 0.4 0.016 15.1 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|159041401|ref|YP_001540653.1| - 0.013 15.4 0.8 0.013 15.4 0.8 1.7 2 0 0 2 2 2 0 HTH domain RuvB_C PF05491.13 gi|159041401|ref|YP_001540653.1| - 0.014 15.2 0.1 0.025 14.4 0.1 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_IclR PF09339.10 gi|159041401|ref|YP_001540653.1| - 0.047 13.5 0.2 0.078 12.8 0.2 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|159041401|ref|YP_001540653.1| - 0.052 13.4 0.2 0.076 12.9 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|159041401|ref|YP_001540653.1| - 0.057 13.2 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|159041401|ref|YP_001540653.1| - 0.078 13.0 0.5 0.14 12.2 0.5 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain GntR PF00392.21 gi|159041401|ref|YP_001540653.1| - 0.097 12.3 0.5 0.2 11.4 0.5 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|159041401|ref|YP_001540653.1| - 0.11 12.8 0.1 0.26 11.7 0.0 1.5 2 0 0 2 2 2 0 Penicillinase repressor DNA_primase_lrg PF04104.14 gi|159041402|ref|YP_001540654.1| - 1.2e-22 80.6 0.0 2.1e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Glyco_hydro_4 PF02056.16 gi|159041403|ref|YP_001540655.1| - 7.1e-46 156.1 0.0 9.7e-46 155.6 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|159041403|ref|YP_001540655.1| - 2.1e-40 139.0 0.0 4.1e-40 138.1 0.0 1.5 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|159041403|ref|YP_001540655.1| - 0.0041 17.2 0.1 2.6 8.1 0.0 2.3 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|159041403|ref|YP_001540655.1| - 0.0099 14.8 0.0 0.026 13.5 0.0 1.6 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family NAD_Gly3P_dh_N PF01210.23 gi|159041403|ref|YP_001540655.1| - 0.099 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BcrAD_BadFG PF01869.20 gi|159041404|ref|YP_001540656.1| - 6.4e-31 107.8 0.2 9.5e-31 107.3 0.2 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family GARS_A PF01071.19 gi|159041404|ref|YP_001540656.1| - 0.02 14.6 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SIS PF01380.22 gi|159041405|ref|YP_001540657.1| - 8.7e-28 96.8 2.4 1.9e-13 50.4 1.0 2.3 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|159041405|ref|YP_001540657.1| - 0.043 13.8 1.7 0.44 10.6 0.1 2.7 1 1 0 2 2 2 0 SIS domain PIG-L PF02585.17 gi|159041406|ref|YP_001540658.1| - 2.5e-26 92.9 0.0 3.3e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase DDE_Tnp_2 PF04693.12 gi|159041406|ref|YP_001540658.1| - 0.036 13.3 0.0 0.049 12.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Vps4_C PF09336.10 gi|159041406|ref|YP_001540658.1| - 0.06 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain AA_permease_2 PF13520.6 gi|159041407|ref|YP_001540659.1| - 1e-25 90.5 69.8 1.6e-25 89.8 69.8 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|159041407|ref|YP_001540659.1| - 3.6e-11 42.3 69.9 6e-11 41.6 69.9 1.3 1 1 0 1 1 1 1 Amino acid permease Metallophos PF00149.28 gi|159041408|ref|YP_001540660.1| - 5.9e-08 33.5 2.4 2.4e-07 31.5 2.4 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|159041408|ref|YP_001540660.1| - 0.0086 16.3 0.1 0.23 11.6 0.1 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain GrpB PF04229.14 gi|159041408|ref|YP_001540660.1| - 0.038 14.2 0.1 0.46 10.7 0.0 2.2 2 0 0 2 2 2 0 GrpB protein UxaC PF02614.14 gi|159041409|ref|YP_001540661.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.5 1 1 0 1 1 1 0 Glucuronate isomerase DegT_DnrJ_EryC1 PF01041.17 gi|159041410|ref|YP_001540662.1| - 1.7e-110 369.8 0.0 2.3e-110 369.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|159041410|ref|YP_001540662.1| - 2.2e-11 43.5 0.0 4.7e-11 42.5 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|159041410|ref|YP_001540662.1| - 9.8e-10 38.2 0.0 1.9e-09 37.2 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|159041410|ref|YP_001540662.1| - 1.1e-06 27.8 0.0 1.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|159041410|ref|YP_001540662.1| - 0.00012 20.8 0.0 0.00021 20.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.19 gi|159041410|ref|YP_001540662.1| - 0.071 11.7 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF2766 PF10964.8 gi|159041410|ref|YP_001540662.1| - 0.19 11.7 0.0 1.5 8.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2766) PIG-L PF02585.17 gi|159041411|ref|YP_001540663.1| - 6.9e-22 78.5 0.0 1.2e-21 77.8 0.0 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase DDE_Tnp_2 PF04693.12 gi|159041411|ref|YP_001540663.1| - 0.011 15.0 0.2 0.022 14.0 0.1 1.5 2 0 0 2 2 2 0 Archaeal putative transposase ISC1217 adh_short_C2 PF13561.6 gi|159041412|ref|YP_001540664.1| - 7.5e-48 163.1 0.0 1e-47 162.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159041412|ref|YP_001540664.1| - 1.2e-40 139.0 0.0 1.5e-40 138.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159041412|ref|YP_001540664.1| - 1.3e-09 38.3 0.0 2e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|159041412|ref|YP_001540664.1| - 1.8e-05 24.7 0.0 2.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|159041412|ref|YP_001540664.1| - 0.023 14.1 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase SinI PF08671.10 gi|159041412|ref|YP_001540664.1| - 0.15 11.9 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Anti-repressor SinI Epimerase PF01370.21 gi|159041412|ref|YP_001540664.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|159041413|ref|YP_001540665.1| - 7e-14 51.8 0.2 0.00018 20.9 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_2 PF07992.14 gi|159041413|ref|YP_001540665.1| - 0.0035 16.6 0.6 2.2 7.4 0.1 2.6 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|159041413|ref|YP_001540665.1| - 0.0078 15.0 0.0 0.26 9.9 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|159041413|ref|YP_001540665.1| - 0.028 14.0 0.6 0.47 10.0 0.0 2.4 3 0 0 3 3 3 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|159041413|ref|YP_001540665.1| - 0.041 12.7 0.0 5 5.8 0.0 2.4 2 1 0 2 2 2 0 Tryptophan halogenase OrfB_Zn_ribbon PF07282.11 gi|159041414|ref|YP_001540666.1| - 4.6e-17 61.7 0.0 8.2e-17 60.9 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Resolvase PF00239.21 gi|159041415|ref|YP_001540667.1| - 2.6e-20 73.0 0.1 3.9e-20 72.4 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|159041415|ref|YP_001540667.1| - 3.4e-10 39.9 0.1 9.5e-10 38.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|159041415|ref|YP_001540667.1| - 0.0093 15.7 0.1 0.02 14.7 0.1 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_Tnp_1 PF01527.20 gi|159041415|ref|YP_001540667.1| - 0.032 14.5 0.0 0.065 13.6 0.0 1.6 1 0 0 1 1 1 0 Transposase HTH_23 PF13384.6 gi|159041415|ref|YP_001540667.1| - 0.054 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Cep57_MT_bd PF06657.13 gi|159041415|ref|YP_001540667.1| - 0.15 12.6 0.7 6 7.4 0.1 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 AGOG PF09171.10 gi|159041416|ref|YP_001540668.1| - 8.6e-80 267.6 0.0 1e-79 267.4 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Peptidase_M50 PF02163.22 gi|159041418|ref|YP_001540670.1| - 2.9e-12 46.4 9.8 2.9e-12 46.4 9.8 2.0 1 1 1 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.6 gi|159041418|ref|YP_001540670.1| - 9e-11 42.0 0.0 2.2e-10 40.7 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|159041418|ref|YP_001540670.1| - 4.9e-05 23.1 0.1 0.00012 21.8 0.0 1.8 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|159041418|ref|YP_001540670.1| - 0.00016 22.0 0.0 0.00085 19.6 0.0 2.1 2 0 0 2 2 2 1 PDZ domain 2-Hacid_dh_C PF02826.19 gi|159041419|ref|YP_001540671.1| - 3.1e-65 218.9 0.0 5e-65 218.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|159041419|ref|YP_001540671.1| - 5.7e-27 94.0 0.1 7.5e-27 93.6 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|159041419|ref|YP_001540671.1| - 2.6e-05 24.4 0.2 0.00021 21.5 0.0 2.3 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|159041419|ref|YP_001540671.1| - 0.0012 18.5 0.0 0.078 12.5 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|159041419|ref|YP_001540671.1| - 0.0049 17.4 0.0 0.016 15.8 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|159041419|ref|YP_001540671.1| - 0.0056 17.2 0.1 1.1 9.8 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.23 gi|159041419|ref|YP_001540671.1| - 0.032 14.2 0.4 2.4 8.1 0.2 2.6 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.21 gi|159041419|ref|YP_001540671.1| - 0.037 14.1 0.0 0.096 12.7 0.0 1.8 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Glyco_hydro_12 PF01670.16 gi|159041420|ref|YP_001540672.1| - 3.5e-21 76.2 4.7 6e-21 75.4 4.7 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 TMEM154 PF15102.6 gi|159041420|ref|YP_001540672.1| - 2.1 8.3 14.1 3.5 7.5 14.1 1.3 1 0 0 1 1 1 0 TMEM154 protein family RIFIN PF02009.16 gi|159041420|ref|YP_001540672.1| - 2.5 7.9 5.0 3.3 7.5 5.0 1.1 1 0 0 1 1 1 0 Rifin Stevor PF17410.2 gi|159041420|ref|YP_001540672.1| - 3.3 7.2 10.2 4.9 6.6 10.2 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame RIFIN PF02009.16 gi|159041421|ref|YP_001540673.1| - 6.5 6.6 10.0 9.5 6.0 10.0 1.1 1 0 0 1 1 1 0 Rifin MFS_1 PF07690.16 gi|159041422|ref|YP_001540674.1| - 4.2e-26 91.7 54.0 4.2e-26 91.7 54.0 2.7 1 1 2 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159041422|ref|YP_001540674.1| - 8.6e-19 67.7 34.6 1.5e-14 53.7 12.9 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter DUF1774 PF08611.10 gi|159041422|ref|YP_001540674.1| - 0.0079 16.5 0.0 0.054 13.8 0.0 2.5 1 0 0 1 1 1 1 Fungal protein of unknown function (DUF1774) Abhydrolase_1 PF00561.20 gi|159041423|ref|YP_001540675.1| - 3.4e-10 40.0 0.0 8.1e-08 32.2 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|159041423|ref|YP_001540675.1| - 1.1e-08 34.6 0.0 6.6e-08 32.1 0.0 2.1 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|159041423|ref|YP_001540675.1| - 1.5e-08 34.4 0.0 2.1e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 gi|159041423|ref|YP_001540675.1| - 4.2e-08 33.3 0.0 0.0032 17.3 0.0 2.5 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase Esterase PF00756.20 gi|159041423|ref|YP_001540675.1| - 9.7e-08 32.0 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Abhydrolase_6 PF12697.7 gi|159041423|ref|YP_001540675.1| - 3.3e-06 27.8 0.0 2.5e-05 25.0 0.0 1.9 1 1 1 2 2 2 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|159041423|ref|YP_001540675.1| - 0.00013 21.8 0.1 0.00022 21.0 0.1 1.6 1 1 0 1 1 1 1 PGAP1-like protein Lipase_3 PF01764.25 gi|159041423|ref|YP_001540675.1| - 0.00023 21.0 0.0 0.00059 19.7 0.0 1.7 2 0 0 2 2 2 1 Lipase (class 3) Peptidase_S28 PF05577.12 gi|159041423|ref|YP_001540675.1| - 0.00081 18.3 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Thioesterase PF00975.20 gi|159041423|ref|YP_001540675.1| - 0.0017 18.5 0.0 0.0028 17.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain DLH PF01738.18 gi|159041423|ref|YP_001540675.1| - 0.0018 17.9 0.0 0.0091 15.6 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|159041423|ref|YP_001540675.1| - 0.002 17.8 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|159041423|ref|YP_001540675.1| - 0.0023 17.9 0.0 0.0035 17.3 0.0 1.5 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_5 PF12695.7 gi|159041423|ref|YP_001540675.1| - 0.0031 17.3 0.0 0.045 13.5 0.0 2.0 2 0 0 2 2 2 1 Alpha/beta hydrolase family DUF2974 PF11187.8 gi|159041423|ref|YP_001540675.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Pribosyltran PF00156.27 gi|159041423|ref|YP_001540675.1| - 0.01 15.3 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase domain DUF2920 PF11144.8 gi|159041423|ref|YP_001540675.1| - 0.049 12.8 0.0 0.08 12.1 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Fer4_8 PF13183.6 gi|159041424|ref|YP_001540676.1| - 4e-10 40.0 2.0 8.9e-10 38.9 2.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159041424|ref|YP_001540676.1| - 1.8e-09 38.0 2.7 5.7e-09 36.4 2.7 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|159041424|ref|YP_001540676.1| - 2.8e-07 30.6 0.0 1.3e-06 28.5 0.0 2.2 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|159041424|ref|YP_001540676.1| - 8.3e-07 29.1 4.3 0.015 15.5 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041424|ref|YP_001540676.1| - 7.3e-06 26.5 5.1 3.6e-05 24.2 5.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159041424|ref|YP_001540676.1| - 3.4e-05 23.9 5.5 0.041 14.0 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159041424|ref|YP_001540676.1| - 5.3e-05 23.4 11.6 0.014 15.9 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|159041424|ref|YP_001540676.1| - 9e-05 22.1 10.4 0.038 13.8 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|159041424|ref|YP_001540676.1| - 0.00019 22.3 0.8 0.16 12.9 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|159041424|ref|YP_001540676.1| - 0.00095 19.1 9.6 0.067 13.3 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|159041424|ref|YP_001540676.1| - 0.0016 18.6 1.2 0.56 10.4 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|159041424|ref|YP_001540676.1| - 0.026 14.7 4.1 2.1 8.5 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|159041424|ref|YP_001540676.1| - 0.11 13.3 4.1 9.4 7.2 0.1 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159041424|ref|YP_001540676.1| - 0.43 10.7 12.9 1.6 8.9 2.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|159041424|ref|YP_001540676.1| - 4.4 8.5 14.9 0.92 10.6 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Nitrate_red_gam PF02665.14 gi|159041425|ref|YP_001540677.1| - 4.6e-13 49.2 21.7 1.5e-12 47.6 12.6 2.4 2 1 0 2 2 2 2 Nitrate reductase gamma subunit MHYT PF03707.16 gi|159041425|ref|YP_001540677.1| - 9.2 6.5 9.5 0.32 11.2 0.3 2.8 3 0 0 3 3 3 0 Bacterial signalling protein N terminal repeat NIR_SIR PF01077.22 gi|159041426|ref|YP_001540678.1| - 4.6e-19 68.5 0.0 6.9e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Fer4_6 PF12837.7 gi|159041426|ref|YP_001540678.1| - 0.048 13.8 3.7 0.66 10.1 1.5 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|159041426|ref|YP_001540678.1| - 0.1 13.2 0.7 0.33 11.6 0.3 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159041426|ref|YP_001540678.1| - 0.14 12.0 8.3 0.82 9.6 1.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159041426|ref|YP_001540678.1| - 0.3 11.3 2.9 0.19 11.9 0.7 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159041426|ref|YP_001540678.1| - 2.1 8.9 5.9 26 5.4 0.0 3.2 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I NIR_SIR PF01077.22 gi|159041427|ref|YP_001540679.1| - 1.3e-29 102.7 0.0 2.7e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|159041427|ref|YP_001540679.1| - 8e-12 44.8 0.0 1.6e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|159041427|ref|YP_001540679.1| - 0.00025 20.7 5.6 0.0086 15.9 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|159041427|ref|YP_001540679.1| - 0.0052 17.4 1.1 0.01 16.4 0.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain LytR_C PF13399.6 gi|159041427|ref|YP_001540679.1| - 0.092 13.7 0.0 0.22 12.5 0.0 1.6 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator Fer4_6 PF12837.7 gi|159041427|ref|YP_001540679.1| - 0.16 12.1 5.9 0.24 11.5 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159041427|ref|YP_001540679.1| - 0.16 12.2 1.6 0.2 11.9 0.3 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159041427|ref|YP_001540679.1| - 4.8 7.8 6.4 5.2 7.7 0.1 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I NUDIX PF00293.28 gi|159041428|ref|YP_001540680.1| - 4.1e-14 52.8 0.0 5.6e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.6 gi|159041428|ref|YP_001540680.1| - 0.00061 19.8 0.0 0.0008 19.4 0.0 1.3 1 1 0 1 1 1 1 DBC1 RraA-like PF03737.15 gi|159041428|ref|YP_001540680.1| - 0.025 14.7 0.0 0.82 9.8 0.0 2.0 1 1 1 2 2 2 0 Aldolase/RraA DsrC PF04358.13 gi|159041429|ref|YP_001540681.1| - 1.1e-36 125.6 0.0 1.3e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 DsrC like protein HTH_24 PF13412.6 gi|159041430|ref|YP_001540682.1| - 3.8e-05 23.2 1.4 0.00018 21.0 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|159041430|ref|YP_001540682.1| - 5.1e-05 23.1 0.2 0.00018 21.3 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|159041430|ref|YP_001540682.1| - 0.0059 16.5 0.1 0.36 10.8 0.0 2.3 2 0 0 2 2 2 1 MarR family Penicillinase_R PF03965.16 gi|159041430|ref|YP_001540682.1| - 0.051 13.9 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor HTH_26 PF13443.6 gi|159041430|ref|YP_001540682.1| - 0.093 13.2 0.1 6 7.4 0.0 2.5 2 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 gi|159041430|ref|YP_001540682.1| - 0.097 12.5 0.0 0.74 9.7 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF3440 PF11922.8 gi|159041430|ref|YP_001540682.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3440) MarR_2 PF12802.7 gi|159041430|ref|YP_001540682.1| - 0.13 12.2 0.0 0.61 10.0 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_35 PF13693.6 gi|159041430|ref|YP_001540682.1| - 0.17 11.9 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TusA PF01206.17 gi|159041431|ref|YP_001540683.1| - 3.9e-18 65.0 0.1 4.6e-18 64.8 0.1 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA MFS_1 PF07690.16 gi|159041432|ref|YP_001540684.1| - 2e-25 89.5 49.4 1.2e-16 60.7 29.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Phage_holin_3_2 PF04550.12 gi|159041433|ref|YP_001540685.1| - 0.29 11.7 4.3 0.19 12.3 0.5 2.6 1 1 1 2 2 2 0 Phage holin family 2 DUF5643 PF18705.1 gi|159041434|ref|YP_001540686.1| - 0.002 18.1 0.3 0.0029 17.6 0.3 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5643) Takusan PF04822.13 gi|159041434|ref|YP_001540686.1| - 0.052 13.4 1.0 1.2 9.1 0.2 2.2 2 0 0 2 2 2 0 Takusan PI-TkoII_IV PF18714.1 gi|159041434|ref|YP_001540686.1| - 0.056 12.9 0.3 0.075 12.5 0.3 1.3 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV DASH_Dad2 PF08654.10 gi|159041434|ref|YP_001540686.1| - 0.06 13.8 0.1 2.6 8.5 0.0 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad2 DUF2600 PF10776.9 gi|159041434|ref|YP_001540686.1| - 0.068 12.0 0.5 0.09 11.6 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2600) DUF3418 PF11898.8 gi|159041434|ref|YP_001540686.1| - 0.076 11.7 0.1 0.093 11.4 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) PEP-utilisers_N PF05524.13 gi|159041435|ref|YP_001540687.1| - 0.011 15.9 0.4 0.022 14.9 0.4 1.5 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal Casc1_N PF15927.5 gi|159041435|ref|YP_001540687.1| - 0.012 15.3 3.2 0.025 14.3 1.8 1.7 1 1 1 2 2 2 0 Cancer susceptibility candidate 1 N-terminus CdvA PF18822.1 gi|159041435|ref|YP_001540687.1| - 0.013 15.3 6.3 0.094 12.5 6.3 2.0 1 1 0 1 1 1 0 CdvA-like coiled-coil domain Mitofilin PF09731.9 gi|159041435|ref|YP_001540687.1| - 0.014 14.3 3.0 0.015 14.2 3.0 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Prominin PF05478.11 gi|159041435|ref|YP_001540687.1| - 0.014 13.4 2.0 0.017 13.1 2.0 1.1 1 0 0 1 1 1 0 Prominin AAA_32 PF13654.6 gi|159041435|ref|YP_001540687.1| - 0.018 13.8 4.9 0.021 13.6 4.9 1.0 1 0 0 1 1 1 0 AAA domain CdiI_2 PF18593.1 gi|159041435|ref|YP_001540687.1| - 0.019 15.6 0.6 0.029 15.0 0.6 1.4 1 1 0 1 1 1 0 CdiI immunity protein PIN_12 PF16289.5 gi|159041435|ref|YP_001540687.1| - 0.064 13.8 4.3 0.084 13.4 4.3 1.1 1 0 0 1 1 1 0 PIN domain DDE_Tnp_1_3 PF13612.6 gi|159041435|ref|YP_001540687.1| - 0.068 13.2 1.3 0.093 12.7 1.3 1.3 1 1 0 1 1 1 0 Transposase DDE domain DUF883 PF05957.13 gi|159041435|ref|YP_001540687.1| - 0.16 12.6 3.0 0.24 12.0 2.8 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF948 PF06103.11 gi|159041435|ref|YP_001540687.1| - 0.18 12.1 0.6 0.78 10.0 0.3 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DnaI_N PF07319.11 gi|159041435|ref|YP_001540687.1| - 0.21 12.3 2.7 0.33 11.7 0.8 2.0 1 1 1 2 2 2 0 Primosomal protein DnaI N-terminus RNase_J_C PF17770.1 gi|159041435|ref|YP_001540687.1| - 0.27 12.3 3.1 3.4 8.8 0.1 2.8 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain DUF3896 PF13035.6 gi|159041435|ref|YP_001540687.1| - 0.36 11.0 3.8 0.4 10.9 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3896) DUF1829 PF08862.10 gi|159041435|ref|YP_001540687.1| - 0.39 11.2 2.7 0.65 10.5 0.6 2.0 1 1 1 2 2 2 0 Domain of unknown function DUF1829 DUF460 PF04312.13 gi|159041436|ref|YP_001540688.1| - 9.3e-49 164.8 2.8 1.8e-48 163.8 0.3 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|159041436|ref|YP_001540688.1| - 0.0019 18.5 0.0 0.0052 17.1 0.0 1.7 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_2 PF03464.15 gi|159041436|ref|YP_001540688.1| - 0.0073 16.6 0.1 0.025 14.9 0.1 1.9 1 0 0 1 1 1 1 eRF1 domain 2 TSC22 PF01166.18 gi|159041436|ref|YP_001540688.1| - 0.0078 16.5 2.0 0.034 14.5 2.0 2.1 1 0 0 1 1 1 1 TSC-22/dip/bun family THUMP PF02926.17 gi|159041436|ref|YP_001540688.1| - 0.0086 16.2 3.4 0.019 15.1 0.8 2.9 2 1 2 4 4 4 1 THUMP domain HAP1_N PF04849.13 gi|159041436|ref|YP_001540688.1| - 0.014 14.6 5.8 0.023 13.9 5.8 1.3 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Fez1 PF06818.15 gi|159041436|ref|YP_001540688.1| - 0.026 15.0 3.6 0.055 13.9 3.6 1.5 1 0 0 1 1 1 0 Fez1 DUF5595 PF18077.1 gi|159041436|ref|YP_001540688.1| - 0.026 14.6 8.6 0.38 10.8 1.2 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF5595) Lebercilin PF15619.6 gi|159041436|ref|YP_001540688.1| - 0.037 13.7 6.8 0.082 12.6 6.8 1.5 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DivIC PF04977.15 gi|159041436|ref|YP_001540688.1| - 0.52 10.1 5.5 0.083 12.7 0.7 2.2 2 0 0 2 2 2 0 Septum formation initiator DUF4988 PF16378.5 gi|159041436|ref|YP_001540688.1| - 0.57 9.8 3.5 15 5.2 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function Glu-tRNAGln PF02686.15 gi|159041436|ref|YP_001540688.1| - 2.3 8.6 4.6 9.8 6.6 0.0 3.7 4 0 0 4 4 4 0 Glu-tRNAGln amidotransferase C subunit bZIP_1 PF00170.21 gi|159041436|ref|YP_001540688.1| - 3.7 7.7 9.9 0.78 9.9 2.8 2.7 2 0 0 2 2 2 0 bZIP transcription factor Methyltransf_11 PF08241.12 gi|159041437|ref|YP_001540689.1| - 5.3e-19 68.7 0.0 1.2e-18 67.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041437|ref|YP_001540689.1| - 1.5e-14 54.5 0.0 2.4e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159041437|ref|YP_001540689.1| - 1.8e-14 53.9 0.0 2.5e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041437|ref|YP_001540689.1| - 2.8e-13 49.9 0.0 4.6e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159041437|ref|YP_001540689.1| - 4.9e-11 42.4 0.0 8.8e-11 41.6 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|159041437|ref|YP_001540689.1| - 1.3e-09 38.7 0.0 2.7e-09 37.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|159041437|ref|YP_001540689.1| - 1.1e-06 28.4 0.0 1.8e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.12 gi|159041437|ref|YP_001540689.1| - 0.00018 20.7 0.0 0.0006 19.0 0.0 1.7 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|159041437|ref|YP_001540689.1| - 0.00028 20.8 0.0 0.00044 20.2 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|159041437|ref|YP_001540689.1| - 0.003 16.2 0.0 0.0031 16.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF5606 PF18347.1 gi|159041437|ref|YP_001540689.1| - 0.0043 17.2 0.0 0.021 15.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF5606) MTS PF05175.14 gi|159041437|ref|YP_001540689.1| - 0.015 14.8 0.0 0.08 12.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase small domain CheR PF01739.18 gi|159041437|ref|YP_001540689.1| - 0.039 13.4 0.0 2.3 7.7 0.0 2.2 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain NNMT_PNMT_TEMT PF01234.17 gi|159041437|ref|YP_001540689.1| - 0.054 12.7 0.0 0.12 11.5 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_9 PF08003.11 gi|159041437|ref|YP_001540689.1| - 0.06 12.3 0.1 0.17 10.8 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) AdoMet_Synthase PF01941.19 gi|159041438|ref|YP_001540690.1| - 5.8e-172 571.9 3.2 6.5e-172 571.8 3.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|159041438|ref|YP_001540690.1| - 0.093 13.4 0.3 0.76 10.5 0.0 2.6 2 1 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain LSM PF01423.22 gi|159041439|ref|YP_001540691.1| - 4.1e-19 68.0 1.5 4.8e-19 67.8 1.5 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|159041439|ref|YP_001540691.1| - 0.018 15.1 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Xan_ur_permease PF00860.20 gi|159041440|ref|YP_001540692.1| - 4.5e-25 88.2 52.1 2.8e-23 82.3 52.1 2.2 1 1 0 1 1 1 1 Permease family Epimerase PF01370.21 gi|159041441|ref|YP_001540693.1| - 3.5e-36 124.9 0.0 4.2e-36 124.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159041441|ref|YP_001540693.1| - 1.1e-35 123.7 0.0 1.4e-35 123.3 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|159041441|ref|YP_001540693.1| - 1.6e-14 53.6 0.0 1.8e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|159041441|ref|YP_001540693.1| - 1.9e-08 33.8 0.0 2.7e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|159041441|ref|YP_001540693.1| - 4.1e-08 32.7 0.1 9.5e-08 31.5 0.1 1.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|159041441|ref|YP_001540693.1| - 8.8e-07 29.0 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|159041441|ref|YP_001540693.1| - 5.4e-06 25.8 0.0 0.00021 20.5 0.0 2.1 1 1 0 2 2 2 1 Male sterility protein KR PF08659.10 gi|159041441|ref|YP_001540693.1| - 0.0011 18.9 0.1 0.0027 17.6 0.1 1.6 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|159041441|ref|YP_001540693.1| - 0.0046 16.5 0.0 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|159041441|ref|YP_001540693.1| - 0.03 13.8 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|159041442|ref|YP_001540694.1| - 1.5e-57 194.9 0.0 1.8e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159041442|ref|YP_001540694.1| - 2.8e-48 164.0 0.0 3.3e-48 163.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159041442|ref|YP_001540694.1| - 1.9e-09 37.7 0.0 3.1e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 KR domain SRP54 PF00448.22 gi|159041443|ref|YP_001540695.1| - 9.6e-68 227.7 0.0 1.2e-67 227.3 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|159041443|ref|YP_001540695.1| - 9.4e-11 41.8 0.9 2.6e-10 40.4 0.9 1.8 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|159041443|ref|YP_001540695.1| - 1.8e-05 24.6 0.1 2.8e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159041443|ref|YP_001540695.1| - 7e-05 23.3 0.1 0.0032 17.9 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159041443|ref|YP_001540695.1| - 0.00019 21.7 0.0 0.00074 19.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain cobW PF02492.19 gi|159041443|ref|YP_001540695.1| - 0.0013 18.3 0.1 0.0052 16.4 0.1 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|159041443|ref|YP_001540695.1| - 0.0015 18.9 0.0 0.0047 17.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|159041443|ref|YP_001540695.1| - 0.0017 18.5 0.1 0.0075 16.3 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|159041443|ref|YP_001540695.1| - 0.0019 18.5 0.0 0.0037 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|159041443|ref|YP_001540695.1| - 0.0023 17.2 0.0 0.0065 15.8 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin MobB PF03205.14 gi|159041443|ref|YP_001540695.1| - 0.003 17.5 1.5 0.071 13.0 0.1 2.5 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|159041443|ref|YP_001540695.1| - 0.0039 17.2 0.1 0.068 13.2 0.0 2.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peripla_BP_4 PF13407.6 gi|159041443|ref|YP_001540695.1| - 0.0043 16.7 0.2 0.17 11.4 0.1 2.3 1 1 1 2 2 2 1 Periplasmic binding protein domain NTPase_1 PF03266.15 gi|159041443|ref|YP_001540695.1| - 0.0046 16.9 0.3 0.064 13.2 0.3 2.3 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.6 gi|159041443|ref|YP_001540695.1| - 0.019 15.3 0.0 0.034 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|159041443|ref|YP_001540695.1| - 0.02 14.4 0.0 0.096 12.2 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region CLP1_P PF16575.5 gi|159041443|ref|YP_001540695.1| - 0.026 14.3 0.1 0.93 9.3 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|159041443|ref|YP_001540695.1| - 0.03 14.1 0.0 0.094 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|159041443|ref|YP_001540695.1| - 0.037 14.5 0.3 0.21 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|159041443|ref|YP_001540695.1| - 0.067 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|159041443|ref|YP_001540695.1| - 0.068 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain APS_kinase PF01583.20 gi|159041443|ref|YP_001540695.1| - 0.074 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase IstB_IS21 PF01695.17 gi|159041443|ref|YP_001540695.1| - 0.09 12.5 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_11 PF13086.6 gi|159041443|ref|YP_001540695.1| - 0.099 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|159041443|ref|YP_001540695.1| - 0.12 12.9 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Prefoldin PF02996.17 gi|159041444|ref|YP_001540696.1| - 2.4e-22 79.1 1.4 2.4e-22 79.1 1.4 1.8 1 1 1 2 2 2 1 Prefoldin subunit PI3K_P85_iSH2 PF16454.5 gi|159041444|ref|YP_001540696.1| - 0.00016 21.3 3.7 0.0021 17.7 3.7 2.0 1 1 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ZapB PF06005.12 gi|159041444|ref|YP_001540696.1| - 0.0014 19.0 2.9 0.012 16.1 0.3 2.0 2 0 0 2 2 2 1 Cell division protein ZapB Taxilin PF09728.9 gi|159041444|ref|YP_001540696.1| - 0.0018 17.6 0.9 0.018 14.3 0.3 2.0 2 0 0 2 2 2 1 Myosin-like coiled-coil protein ABC_tran_CTD PF16326.5 gi|159041444|ref|YP_001540696.1| - 0.009 16.2 1.7 6.8 7.0 0.4 3.0 3 0 0 3 3 3 0 ABC transporter C-terminal domain Tektin PF03148.14 gi|159041444|ref|YP_001540696.1| - 0.014 14.2 1.5 0.56 8.9 0.3 2.0 2 0 0 2 2 2 0 Tektin family TPR_MLP1_2 PF07926.12 gi|159041444|ref|YP_001540696.1| - 0.015 15.4 2.1 2.5 8.2 0.1 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein TSKS PF15358.6 gi|159041444|ref|YP_001540696.1| - 0.022 13.2 0.5 0.41 9.0 0.1 2.0 2 0 0 2 2 2 0 Testis-specific serine kinase substrate DUF4795 PF16043.5 gi|159041444|ref|YP_001540696.1| - 0.022 14.4 1.0 0.42 10.2 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) BLOC1_2 PF10046.9 gi|159041444|ref|YP_001540696.1| - 0.023 15.0 4.8 0.21 11.9 1.0 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prefoldin_2 PF01920.20 gi|159041444|ref|YP_001540696.1| - 0.028 14.4 5.1 0.18 11.8 0.8 2.2 1 1 1 2 2 2 0 Prefoldin subunit Nsp1_C PF05064.13 gi|159041444|ref|YP_001540696.1| - 0.033 14.0 0.6 4.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DNA_topoisoIV PF00521.20 gi|159041444|ref|YP_001540696.1| - 0.033 13.1 0.8 0.04 12.8 0.8 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A T3SS_needle_E PF08988.10 gi|159041444|ref|YP_001540696.1| - 0.051 13.7 0.7 0.79 9.9 0.1 2.5 2 1 1 3 3 3 0 Type III secretion system, cytoplasmic E component of needle Syntaxin-6_N PF09177.11 gi|159041444|ref|YP_001540696.1| - 0.053 14.1 2.3 0.55 10.8 0.5 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Spectrin PF00435.21 gi|159041444|ref|YP_001540696.1| - 0.053 14.0 2.7 1.5 9.4 0.1 2.4 2 1 0 2 2 2 0 Spectrin repeat ArAE_2 PF10334.9 gi|159041444|ref|YP_001540696.1| - 0.054 13.3 0.2 0.15 11.9 0.0 1.7 2 0 0 2 2 2 0 Aromatic acid exporter family member 2 LIF_OSM PF01291.17 gi|159041444|ref|YP_001540696.1| - 0.073 13.2 0.2 0.13 12.4 0.2 1.4 1 1 0 1 1 1 0 LIF / OSM family COG5 PF10392.9 gi|159041444|ref|YP_001540696.1| - 0.087 13.0 2.3 4.9 7.3 0.1 2.1 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Spc7 PF08317.11 gi|159041444|ref|YP_001540696.1| - 0.089 11.7 3.4 0.85 8.4 0.5 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Snf7 PF03357.21 gi|159041444|ref|YP_001540696.1| - 0.1 12.2 3.6 0.52 9.9 0.6 2.1 2 0 0 2 2 2 0 Snf7 DUF1786 PF08735.10 gi|159041444|ref|YP_001540696.1| - 0.12 11.6 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative pyruvate format-lyase activating enzyme (DUF1786) DUF4988 PF16378.5 gi|159041444|ref|YP_001540696.1| - 0.12 12.0 2.4 0.13 11.9 1.0 1.6 1 1 1 2 2 2 0 Domain of unknown function HMMR_N PF15905.5 gi|159041444|ref|YP_001540696.1| - 0.15 11.5 1.9 0.37 10.2 0.3 1.9 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal CCDC142 PF14923.6 gi|159041444|ref|YP_001540696.1| - 0.15 10.8 2.1 0.11 11.3 0.6 1.4 2 0 0 2 2 2 0 Coiled-coil protein 142 Occludin_ELL PF07303.13 gi|159041444|ref|YP_001540696.1| - 0.16 12.7 0.1 28 5.5 0.0 2.1 2 0 0 2 2 2 0 Occludin homology domain Sec34 PF04136.15 gi|159041444|ref|YP_001540696.1| - 0.17 11.8 1.9 2.4 8.0 1.2 2.0 2 0 0 2 2 2 0 Sec34-like family FTA4 PF13093.6 gi|159041444|ref|YP_001540696.1| - 0.18 11.7 4.9 0.63 9.9 4.2 1.9 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Fib_alpha PF08702.10 gi|159041444|ref|YP_001540696.1| - 0.21 11.8 2.1 14 5.8 0.8 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin PF00261.20 gi|159041444|ref|YP_001540696.1| - 0.41 10.0 4.7 0.65 9.3 1.4 2.0 2 0 0 2 2 2 0 Tropomyosin Tht1 PF04163.12 gi|159041444|ref|YP_001540696.1| - 0.43 9.3 2.7 1.7 7.3 2.7 1.7 1 1 0 1 1 1 0 Tht1-like nuclear fusion protein DUF4298 PF14131.6 gi|159041444|ref|YP_001540696.1| - 0.55 10.2 2.8 20 5.2 0.6 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4298) V_ATPase_I PF01496.19 gi|159041444|ref|YP_001540696.1| - 0.87 7.4 4.1 0.6 8.0 0.9 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family BRE1 PF08647.11 gi|159041444|ref|YP_001540696.1| - 1 9.4 5.9 1.2 9.2 2.0 2.1 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase Spc24 PF08286.11 gi|159041444|ref|YP_001540696.1| - 1.4 9.2 5.5 17 5.7 1.6 2.4 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 HAUS-augmin3 PF14932.6 gi|159041444|ref|YP_001540696.1| - 3 7.3 6.4 4.6 6.8 1.2 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Ribosomal_L18A PF01775.17 gi|159041445|ref|YP_001540697.1| - 4.1e-10 39.8 0.0 6.5e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Flagellar_put PF12611.8 gi|159041445|ref|YP_001540697.1| - 0.033 13.9 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative flagellar Actin PF00022.19 gi|159041446|ref|YP_001540698.1| - 7e-13 48.0 0.1 4.2e-07 28.9 0.0 2.2 1 1 0 2 2 2 2 Actin HTH_10 PF04967.12 gi|159041447|ref|YP_001540699.1| - 1.2e-18 66.6 0.0 1.9e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|159041447|ref|YP_001540699.1| - 1.6e-06 27.5 0.1 5.3e-06 25.9 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|159041447|ref|YP_001540699.1| - 2.8e-05 23.8 0.0 0.00015 21.5 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|159041447|ref|YP_001540699.1| - 3.4e-05 23.4 0.4 0.092 12.4 0.0 3.2 3 0 0 3 3 3 2 Sigma-70, region 4 GerE PF00196.19 gi|159041447|ref|YP_001540699.1| - 4.3e-05 23.0 0.3 0.00043 19.8 0.3 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|159041447|ref|YP_001540699.1| - 7.4e-05 22.5 0.2 0.00015 21.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|159041447|ref|YP_001540699.1| - 0.00041 19.8 0.0 0.0014 18.2 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|159041447|ref|YP_001540699.1| - 0.0013 18.8 0.3 0.014 15.4 0.0 2.6 3 1 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|159041447|ref|YP_001540699.1| - 0.0022 17.9 0.0 0.0051 16.7 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|159041447|ref|YP_001540699.1| - 0.018 14.9 0.0 0.059 13.3 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|159041447|ref|YP_001540699.1| - 0.021 14.6 0.0 0.076 12.8 0.0 2.0 1 1 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 gi|159041447|ref|YP_001540699.1| - 0.023 14.4 0.1 0.06 13.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|159041447|ref|YP_001540699.1| - 0.024 14.7 0.1 0.19 11.9 0.0 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|159041447|ref|YP_001540699.1| - 0.032 14.0 0.0 0.073 12.8 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain LacI PF00356.21 gi|159041447|ref|YP_001540699.1| - 0.074 12.9 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_22 PF13309.6 gi|159041447|ref|YP_001540699.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_35 PF13693.6 gi|159041447|ref|YP_001540699.1| - 0.1 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SBP_bac_5 PF00496.22 gi|159041448|ref|YP_001540700.1| - 5.4e-35 121.1 9.9 8.5e-35 120.4 9.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MGC-24 PF05283.11 gi|159041448|ref|YP_001540700.1| - 0.36 11.3 15.3 0.86 10.0 15.3 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin RIFIN PF02009.16 gi|159041448|ref|YP_001540700.1| - 0.7 9.7 10.6 1.1 9.1 10.6 1.2 1 0 0 1 1 1 0 Rifin Stevor PF17410.2 gi|159041448|ref|YP_001540700.1| - 3.8 7.0 9.5 7.9 5.9 9.5 1.5 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame AJAP1_PANP_C PF15298.6 gi|159041448|ref|YP_001540700.1| - 6.8 6.8 25.2 16 5.6 25.2 1.5 1 0 0 1 1 1 0 AJAP1/PANP C-terminus NAD_binding_2 PF03446.15 gi|159041450|ref|YP_001540702.1| - 1.4e-24 87.1 0.1 2e-24 86.6 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|159041450|ref|YP_001540702.1| - 1.8e-20 73.4 0.0 2.9e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|159041450|ref|YP_001540702.1| - 1.2e-06 29.0 0.7 2.9e-06 27.8 0.2 1.8 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|159041450|ref|YP_001540702.1| - 3.5e-06 26.7 2.4 1.2e-05 25.0 0.1 2.6 2 1 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|159041450|ref|YP_001540702.1| - 6.7e-06 26.2 1.7 0.0027 17.7 1.1 2.9 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|159041450|ref|YP_001540702.1| - 7.8e-06 25.9 0.9 2.2e-05 24.5 0.1 2.1 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|159041450|ref|YP_001540702.1| - 1.3e-05 25.5 1.7 5e-05 23.5 0.5 2.5 2 1 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|159041450|ref|YP_001540702.1| - 0.00029 20.2 0.1 0.00044 19.6 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|159041450|ref|YP_001540702.1| - 0.00058 20.7 0.0 0.0044 17.8 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold AdoHcyase_NAD PF00670.21 gi|159041450|ref|YP_001540702.1| - 0.0019 18.3 0.3 0.0032 17.6 0.3 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.19 gi|159041450|ref|YP_001540702.1| - 0.0028 18.3 0.5 0.0059 17.3 0.5 1.6 1 0 0 1 1 1 1 CoA binding domain ApbA PF02558.16 gi|159041450|ref|YP_001540702.1| - 0.003 17.2 0.5 0.0076 15.9 0.5 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh PF00984.19 gi|159041450|ref|YP_001540702.1| - 0.013 15.7 0.4 0.055 13.7 0.0 2.2 3 0 0 3 3 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Rossmann-like PF10727.9 gi|159041450|ref|YP_001540702.1| - 0.016 15.1 0.2 0.032 14.1 0.2 1.6 1 0 0 1 1 1 0 Rossmann-like domain CbiA PF01656.23 gi|159041450|ref|YP_001540702.1| - 0.052 13.6 0.0 0.071 13.2 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2325 PF10087.9 gi|159041450|ref|YP_001540702.1| - 0.14 12.3 0.2 0.85 9.8 0.0 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) DDE_Tnp_Tn3 PF01526.17 gi|159041450|ref|YP_001540702.1| - 0.14 10.9 0.0 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 Tn3 transposase DDE domain RNB PF00773.19 gi|159041450|ref|YP_001540702.1| - 0.16 11.3 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 RNB domain Aminotran_1_2 PF00155.21 gi|159041451|ref|YP_001540703.1| - 2e-28 99.6 0.0 2.5e-28 99.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|159041451|ref|YP_001540703.1| - 0.0079 15.0 0.0 0.019 13.8 0.0 1.7 2 1 0 2 2 2 1 Alanine-glyoxylate amino-transferase DJ-1_PfpI PF01965.24 gi|159041453|ref|YP_001540705.1| - 2.3e-51 173.9 0.0 2.7e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|159041453|ref|YP_001540705.1| - 0.00025 20.8 0.0 0.0039 16.9 0.0 2.0 2 0 0 2 2 2 1 ThiJ/PfpI family-like GATase PF00117.28 gi|159041453|ref|YP_001540705.1| - 0.00071 19.4 0.0 0.00093 19.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Catalase_C PF18011.1 gi|159041453|ref|YP_001540705.1| - 0.0017 18.0 0.0 0.003 17.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|159041453|ref|YP_001540705.1| - 0.0028 17.3 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain TPR_1 PF00515.28 gi|159041454|ref|YP_001540706.1| - 1.6e-15 56.1 2.9 1.3e-06 27.9 0.2 3.5 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|159041454|ref|YP_001540706.1| - 1.5e-13 49.7 11.4 1.3e-06 28.0 0.3 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|159041454|ref|YP_001540706.1| - 4.3e-12 45.5 0.9 0.00013 22.1 0.0 3.5 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|159041454|ref|YP_001540706.1| - 1e-09 37.8 2.2 0.0011 19.0 0.1 4.0 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|159041454|ref|YP_001540706.1| - 2e-09 37.6 11.8 1.1e-05 25.6 0.8 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|159041454|ref|YP_001540706.1| - 5.8e-09 36.0 6.6 0.0082 16.9 0.3 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|159041454|ref|YP_001540706.1| - 9.2e-09 35.4 1.8 0.05 14.2 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|159041454|ref|YP_001540706.1| - 1.7e-08 34.8 1.4 0.00036 21.0 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|159041454|ref|YP_001540706.1| - 8.9e-08 31.6 0.7 0.00055 19.8 0.2 3.7 3 1 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|159041454|ref|YP_001540706.1| - 1.6e-07 31.4 1.1 1.6e-07 31.4 1.1 1.9 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|159041454|ref|YP_001540706.1| - 1.1e-06 28.2 5.0 0.0027 17.4 0.1 3.2 3 0 0 3 3 3 2 TPR repeat TPR_16 PF13432.6 gi|159041454|ref|YP_001540706.1| - 1.3e-06 28.9 5.7 0.015 16.0 0.3 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat BTAD PF03704.17 gi|159041454|ref|YP_001540706.1| - 0.0015 19.0 6.0 0.036 14.5 1.3 2.1 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|159041454|ref|YP_001540706.1| - 0.0024 18.3 1.3 14 6.6 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|159041454|ref|YP_001540706.1| - 0.0096 15.8 2.7 0.28 11.1 0.3 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|159041454|ref|YP_001540706.1| - 0.02 14.3 0.0 0.074 12.5 0.0 2.0 2 1 1 3 3 3 0 Coatomer epsilon subunit DUF4326 PF14216.6 gi|159041454|ref|YP_001540706.1| - 0.1 13.4 0.8 5 7.9 0.0 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4326) TPR_9 PF13371.6 gi|159041454|ref|YP_001540706.1| - 0.12 12.5 2.2 3 8.1 0.4 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat MIT PF04212.18 gi|159041454|ref|YP_001540706.1| - 0.13 12.4 2.7 1.5 9.0 0.1 3.1 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain Polbeta PF18765.1 gi|159041455|ref|YP_001540707.1| - 7.9e-09 35.5 0.0 1.1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|159041455|ref|YP_001540707.1| - 2.3e-07 31.0 0.1 3.1e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain SAM_LFY PF01698.16 gi|159041455|ref|YP_001540707.1| - 0.007 16.3 0.1 0.019 14.9 0.0 1.7 2 0 0 2 2 2 1 Floricaula / Leafy protein SAM domain SMODS PF18144.1 gi|159041455|ref|YP_001540707.1| - 0.025 14.7 0.0 0.1 12.8 0.0 2.2 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain PAS_3 PF08447.12 gi|159041455|ref|YP_001540707.1| - 0.036 14.4 0.0 0.058 13.7 0.0 1.4 1 0 0 1 1 1 0 PAS fold NTF-like PF14540.6 gi|159041455|ref|YP_001540707.1| - 0.059 13.1 0.1 0.076 12.8 0.1 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase-like DUF294 PF03445.13 gi|159041455|ref|YP_001540707.1| - 0.07 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|159041456|ref|YP_001540708.1| - 1.8e-07 31.3 0.0 2.8e-07 30.7 0.0 1.3 1 1 0 1 1 1 1 HEPN domain MCD_N PF17408.2 gi|159041456|ref|YP_001540708.1| - 0.15 12.2 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain tRNA-synt_2b PF00587.25 gi|159041457|ref|YP_001540709.1| - 6.9e-33 114.1 0.0 1.1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|159041457|ref|YP_001540709.1| - 4.4e-20 71.9 1.4 8.1e-20 71.1 1.4 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Takusan PF04822.13 gi|159041457|ref|YP_001540709.1| - 0.0089 15.9 0.8 0.0089 15.9 0.8 1.6 2 0 0 2 2 2 1 Takusan CENP-F_leu_zip PF10473.9 gi|159041457|ref|YP_001540709.1| - 0.02 14.9 1.5 0.038 14.0 1.5 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FapA PF03961.13 gi|159041457|ref|YP_001540709.1| - 0.049 12.2 0.2 0.071 11.7 0.2 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A ALIX_LYPXL_bnd PF13949.6 gi|159041457|ref|YP_001540709.1| - 0.099 11.9 0.5 0.18 11.1 0.5 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV MCM_N PF14551.6 gi|159041457|ref|YP_001540709.1| - 0.11 13.1 0.1 0.28 11.8 0.1 1.6 1 0 0 1 1 1 0 MCM N-terminal domain Nop16 PF09420.10 gi|159041457|ref|YP_001540709.1| - 0.22 11.6 2.2 0.7 9.9 0.1 2.0 2 0 0 2 2 2 0 Ribosome biogenesis protein Nop16 APG6_N PF17675.1 gi|159041457|ref|YP_001540709.1| - 0.23 12.0 1.1 0.42 11.1 1.1 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region Osmo_CC PF08946.10 gi|159041457|ref|YP_001540709.1| - 0.37 11.1 1.5 0.44 10.8 0.2 1.7 2 0 0 2 2 2 0 Osmosensory transporter coiled coil T2SSE PF00437.20 gi|159041458|ref|YP_001540710.1| - 6.7e-29 100.8 0.2 1.1e-28 100.1 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|159041458|ref|YP_001540710.1| - 0.00084 18.7 0.0 0.002 17.4 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|159041458|ref|YP_001540710.1| - 0.0017 18.4 0.0 0.003 17.6 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_7 PF12775.7 gi|159041458|ref|YP_001540710.1| - 0.004 16.7 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region cobW PF02492.19 gi|159041458|ref|YP_001540710.1| - 0.01 15.4 0.0 0.024 14.2 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2795 PF11387.8 gi|159041458|ref|YP_001540710.1| - 0.012 15.8 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) APS_kinase PF01583.20 gi|159041458|ref|YP_001540710.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA PF00004.29 gi|159041458|ref|YP_001540710.1| - 0.019 15.4 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|159041458|ref|YP_001540710.1| - 0.022 15.3 0.0 0.04 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|159041458|ref|YP_001540710.1| - 0.025 14.3 0.1 0.051 13.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArsA_ATPase PF02374.15 gi|159041458|ref|YP_001540710.1| - 0.037 13.2 0.1 0.077 12.2 0.1 1.5 1 1 0 1 1 1 0 Anion-transporting ATPase AAA_31 PF13614.6 gi|159041458|ref|YP_001540710.1| - 0.041 13.8 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|159041458|ref|YP_001540710.1| - 0.041 13.6 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|159041458|ref|YP_001540710.1| - 0.05 14.1 0.0 0.092 13.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PhoH PF02562.16 gi|159041458|ref|YP_001540710.1| - 0.077 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_23 PF13476.6 gi|159041458|ref|YP_001540710.1| - 0.084 13.4 0.1 0.14 12.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|159041458|ref|YP_001540710.1| - 0.095 12.7 0.1 0.2 11.7 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|159041458|ref|YP_001540710.1| - 0.097 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain COX1 PF00115.20 gi|159041460|ref|YP_001540712.1| - 0.0063 15.4 1.6 0.0064 15.4 1.6 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I ABC2_membrane_4 PF12730.7 gi|159041460|ref|YP_001540712.1| - 0.028 14.4 0.9 0.03 14.3 0.9 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF5337 PF17272.2 gi|159041460|ref|YP_001540712.1| - 0.037 13.9 0.5 0.042 13.7 0.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5337) Insulin_TMD PF17870.1 gi|159041460|ref|YP_001540712.1| - 0.072 13.2 7.5 0.59 10.2 0.3 2.1 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment FUSC-like PF12805.7 gi|159041460|ref|YP_001540712.1| - 1.1 8.3 3.2 1.3 8.0 3.2 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS zf-RRN7 PF11781.8 gi|159041461|ref|YP_001540713.1| - 2.2e-09 36.9 0.5 2.9e-09 36.5 0.5 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_ribbon_recom PF13408.6 gi|159041461|ref|YP_001540713.1| - 0.00062 20.2 1.8 0.042 14.4 0.1 2.1 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain zf-NADH-PPase PF09297.11 gi|159041461|ref|YP_001540713.1| - 0.00078 19.0 0.3 0.091 12.4 0.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain Gin PF10764.9 gi|159041461|ref|YP_001540713.1| - 0.0022 17.9 0.5 0.0032 17.4 0.5 1.4 1 1 0 1 1 1 1 Inhibitor of sigma-G Gin Nudix_N_2 PF14803.6 gi|159041461|ref|YP_001540713.1| - 0.0073 16.2 0.5 0.31 11.0 0.1 2.2 2 0 0 2 2 2 1 Nudix N-terminal zf-UDP PF14569.6 gi|159041461|ref|YP_001540713.1| - 0.0097 16.0 0.1 0.01 16.0 0.1 1.1 1 0 0 1 1 1 1 Zinc-binding RING-finger Herpes_UL49_1 PF03117.14 gi|159041461|ref|YP_001540713.1| - 0.011 15.0 1.9 0.058 12.7 0.1 2.0 1 1 1 2 2 2 0 UL49 family TF_Zn_Ribbon PF08271.12 gi|159041461|ref|YP_001540713.1| - 0.026 14.0 5.3 0.2 11.2 2.8 2.7 2 1 1 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|159041461|ref|YP_001540713.1| - 0.032 13.6 1.5 0.46 10.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|159041461|ref|YP_001540713.1| - 0.035 14.1 0.5 0.13 12.3 0.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|159041461|ref|YP_001540713.1| - 0.036 14.0 0.8 0.074 13.0 0.7 1.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|159041461|ref|YP_001540713.1| - 0.037 14.3 2.7 0.37 11.1 0.3 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase eIF-5_eIF-2B PF01873.17 gi|159041461|ref|YP_001540713.1| - 0.044 13.7 0.4 0.06 13.2 0.4 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 DNA_RNApol_7kD PF03604.13 gi|159041461|ref|YP_001540713.1| - 0.048 13.3 2.2 0.094 12.4 2.2 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit PknG_rubred PF16919.5 gi|159041461|ref|YP_001540713.1| - 0.06 13.5 2.9 0.17 12.1 0.1 2.1 1 1 1 2 2 2 0 Protein kinase G rubredoxin domain RNA_POL_M_15KD PF02150.16 gi|159041461|ref|YP_001540713.1| - 0.097 12.6 0.7 9.8 6.1 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit VSP PF03302.13 gi|159041461|ref|YP_001540713.1| - 0.11 11.3 0.8 0.13 11.1 0.8 1.1 1 0 0 1 1 1 0 Giardia variant-specific surface protein zinc_ribbon_2 PF13240.6 gi|159041461|ref|YP_001540713.1| - 0.12 12.2 2.6 0.42 10.4 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|159041461|ref|YP_001540713.1| - 0.13 12.2 1.0 0.25 11.3 1.0 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RanBP PF00641.18 gi|159041461|ref|YP_001540713.1| - 0.69 9.3 5.0 0.86 9.0 0.6 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Abhydrolase_5 PF12695.7 gi|159041463|ref|YP_001540715.1| - 1.9e-05 24.5 0.1 2.5e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|159041463|ref|YP_001540715.1| - 2e-05 24.5 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.20 gi|159041463|ref|YP_001540715.1| - 0.00016 21.5 0.1 0.00036 20.2 0.1 1.6 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|159041463|ref|YP_001540715.1| - 0.00016 21.1 0.0 0.0024 17.2 0.0 2.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DUF3530 PF12048.8 gi|159041463|ref|YP_001540715.1| - 0.00052 19.5 0.1 0.00072 19.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3530) Abhydrolase_3 PF07859.13 gi|159041463|ref|YP_001540715.1| - 0.0019 18.1 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|159041463|ref|YP_001540715.1| - 0.0032 18.1 0.0 0.0038 17.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|159041463|ref|YP_001540715.1| - 0.0069 16.0 0.0 0.014 14.9 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 gi|159041463|ref|YP_001540715.1| - 0.0073 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Ser_hydrolase PF06821.13 gi|159041463|ref|YP_001540715.1| - 0.011 15.6 0.0 0.032 14.1 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase DUF3089 PF11288.8 gi|159041463|ref|YP_001540715.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) HD PF01966.22 gi|159041464|ref|YP_001540716.1| - 2.8e-05 24.3 0.1 8.4e-05 22.8 0.1 1.9 1 0 0 1 1 1 1 HD domain NAD_binding_8 PF13450.6 gi|159041465|ref|YP_001540717.1| - 0.017 15.4 0.0 0.052 13.8 0.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain SE PF08491.10 gi|159041465|ref|YP_001540717.1| - 0.068 12.2 0.1 0.1 11.6 0.1 1.2 1 0 0 1 1 1 0 Squalene epoxidase tRNA-synt_1b PF00579.25 gi|159041466|ref|YP_001540718.1| - 6.8e-41 140.5 0.0 9.9e-41 140.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) eIF-5a PF01287.20 gi|159041467|ref|YP_001540719.1| - 6e-13 48.7 0.0 9.3e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|159041467|ref|YP_001540719.1| - 1.6e-07 31.3 0.2 3.6e-07 30.1 0.1 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|159041467|ref|YP_001540719.1| - 0.00063 19.7 0.0 0.0036 17.3 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain ABC_tran PF00005.27 gi|159041468|ref|YP_001540720.1| - 1.4e-29 103.3 0.0 2.1e-29 102.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041468|ref|YP_001540720.1| - 5e-06 26.5 0.0 0.088 12.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|159041468|ref|YP_001540720.1| - 0.0081 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|159041468|ref|YP_001540720.1| - 0.01 16.1 0.2 0.056 13.7 0.2 2.2 1 1 1 2 2 2 0 AAA domain AAA PF00004.29 gi|159041468|ref|YP_001540720.1| - 0.021 15.2 0.3 0.14 12.5 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|159041468|ref|YP_001540720.1| - 0.04 14.3 0.0 0.061 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|159041468|ref|YP_001540720.1| - 0.072 13.4 0.1 0.32 11.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|159041468|ref|YP_001540720.1| - 0.079 13.5 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|159041468|ref|YP_001540720.1| - 0.088 12.2 0.0 0.42 10.0 0.0 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|159041468|ref|YP_001540720.1| - 0.11 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein BPD_transp_1 PF00528.22 gi|159041469|ref|YP_001540721.1| - 4e-16 59.3 55.8 2.6e-12 46.8 18.1 3.5 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|159041469|ref|YP_001540721.1| - 1.9 8.5 6.6 0.69 9.9 0.2 3.5 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Cytidylate_kin2 PF13189.6 gi|159041470|ref|YP_001540722.1| - 2.4e-25 89.7 3.8 2.4e-14 53.9 1.1 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 gi|159041470|ref|YP_001540722.1| - 2.3e-15 57.3 0.2 3e-15 56.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|159041470|ref|YP_001540722.1| - 1.1e-13 51.5 2.6 2.6e-07 30.6 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|159041470|ref|YP_001540722.1| - 6e-13 49.4 0.2 1.2e-12 48.4 0.2 1.5 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|159041470|ref|YP_001540722.1| - 1e-06 28.6 0.5 0.00012 21.8 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase SKI PF01202.22 gi|159041470|ref|YP_001540722.1| - 1.1e-05 25.6 0.3 9.1e-05 22.6 0.3 2.1 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|159041470|ref|YP_001540722.1| - 2.4e-05 24.3 0.1 0.00064 19.6 0.0 2.2 1 1 1 2 2 2 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|159041470|ref|YP_001540722.1| - 0.0002 21.5 0.1 0.00058 20.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|159041470|ref|YP_001540722.1| - 0.00059 20.1 0.2 0.00088 19.5 0.2 1.4 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|159041470|ref|YP_001540722.1| - 0.00094 19.0 1.2 0.044 13.5 0.1 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family ADK PF00406.22 gi|159041470|ref|YP_001540722.1| - 0.0027 17.8 0.1 0.006 16.7 0.0 1.6 1 1 0 1 1 1 1 Adenylate kinase AAA_16 PF13191.6 gi|159041470|ref|YP_001540722.1| - 0.0028 18.0 0.0 0.0038 17.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RHH_4 PF13467.6 gi|159041470|ref|YP_001540722.1| - 0.004 17.0 0.4 0.19 11.7 0.1 2.5 2 0 0 2 2 2 1 Ribbon-helix-helix domain Zeta_toxin PF06414.12 gi|159041470|ref|YP_001540722.1| - 0.012 14.9 0.1 0.023 14.0 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|159041470|ref|YP_001540722.1| - 0.014 15.8 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159041470|ref|YP_001540722.1| - 0.03 14.6 0.0 0.04 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain CPT PF07931.12 gi|159041470|ref|YP_001540722.1| - 0.032 14.1 0.2 0.35 10.7 0.2 2.2 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Thymidylate_kin PF02223.17 gi|159041470|ref|YP_001540722.1| - 0.041 13.6 1.1 0.34 10.6 0.3 2.4 2 1 0 2 2 2 0 Thymidylate kinase TsaE PF02367.17 gi|159041470|ref|YP_001540722.1| - 0.045 13.8 0.2 0.095 12.7 0.1 1.7 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KTI12 PF08433.10 gi|159041470|ref|YP_001540722.1| - 0.084 12.3 0.3 0.34 10.3 0.3 1.9 1 1 0 1 1 1 0 Chromatin associated protein KTI12 EF_assoc_1 PF08355.12 gi|159041470|ref|YP_001540722.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 EF hand associated Glyco_hydro_35 PF01301.19 gi|159041472|ref|YP_001540724.1| - 3.1e-67 227.4 0.0 4.5e-67 226.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.15 gi|159041472|ref|YP_001540724.1| - 1.8e-08 34.1 0.0 5.3e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 Beta-galactosidase BetaGal_dom4_5 PF13364.6 gi|159041472|ref|YP_001540724.1| - 3e-05 24.5 0.0 0.023 15.3 0.0 2.7 2 0 0 2 2 2 2 Beta-galactosidase jelly roll domain Sipho_tail PF05709.11 gi|159041472|ref|YP_001540724.1| - 0.072 12.5 0.2 0.27 10.6 0.2 1.9 1 1 0 1 1 1 0 Phage tail protein DegT_DnrJ_EryC1 PF01041.17 gi|159041473|ref|YP_001540725.1| - 3.8e-93 312.7 0.0 4.5e-93 312.4 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|159041473|ref|YP_001540725.1| - 8.2e-05 22.0 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Adhesin_P1_N PF18652.1 gi|159041473|ref|YP_001540725.1| - 0.15 12.1 0.1 0.32 11.1 0.1 1.5 1 0 0 1 1 1 0 Adhesin P1 N-terminal domain Amidohydro_2 PF04909.14 gi|159041474|ref|YP_001540726.1| - 0.00052 19.9 0.0 0.00073 19.4 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_2 PF04909.14 gi|159041475|ref|YP_001540727.1| - 2.1e-27 96.7 0.0 2.8e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase TIP49 PF06068.13 gi|159041476|ref|YP_001540728.1| - 2.1e-129 431.7 1.0 2.7e-129 431.4 1.0 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|159041476|ref|YP_001540728.1| - 1.4e-25 89.2 0.5 1.1e-24 86.3 0.1 2.5 3 0 0 3 3 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|159041476|ref|YP_001540728.1| - 4.3e-09 36.9 0.4 1.8e-07 31.6 0.1 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|159041476|ref|YP_001540728.1| - 1.5e-08 34.5 1.3 3.8e-06 26.7 0.0 3.1 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|159041476|ref|YP_001540728.1| - 6.7e-06 26.6 0.0 5.9e-05 23.5 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|159041476|ref|YP_001540728.1| - 8.4e-05 22.0 0.2 0.0002 20.8 0.2 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DnaB_C PF03796.15 gi|159041476|ref|YP_001540728.1| - 0.00066 19.1 0.0 0.0021 17.4 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Sigma54_activat PF00158.26 gi|159041476|ref|YP_001540728.1| - 0.00071 19.3 0.2 0.0023 17.6 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.6 gi|159041476|ref|YP_001540728.1| - 0.00074 19.7 0.1 0.0022 18.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|159041476|ref|YP_001540728.1| - 0.001 19.3 0.0 0.083 13.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|159041476|ref|YP_001540728.1| - 0.0025 17.3 0.1 0.054 13.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|159041476|ref|YP_001540728.1| - 0.0035 17.9 0.0 0.054 14.1 0.0 2.8 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|159041476|ref|YP_001540728.1| - 0.0038 17.0 0.1 0.0074 16.0 0.1 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|159041476|ref|YP_001540728.1| - 0.005 16.8 0.0 0.013 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|159041476|ref|YP_001540728.1| - 0.0075 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|159041476|ref|YP_001540728.1| - 0.014 14.7 0.1 0.032 13.5 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|159041476|ref|YP_001540728.1| - 0.018 15.3 0.1 0.057 13.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|159041476|ref|YP_001540728.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|159041476|ref|YP_001540728.1| - 0.028 14.4 0.1 0.5 10.3 0.0 2.4 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|159041476|ref|YP_001540728.1| - 0.03 14.6 0.6 0.36 11.1 0.2 2.3 2 0 0 2 2 2 0 AAA domain DNA_pol3_delta PF06144.13 gi|159041476|ref|YP_001540728.1| - 0.036 13.8 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_17 PF13207.6 gi|159041476|ref|YP_001540728.1| - 0.037 14.5 0.2 0.24 11.8 0.0 2.4 3 0 0 3 3 2 0 AAA domain AAA_11 PF13086.6 gi|159041476|ref|YP_001540728.1| - 0.041 13.7 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|159041476|ref|YP_001540728.1| - 0.055 14.0 0.1 0.19 12.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter DUF2075 PF09848.9 gi|159041476|ref|YP_001540728.1| - 0.057 12.6 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Histone PF00125.24 gi|159041476|ref|YP_001540728.1| - 0.064 13.6 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 PhoH PF02562.16 gi|159041476|ref|YP_001540728.1| - 0.068 12.6 0.2 0.15 11.5 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein TsaE PF02367.17 gi|159041476|ref|YP_001540728.1| - 0.07 13.1 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IPT PF01745.16 gi|159041476|ref|YP_001540728.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase RNA_helicase PF00910.22 gi|159041476|ref|YP_001540728.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_lid_2 PF17863.1 gi|159041476|ref|YP_001540728.1| - 0.15 11.9 0.0 0.5 10.2 0.0 1.8 2 0 0 2 2 1 0 AAA lid domain AAA_30 PF13604.6 gi|159041476|ref|YP_001540728.1| - 0.57 9.9 3.1 0.52 10.0 0.1 2.2 3 0 0 3 3 2 0 AAA domain GFO_IDH_MocA PF01408.22 gi|159041477|ref|YP_001540729.1| - 1e-18 68.3 0.1 1.9e-18 67.4 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|159041477|ref|YP_001540729.1| - 4.6e-05 23.7 0.2 0.00015 22.0 0.2 1.9 1 1 0 1 1 1 1 TrkA-N domain ADH_zinc_N PF00107.26 gi|159041477|ref|YP_001540729.1| - 0.003 17.6 0.1 0.0078 16.2 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase F420_oxidored PF03807.17 gi|159041477|ref|YP_001540729.1| - 0.0051 17.4 0.1 0.013 16.1 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|159041477|ref|YP_001540729.1| - 0.013 15.7 0.1 0.038 14.2 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|159041477|ref|YP_001540729.1| - 0.014 15.7 0.2 0.041 14.2 0.1 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ThiF PF00899.21 gi|159041477|ref|YP_001540729.1| - 0.02 14.2 0.5 0.057 12.8 0.4 1.7 2 0 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.15 gi|159041477|ref|YP_001540729.1| - 0.038 14.1 0.1 0.081 13.1 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ribosomal_S3_C PF00189.20 gi|159041478|ref|YP_001540730.1| - 2.1e-18 66.6 1.1 3.8e-18 65.8 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|159041478|ref|YP_001540730.1| - 2.5e-07 30.4 1.7 2.5e-07 30.4 1.7 2.1 2 1 1 3 3 3 1 KH domain KH_4 PF13083.6 gi|159041478|ref|YP_001540730.1| - 0.14 12.0 2.1 0.2 11.6 0.2 2.2 2 0 0 2 2 2 0 KH domain KH_1 PF00013.29 gi|159041478|ref|YP_001540730.1| - 5.7 6.8 7.8 3.4 7.6 2.2 3.2 3 1 1 4 4 4 0 KH domain DUF4129 PF13559.6 gi|159041479|ref|YP_001540731.1| - 0.0048 17.1 0.0 0.0082 16.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Wzy_C PF04932.15 gi|159041480|ref|YP_001540732.1| - 0.023 14.3 0.1 0.023 14.3 0.1 3.3 3 1 0 3 3 3 0 O-Antigen ligase AAA_3 PF07726.11 gi|159041481|ref|YP_001540733.1| - 2.1e-63 212.0 0.0 3.5e-63 211.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|159041481|ref|YP_001540733.1| - 5.2e-19 67.8 0.0 8.4e-19 67.2 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|159041481|ref|YP_001540733.1| - 4.8e-11 42.8 0.0 1.1e-10 41.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|159041481|ref|YP_001540733.1| - 5.5e-06 26.2 0.0 1.6e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|159041481|ref|YP_001540733.1| - 7.9e-06 26.3 0.0 1.2e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|159041481|ref|YP_001540733.1| - 0.00012 21.5 0.1 0.069 12.5 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|159041481|ref|YP_001540733.1| - 0.00031 20.5 0.0 0.0045 16.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM_lid PF17855.1 gi|159041481|ref|YP_001540733.1| - 0.013 16.0 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 MCM AAA-lid domain MCM PF00493.23 gi|159041481|ref|YP_001540733.1| - 0.014 14.5 0.0 0.047 12.8 0.0 1.7 2 0 0 2 2 2 0 MCM P-loop domain AAA_2 PF07724.14 gi|159041481|ref|YP_001540733.1| - 0.1 12.7 0.0 0.38 10.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Dicty_CAD PF05720.12 gi|159041481|ref|YP_001540733.1| - 0.12 12.4 0.1 0.46 10.5 0.1 2.1 1 1 0 1 1 1 0 Cell-cell adhesion domain DUF58 PF01882.18 gi|159041482|ref|YP_001540734.1| - 3.5e-23 81.7 0.0 5.8e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 UPF0182 PF03699.13 gi|159041483|ref|YP_001540735.1| - 0.24 9.5 11.6 0.26 9.3 11.6 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) E1-E2_ATPase PF00122.20 gi|159041483|ref|YP_001540735.1| - 2 7.9 9.4 3.7 7.0 1.8 2.3 2 0 0 2 2 2 0 E1-E2 ATPase EssA PF10661.9 gi|159041484|ref|YP_001540736.1| - 0.15 11.9 0.4 0.32 10.8 0.4 1.5 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA ADH_N PF08240.12 gi|159041485|ref|YP_001540737.1| - 2.5e-31 107.8 1.0 4.1e-31 107.1 1.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159041485|ref|YP_001540737.1| - 2.7e-29 101.8 0.5 4e-29 101.2 0.5 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|159041485|ref|YP_001540737.1| - 9.2e-15 55.9 0.0 1.6e-14 55.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|159041485|ref|YP_001540737.1| - 7.5e-06 25.4 3.3 1.1e-05 24.8 3.3 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|159041485|ref|YP_001540737.1| - 2.5e-05 23.9 0.3 4.1e-05 23.2 0.3 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Glyco_hydro_106 PF17132.4 gi|159041486|ref|YP_001540738.1| - 3.4e-16 58.7 0.0 3.9e-14 51.9 0.0 2.3 2 0 0 2 2 2 2 alpha-L-rhamnosidase HTH_10 PF04967.12 gi|159041488|ref|YP_001540740.1| - 9.3e-14 51.0 0.1 2.2e-13 49.8 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|159041488|ref|YP_001540740.1| - 0.0015 18.0 0.2 0.083 12.5 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|159041488|ref|YP_001540740.1| - 0.0019 17.9 0.1 0.0037 17.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|159041488|ref|YP_001540740.1| - 0.078 12.8 0.1 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain SBD_N PF07005.11 gi|159041489|ref|YP_001540741.1| - 5.9e-22 78.5 0.0 1e-18 68.0 0.0 2.5 2 1 1 3 3 3 2 Sugar-binding N-terminal domain NBD_C PF17042.5 gi|159041489|ref|YP_001540741.1| - 7e-09 36.4 0.3 4.3e-06 27.3 0.3 2.5 3 0 0 3 3 3 2 Nucleotide-binding C-terminal domain AAA PF00004.29 gi|159041490|ref|YP_001540742.1| - 1.3e-15 58.0 0.0 6.3e-15 55.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|159041490|ref|YP_001540742.1| - 2.1e-13 50.4 0.0 7.1e-10 38.9 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|159041490|ref|YP_001540742.1| - 3.6e-13 49.7 0.1 9.7e-13 48.3 0.1 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_16 PF13191.6 gi|159041490|ref|YP_001540742.1| - 4e-07 30.6 0.0 0.00025 21.5 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|159041490|ref|YP_001540742.1| - 7.2e-07 29.1 0.0 1.5e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|159041490|ref|YP_001540742.1| - 2e-06 27.7 0.0 4.3e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|159041490|ref|YP_001540742.1| - 2.1e-06 28.1 0.2 0.0055 17.0 0.1 2.8 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|159041490|ref|YP_001540742.1| - 1.5e-05 25.1 0.0 3.5e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|159041490|ref|YP_001540742.1| - 1.9e-05 24.9 0.0 5.2e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_24 PF13479.6 gi|159041490|ref|YP_001540742.1| - 3.7e-05 23.5 0.0 7.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|159041490|ref|YP_001540742.1| - 3.9e-05 23.3 0.1 0.00029 20.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|159041490|ref|YP_001540742.1| - 0.00018 21.4 2.6 0.23 11.2 0.1 3.1 2 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_18 PF13238.6 gi|159041490|ref|YP_001540742.1| - 0.00046 20.7 0.0 0.0017 18.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|159041490|ref|YP_001540742.1| - 0.001 18.8 0.0 0.0029 17.4 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|159041490|ref|YP_001540742.1| - 0.0013 18.8 0.1 0.014 15.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|159041490|ref|YP_001540742.1| - 0.0031 17.9 0.0 0.0085 16.5 0.0 1.8 1 1 0 1 1 1 1 RNA helicase TniB PF05621.11 gi|159041490|ref|YP_001540742.1| - 0.0057 16.1 0.0 2 7.8 0.0 3.2 3 0 0 3 3 3 1 Bacterial TniB protein AAA_33 PF13671.6 gi|159041490|ref|YP_001540742.1| - 0.0069 16.6 0.0 0.019 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|159041490|ref|YP_001540742.1| - 0.0089 15.8 0.1 0.035 13.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|159041490|ref|YP_001540742.1| - 0.017 14.5 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MeaB PF03308.16 gi|159041490|ref|YP_001540742.1| - 0.018 14.0 2.2 0.034 13.1 0.0 2.4 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DNA_pol3_delta PF06144.13 gi|159041490|ref|YP_001540742.1| - 0.019 14.8 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_11 PF13086.6 gi|159041490|ref|YP_001540742.1| - 0.021 14.6 0.1 0.11 12.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|159041490|ref|YP_001540742.1| - 0.021 14.7 0.0 0.79 9.6 0.0 2.4 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|159041490|ref|YP_001540742.1| - 0.024 14.2 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Viral_helicase1 PF01443.18 gi|159041490|ref|YP_001540742.1| - 0.036 13.8 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.6 gi|159041490|ref|YP_001540742.1| - 0.043 14.1 0.0 0.12 12.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|159041490|ref|YP_001540742.1| - 0.047 13.1 0.1 7.8 5.9 0.0 2.5 3 0 0 3 3 3 0 PhoH-like protein AAA_17 PF13207.6 gi|159041490|ref|YP_001540742.1| - 0.055 13.9 0.2 0.19 12.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain Rad17 PF03215.15 gi|159041490|ref|YP_001540742.1| - 0.061 13.2 0.0 0.24 11.3 0.0 2.1 3 1 0 3 3 1 0 Rad17 P-loop domain CbiA PF01656.23 gi|159041490|ref|YP_001540742.1| - 0.085 12.9 0.0 0.23 11.5 0.0 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Hydantoinase_B PF02538.14 gi|159041490|ref|YP_001540742.1| - 0.12 10.8 0.1 0.17 10.2 0.1 1.4 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase ResIII PF04851.15 gi|159041490|ref|YP_001540742.1| - 0.14 12.2 0.0 1.1 9.2 0.0 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|159041490|ref|YP_001540742.1| - 0.17 12.4 0.1 0.38 11.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|159041491|ref|YP_001540743.1| - 1.1e-13 51.8 0.0 3.2e-13 50.3 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|159041491|ref|YP_001540743.1| - 2.3e-12 47.2 0.1 2e-10 40.9 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|159041491|ref|YP_001540743.1| - 1.6e-07 31.2 0.0 3e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|159041491|ref|YP_001540743.1| - 4.9e-07 29.2 0.0 9e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RFC1 PF08519.12 gi|159041491|ref|YP_001540743.1| - 2.2e-05 24.7 0.0 4.3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_22 PF13401.6 gi|159041491|ref|YP_001540743.1| - 3e-05 24.3 0.4 0.00029 21.1 0.1 2.9 2 1 0 2 2 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|159041491|ref|YP_001540743.1| - 4.1e-05 23.8 0.2 0.00013 22.2 0.1 2.0 2 0 0 2 2 1 1 AAA C-terminal domain AAA_5 PF07728.14 gi|159041491|ref|YP_001540743.1| - 9.6e-05 22.4 0.0 0.00035 20.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|159041491|ref|YP_001540743.1| - 0.0001 22.8 0.0 0.0002 21.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|159041491|ref|YP_001540743.1| - 0.00017 20.8 0.0 0.00037 19.7 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein DNA_pol3_delta PF06144.13 gi|159041491|ref|YP_001540743.1| - 0.00054 19.8 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|159041491|ref|YP_001540743.1| - 0.00056 20.0 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|159041491|ref|YP_001540743.1| - 0.00057 19.6 0.5 0.0036 17.1 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|159041491|ref|YP_001540743.1| - 0.00094 18.7 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|159041491|ref|YP_001540743.1| - 0.0014 18.3 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|159041491|ref|YP_001540743.1| - 0.0026 18.3 0.0 0.0071 16.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|159041491|ref|YP_001540743.1| - 0.0026 18.0 0.0 0.005 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|159041491|ref|YP_001540743.1| - 0.0027 17.6 0.1 0.014 15.3 0.1 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_25 PF13481.6 gi|159041491|ref|YP_001540743.1| - 0.0051 16.4 0.3 0.016 14.8 0.1 2.0 2 1 0 2 2 1 1 AAA domain AAA_11 PF13086.6 gi|159041491|ref|YP_001540743.1| - 0.0068 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|159041491|ref|YP_001540743.1| - 0.0088 16.0 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 gi|159041491|ref|YP_001540743.1| - 0.0091 15.2 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|159041491|ref|YP_001540743.1| - 0.011 16.1 0.0 0.035 14.5 0.0 1.9 2 1 0 2 2 1 0 RNA helicase AAA_19 PF13245.6 gi|159041491|ref|YP_001540743.1| - 0.012 15.9 0.1 0.027 14.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|159041491|ref|YP_001540743.1| - 0.017 15.5 0.0 0.045 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|159041491|ref|YP_001540743.1| - 0.02 14.2 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|159041491|ref|YP_001540743.1| - 0.025 13.9 0.0 0.055 12.8 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_29 PF13555.6 gi|159041491|ref|YP_001540743.1| - 0.029 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|159041491|ref|YP_001540743.1| - 0.032 14.2 0.0 0.079 12.9 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.6 gi|159041491|ref|YP_001540743.1| - 0.036 14.2 0.0 0.092 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|159041491|ref|YP_001540743.1| - 0.04 13.8 0.0 0.25 11.3 0.0 2.3 3 0 0 3 3 2 0 NACHT domain Zeta_toxin PF06414.12 gi|159041491|ref|YP_001540743.1| - 0.045 13.0 0.0 0.093 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_6 PF12774.7 gi|159041491|ref|YP_001540743.1| - 0.06 12.3 0.0 0.13 11.2 0.0 1.5 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_2 PF07724.14 gi|159041491|ref|YP_001540743.1| - 0.063 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Parvo_NS1 PF01057.17 gi|159041491|ref|YP_001540743.1| - 0.066 12.3 0.0 0.21 10.6 0.0 1.7 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 ResIII PF04851.15 gi|159041491|ref|YP_001540743.1| - 0.075 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|159041491|ref|YP_001540743.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|159041491|ref|YP_001540743.1| - 0.16 11.7 0.0 0.38 10.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Ubie_methyltran PF01209.18 gi|159041492|ref|YP_001540744.1| - 1.2e-15 57.5 0.0 1.4e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|159041492|ref|YP_001540744.1| - 5.5e-15 55.8 0.0 7.5e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041492|ref|YP_001540744.1| - 1.1e-11 45.3 0.0 1.5e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041492|ref|YP_001540744.1| - 5.5e-08 32.7 0.0 8.2e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159041492|ref|YP_001540744.1| - 2.7e-07 30.6 0.0 3.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159041492|ref|YP_001540744.1| - 0.00035 21.3 0.0 0.00061 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|159041492|ref|YP_001540744.1| - 0.0069 15.5 0.0 0.0097 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|159041492|ref|YP_001540744.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|159041492|ref|YP_001540744.1| - 0.19 11.3 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Cdc6_C PF09079.11 gi|159041494|ref|YP_001540746.1| - 8.9e-18 64.1 0.1 3.4e-17 62.2 0.0 2.1 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|159041494|ref|YP_001540746.1| - 4e-09 36.9 0.0 1.3e-08 35.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041494|ref|YP_001540746.1| - 0.00032 21.1 0.1 0.0055 17.1 0.1 2.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|159041494|ref|YP_001540746.1| - 0.00084 19.3 0.2 0.0023 17.9 0.2 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|159041494|ref|YP_001540746.1| - 0.0064 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit NB-ARC PF00931.22 gi|159041494|ref|YP_001540746.1| - 0.042 13.0 0.0 0.11 11.6 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain ATPase PF06745.13 gi|159041494|ref|YP_001540746.1| - 0.043 13.2 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.26 gi|159041494|ref|YP_001540746.1| - 0.14 11.8 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain HTH_5 PF01022.20 gi|159041495|ref|YP_001540747.1| - 6.6e-06 25.9 0.4 1.6e-05 24.7 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|159041495|ref|YP_001540747.1| - 3.5e-05 23.3 1.2 9.4e-05 21.9 1.5 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|159041495|ref|YP_001540747.1| - 0.00033 20.5 0.3 0.00071 19.5 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|159041495|ref|YP_001540747.1| - 0.0047 17.0 0.0 0.013 15.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|159041495|ref|YP_001540747.1| - 0.041 13.8 0.1 0.061 13.2 0.1 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB UPF0175 PF03683.13 gi|159041495|ref|YP_001540747.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) AA_permease_2 PF13520.6 gi|159041496|ref|YP_001540748.1| - 1.7e-17 63.4 52.7 1.7e-17 63.4 52.7 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|159041496|ref|YP_001540748.1| - 3e-15 55.8 39.6 3e-15 55.8 39.6 2.6 1 1 1 3 3 3 1 Amino acid permease GCD14 PF08704.10 gi|159041497|ref|YP_001540749.1| - 2.2e-30 106.1 0.0 3.8e-30 105.4 0.0 1.3 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|159041497|ref|YP_001540749.1| - 1.2e-12 48.0 0.1 2e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|159041497|ref|YP_001540749.1| - 1e-08 35.1 0.0 1.8e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041497|ref|YP_001540749.1| - 1.1e-07 32.5 0.0 5.7e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|159041497|ref|YP_001540749.1| - 6.4e-07 28.7 0.0 1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.12 gi|159041497|ref|YP_001540749.1| - 4e-06 27.4 0.0 8.3e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|159041497|ref|YP_001540749.1| - 7.7e-06 25.2 0.0 1.4e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|159041497|ref|YP_001540749.1| - 0.00036 20.0 0.0 0.0005 19.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|159041497|ref|YP_001540749.1| - 0.00049 19.8 0.0 0.0015 18.2 0.0 1.7 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_15 PF09445.10 gi|159041497|ref|YP_001540749.1| - 0.0056 16.3 0.0 0.014 15.0 0.0 1.5 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|159041497|ref|YP_001540749.1| - 0.067 14.2 0.0 0.11 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|159041497|ref|YP_001540749.1| - 0.071 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.20 gi|159041497|ref|YP_001540749.1| - 0.12 11.7 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|159041497|ref|YP_001540749.1| - 0.21 11.4 0.0 0.39 10.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PcrB PF01884.17 gi|159041498|ref|YP_001540750.1| - 6.8e-58 195.8 0.8 8.5e-58 195.5 0.8 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|159041498|ref|YP_001540750.1| - 1.3e-05 24.7 0.1 3.7e-05 23.3 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|159041498|ref|YP_001540750.1| - 0.0073 15.5 0.3 0.41 9.8 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|159041498|ref|YP_001540750.1| - 0.01 14.9 0.3 0.35 9.8 0.1 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|159041498|ref|YP_001540750.1| - 0.024 13.9 0.2 0.039 13.2 0.2 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Trp_syntA PF00290.20 gi|159041498|ref|YP_001540750.1| - 0.048 12.5 1.5 0.23 10.3 0.3 2.2 2 1 0 2 2 2 0 Tryptophan synthase alpha chain PS_pyruv_trans PF04230.13 gi|159041498|ref|YP_001540750.1| - 0.096 12.6 0.1 0.84 9.5 0.0 2.0 2 0 0 2 2 2 0 Polysaccharide pyruvyl transferase Ribul_P_3_epim PF00834.19 gi|159041498|ref|YP_001540750.1| - 0.11 11.9 0.1 0.25 10.7 0.1 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Elf1 PF05129.13 gi|159041499|ref|YP_001540751.1| - 1e-17 63.9 0.5 1e-17 63.9 0.5 1.5 2 0 0 2 2 2 1 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|159041499|ref|YP_001540751.1| - 0.013 15.3 2.2 0.013 15.3 2.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|159041499|ref|YP_001540751.1| - 0.015 14.8 1.3 0.033 13.7 1.3 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-CHCC PF10276.9 gi|159041499|ref|YP_001540751.1| - 0.081 13.0 1.4 8.3 6.6 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger domain zf-RRN7 PF11781.8 gi|159041499|ref|YP_001540751.1| - 0.094 12.4 1.0 10 5.9 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 FdhE PF04216.12 gi|159041499|ref|YP_001540751.1| - 0.11 12.3 0.3 0.15 11.9 0.3 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Cys_rich_CPXG PF14255.6 gi|159041499|ref|YP_001540751.1| - 0.18 11.7 1.7 0.19 11.7 0.4 1.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_7 PF02591.15 gi|159041499|ref|YP_001540751.1| - 0.2 11.9 2.5 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|159041499|ref|YP_001540751.1| - 0.23 11.5 1.0 0.78 9.8 1.1 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-Di19 PF05605.12 gi|159041499|ref|YP_001540751.1| - 0.24 11.7 2.3 1.6 9.1 2.3 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.6 gi|159041499|ref|YP_001540751.1| - 0.46 10.4 3.4 1.6 8.7 3.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M1 PF01433.20 gi|159041500|ref|YP_001540752.1| - 9.1e-51 172.5 0.2 1.3e-50 172.0 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|159041500|ref|YP_001540752.1| - 5.3e-34 116.5 8.5 1.7e-14 54.0 0.2 4.3 1 1 3 4 4 4 4 HEAT repeats Peptidase_M1_N PF17900.1 gi|159041500|ref|YP_001540752.1| - 1e-16 61.7 0.0 1.9e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|159041500|ref|YP_001540752.1| - 1.1e-08 35.0 18.2 0.21 12.4 0.8 6.6 6 0 0 6 6 6 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|159041500|ref|YP_001540752.1| - 8.5e-06 25.6 7.0 21 5.7 0.0 7.2 7 0 0 7 7 7 0 HEAT repeat Vitellogenin_N PF01347.22 gi|159041500|ref|YP_001540752.1| - 1.1e-05 24.1 0.0 0.099 11.0 0.0 2.3 1 1 1 2 2 2 2 Lipoprotein amino terminal region DUF3458 PF11940.8 gi|159041500|ref|YP_001540752.1| - 0.0082 16.6 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Ig-like fold RICTOR_V PF14668.6 gi|159041500|ref|YP_001540752.1| - 0.026 14.7 0.0 3.5 7.9 0.0 2.5 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, domain 5 HEAT_EZ PF13513.6 gi|159041500|ref|YP_001540752.1| - 0.39 11.3 10.3 4.5 7.9 0.0 4.8 4 1 1 5 5 5 0 HEAT-like repeat HalX PF08663.10 gi|159041500|ref|YP_001540752.1| - 4.1 7.8 8.6 0.29 11.5 3.2 2.0 2 0 0 2 2 2 0 HalX domain Lyase_1 PF00206.20 gi|159041501|ref|YP_001540753.1| - 2.5e-90 303.0 0.0 3.1e-90 302.8 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|159041501|ref|YP_001540753.1| - 8.7e-13 48.5 0.1 2e-12 47.3 0.1 1.7 1 0 0 1 1 1 1 Fumarase C C-terminus Cas_GSU0054 PF09609.10 gi|159041501|ref|YP_001540753.1| - 0.2 10.3 0.0 0.3 9.8 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) UPF0147 PF03685.13 gi|159041502|ref|YP_001540754.1| - 5.9e-30 103.2 0.4 6.8e-30 103.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) QRPTase_C PF01729.19 gi|159041503|ref|YP_001540755.1| - 1.3e-16 60.8 0.0 1.8e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|159041503|ref|YP_001540755.1| - 1.1e-08 35.0 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|159041503|ref|YP_001540755.1| - 0.0001 22.7 0.0 0.0015 19.0 0.0 2.2 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase PF04095.16 gi|159041503|ref|YP_001540755.1| - 0.035 13.7 0.0 0.091 12.4 0.0 1.5 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) family DHDPS PF00701.22 gi|159041505|ref|YP_001540757.1| - 5.8e-47 159.8 0.0 6.4e-47 159.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AAA_25 PF13481.6 gi|159041505|ref|YP_001540757.1| - 0.099 12.2 0.1 0.43 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Cellulase PF00150.18 gi|159041506|ref|YP_001540758.1| - 5.6e-08 32.6 0.0 9.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.15 gi|159041506|ref|YP_001540758.1| - 0.00015 21.2 0.0 0.029 13.7 0.0 2.2 2 0 0 2 2 2 2 Beta-galactosidase DUF4434 PF14488.6 gi|159041506|ref|YP_001540758.1| - 0.00064 19.8 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) Glyco_hydro_35 PF01301.19 gi|159041506|ref|YP_001540758.1| - 0.0022 17.7 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42M PF08532.10 gi|159041506|ref|YP_001540758.1| - 0.021 14.3 0.0 0.4 10.1 0.0 2.3 1 1 0 1 1 1 0 Beta-galactosidase trimerisation domain Glyco_hydro_2_C PF02836.17 gi|159041506|ref|YP_001540758.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain Rhomboid PF01694.22 gi|159041507|ref|YP_001540759.1| - 6.5e-22 78.1 15.1 6.5e-22 78.1 15.1 1.7 1 1 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|159041507|ref|YP_001540759.1| - 1.4e-06 28.7 0.1 1.4e-06 28.7 0.1 2.2 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) GTP_EFTU PF00009.27 gi|159041508|ref|YP_001540760.1| - 1.6e-58 197.4 0.0 2.4e-58 196.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|159041508|ref|YP_001540760.1| - 4e-28 97.6 0.0 1.5e-27 95.8 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|159041508|ref|YP_001540760.1| - 6.2e-23 80.7 0.0 1.5e-22 79.5 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|159041508|ref|YP_001540760.1| - 3e-20 72.0 0.0 1e-19 70.3 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|159041508|ref|YP_001540760.1| - 6.8e-16 58.4 0.9 6.8e-16 58.4 0.9 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|159041508|ref|YP_001540760.1| - 0.0026 17.8 0.0 0.0053 16.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|159041508|ref|YP_001540760.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain TauE PF01925.19 gi|159041510|ref|YP_001540762.1| - 2e-41 142.2 31.5 2e-41 142.2 31.5 2.4 2 1 0 2 2 2 2 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|159041510|ref|YP_001540762.1| - 2.8e-21 75.5 15.8 2.8e-21 75.5 15.8 3.1 3 1 0 3 3 3 1 Protein of unknown function (DUF1634) TauE PF01925.19 gi|159041511|ref|YP_001540763.1| - 1.3e-32 113.3 35.6 1.7e-32 112.9 35.6 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|159041512|ref|YP_001540764.1| - 3.4e-10 39.9 8.0 4.3e-10 39.6 8.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Ninjurin PF04923.12 gi|159041512|ref|YP_001540764.1| - 0.14 12.2 0.2 0.14 12.2 0.2 2.2 2 1 0 2 2 2 0 Ninjurin TauE PF01925.19 gi|159041513|ref|YP_001540765.1| - 2.7e-42 145.0 28.8 2.7e-42 145.0 28.8 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|159041514|ref|YP_001540766.1| - 5.8e-28 97.0 13.9 6.8e-28 96.7 13.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) PALP PF00291.25 gi|159041515|ref|YP_001540767.1| - 1.4e-86 290.6 2.1 1.6e-86 290.3 2.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|159041515|ref|YP_001540767.1| - 2.3e-07 30.4 0.0 8.9e-07 28.6 0.0 1.9 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|159041515|ref|YP_001540767.1| - 0.0043 17.0 0.0 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 ACT domain UPF0227 PF05728.12 gi|159041515|ref|YP_001540767.1| - 0.07 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) LAL_C2 PF18603.1 gi|159041515|ref|YP_001540767.1| - 0.11 12.7 0.7 42 4.4 0.1 3.5 4 0 0 4 4 4 0 L-amino acid ligase C-terminal domain 2 ACT_5 PF13710.6 gi|159041515|ref|YP_001540767.1| - 0.14 12.0 0.2 0.8 9.6 0.2 2.2 1 1 1 2 2 2 0 ACT domain Ribosomal_L29 PF00831.23 gi|159041516|ref|YP_001540768.1| - 4.3e-15 55.4 1.3 4.3e-15 55.4 1.3 1.9 2 1 0 2 2 2 1 Ribosomal L29 protein HTH_38 PF13936.6 gi|159041516|ref|YP_001540768.1| - 0.00045 19.9 0.9 0.0015 18.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|159041516|ref|YP_001540768.1| - 0.0089 15.8 0.1 0.04 13.7 0.0 2.0 1 1 1 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 gi|159041516|ref|YP_001540768.1| - 0.011 15.7 0.1 0.025 14.6 0.1 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|159041516|ref|YP_001540768.1| - 0.016 15.5 0.4 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|159041516|ref|YP_001540768.1| - 0.019 15.1 0.2 0.034 14.3 0.2 1.4 1 0 0 1 1 1 0 Trp repressor protein TnsD PF15978.5 gi|159041516|ref|YP_001540768.1| - 0.021 13.8 0.1 0.028 13.4 0.1 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_49 PF18010.1 gi|159041516|ref|YP_001540768.1| - 0.027 14.3 0.2 0.046 13.6 0.2 1.4 1 0 0 1 1 1 0 Cry35Ab1 HTH C-terminal domain HTH_3 PF01381.22 gi|159041516|ref|YP_001540768.1| - 0.033 14.2 0.6 0.21 11.6 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix DnaB_bind PF10410.9 gi|159041516|ref|YP_001540768.1| - 0.081 13.1 1.9 2.3 8.4 0.3 2.3 1 1 1 2 2 2 0 DnaB-helicase binding domain of primase DUF2299 PF10061.9 gi|159041516|ref|YP_001540768.1| - 0.15 11.8 0.9 0.2 11.4 0.8 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) HTH_23 PF13384.6 gi|159041516|ref|YP_001540768.1| - 0.18 11.7 0.0 0.18 11.7 0.0 2.0 3 0 0 3 3 3 0 Homeodomain-like domain GFO_IDH_MocA PF01408.22 gi|159041517|ref|YP_001540769.1| - 6.3e-17 62.5 0.0 1.5e-16 61.3 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041517|ref|YP_001540769.1| - 0.0083 16.1 0.2 0.013 15.5 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.20 gi|159041517|ref|YP_001540769.1| - 0.12 12.5 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AP_endonuc_2 PF01261.24 gi|159041518|ref|YP_001540770.1| - 1.1e-20 74.0 0.0 1.5e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel H_PPase PF03030.16 gi|159041519|ref|YP_001540771.1| - 4.8e-236 785.4 33.3 5.5e-236 785.2 33.3 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Peptidase_M42 PF05343.14 gi|159041520|ref|YP_001540772.1| - 1.5e-104 349.2 0.1 1.7e-104 348.9 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|159041520|ref|YP_001540772.1| - 8.2e-07 28.9 0.0 1.7e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|159041520|ref|YP_001540772.1| - 1.5e-06 28.1 0.0 0.00017 21.3 0.0 2.5 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M19 PF01244.21 gi|159041521|ref|YP_001540773.1| - 1e-88 297.6 0.0 1.2e-88 297.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|159041521|ref|YP_001540773.1| - 7.6e-05 22.6 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase Spt5-NGN PF03439.13 gi|159041522|ref|YP_001540774.1| - 8.7e-18 64.0 0.2 2.1e-17 62.8 0.1 1.7 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|159041522|ref|YP_001540774.1| - 5.9e-05 22.9 0.8 0.00027 20.8 0.4 2.1 2 0 0 2 2 2 1 KOW motif RIO1 PF01163.22 gi|159041523|ref|YP_001540775.1| - 6.6e-06 25.8 0.1 9.9e-06 25.3 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|159041523|ref|YP_001540775.1| - 0.0006 19.3 0.0 0.00096 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain FTA2 PF13095.6 gi|159041523|ref|YP_001540775.1| - 0.066 12.8 0.0 1.2 8.7 0.0 2.1 1 1 1 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 APH PF01636.23 gi|159041523|ref|YP_001540775.1| - 0.078 12.9 0.0 0.79 9.6 0.0 1.9 1 1 1 2 2 2 0 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|159041523|ref|YP_001540775.1| - 0.1 11.9 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase CT47 PF15623.6 gi|159041523|ref|YP_001540775.1| - 0.15 11.8 0.2 0.21 11.4 0.2 1.1 1 0 0 1 1 1 0 Cancer/testis gene family 47 THUMP PF02926.17 gi|159041524|ref|YP_001540776.1| - 9.9e-09 35.4 0.4 2.6e-08 34.1 0.4 1.7 1 1 0 1 1 1 1 THUMP domain Cons_hypoth95 PF03602.15 gi|159041525|ref|YP_001540777.1| - 1.1e-06 28.5 0.0 1.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|159041525|ref|YP_001540777.1| - 2.1e-06 27.4 0.0 2.9e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 gi|159041525|ref|YP_001540777.1| - 2.7e-06 26.9 0.0 3.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_25 PF13649.6 gi|159041525|ref|YP_001540777.1| - 3.6e-05 24.4 0.0 6.9e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|159041525|ref|YP_001540777.1| - 0.00027 21.5 0.0 0.00072 20.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041525|ref|YP_001540777.1| - 0.002 17.9 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|159041525|ref|YP_001540777.1| - 0.013 16.5 0.0 0.028 15.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_30 PF05430.11 gi|159041525|ref|YP_001540777.1| - 0.022 14.6 0.0 0.061 13.2 0.0 1.7 1 1 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|159041525|ref|YP_001540777.1| - 0.039 13.4 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|159041525|ref|YP_001540777.1| - 0.074 12.9 0.0 0.24 11.2 0.0 1.9 1 1 1 2 2 2 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|159041525|ref|YP_001540777.1| - 0.18 11.5 0.1 0.64 9.7 0.0 1.9 3 0 0 3 3 3 0 DNA methylase MT PF12777.7 gi|159041527|ref|YP_001540779.1| - 0.019 14.0 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor UbiA PF01040.18 gi|159041528|ref|YP_001540780.1| - 1.5e-26 93.3 18.9 1.5e-26 93.3 18.9 1.5 1 1 1 2 2 2 1 UbiA prenyltransferase family DUF1641 PF07849.11 gi|159041529|ref|YP_001540781.1| - 6.8e-14 51.5 0.1 1.2e-13 50.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) AIRS_C PF02769.22 gi|159041530|ref|YP_001540782.1| - 9e-19 68.1 0.2 1.4e-18 67.5 0.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|159041530|ref|YP_001540782.1| - 3.7e-17 62.8 0.2 7.3e-17 61.8 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AAA_31 PF13614.6 gi|159041531|ref|YP_001540783.1| - 1.2e-12 48.1 0.0 2e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|159041531|ref|YP_001540783.1| - 4.2e-10 39.8 0.0 6.5e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|159041531|ref|YP_001540783.1| - 1.2e-05 24.9 0.0 0.00069 19.1 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|159041531|ref|YP_001540783.1| - 2.6e-05 23.5 0.1 0.00083 18.6 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase XPG_N PF00752.17 gi|159041531|ref|YP_001540783.1| - 0.021 15.3 0.0 0.044 14.2 0.0 1.5 1 0 0 1 1 1 0 XPG N-terminal domain AAA_25 PF13481.6 gi|159041531|ref|YP_001540783.1| - 0.12 11.9 0.0 0.28 10.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AXE1 PF05448.12 gi|159041531|ref|YP_001540783.1| - 0.14 10.8 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) AAA_19 PF13245.6 gi|159041531|ref|YP_001540783.1| - 0.16 12.3 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain CBP_BcsQ PF06564.12 gi|159041531|ref|YP_001540783.1| - 0.17 11.3 0.0 0.29 10.6 0.0 1.6 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ DUF87 PF01935.17 gi|159041531|ref|YP_001540783.1| - 0.21 11.7 0.9 0.61 10.1 0.2 2.1 2 0 0 2 2 2 0 Helicase HerA, central domain Lon_C PF05362.13 gi|159041533|ref|YP_001540785.1| - 4.2e-11 42.8 0.1 7.2e-11 42.0 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|159041533|ref|YP_001540785.1| - 0.0062 16.4 0.1 0.072 13.0 0.0 2.3 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase DUF3829 PF12889.7 gi|159041533|ref|YP_001540785.1| - 0.19 11.2 6.6 1.4 8.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3829) DASH_Duo1 PF08651.10 gi|159041533|ref|YP_001540785.1| - 0.67 9.8 3.6 0.75 9.6 0.8 2.2 2 0 0 2 2 2 0 DASH complex subunit Duo1 AA_permease PF00324.21 gi|159041534|ref|YP_001540786.1| - 1.7e-16 59.9 50.0 2.8e-16 59.2 50.0 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|159041534|ref|YP_001540786.1| - 9.2e-13 47.8 54.9 1.5e-12 47.1 54.8 1.4 1 1 0 1 1 1 1 Amino acid permease AhpC-TSA_2 PF13911.6 gi|159041535|ref|YP_001540787.1| - 0.041 14.0 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme GHMP_kinases_N PF00288.26 gi|159041536|ref|YP_001540788.1| - 4.5e-14 52.4 2.0 4.5e-14 52.4 2.0 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|159041536|ref|YP_001540788.1| - 8.9e-13 48.4 1.3 8.9e-13 48.4 1.3 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|159041536|ref|YP_001540788.1| - 6e-05 22.5 0.1 0.00018 21.0 0.1 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature CarboxypepD_reg PF13620.6 gi|159041537|ref|YP_001540789.1| - 0.00018 21.7 14.4 0.0004 20.6 0.8 4.8 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Ribosomal_L16 PF00252.18 gi|159041538|ref|YP_001540790.1| - 1.9e-29 102.3 0.5 2.3e-29 102.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Glyco_hydro_127 PF07944.12 gi|159041539|ref|YP_001540791.1| - 7.4e-154 513.1 0.0 8.5e-154 512.9 0.0 1.0 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 Lactamase_B PF00753.27 gi|159041540|ref|YP_001540792.1| - 7.8e-11 42.3 1.0 9.8e-11 42.0 1.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|159041540|ref|YP_001540792.1| - 0.0015 18.1 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Toxin_6 PF05453.12 gi|159041540|ref|YP_001540792.1| - 0.071 13.6 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 BmTXKS1/BmP02 toxin family Epimerase PF01370.21 gi|159041542|ref|YP_001540794.1| - 3.6e-07 29.9 0.0 4.8e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|159041542|ref|YP_001540794.1| - 0.00053 19.6 0.0 0.00097 18.8 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|159041542|ref|YP_001540794.1| - 0.0011 18.9 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding AAA PF00004.29 gi|159041543|ref|YP_001540795.1| - 2.7e-99 328.7 0.0 1.3e-49 168.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|159041543|ref|YP_001540795.1| - 4.3e-32 110.1 0.1 3.7e-31 107.2 0.6 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|159041543|ref|YP_001540795.1| - 1.1e-25 89.2 0.2 1e-13 50.8 0.0 3.2 2 0 0 2 2 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|159041543|ref|YP_001540795.1| - 1.1e-15 57.7 0.0 3.4e-07 30.1 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|159041543|ref|YP_001540795.1| - 9.7e-13 48.8 0.2 5.3e-06 26.9 0.0 3.6 3 1 1 4 4 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|159041543|ref|YP_001540795.1| - 3.3e-12 46.8 0.0 1.1e-05 25.6 0.0 3.2 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|159041543|ref|YP_001540795.1| - 6.2e-12 46.0 0.1 0.00053 20.3 0.0 4.1 3 1 0 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|159041543|ref|YP_001540795.1| - 1.3e-11 44.9 0.0 6.9e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|159041543|ref|YP_001540795.1| - 6e-11 42.5 2.3 0.00021 21.3 0.4 4.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|159041543|ref|YP_001540795.1| - 3.4e-10 39.7 0.0 0.00047 19.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|159041543|ref|YP_001540795.1| - 2e-09 37.6 0.0 0.00078 19.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|159041543|ref|YP_001540795.1| - 1.8e-08 34.3 0.0 0.0056 16.4 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|159041543|ref|YP_001540795.1| - 6.9e-08 32.9 0.0 0.0083 16.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|159041543|ref|YP_001540795.1| - 1.2e-07 32.4 0.0 0.026 15.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|159041543|ref|YP_001540795.1| - 6.9e-07 28.9 0.6 0.038 13.4 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Vps4_C PF09336.10 gi|159041543|ref|YP_001540795.1| - 1.4e-06 28.2 2.7 0.025 14.6 0.1 4.0 3 0 0 3 3 3 2 Vps4 C terminal oligomerisation domain Sigma54_activat PF00158.26 gi|159041543|ref|YP_001540795.1| - 4.4e-06 26.5 0.1 0.11 12.2 0.0 3.2 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|159041543|ref|YP_001540795.1| - 5.3e-06 26.1 0.0 0.067 12.7 0.0 2.7 3 0 0 3 3 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|159041543|ref|YP_001540795.1| - 1.6e-05 25.2 0.0 0.28 11.6 0.0 2.9 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.16 gi|159041543|ref|YP_001540795.1| - 1.9e-05 24.2 0.2 0.17 11.3 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.6 gi|159041543|ref|YP_001540795.1| - 2.2e-05 24.3 0.5 0.23 11.1 0.0 3.0 3 0 0 3 3 2 2 AAA domain ABC_tran PF00005.27 gi|159041543|ref|YP_001540795.1| - 2.3e-05 24.9 0.0 0.32 11.5 0.0 3.0 3 0 0 3 3 2 2 ABC transporter Zeta_toxin PF06414.12 gi|159041543|ref|YP_001540795.1| - 4e-05 23.0 0.1 0.26 10.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin DUF815 PF05673.13 gi|159041543|ref|YP_001540795.1| - 4.4e-05 22.8 0.0 0.27 10.3 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) TsaE PF02367.17 gi|159041543|ref|YP_001540795.1| - 5.7e-05 23.1 0.0 0.45 10.5 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDC48_2 PF02933.17 gi|159041543|ref|YP_001540795.1| - 6.6e-05 22.6 0.0 0.0003 20.5 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_3 PF07726.11 gi|159041543|ref|YP_001540795.1| - 0.00042 20.2 0.0 1 9.2 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|159041543|ref|YP_001540795.1| - 0.00055 19.1 0.0 0.95 8.5 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|159041543|ref|YP_001540795.1| - 0.00074 19.3 1.3 0.58 9.8 0.0 3.3 4 0 0 4 4 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|159041543|ref|YP_001540795.1| - 0.00084 19.5 0.0 0.97 9.5 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase PF06745.13 gi|159041543|ref|YP_001540795.1| - 0.0011 18.4 5.9 0.63 9.3 0.1 3.9 3 1 0 4 4 4 2 KaiC NACHT PF05729.12 gi|159041543|ref|YP_001540795.1| - 0.0011 18.9 0.5 1.2 9.0 0.0 3.1 3 0 0 3 3 3 1 NACHT domain AAA_25 PF13481.6 gi|159041543|ref|YP_001540795.1| - 0.0011 18.6 4.1 2.9 7.4 0.0 3.7 2 1 1 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|159041543|ref|YP_001540795.1| - 0.0013 19.0 1.9 1.2 9.5 0.2 3.2 2 1 1 3 3 2 1 AAA domain Bac_DnaA PF00308.18 gi|159041543|ref|YP_001540795.1| - 0.0017 18.2 0.0 3.3 7.5 0.0 3.3 3 1 0 3 3 3 0 Bacterial dnaA protein DUF2075 PF09848.9 gi|159041543|ref|YP_001540795.1| - 0.0018 17.6 0.3 0.95 8.6 0.0 2.8 3 0 0 3 3 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|159041543|ref|YP_001540795.1| - 0.0028 17.4 0.0 0.088 12.5 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PduV-EutP PF10662.9 gi|159041543|ref|YP_001540795.1| - 0.0037 17.0 0.0 1.9 8.2 0.0 2.7 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|159041543|ref|YP_001540795.1| - 0.0038 16.4 0.1 3.4 6.8 0.0 2.8 3 0 0 3 3 2 0 NB-ARC domain Guanylate_kin PF00625.21 gi|159041543|ref|YP_001540795.1| - 0.0043 16.7 1.5 21 4.8 0.0 4.7 3 2 2 5 5 5 0 Guanylate kinase AAA_11 PF13086.6 gi|159041543|ref|YP_001540795.1| - 0.0044 16.9 0.4 2.9 7.6 0.0 2.6 3 0 0 3 3 2 1 AAA domain MazE_antitoxin PF04014.18 gi|159041543|ref|YP_001540795.1| - 0.0062 16.4 1.7 0.02 14.8 0.2 2.7 3 0 0 3 3 2 1 Antidote-toxin recognition MazE, bacterial antitoxin ATPase_2 PF01637.18 gi|159041543|ref|YP_001540795.1| - 0.008 16.1 0.1 11 5.9 0.0 3.4 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|159041543|ref|YP_001540795.1| - 0.011 15.7 1.7 8.2 6.3 0.0 3.8 3 1 1 4 4 4 0 NTPase AAA_17 PF13207.6 gi|159041543|ref|YP_001540795.1| - 0.011 16.2 0.0 8 6.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.6 gi|159041543|ref|YP_001540795.1| - 0.027 14.6 0.0 4.9 7.2 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Ribosomal_L22 PF00237.19 gi|159041543|ref|YP_001540795.1| - 0.04 14.2 0.3 0.093 13.0 0.3 1.6 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e AAA_29 PF13555.6 gi|159041543|ref|YP_001540795.1| - 0.04 13.6 0.0 8.5 6.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|159041543|ref|YP_001540795.1| - 0.045 13.7 0.0 8.7 6.2 0.0 2.9 2 1 1 3 3 3 0 Rad17 P-loop domain AFG1_ATPase PF03969.16 gi|159041543|ref|YP_001540795.1| - 0.055 12.4 0.0 13 4.5 0.0 2.9 2 0 0 2 2 2 0 AFG1-like ATPase IPT PF01745.16 gi|159041543|ref|YP_001540795.1| - 0.087 12.2 0.2 2.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase TniB PF05621.11 gi|159041543|ref|YP_001540795.1| - 0.098 12.0 0.0 9.2 5.6 0.0 2.8 3 0 0 3 3 2 0 Bacterial TniB protein Cytidylate_kin PF02224.18 gi|159041543|ref|YP_001540795.1| - 0.12 12.1 0.9 9.9 5.8 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase RPN6_N PF18055.1 gi|159041543|ref|YP_001540795.1| - 0.13 12.7 2.5 0.31 11.4 0.9 2.4 3 0 0 3 3 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain DUF1967 PF09269.11 gi|159041543|ref|YP_001540795.1| - 0.19 11.7 0.8 30 4.6 0.0 3.4 3 0 0 3 3 2 0 Domain of unknown function (DUF1967) P5CR_dimer PF14748.6 gi|159041544|ref|YP_001540796.1| - 1.1e-26 93.0 0.0 2.4e-26 91.9 0.0 1.6 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|159041544|ref|YP_001540796.1| - 8.5e-18 64.7 1.0 1.6e-17 63.9 1.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.9 gi|159041544|ref|YP_001540796.1| - 2.2e-05 24.3 2.0 4.8e-05 23.2 1.9 1.6 1 1 1 2 2 2 1 Rossmann-like domain NAD_binding_2 PF03446.15 gi|159041544|ref|YP_001540796.1| - 7.1e-05 23.0 0.3 0.00014 22.1 0.3 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|159041544|ref|YP_001540796.1| - 8.6e-05 22.2 0.6 0.00015 21.5 0.6 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|159041544|ref|YP_001540796.1| - 0.00021 21.3 4.8 0.0026 17.8 4.2 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|159041544|ref|YP_001540796.1| - 0.011 15.1 0.1 0.019 14.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|159041544|ref|YP_001540796.1| - 0.017 14.5 0.4 0.14 11.5 0.1 2.0 2 0 0 2 2 2 0 ThiF family PDH PF02153.17 gi|159041544|ref|YP_001540796.1| - 0.021 13.8 0.2 0.029 13.4 0.2 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase IlvN PF07991.12 gi|159041544|ref|YP_001540796.1| - 0.082 12.5 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Methyltransf_25 PF13649.6 gi|159041545|ref|YP_001540797.1| - 1.7e-08 35.0 0.0 2.8e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|159041545|ref|YP_001540797.1| - 3.3e-08 33.2 0.0 5.2e-08 32.5 0.0 1.4 2 0 0 2 2 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|159041545|ref|YP_001540797.1| - 5.1e-08 32.9 0.0 6.1e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|159041545|ref|YP_001540797.1| - 6.4e-06 25.7 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|159041545|ref|YP_001540797.1| - 7.3e-06 26.5 0.0 1.2e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain HTH_24 PF13412.6 gi|159041545|ref|YP_001540797.1| - 5.1e-05 22.7 2.0 7.7e-05 22.2 0.3 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Methyltransf_18 PF12847.7 gi|159041545|ref|YP_001540797.1| - 5.3e-05 23.2 0.0 8.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HTH_47 PF16221.5 gi|159041545|ref|YP_001540797.1| - 8.6e-05 22.0 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 winged helix-turn-helix PCMT PF01135.19 gi|159041545|ref|YP_001540797.1| - 0.00012 22.0 0.2 0.00024 20.9 0.0 1.6 2 0 0 2 2 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DOT1 PF08123.13 gi|159041545|ref|YP_001540797.1| - 0.00027 20.5 0.0 0.00094 18.8 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_2 PF00891.18 gi|159041545|ref|YP_001540797.1| - 0.00045 19.6 0.0 0.00067 19.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain RrnaAD PF00398.20 gi|159041545|ref|YP_001540797.1| - 0.0011 18.1 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|159041545|ref|YP_001540797.1| - 0.0014 18.0 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TrmB PF01978.19 gi|159041545|ref|YP_001540797.1| - 0.0041 17.0 0.6 0.0077 16.1 0.6 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Methyltransf_12 PF08242.12 gi|159041545|ref|YP_001540797.1| - 0.0042 17.8 0.0 0.0067 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HTH_AsnC-type PF13404.6 gi|159041545|ref|YP_001540797.1| - 0.007 16.2 1.1 0.011 15.6 0.1 1.8 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain Mor PF08765.11 gi|159041545|ref|YP_001540797.1| - 0.0073 16.3 0.1 0.021 14.8 0.0 1.7 2 0 0 2 2 1 1 Mor transcription activator family Met_10 PF02475.16 gi|159041545|ref|YP_001540797.1| - 0.0084 15.9 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MarR_2 PF12802.7 gi|159041545|ref|YP_001540797.1| - 0.011 15.6 0.2 0.035 14.0 0.1 1.8 2 0 0 2 2 2 0 MarR family MTS PF05175.14 gi|159041545|ref|YP_001540797.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|159041545|ref|YP_001540797.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Rrf2 PF02082.20 gi|159041545|ref|YP_001540797.1| - 0.013 15.9 0.3 0.03 14.7 0.1 1.7 2 0 0 2 2 1 0 Transcriptional regulator Methyltransf_32 PF13679.6 gi|159041545|ref|YP_001540797.1| - 0.013 15.5 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HTH_36 PF13730.6 gi|159041545|ref|YP_001540797.1| - 0.019 14.9 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.11 gi|159041545|ref|YP_001540797.1| - 0.02 14.9 0.1 0.054 13.5 0.0 1.7 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_28 PF13518.6 gi|159041545|ref|YP_001540797.1| - 0.022 14.9 0.0 0.063 13.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MetW PF07021.12 gi|159041545|ref|YP_001540797.1| - 0.022 14.4 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW HTH_23 PF13384.6 gi|159041545|ref|YP_001540797.1| - 0.026 14.3 0.2 0.071 12.9 0.0 1.7 2 0 0 2 2 1 0 Homeodomain-like domain Methyltransf_23 PF13489.6 gi|159041545|ref|YP_001540797.1| - 0.027 14.3 0.0 0.068 13.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain HTH_IclR PF09339.10 gi|159041545|ref|YP_001540797.1| - 0.036 13.9 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|159041545|ref|YP_001540797.1| - 0.038 13.7 0.1 0.083 12.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.6 gi|159041545|ref|YP_001540797.1| - 0.04 14.0 0.1 0.12 12.4 0.1 1.8 2 0 0 2 2 1 0 Winged helix-turn helix HTH_20 PF12840.7 gi|159041545|ref|YP_001540797.1| - 0.045 13.8 0.0 0.084 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|159041545|ref|YP_001540797.1| - 0.046 13.7 0.3 0.1 12.6 0.3 1.6 1 0 0 1 1 1 0 HTH domain Methyltransf_24 PF13578.6 gi|159041545|ref|YP_001540797.1| - 0.054 14.5 0.0 0.21 12.6 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|159041545|ref|YP_001540797.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Sigma70_r4 PF04545.16 gi|159041545|ref|YP_001540797.1| - 0.084 12.4 0.2 0.2 11.2 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.12 gi|159041545|ref|YP_001540797.1| - 0.088 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Sigma70_r3 PF04539.16 gi|159041545|ref|YP_001540797.1| - 0.09 12.9 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 PqqD PF05402.12 gi|159041545|ref|YP_001540797.1| - 0.11 12.8 0.1 0.64 10.4 0.1 2.2 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_Crp_2 PF13545.6 gi|159041545|ref|YP_001540797.1| - 0.11 12.5 0.1 0.27 11.3 0.1 1.7 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_Mga PF08280.11 gi|159041545|ref|YP_001540797.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DprA_WH PF17782.1 gi|159041545|ref|YP_001540797.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain N6_N4_Mtase PF01555.18 gi|159041545|ref|YP_001540797.1| - 0.17 11.6 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA methylase RPA_C PF08784.11 gi|159041545|ref|YP_001540797.1| - 0.19 12.4 0.0 0.35 11.6 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal DS PF01916.17 gi|159041546|ref|YP_001540798.1| - 6.1e-92 307.9 0.0 7.1e-92 307.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glycos_transf_4 PF00953.21 gi|159041547|ref|YP_001540799.1| - 1.4e-24 86.8 18.4 1.4e-24 86.8 18.4 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 4 DUF3487 PF11990.8 gi|159041547|ref|YP_001540799.1| - 0.16 11.8 0.1 0.16 11.8 0.1 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF3487) Caps_synth_CapC PF14102.6 gi|159041548|ref|YP_001540800.1| - 0.011 16.1 3.5 0.012 16.0 3.5 1.1 1 0 0 1 1 1 0 Capsule biosynthesis CapC FixQ PF05545.11 gi|159041548|ref|YP_001540800.1| - 0.029 14.3 1.4 0.029 14.3 1.4 1.8 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ ABC_export PF16962.5 gi|159041548|ref|YP_001540800.1| - 0.05 12.1 5.7 0.049 12.1 5.7 1.0 1 0 0 1 1 1 0 Putative ABC exporter PhoR PF11808.8 gi|159041548|ref|YP_001540800.1| - 0.18 12.2 5.5 0.21 12.0 5.5 1.2 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR DUF2207 PF09972.9 gi|159041548|ref|YP_001540800.1| - 0.29 9.8 4.7 0.28 9.9 4.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4131 PF13567.6 gi|159041548|ref|YP_001540800.1| - 3 7.4 5.5 3.4 7.3 5.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Aldedh PF00171.22 gi|159041549|ref|YP_001540801.1| - 1.4e-112 376.5 0.0 1.7e-112 376.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|159041549|ref|YP_001540801.1| - 4.4e-05 22.7 0.0 0.00011 21.4 0.0 1.7 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) HTH_23 PF13384.6 gi|159041550|ref|YP_001540802.1| - 0.0011 18.7 1.7 0.016 15.0 0.6 2.2 2 0 0 2 2 2 1 Homeodomain-like domain KH_1 PF00013.29 gi|159041550|ref|YP_001540802.1| - 0.0016 18.2 2.3 0.0016 18.2 2.3 2.2 2 0 0 2 2 2 1 KH domain KH_8 PF17903.1 gi|159041550|ref|YP_001540802.1| - 0.053 13.6 0.2 0.11 12.6 0.2 1.5 1 0 0 1 1 1 0 Krr1 KH1 domain HTH_28 PF13518.6 gi|159041550|ref|YP_001540802.1| - 0.055 13.6 0.8 0.2 11.8 0.3 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain KH_2 PF07650.17 gi|159041550|ref|YP_001540802.1| - 0.64 9.9 6.9 0.19 11.6 1.3 2.2 2 0 0 2 2 2 0 KH domain BON PF04972.17 gi|159041550|ref|YP_001540802.1| - 0.97 9.8 7.9 9.8 6.6 0.4 2.5 2 0 0 2 2 2 0 BON domain Meth_synt_2 PF01717.18 gi|159041551|ref|YP_001540803.1| - 8.1e-31 107.5 0.0 5e-18 65.4 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|159041551|ref|YP_001540803.1| - 0.002 17.7 0.0 0.034 13.6 0.0 2.5 3 0 0 3 3 3 1 Cobalamin-independent synthase, N-terminal domain DUF262 PF03235.14 gi|159041551|ref|YP_001540803.1| - 0.062 13.5 0.0 0.11 12.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF262 TGS PF02824.21 gi|159041552|ref|YP_001540804.1| - 2.8e-17 62.5 0.0 6.1e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|159041552|ref|YP_001540804.1| - 1.5e-08 34.6 0.1 2.7e-08 33.7 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|159041552|ref|YP_001540804.1| - 6.3e-06 26.2 0.0 1.9e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase YchF-GTPase_C PF06071.13 gi|159041552|ref|YP_001540804.1| - 0.00065 19.8 0.0 0.5 10.6 0.0 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF933) DUF3954 PF13128.6 gi|159041552|ref|YP_001540804.1| - 0.077 12.8 0.1 16 5.4 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) FeoB_N PF02421.18 gi|159041552|ref|YP_001540804.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B Abhydrolase_3 PF07859.13 gi|159041553|ref|YP_001540805.1| - 4.7e-74 248.8 0.0 6e-74 248.4 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|159041553|ref|YP_001540805.1| - 5.2e-13 48.7 1.3 1.8e-12 46.9 1.4 1.6 1 1 0 1 1 1 1 Carboxylesterase family Chlorophyllase2 PF12740.7 gi|159041553|ref|YP_001540805.1| - 2.7e-07 29.7 0.0 4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Say1_Mug180 PF10340.9 gi|159041553|ref|YP_001540805.1| - 4.9e-05 22.4 0.0 6.6e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Steryl acetyl hydrolase Peptidase_S9 PF00326.21 gi|159041553|ref|YP_001540805.1| - 0.00017 21.2 0.0 0.0005 19.6 0.0 1.6 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.12 gi|159041553|ref|YP_001540805.1| - 0.0065 15.2 0.1 0.43 9.2 0.1 2.1 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Chlorophyllase PF07224.11 gi|159041553|ref|YP_001540805.1| - 0.0075 15.3 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase DLH PF01738.18 gi|159041553|ref|YP_001540805.1| - 0.019 14.6 0.0 0.92 9.0 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF2974 PF11187.8 gi|159041553|ref|YP_001540805.1| - 0.028 14.0 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Abhydrolase_6 PF12697.7 gi|159041553|ref|YP_001540805.1| - 0.06 13.9 0.3 0.092 13.3 0.3 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family Lipase_3 PF01764.25 gi|159041553|ref|YP_001540805.1| - 0.069 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Hydrolase_4 PF12146.8 gi|159041553|ref|YP_001540805.1| - 0.14 11.4 0.0 0.27 10.5 0.0 1.5 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|159041553|ref|YP_001540805.1| - 0.14 12.2 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain TPP_enzyme_M PF00205.22 gi|159041554|ref|YP_001540806.1| - 2.6e-37 127.6 0.4 3.4e-36 124.0 0.1 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|159041554|ref|YP_001540806.1| - 1.8e-32 112.2 0.0 1.5e-31 109.3 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|159041554|ref|YP_001540806.1| - 1.1e-26 93.5 0.0 3.7e-26 91.7 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Flavin_Reduct PF01613.18 gi|159041555|ref|YP_001540807.1| - 2.2e-25 89.5 0.0 3.1e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain Radical_SAM PF04055.21 gi|159041556|ref|YP_001540808.1| - 6.4e-13 49.4 0.0 1.1e-12 48.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|159041556|ref|YP_001540808.1| - 1.9e-07 31.4 0.0 3.4e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159041556|ref|YP_001540808.1| - 0.0029 17.7 0.0 0.0065 16.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ion_trans_2 PF07885.16 gi|159041558|ref|YP_001540810.1| - 2.7e-17 62.5 7.4 6.4e-17 61.3 7.4 1.6 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 gi|159041558|ref|YP_001540810.1| - 1.6e-10 41.2 0.2 4e-10 40.0 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain Ion_trans PF00520.31 gi|159041558|ref|YP_001540810.1| - 3.9e-09 36.1 3.3 6.2e-09 35.4 3.3 1.2 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.21 gi|159041558|ref|YP_001540810.1| - 2.5e-08 33.6 0.6 1.1e-07 31.5 0.4 2.2 2 0 0 2 2 2 1 TrkA-C domain Lig_chan PF00060.26 gi|159041558|ref|YP_001540810.1| - 7.5e-05 22.6 0.6 0.0002 21.2 0.5 1.6 1 1 0 1 1 1 1 Ligand-gated ion channel Castor_Poll_mid PF06241.12 gi|159041558|ref|YP_001540810.1| - 0.00033 20.6 0.0 0.00071 19.5 0.0 1.6 1 0 0 1 1 1 1 Castor and Pollux, part of voltage-gated ion channel IRK PF01007.20 gi|159041558|ref|YP_001540810.1| - 0.0039 17.0 0.6 0.0065 16.3 0.6 1.3 1 0 0 1 1 1 1 Inward rectifier potassium channel transmembrane domain Prok-E2_C PF14459.6 gi|159041558|ref|YP_001540810.1| - 0.081 13.1 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 Prokaryotic E2 family C PALP PF00291.25 gi|159041559|ref|YP_001540811.1| - 2.1e-38 132.4 0.1 2.7e-38 132.1 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|159041559|ref|YP_001540811.1| - 0.22 11.7 0.4 5.2 7.3 0.0 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF521 PF04412.13 gi|159041560|ref|YP_001540812.1| - 8.7e-107 357.3 0.0 9.8e-107 357.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Lar_restr_allev PF14354.6 gi|159041561|ref|YP_001540813.1| - 0.00048 20.4 0.2 0.00068 20.0 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|159041561|ref|YP_001540813.1| - 0.0038 16.9 0.1 0.0054 16.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S27 DUF3268 PF11672.8 gi|159041561|ref|YP_001540813.1| - 0.0084 16.4 0.7 0.025 14.9 0.7 1.7 1 1 0 1 1 1 1 zinc-finger-containing domain Zn_ribbon_SprT PF17283.2 gi|159041561|ref|YP_001540813.1| - 0.015 15.2 0.6 0.015 15.2 0.6 1.8 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|159041561|ref|YP_001540813.1| - 0.03 14.3 0.2 0.096 12.7 0.2 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.6 gi|159041561|ref|YP_001540813.1| - 0.041 13.8 0.2 0.069 13.1 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|159041561|ref|YP_001540813.1| - 0.061 12.8 3.0 0.67 9.4 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|159041561|ref|YP_001540813.1| - 0.064 13.4 0.3 0.12 12.5 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|159041561|ref|YP_001540813.1| - 0.071 13.1 0.6 0.16 12.0 0.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2072 PF09845.9 gi|159041561|ref|YP_001540813.1| - 0.17 12.2 1.4 0.41 10.9 1.4 1.7 1 1 0 1 1 1 0 Zn-ribbon containing protein TF_Zn_Ribbon PF08271.12 gi|159041561|ref|YP_001540813.1| - 0.17 11.4 3.2 0.51 9.9 3.2 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-CSL PF05207.13 gi|159041561|ref|YP_001540813.1| - 0.99 9.2 4.7 2.7 7.8 4.7 1.7 1 1 0 1 1 1 0 CSL zinc finger SWIM PF04434.17 gi|159041562|ref|YP_001540814.1| - 0.0073 16.0 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger Methyltransf_11 PF08241.12 gi|159041563|ref|YP_001540815.1| - 1.3e-16 61.0 0.0 1.9e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041563|ref|YP_001540815.1| - 9.4e-16 58.3 0.0 1.4e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159041563|ref|YP_001540815.1| - 7.2e-10 39.5 0.1 1.1e-09 38.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159041563|ref|YP_001540815.1| - 3.6e-07 29.8 0.0 4.6e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|159041563|ref|YP_001540815.1| - 1.1e-05 25.5 0.1 2.5e-05 24.2 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_31 PF13847.6 gi|159041563|ref|YP_001540815.1| - 1.3e-05 25.1 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 gi|159041563|ref|YP_001540815.1| - 0.006 15.8 0.0 0.0068 15.6 0.0 1.2 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent CMAS PF02353.20 gi|159041563|ref|YP_001540815.1| - 0.008 15.5 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase AAA_29 PF13555.6 gi|159041564|ref|YP_001540816.1| - 0.0043 16.8 0.1 0.011 15.4 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|159041564|ref|YP_001540816.1| - 0.012 16.0 0.1 0.055 13.8 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|159041564|ref|YP_001540816.1| - 0.012 15.9 0.1 0.22 11.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|159041564|ref|YP_001540816.1| - 0.012 16.1 0.0 0.024 15.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|159041564|ref|YP_001540816.1| - 0.016 15.7 0.1 0.1 13.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|159041564|ref|YP_001540816.1| - 0.03 13.8 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.18 gi|159041564|ref|YP_001540816.1| - 0.043 13.6 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|159041564|ref|YP_001540816.1| - 0.046 14.0 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|159041564|ref|YP_001540816.1| - 0.067 13.2 0.1 6.9 6.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|159041564|ref|YP_001540816.1| - 0.076 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Ploopntkinase3 PF18751.1 gi|159041564|ref|YP_001540816.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 Zeta_toxin PF06414.12 gi|159041564|ref|YP_001540816.1| - 0.12 11.7 0.0 0.44 9.8 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_23 PF13476.6 gi|159041564|ref|YP_001540816.1| - 0.12 12.9 0.1 0.22 12.0 0.1 1.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|159041564|ref|YP_001540816.1| - 0.14 12.1 0.5 0.45 10.4 0.0 2.1 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|159041564|ref|YP_001540816.1| - 0.17 12.0 0.3 0.35 11.0 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase MFS_1 PF07690.16 gi|159041565|ref|YP_001540817.1| - 2.3e-30 105.7 42.8 5.9e-30 104.4 42.8 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159041565|ref|YP_001540817.1| - 6.2e-05 22.0 31.3 0.00023 20.2 31.3 2.0 1 1 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.13 gi|159041565|ref|YP_001540817.1| - 0.00012 20.7 8.3 0.00012 20.7 8.3 1.7 2 0 0 2 2 2 1 Transmembrane secretion effector AP_endonuc_2 PF01261.24 gi|159041566|ref|YP_001540818.1| - 3e-26 92.2 0.0 3.8e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|159041566|ref|YP_001540818.1| - 9e-05 21.8 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF4121 PF13497.6 gi|159041566|ref|YP_001540818.1| - 0.0022 17.2 0.1 0.0032 16.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4121) Macro_2 PF14519.6 gi|159041566|ref|YP_001540818.1| - 0.087 12.2 0.0 0.22 10.8 0.0 1.7 1 1 0 1 1 1 0 Macro-like domain ApeA_NTD1 PF18862.1 gi|159041566|ref|YP_001540818.1| - 0.23 11.0 0.0 0.32 10.5 0.0 1.1 1 0 0 1 1 1 0 ApeA N-terminal domain 1 tRNA_NucTransf2 PF09249.11 gi|159041567|ref|YP_001540819.1| - 3.1e-40 136.9 0.0 7.1e-40 135.8 0.0 1.6 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|159041567|ref|YP_001540819.1| - 3.6e-10 40.0 0.0 1.2e-09 38.3 0.0 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|159041567|ref|YP_001540819.1| - 1.8e-06 28.3 0.0 3.2e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain TerD PF02342.18 gi|159041567|ref|YP_001540819.1| - 0.064 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 TerD domain NTP_transferase PF00483.23 gi|159041568|ref|YP_001540820.1| - 2.5e-32 112.4 0.0 2.9e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|159041568|ref|YP_001540820.1| - 8.3e-14 52.2 0.0 1.1e-13 51.8 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|159041568|ref|YP_001540820.1| - 6.1e-06 26.1 0.0 2.8e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|159041568|ref|YP_001540820.1| - 0.0044 16.9 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4224) ADD_ATRX PF17981.1 gi|159041569|ref|YP_001540821.1| - 0.001 18.9 0.5 0.0038 17.0 0.2 1.9 2 0 0 2 2 2 1 Cysteine Rich ADD domain zf-C4_Topoisom PF01396.19 gi|159041569|ref|YP_001540821.1| - 0.018 14.8 1.0 0.064 13.1 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|159041569|ref|YP_001540821.1| - 0.11 12.6 0.8 0.56 10.4 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|159041569|ref|YP_001540821.1| - 0.18 11.8 0.4 0.36 10.8 0.4 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|159041569|ref|YP_001540821.1| - 4.9 7.2 7.2 55 3.8 7.2 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon AA_kinase PF00696.28 gi|159041570|ref|YP_001540822.1| - 3.8e-31 108.5 0.0 4.4e-31 108.3 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Glyco_hydro_76 PF03663.14 gi|159041571|ref|YP_001540823.1| - 1.6e-50 172.6 6.0 2.2e-50 172.2 6.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 76 GlcNAc_2-epim PF07221.11 gi|159041571|ref|YP_001540823.1| - 4.5e-05 22.9 0.4 0.0034 16.7 0.1 2.9 1 1 1 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_127 PF07944.12 gi|159041571|ref|YP_001540823.1| - 6.8e-05 21.6 0.2 0.32 9.4 0.0 2.8 2 1 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 gi|159041571|ref|YP_001540823.1| - 0.00044 19.4 0.4 0.49 9.4 0.3 3.0 1 1 2 3 3 3 2 Glycosyl Hydrolase Family 88 LANC_like PF05147.13 gi|159041571|ref|YP_001540823.1| - 0.067 11.8 0.9 0.93 8.0 0.1 2.4 3 0 0 3 3 3 0 Lanthionine synthetase C-like protein RIFIN PF02009.16 gi|159041571|ref|YP_001540823.1| - 0.34 10.8 6.5 0.53 10.1 6.5 1.2 1 0 0 1 1 1 0 Rifin C5-epim_C PF06662.13 gi|159041571|ref|YP_001540823.1| - 0.63 9.5 7.4 12 5.4 0.8 4.0 4 1 1 5 5 5 0 D-glucuronyl C5-epimerase C-terminus UPF0004 PF00919.20 gi|159041572|ref|YP_001540824.1| - 1.2e-21 76.6 0.0 2.2e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|159041572|ref|YP_001540824.1| - 1.5e-21 77.5 0.0 3.2e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Glyco_trans_1_4 PF13692.6 gi|159041572|ref|YP_001540824.1| - 0.012 16.1 0.0 0.88 10.0 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferases group 1 TRAM_2 PF18693.1 gi|159041572|ref|YP_001540824.1| - 0.013 15.6 0.1 0.033 14.4 0.1 1.7 1 0 0 1 1 1 0 TRAM domain TRAM PF01938.20 gi|159041572|ref|YP_001540824.1| - 0.031 14.3 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 TRAM domain ACT PF01842.25 gi|159041573|ref|YP_001540825.1| - 1.9e-07 30.8 0.0 9.9e-07 28.4 0.0 2.0 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|159041573|ref|YP_001540825.1| - 0.045 13.7 0.0 0.12 12.4 0.0 1.6 2 0 0 2 2 2 0 ACT domain Cupin_2 PF07883.11 gi|159041574|ref|YP_001540826.1| - 2e-14 53.0 0.1 3.1e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|159041574|ref|YP_001540826.1| - 3.7e-08 33.4 0.0 4.8e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.14 gi|159041574|ref|YP_001540826.1| - 0.0011 19.2 0.0 0.0012 19.1 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family DMSP_lyase PF16867.5 gi|159041574|ref|YP_001540826.1| - 0.0025 17.5 0.0 0.0032 17.1 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase EutQ PF06249.12 gi|159041574|ref|YP_001540826.1| - 0.0059 16.4 0.0 0.0061 16.3 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_1 PF00190.22 gi|159041574|ref|YP_001540826.1| - 0.018 14.6 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Cupin KduI PF04962.12 gi|159041574|ref|YP_001540826.1| - 0.021 14.2 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family CENP-C_C PF11699.8 gi|159041574|ref|YP_001540826.1| - 0.022 14.9 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_7 PF12973.7 gi|159041574|ref|YP_001540826.1| - 0.03 14.2 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain MannoseP_isomer PF01050.18 gi|159041574|ref|YP_001540826.1| - 0.033 14.1 0.1 0.037 13.9 0.1 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|159041574|ref|YP_001540826.1| - 0.082 12.6 0.0 0.12 12.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) zf-C2H2 PF00096.26 gi|159041575|ref|YP_001540827.1| - 0.044 14.2 3.4 0.54 10.8 0.7 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|159041575|ref|YP_001540827.1| - 0.054 14.0 1.5 0.11 13.0 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger double domain Rad50_zn_hook PF04423.14 gi|159041575|ref|YP_001540827.1| - 0.078 12.8 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif UPF0547 PF10571.9 gi|159041575|ref|YP_001540827.1| - 0.078 13.1 0.9 0.078 13.1 0.9 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF951 PF06107.11 gi|159041575|ref|YP_001540827.1| - 0.082 12.8 0.3 0.23 11.4 0.3 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) TF_Zn_Ribbon PF08271.12 gi|159041575|ref|YP_001540827.1| - 0.087 12.4 0.8 2.7 7.6 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|159041575|ref|YP_001540827.1| - 0.1 12.8 0.8 7.6 6.8 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-C2H2_4 PF13894.6 gi|159041575|ref|YP_001540827.1| - 0.14 13.0 2.2 1.4 10.0 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|159041575|ref|YP_001540827.1| - 0.16 11.7 5.6 1.1 9.1 1.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Thioredoxin_3 PF13192.6 gi|159041575|ref|YP_001540827.1| - 0.17 11.9 0.6 4.8 7.3 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin domain zf-ribbon_3 PF13248.6 gi|159041575|ref|YP_001540827.1| - 3.6 7.1 6.6 0.5 9.9 1.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain UPF0179 PF03684.13 gi|159041577|ref|YP_001540829.1| - 5.9e-21 74.8 0.0 7.4e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Robl_LC7 PF03259.17 gi|159041578|ref|YP_001540830.1| - 2.6e-05 23.9 0.1 4.3e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|159041578|ref|YP_001540830.1| - 0.031 14.1 0.0 0.036 13.9 0.0 1.1 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting DUF2156 PF09924.9 gi|159041578|ref|YP_001540830.1| - 0.11 11.5 0.0 1.2 8.1 0.0 1.9 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2156) LUD_dom PF02589.15 gi|159041579|ref|YP_001540831.1| - 5.2e-52 176.3 0.1 7.5e-52 175.8 0.1 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|159041579|ref|YP_001540831.1| - 1e-09 38.7 1.3 1.8e-09 37.9 1.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159041579|ref|YP_001540831.1| - 7.3e-07 29.6 2.4 2.2e-06 28.1 2.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041579|ref|YP_001540831.1| - 6.2e-06 26.7 3.4 1.2e-05 25.8 3.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159041579|ref|YP_001540831.1| - 1e-05 25.5 7.4 0.0018 18.4 8.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|159041579|ref|YP_001540831.1| - 0.00014 21.6 0.8 0.015 15.1 0.1 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|159041579|ref|YP_001540831.1| - 0.00029 20.5 6.3 0.0032 17.2 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|159041579|ref|YP_001540831.1| - 0.00031 20.6 6.4 0.067 13.3 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159041579|ref|YP_001540831.1| - 0.002 18.3 5.7 0.078 13.2 7.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159041579|ref|YP_001540831.1| - 0.0057 16.7 0.8 0.0057 16.7 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041579|ref|YP_001540831.1| - 0.01 16.0 3.1 0.15 12.2 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159041579|ref|YP_001540831.1| - 0.019 15.9 4.3 0.42 11.6 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain VASP_tetra PF08776.11 gi|159041579|ref|YP_001540831.1| - 0.081 12.5 0.7 0.16 11.6 0.7 1.4 1 0 0 1 1 1 0 VASP tetramerisation domain Fer4_4 PF12800.7 gi|159041579|ref|YP_001540831.1| - 0.12 12.9 6.4 0.86 10.3 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|159041579|ref|YP_001540831.1| - 0.15 13.0 3.6 1.2 10.0 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain IF2_N PF04760.15 gi|159041579|ref|YP_001540831.1| - 0.22 11.3 0.7 0.69 9.8 0.3 1.9 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Trehalase PF01204.18 gi|159041580|ref|YP_001540832.1| - 2.3e-24 86.1 0.3 2.6e-21 76.1 0.1 2.1 1 1 1 2 2 2 2 Trehalase Glyco_hydro_63 PF03200.16 gi|159041580|ref|YP_001540832.1| - 1.6e-23 83.2 8.3 5.1e-12 45.3 3.5 3.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 63 C-terminal domain Lar_restr_allev PF14354.6 gi|159041582|ref|YP_001540834.1| - 0.0004 20.7 0.0 0.00045 20.5 0.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Elf1 PF05129.13 gi|159041582|ref|YP_001540834.1| - 0.0032 17.5 0.1 0.004 17.2 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|159041582|ref|YP_001540834.1| - 0.0059 16.5 0.6 0.0086 16.0 0.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|159041582|ref|YP_001540834.1| - 0.0073 16.1 1.1 0.18 11.6 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.6 gi|159041582|ref|YP_001540834.1| - 0.0099 15.2 1.4 0.014 14.7 1.4 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger TackOD1 PF18551.1 gi|159041582|ref|YP_001540834.1| - 0.013 15.2 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|159041582|ref|YP_001540834.1| - 0.023 14.7 0.2 0.031 14.3 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|159041582|ref|YP_001540834.1| - 0.025 14.2 0.6 3.7 7.2 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rep_fac-A_C PF08646.10 gi|159041582|ref|YP_001540834.1| - 0.033 13.9 0.4 0.038 13.7 0.4 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-ribbon_3 PF13248.6 gi|159041582|ref|YP_001540834.1| - 0.047 13.1 0.3 0.83 9.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|159041582|ref|YP_001540834.1| - 0.049 13.4 3.4 0.14 12.0 3.4 1.7 1 1 0 1 1 1 0 Cysteine-rich KTR DZR PF12773.7 gi|159041582|ref|YP_001540834.1| - 0.059 13.4 0.3 0.1 12.7 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon DpnI PF06044.12 gi|159041582|ref|YP_001540834.1| - 0.098 12.3 0.2 0.11 12.1 0.2 1.1 1 0 0 1 1 1 0 Dam-replacing family HypA PF01155.19 gi|159041582|ref|YP_001540834.1| - 0.11 12.6 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|159041582|ref|YP_001540834.1| - 0.21 11.4 3.0 1.4 8.7 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain CitMHS PF03600.16 gi|159041583|ref|YP_001540835.1| - 3.4e-36 125.0 39.3 3.4e-36 125.0 39.3 1.4 1 1 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 gi|159041583|ref|YP_001540835.1| - 1.4e-09 37.5 29.6 2.4e-05 23.6 7.7 2.2 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region DUF3483 PF11982.8 gi|159041583|ref|YP_001540835.1| - 0.0054 16.4 4.1 0.0054 16.4 4.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3483) CoA_binding PF02629.19 gi|159041584|ref|YP_001540836.1| - 0.00014 22.5 0.2 0.00033 21.3 0.2 1.6 1 0 0 1 1 1 1 CoA binding domain Gp_dh_N PF00044.24 gi|159041584|ref|YP_001540836.1| - 0.048 14.0 0.6 0.59 10.5 0.3 2.5 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|159041584|ref|YP_001540836.1| - 0.097 13.5 0.0 0.19 12.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold GATase_6 PF13522.6 gi|159041585|ref|YP_001540837.1| - 5.4e-14 52.5 0.0 8.3e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain ACT_4 PF13291.6 gi|159041585|ref|YP_001540837.1| - 0.024 15.2 0.2 1.8 9.2 0.0 2.3 2 0 0 2 2 2 0 ACT domain tRNA-synt_1d PF00750.19 gi|159041586|ref|YP_001540838.1| - 1.2e-29 103.4 1.2 1.4e-17 63.7 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|159041586|ref|YP_001540838.1| - 2.2e-26 92.4 0.2 1.6e-25 89.6 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1g PF09334.11 gi|159041586|ref|YP_001540838.1| - 0.00054 18.8 0.2 0.12 11.1 0.0 3.5 3 1 1 4 4 4 1 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|159041586|ref|YP_001540838.1| - 0.00081 18.4 0.1 4.6 6.1 0.0 3.8 3 1 1 4 4 4 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|159041586|ref|YP_001540838.1| - 0.0069 14.7 0.2 0.018 13.3 0.2 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) CobN-Mg_chel PF02514.16 gi|159041586|ref|YP_001540838.1| - 0.017 12.9 0.1 0.81 7.4 0.0 2.0 2 0 0 2 2 2 0 CobN/Magnesium Chelatase tRNA-synt_1e PF01406.19 gi|159041586|ref|YP_001540838.1| - 0.056 12.8 0.1 0.16 11.3 0.1 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain ATPase PF06745.13 gi|159041587|ref|YP_001540839.1| - 0.018 14.4 0.1 0.02 14.3 0.1 1.1 1 0 0 1 1 1 0 KaiC DMP12 PF16779.5 gi|159041587|ref|YP_001540839.1| - 0.064 13.2 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 DNA-mimic protein Sensor PF13796.6 gi|159041587|ref|YP_001540839.1| - 0.079 13.0 0.0 0.096 12.7 0.0 1.1 1 0 0 1 1 1 0 Putative sensor ODV-E18 PF10717.9 gi|159041587|ref|YP_001540839.1| - 0.24 11.3 0.9 0.41 10.5 0.9 1.3 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 SIMPL PF04402.14 gi|159041588|ref|YP_001540840.1| - 1.1e-19 71.7 0.6 1.3e-19 71.5 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Mut7-C PF01927.16 gi|159041589|ref|YP_001540841.1| - 3e-24 85.8 0.0 4.4e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain Lar_restr_allev PF14354.6 gi|159041589|ref|YP_001540841.1| - 0.045 14.1 0.1 0.086 13.2 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|159041589|ref|YP_001540841.1| - 0.091 12.9 0.1 8.1 6.7 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|159041589|ref|YP_001540841.1| - 0.12 12.2 1.9 0.78 9.6 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Resolvase PF00239.21 gi|159041590|ref|YP_001540842.1| - 3.1e-36 124.7 0.4 4.7e-36 124.1 0.4 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain ESX-1_EspG PF14011.6 gi|159041590|ref|YP_001540842.1| - 0.00098 18.8 0.1 0.0015 18.2 0.1 1.3 1 0 0 1 1 1 1 EspG family OrfB_Zn_ribbon PF07282.11 gi|159041590|ref|YP_001540842.1| - 0.0029 17.5 1.9 0.0044 16.9 0.7 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|159041590|ref|YP_001540842.1| - 0.0062 16.3 1.0 0.014 15.2 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|159041590|ref|YP_001540842.1| - 0.037 14.2 0.1 0.15 12.2 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|159041590|ref|YP_001540842.1| - 0.051 13.1 0.4 0.095 12.2 0.4 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_photolyase PF00875.18 gi|159041590|ref|YP_001540842.1| - 0.051 13.6 0.1 0.16 12.0 0.1 1.8 1 1 0 1 1 1 0 DNA photolyase Pox_F16 PF04708.12 gi|159041590|ref|YP_001540842.1| - 0.082 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Poxvirus F16 protein Phage_antitermQ PF06530.12 gi|159041590|ref|YP_001540842.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Phage antitermination protein Q HTH_9 PF08221.11 gi|159041590|ref|YP_001540842.1| - 0.14 12.3 0.1 0.39 10.9 0.1 1.8 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF1610 PF07754.11 gi|159041590|ref|YP_001540842.1| - 0.21 11.6 0.2 0.21 11.6 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-FPG_IleRS PF06827.14 gi|159041590|ref|YP_001540842.1| - 8 6.4 9.0 1e+02 2.9 9.1 2.3 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS HicB_lk_antitox PF15919.5 gi|159041591|ref|YP_001540843.1| - 0.082 13.0 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system MgtE_N PF03448.17 gi|159041591|ref|YP_001540843.1| - 0.088 13.4 0.3 0.89 10.2 0.1 2.1 1 1 1 2 2 2 0 MgtE intracellular N domain SUB1_ProdP9 PF18213.1 gi|159041591|ref|YP_001540843.1| - 0.097 12.5 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 SUB1 protease Prodomain ProdP9 Isochorismatase PF00857.20 gi|159041592|ref|YP_001540844.1| - 2e-37 129.0 0.0 2.3e-37 128.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Tropomyosin_1 PF12718.7 gi|159041593|ref|YP_001540845.1| - 0.002 18.3 0.1 0.003 17.7 0.1 1.2 1 0 0 1 1 1 1 Tropomyosin like GrpE PF01025.19 gi|159041593|ref|YP_001540845.1| - 0.0031 17.2 0.2 0.0053 16.4 0.2 1.3 1 0 0 1 1 1 1 GrpE Prefoldin_2 PF01920.20 gi|159041593|ref|YP_001540845.1| - 0.0044 17.0 1.0 0.014 15.3 0.2 1.9 2 0 0 2 2 2 1 Prefoldin subunit DUF4407 PF14362.6 gi|159041593|ref|YP_001540845.1| - 0.0062 15.9 0.0 0.0081 15.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) ABC_tran_CTD PF16326.5 gi|159041593|ref|YP_001540845.1| - 0.013 15.7 0.3 0.024 14.9 0.3 1.4 1 0 0 1 1 1 0 ABC transporter C-terminal domain Tropomyosin PF00261.20 gi|159041593|ref|YP_001540845.1| - 0.018 14.4 0.2 0.025 14.0 0.2 1.2 1 0 0 1 1 1 0 Tropomyosin Vps53_N PF04100.12 gi|159041593|ref|YP_001540845.1| - 0.019 13.9 0.1 0.025 13.6 0.1 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal PKcGMP_CC PF16808.5 gi|159041593|ref|YP_001540845.1| - 0.027 14.3 2.9 0.033 14.0 0.6 2.2 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase XhlA PF10779.9 gi|159041593|ref|YP_001540845.1| - 0.034 14.4 0.3 0.061 13.5 0.3 1.4 1 0 0 1 1 1 0 Haemolysin XhlA DUF16 PF01519.16 gi|159041593|ref|YP_001540845.1| - 0.035 14.6 0.5 0.055 14.0 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF5082 PF16888.5 gi|159041593|ref|YP_001540845.1| - 0.047 14.0 0.3 0.074 13.3 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) Prefoldin PF02996.17 gi|159041593|ref|YP_001540845.1| - 0.05 13.5 0.4 0.1 12.6 0.4 1.5 1 0 0 1 1 1 0 Prefoldin subunit Jnk-SapK_ap_N PF09744.9 gi|159041593|ref|YP_001540845.1| - 0.055 13.7 0.7 0.1 12.9 0.2 1.6 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF1515 PF07439.11 gi|159041593|ref|YP_001540845.1| - 0.055 13.5 0.3 0.082 12.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) SlyX PF04102.12 gi|159041593|ref|YP_001540845.1| - 0.06 14.0 1.1 0.11 13.1 1.1 1.4 1 0 0 1 1 1 0 SlyX bZIP_1 PF00170.21 gi|159041593|ref|YP_001540845.1| - 0.069 13.3 0.2 0.11 12.6 0.2 1.3 1 0 0 1 1 1 0 bZIP transcription factor Ax_dynein_light PF10211.9 gi|159041593|ref|YP_001540845.1| - 0.079 12.9 0.2 0.11 12.5 0.2 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain BLOC1_2 PF10046.9 gi|159041593|ref|YP_001540845.1| - 0.084 13.2 0.4 0.23 11.8 0.2 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YvrJ PF12841.7 gi|159041593|ref|YP_001540845.1| - 0.094 12.3 0.4 0.79 9.3 0.1 2.3 1 1 1 2 2 2 0 YvrJ protein family DivIC PF04977.15 gi|159041593|ref|YP_001540845.1| - 0.097 12.5 0.5 0.17 11.7 0.5 1.4 1 0 0 1 1 1 0 Septum formation initiator Spc7 PF08317.11 gi|159041593|ref|YP_001540845.1| - 0.12 11.2 0.2 0.16 10.8 0.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|159041593|ref|YP_001540845.1| - 0.13 12.7 0.9 0.26 11.7 0.9 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Spc24 PF08286.11 gi|159041593|ref|YP_001540845.1| - 0.13 12.5 0.2 0.26 11.5 0.2 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF2538 PF10804.8 gi|159041593|ref|YP_001540845.1| - 0.19 11.5 0.3 9.5 6.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2538) Raffinose_syn PF05691.12 gi|159041594|ref|YP_001540846.1| - 5.6e-44 150.1 1.3 3e-25 88.2 0.0 3.5 1 1 3 4 4 4 3 Raffinose synthase or seed imbibition protein Sip1 Glyco_hydro_31 PF01055.26 gi|159041594|ref|YP_001540846.1| - 0.00041 19.7 0.1 0.00057 19.2 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 TcfC PF16967.5 gi|159041595|ref|YP_001540847.1| - 0.1 12.1 0.2 0.1 12.1 0.2 2.8 4 0 0 4 4 4 0 E-set like domain ABC_tran PF00005.27 gi|159041596|ref|YP_001540848.1| - 8.5e-31 107.3 0.0 1.3e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|159041596|ref|YP_001540848.1| - 3.3e-08 34.2 0.1 1.2e-07 32.4 0.1 2.1 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|159041596|ref|YP_001540848.1| - 4.2e-06 26.8 0.0 1.5e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|159041596|ref|YP_001540848.1| - 1.2e-05 25.3 0.0 0.0041 17.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system GlcV_C_terminal PF17847.1 gi|159041596|ref|YP_001540848.1| - 1.5e-05 25.3 1.6 3.5e-05 24.2 1.6 1.7 1 0 0 1 1 1 1 Glucose ABC transporter C-terminal domain CysA_C_terminal PF17850.1 gi|159041596|ref|YP_001540848.1| - 0.00062 20.3 0.0 0.002 18.7 0.0 2.0 1 0 0 1 1 1 1 CysA C-terminal regulatory domain ABC_ATPase PF09818.9 gi|159041596|ref|YP_001540848.1| - 0.003 16.4 0.0 1.8 7.2 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|159041596|ref|YP_001540848.1| - 0.0088 16.0 0.0 0.025 14.5 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|159041596|ref|YP_001540848.1| - 0.023 14.4 0.0 0.058 13.1 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|159041596|ref|YP_001540848.1| - 0.03 14.6 0.1 0.095 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|159041596|ref|YP_001540848.1| - 0.036 14.4 0.1 0.13 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|159041596|ref|YP_001540848.1| - 0.043 13.3 0.0 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain sCache_3_2 PF17203.4 gi|159041596|ref|YP_001540848.1| - 0.059 13.5 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Single cache domain 3 SbcCD_C PF13558.6 gi|159041596|ref|YP_001540848.1| - 0.06 13.6 0.1 0.53 10.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|159041596|ref|YP_001540848.1| - 0.071 12.8 0.1 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|159041596|ref|YP_001540848.1| - 0.12 12.8 0.1 2.1 8.8 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SBP_bac_1 PF01547.25 gi|159041597|ref|YP_001540849.1| - 8.7e-08 32.5 6.6 8.7e-08 32.5 6.6 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein CwsA PF10814.8 gi|159041597|ref|YP_001540849.1| - 0.38 10.9 1.8 0.96 9.6 1.8 1.6 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA BPD_transp_1 PF00528.22 gi|159041598|ref|YP_001540850.1| - 9.5e-12 45.0 29.6 9.5e-12 45.0 29.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3188 PF11384.8 gi|159041598|ref|YP_001540850.1| - 1.3 8.8 7.6 14 5.5 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) BPD_transp_1 PF00528.22 gi|159041599|ref|YP_001540851.1| - 6.1e-20 71.7 24.0 6.1e-20 71.7 24.0 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component UCR_Fe-S_N PF10399.9 gi|159041600|ref|YP_001540852.1| - 0.66 9.4 5.0 0.98 8.8 5.0 1.2 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ThiP_synth PF10120.9 gi|159041601|ref|YP_001540853.1| - 4.3e-49 166.3 0.5 6.2e-49 165.8 0.5 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|159041601|ref|YP_001540853.1| - 1.7e-06 27.7 0.0 4.3e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.6 gi|159041601|ref|YP_001540853.1| - 3.9e-05 23.5 0.0 9.3e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|159041601|ref|YP_001540853.1| - 0.00021 21.4 0.1 0.00046 20.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|159041601|ref|YP_001540853.1| - 0.00034 20.6 0.4 0.0016 18.5 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|159041601|ref|YP_001540853.1| - 0.06 12.9 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|159041601|ref|YP_001540853.1| - 0.061 13.3 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|159041601|ref|YP_001540853.1| - 0.068 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RepB PF07506.11 gi|159041601|ref|YP_001540853.1| - 0.097 12.8 0.0 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 RepB plasmid partitioning protein YdaS_antitoxin PF15943.5 gi|159041601|ref|YP_001540853.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|159041601|ref|YP_001540853.1| - 0.16 11.6 0.0 0.36 10.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sacchrp_dh_C PF16653.5 gi|159041602|ref|YP_001540854.1| - 6.4e-21 75.6 0.0 1.4e-20 74.6 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Semialdhyde_dh PF01118.24 gi|159041602|ref|YP_001540854.1| - 8.3e-06 26.2 0.0 1.5e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|159041602|ref|YP_001540854.1| - 9.1e-06 25.9 0.1 1.6e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|159041602|ref|YP_001540854.1| - 1.1e-05 25.7 0.0 1.8e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|159041602|ref|YP_001540854.1| - 0.00045 20.5 0.1 0.00085 19.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|159041602|ref|YP_001540854.1| - 0.0027 18.2 0.1 0.0059 17.2 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|159041602|ref|YP_001540854.1| - 0.021 14.4 0.1 0.038 13.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|159041602|ref|YP_001540854.1| - 0.025 14.5 0.1 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.17 gi|159041602|ref|YP_001540854.1| - 0.029 13.4 0.1 0.12 11.3 0.0 1.9 2 0 0 2 2 2 0 Prephenate dehydrogenase DUF5362 PF17319.2 gi|159041603|ref|YP_001540855.1| - 0.042 13.7 7.8 0.042 13.7 7.8 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5362) DUF1218 PF06749.12 gi|159041603|ref|YP_001540855.1| - 0.52 10.9 6.0 0.59 10.7 1.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) DUF4064 PF13273.6 gi|159041603|ref|YP_001540855.1| - 0.53 10.6 15.4 0.28 11.5 6.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Glycophorin_A PF01102.18 gi|159041603|ref|YP_001540855.1| - 0.91 9.8 5.0 7.6 6.8 1.9 2.2 2 0 0 2 2 2 0 Glycophorin A Phage_holin_3_6 PF07332.11 gi|159041603|ref|YP_001540855.1| - 1.2 9.2 12.0 1.2 9.2 1.3 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III CRPA PF05745.11 gi|159041603|ref|YP_001540855.1| - 3.6 7.6 11.0 7.3 6.6 4.1 2.2 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF3040 PF11239.8 gi|159041603|ref|YP_001540855.1| - 4.7 7.6 11.6 4.4 7.6 1.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SdpI PF13630.6 gi|159041603|ref|YP_001540855.1| - 8.6 6.6 15.1 8.8 6.5 7.1 2.7 2 1 0 2 2 2 0 SdpI/YhfL protein family Adenosine_kin PF04008.14 gi|159041605|ref|YP_001540857.1| - 7.7e-70 233.6 0.0 8.7e-70 233.5 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DegT_DnrJ_EryC1 PF01041.17 gi|159041606|ref|YP_001540858.1| - 2.3e-110 369.3 0.0 3.1e-110 368.9 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|159041606|ref|YP_001540858.1| - 1.4e-09 37.6 0.0 2.6e-09 36.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|159041606|ref|YP_001540858.1| - 3.3e-07 29.6 0.3 3.9e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|159041606|ref|YP_001540858.1| - 8.1e-06 24.6 0.0 1.2e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|159041606|ref|YP_001540858.1| - 0.018 14.3 0.2 0.032 13.5 0.2 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase PMT PF02366.18 gi|159041607|ref|YP_001540859.1| - 6e-07 29.3 18.0 6e-07 29.3 18.0 4.5 3 3 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.6 gi|159041607|ref|YP_001540859.1| - 4.8e-05 23.6 17.1 4.8e-05 23.6 17.1 3.7 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GATase PF00117.28 gi|159041609|ref|YP_001540861.1| - 1.7e-47 161.7 0.0 2e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|159041609|ref|YP_001540861.1| - 6.7e-14 52.2 0.2 1.3e-13 51.2 0.2 1.4 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|159041610|ref|YP_001540862.1| - 5.6e-88 294.8 0.0 6.7e-88 294.6 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|159041610|ref|YP_001540862.1| - 2.7e-08 34.2 0.0 6.8e-06 26.3 0.0 2.9 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|159041611|ref|YP_001540863.1| - 6.2e-21 75.1 0.0 7.2e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.21 gi|159041612|ref|YP_001540864.1| - 4.2e-77 259.2 0.1 5.7e-77 258.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|159041612|ref|YP_001540864.1| - 1.6e-13 50.2 3.3 3.7e-13 49.1 1.5 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PALP PF00291.25 gi|159041613|ref|YP_001540865.1| - 2.9e-45 154.9 0.1 3.4e-45 154.7 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|159041614|ref|YP_001540866.1| - 7.8e-22 77.4 0.0 1e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|159041614|ref|YP_001540866.1| - 0.027 13.9 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 PcrB family His_biosynth PF00977.21 gi|159041614|ref|YP_001540866.1| - 0.03 13.8 0.1 0.087 12.3 0.0 1.7 2 1 0 2 2 2 0 Histidine biosynthesis protein NanE PF04131.14 gi|159041614|ref|YP_001540866.1| - 0.039 13.1 0.0 0.14 11.3 0.0 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Aldo_ket_red PF00248.21 gi|159041615|ref|YP_001540867.1| - 1.9e-71 240.7 0.0 2.1e-71 240.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RIO1 PF01163.22 gi|159041616|ref|YP_001540868.1| - 2.6e-37 128.3 0.1 4.1e-37 127.6 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|159041616|ref|YP_001540868.1| - 6.7e-18 64.7 0.2 1.4e-17 63.6 0.2 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|159041616|ref|YP_001540868.1| - 9e-11 42.1 1.7 5.3e-06 26.5 0.1 3.2 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|159041616|ref|YP_001540868.1| - 1.4e-07 31.2 0.0 2.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|159041616|ref|YP_001540868.1| - 7.8e-05 22.1 0.4 0.0006 19.2 0.4 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.11 gi|159041616|ref|YP_001540868.1| - 0.00098 18.8 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|159041616|ref|YP_001540868.1| - 0.0019 17.8 0.1 0.0033 17.1 0.1 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase Pkinase_fungal PF17667.1 gi|159041616|ref|YP_001540868.1| - 0.021 13.6 0.1 0.028 13.2 0.1 1.2 1 0 0 1 1 1 0 Fungal protein kinase P22_AR_N PF10547.9 gi|159041616|ref|YP_001540868.1| - 0.051 13.9 0.0 0.097 13.0 0.0 1.4 1 0 0 1 1 1 0 P22_AR N-terminal domain Pkinase_Tyr PF07714.17 gi|159041616|ref|YP_001540868.1| - 0.093 12.0 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase HTH_11 PF08279.12 gi|159041616|ref|YP_001540868.1| - 0.11 12.5 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 HTH domain PUA PF01472.20 gi|159041617|ref|YP_001540869.1| - 1.1e-20 73.4 0.6 1.9e-19 69.4 0.2 2.1 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|159041617|ref|YP_001540869.1| - 8.6e-05 22.7 0.0 0.00015 22.0 0.0 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain DUF1947 PF09183.10 gi|159041617|ref|YP_001540869.1| - 0.00029 21.1 0.8 0.00091 19.5 0.8 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) Sec61_beta PF03911.16 gi|159041618|ref|YP_001540870.1| - 0.00067 19.6 2.4 0.00072 19.5 2.4 1.1 1 0 0 1 1 1 1 Sec61beta family SKG6 PF08693.10 gi|159041618|ref|YP_001540870.1| - 0.017 14.6 4.9 0.025 14.0 4.9 1.3 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DHDPS PF00701.22 gi|159041619|ref|YP_001540871.1| - 2.4e-06 26.5 0.1 3.3e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ceramidase_alk PF04734.13 gi|159041620|ref|YP_001540872.1| - 5.1e-11 41.9 0.0 4.7e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 Neutral/alkaline non-lysosomal ceramidase, N-terminal KH_5 PF13184.6 gi|159041621|ref|YP_001540873.1| - 0.00026 21.0 0.6 0.0006 19.9 0.1 1.8 2 0 0 2 2 2 1 NusA-like KH domain DNA_pol3_delta2 PF13177.6 gi|159041621|ref|YP_001540873.1| - 0.14 11.9 0.4 0.35 10.6 0.4 1.6 1 1 0 1 1 1 0 DNA polymerase III, delta subunit AA_permease_2 PF13520.6 gi|159041622|ref|YP_001540874.1| - 1.1e-37 129.9 39.2 1.4e-37 129.5 39.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|159041622|ref|YP_001540874.1| - 1.4e-35 122.9 26.7 1.4e-35 122.9 26.7 1.7 1 1 0 2 2 2 1 Amino acid permease Spore_permease PF03845.13 gi|159041622|ref|YP_001540874.1| - 7.1e-11 41.5 12.1 7.1e-11 41.5 12.1 2.2 2 1 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.6 gi|159041622|ref|YP_001540874.1| - 0.09 12.9 0.2 0.09 12.9 0.2 3.6 5 0 0 5 5 5 0 C-terminus of AA_permease Brix PF04427.18 gi|159041623|ref|YP_001540875.1| - 0.025 14.7 0.0 0.03 14.4 0.0 1.1 1 0 0 1 1 1 0 Brix domain Ribosomal_L30 PF00327.20 gi|159041624|ref|YP_001540876.1| - 4e-13 49.0 0.0 9.2e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e HTH_5 PF01022.20 gi|159041625|ref|YP_001540877.1| - 6.8e-06 25.8 0.0 1.5e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|159041625|ref|YP_001540877.1| - 0.0024 17.7 0.0 0.0077 16.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HxlR PF01638.17 gi|159041625|ref|YP_001540877.1| - 0.0047 16.7 0.0 0.0093 15.8 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|159041625|ref|YP_001540877.1| - 0.0076 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|159041625|ref|YP_001540877.1| - 0.013 15.4 0.0 0.04 13.8 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|159041625|ref|YP_001540877.1| - 0.016 15.2 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|159041625|ref|YP_001540877.1| - 0.04 14.1 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|159041625|ref|YP_001540877.1| - 0.048 13.2 0.0 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|159041625|ref|YP_001540877.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|159041625|ref|YP_001540877.1| - 0.15 12.4 0.0 0.39 11.1 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator Polyketide_cyc PF03364.20 gi|159041626|ref|YP_001540878.1| - 7.4e-05 23.0 0.0 8.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|159041626|ref|YP_001540878.1| - 0.029 14.7 0.0 0.04 14.2 0.0 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport OrfB_Zn_ribbon PF07282.11 gi|159041628|ref|YP_001540880.1| - 3.6e-23 81.3 0.2 7.9e-23 80.2 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|159041628|ref|YP_001540880.1| - 0.047 13.7 1.9 0.11 12.5 1.9 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|159041628|ref|YP_001540880.1| - 0.048 13.4 2.4 6.2 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.22 gi|159041628|ref|YP_001540880.1| - 0.053 13.4 0.7 0.1 12.5 0.7 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.6 gi|159041628|ref|YP_001540880.1| - 0.1 11.9 1.0 0.2 11.0 1.0 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger DZR PF12773.7 gi|159041628|ref|YP_001540880.1| - 0.11 12.5 0.6 0.21 11.6 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon N6_Mtase PF02384.16 gi|159041629|ref|YP_001540881.1| - 6.5e-09 35.5 0.0 0.00011 21.6 0.0 2.3 2 0 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.18 gi|159041629|ref|YP_001540881.1| - 0.01 15.5 0.0 0.33 10.6 0.0 2.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 TaqI_C PF12950.7 gi|159041629|ref|YP_001540881.1| - 0.063 13.4 0.5 3.7 7.6 0.5 2.5 2 0 0 2 2 2 0 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|159041629|ref|YP_001540881.1| - 0.1 13.1 0.0 0.33 11.5 0.0 1.9 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Lon_2 PF13337.6 gi|159041630|ref|YP_001540882.1| - 3.6e-147 490.6 0.0 4.1e-147 490.4 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Zn_Tnp_IS1595 PF12760.7 gi|159041631|ref|YP_001540883.1| - 0.00032 20.6 3.7 0.1 12.6 0.2 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|159041631|ref|YP_001540883.1| - 0.00062 20.1 3.0 0.17 12.4 0.3 2.2 2 0 0 2 2 2 2 Zinc-finger double domain zinc_ribbon_4 PF13717.6 gi|159041631|ref|YP_001540883.1| - 0.0019 18.1 0.4 1.6 8.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|159041631|ref|YP_001540883.1| - 0.0037 17.6 0.1 0.0042 17.4 0.1 1.3 1 0 0 1 1 1 1 DnaJ central domain Mu-like_Com PF10122.9 gi|159041631|ref|YP_001540883.1| - 0.0074 15.7 0.3 1.6 8.3 0.0 2.1 2 0 0 2 2 2 1 Mu-like prophage protein Com TRAF6_Z2 PF18048.1 gi|159041631|ref|YP_001540883.1| - 0.011 15.8 0.1 2.5 8.3 0.0 2.3 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zf-ribbon_3 PF13248.6 gi|159041631|ref|YP_001540883.1| - 0.012 15.0 4.9 0.046 13.1 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PADR1 PF08063.12 gi|159041631|ref|YP_001540883.1| - 0.017 14.9 1.1 3.6 7.5 0.1 2.2 2 0 0 2 2 2 0 PADR1 (NUC008) domain zf-C2H2_4 PF13894.6 gi|159041631|ref|YP_001540883.1| - 0.017 15.9 1.7 4.5 8.4 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Anti-TRAP PF15777.5 gi|159041631|ref|YP_001540883.1| - 0.025 14.5 0.1 0.59 10.1 0.0 2.1 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein TFIIS_C PF01096.18 gi|159041631|ref|YP_001540883.1| - 0.03 14.2 0.9 5.7 6.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|159041631|ref|YP_001540883.1| - 0.038 14.1 0.4 0.038 14.1 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ZPR1 PF03367.13 gi|159041631|ref|YP_001540883.1| - 0.073 12.9 0.1 0.084 12.7 0.1 1.1 1 0 0 1 1 1 0 ZPR1 zinc-finger domain CpXC PF14353.6 gi|159041631|ref|YP_001540883.1| - 0.073 13.1 1.3 6.1 6.9 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 gi|159041631|ref|YP_001540883.1| - 0.12 12.2 5.7 0.27 11.0 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|159041631|ref|YP_001540883.1| - 0.26 11.8 3.5 12 6.6 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|159041631|ref|YP_001540883.1| - 0.4 10.6 5.6 0.53 10.3 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-TFIIB PF13453.6 gi|159041631|ref|YP_001540883.1| - 0.41 10.0 4.3 2.8 7.4 4.3 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger Prim_Zn_Ribbon PF08273.12 gi|159041631|ref|YP_001540883.1| - 0.88 9.9 7.8 0.73 10.2 1.1 2.4 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase Neurensin PF14927.6 gi|159041632|ref|YP_001540884.1| - 0.38 10.5 3.6 0.6 9.8 3.6 1.3 1 1 0 1 1 1 0 Neurensin SAM_adeno_trans PF01887.16 gi|159041634|ref|YP_001540886.1| - 1.2e-82 276.9 0.1 1.3e-82 276.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase TIR PF01582.20 gi|159041634|ref|YP_001540886.1| - 0.081 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 TIR domain DNA_binding_1 PF01035.20 gi|159041635|ref|YP_001540887.1| - 1.6e-18 66.6 0.0 2.4e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain ThiS PF02597.20 gi|159041636|ref|YP_001540888.1| - 3.6e-12 46.7 0.0 4.2e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|159041636|ref|YP_001540888.1| - 3.4e-11 43.3 0.0 4.2e-11 43.1 0.0 1.2 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TOM6p PF15184.6 gi|159041636|ref|YP_001540888.1| - 0.055 13.3 0.1 0.072 12.9 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit TOM6 homolog POR_N PF01855.19 gi|159041638|ref|YP_001540890.1| - 4.8e-63 213.0 0.0 7.7e-63 212.3 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|159041638|ref|YP_001540890.1| - 8.3e-30 104.2 0.4 4.4e-29 101.8 0.3 2.2 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|159041638|ref|YP_001540890.1| - 3.4e-11 43.3 0.0 4.6e-09 36.5 0.0 2.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|159041638|ref|YP_001540890.1| - 7.2e-09 35.6 0.0 2.1e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|159041638|ref|YP_001540890.1| - 0.00035 20.2 0.9 0.0011 18.6 0.8 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF3574 PF12098.8 gi|159041638|ref|YP_001540890.1| - 0.038 13.8 0.0 0.088 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3574) DUF3658 PF12395.8 gi|159041638|ref|YP_001540890.1| - 0.12 12.3 0.1 0.3 11.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function SBDS_C PF09377.10 gi|159041638|ref|YP_001540890.1| - 0.13 12.2 0.4 1.7 8.7 0.0 2.7 2 2 0 2 2 2 0 SBDS protein C-terminal domain TPP_enzyme_C PF02775.21 gi|159041639|ref|YP_001540891.1| - 5.9e-32 110.6 0.0 1.3e-31 109.4 0.0 1.6 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|159041639|ref|YP_001540891.1| - 4.8e-25 87.5 0.3 9.2e-25 86.6 0.3 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lactamase_B_3 PF13483.6 gi|159041640|ref|YP_001540892.1| - 5.1e-28 98.0 0.0 6.6e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|159041640|ref|YP_001540892.1| - 5.9e-26 91.2 0.0 7.9e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|159041640|ref|YP_001540892.1| - 1.3e-09 38.4 0.4 2.8e-09 37.3 0.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|159041640|ref|YP_001540892.1| - 0.055 13.0 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily PALP PF00291.25 gi|159041641|ref|YP_001540893.1| - 1.2e-57 195.6 0.0 1.4e-57 195.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Zn-ribbon_8 PF09723.10 gi|159041641|ref|YP_001540893.1| - 0.0035 17.4 0.5 0.0068 16.5 0.5 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|159041641|ref|YP_001540893.1| - 0.0096 15.9 0.1 0.018 15.1 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|159041641|ref|YP_001540893.1| - 0.016 14.9 2.1 0.03 14.0 2.1 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain Mu-like_Com PF10122.9 gi|159041641|ref|YP_001540893.1| - 0.023 14.1 5.9 0.72 9.3 1.1 2.4 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-Mss51 PF13824.6 gi|159041641|ref|YP_001540893.1| - 0.048 13.8 3.7 0.63 10.2 0.2 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|159041641|ref|YP_001540893.1| - 0.05 13.5 2.5 2.6 8.0 0.3 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.6 gi|159041641|ref|YP_001540893.1| - 0.05 13.0 4.9 1.2 8.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|159041641|ref|YP_001540893.1| - 0.058 13.3 0.4 0.11 12.4 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.6 gi|159041641|ref|YP_001540893.1| - 0.071 12.5 0.5 3.9 6.9 0.1 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|159041641|ref|YP_001540893.1| - 0.073 12.7 0.9 10 5.8 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|159041641|ref|YP_001540893.1| - 0.082 12.9 0.4 0.14 12.2 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|159041641|ref|YP_001540893.1| - 0.1 12.7 2.8 2.5 8.3 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|159041641|ref|YP_001540893.1| - 0.13 12.2 0.5 0.28 11.2 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.19 gi|159041641|ref|YP_001540893.1| - 0.21 11.4 2.3 4.9 7.0 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.11 gi|159041641|ref|YP_001540893.1| - 0.32 10.7 1.8 2.9 7.6 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|159041641|ref|YP_001540893.1| - 0.37 10.9 3.4 4 7.6 0.7 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|159041641|ref|YP_001540893.1| - 0.37 10.6 7.1 2.3 8.0 6.8 2.1 1 1 2 3 3 3 0 zinc-ribbon domain CpXC PF14353.6 gi|159041641|ref|YP_001540893.1| - 0.45 10.6 1.9 13 5.9 0.3 2.3 1 1 1 2 2 2 0 CpXC protein zf-C2H2 PF00096.26 gi|159041641|ref|YP_001540893.1| - 1.4 9.6 2.9 8.7 7.0 0.5 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|159041641|ref|YP_001540893.1| - 3.1 7.4 7.1 8.7 5.9 0.7 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|159041641|ref|YP_001540893.1| - 4.7 7.4 5.4 34 4.7 0.1 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-CDGSH PF09360.10 gi|159041642|ref|YP_001540894.1| - 9.9e-09 35.3 0.1 1.9e-08 34.4 0.1 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type DUF3311 PF11755.8 gi|159041643|ref|YP_001540895.1| - 9.1e-12 44.7 11.4 1.2e-11 44.4 11.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4212 PF13937.6 gi|159041643|ref|YP_001540895.1| - 0.024 15.0 6.5 0.031 14.6 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) DUF4064 PF13273.6 gi|159041643|ref|YP_001540895.1| - 0.27 11.5 5.7 11 6.4 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) ATP1G1_PLM_MAT8 PF02038.16 gi|159041643|ref|YP_001540895.1| - 1.6 8.3 9.5 11 5.6 5.8 2.3 2 1 0 2 2 2 0 ATP1G1/PLM/MAT8 family SSF PF00474.17 gi|159041644|ref|YP_001540896.1| - 6.7e-12 45.0 32.7 6.7e-12 45.0 32.7 1.8 1 1 1 2 2 2 1 Sodium:solute symporter family RIC3 PF15361.6 gi|159041644|ref|YP_001540896.1| - 0.074 13.4 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 UPF0051 PF01458.17 gi|159041645|ref|YP_001540897.1| - 2.2e-65 220.4 0.1 2.8e-65 220.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) SGL PF08450.12 gi|159041645|ref|YP_001540897.1| - 0.039 13.5 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 SMP-30/Gluconolactonase/LRE-like region MttA_Hcf106 PF02416.16 gi|159041646|ref|YP_001540898.1| - 1.8e-12 46.4 5.8 4e-12 45.3 5.8 1.8 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|159041646|ref|YP_001540898.1| - 0.00025 22.0 0.3 0.00032 21.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4834) kleA_kleC PF17383.2 gi|159041646|ref|YP_001540898.1| - 0.00059 20.1 0.9 0.00091 19.5 0.9 1.3 1 0 0 1 1 1 1 Uncharacterized KorC regulated protein A HrpB7 PF09486.10 gi|159041646|ref|YP_001540898.1| - 0.00065 20.1 0.6 0.00074 19.9 0.6 1.1 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) HemX PF04375.14 gi|159041646|ref|YP_001540898.1| - 0.0018 17.7 0.4 0.0018 17.6 0.4 1.0 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase MAD PF05557.13 gi|159041646|ref|YP_001540898.1| - 0.0019 16.7 7.2 0.0021 16.5 7.2 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein UPF0242 PF06785.11 gi|159041646|ref|YP_001540898.1| - 0.0027 17.8 1.2 0.003 17.7 1.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 gi|159041646|ref|YP_001540898.1| - 0.0035 16.3 6.7 0.0042 16.0 6.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein CHD5 PF04420.14 gi|159041646|ref|YP_001540898.1| - 0.0039 17.1 1.4 0.0066 16.3 1.4 1.3 1 1 0 1 1 1 1 CHD5-like protein DUF3450 PF11932.8 gi|159041646|ref|YP_001540898.1| - 0.0067 15.8 4.1 0.0073 15.6 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) AAA_13 PF13166.6 gi|159041646|ref|YP_001540898.1| - 0.0074 15.0 4.4 0.0085 14.8 4.4 1.0 1 0 0 1 1 1 1 AAA domain Uds1 PF15456.6 gi|159041646|ref|YP_001540898.1| - 0.0093 16.1 4.8 0.011 15.9 4.8 1.2 1 0 0 1 1 1 1 Up-regulated During Septation Fib_alpha PF08702.10 gi|159041646|ref|YP_001540898.1| - 0.014 15.6 2.8 0.019 15.1 2.8 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF641 PF04859.12 gi|159041646|ref|YP_001540898.1| - 0.014 15.7 3.8 0.018 15.4 3.8 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) BLOC1_2 PF10046.9 gi|159041646|ref|YP_001540898.1| - 0.016 15.5 5.1 0.036 14.4 5.1 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|159041646|ref|YP_001540898.1| - 0.017 15.4 0.0 0.022 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF16 PF01519.16 gi|159041646|ref|YP_001540898.1| - 0.017 15.6 5.4 0.02 15.4 5.4 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 SOGA PF11365.8 gi|159041646|ref|YP_001540898.1| - 0.029 15.5 6.2 0.036 15.2 6.2 1.1 1 0 0 1 1 1 0 Protein SOGA Seryl_tRNA_N PF02403.22 gi|159041646|ref|YP_001540898.1| - 0.03 14.6 8.1 0.035 14.3 8.1 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|159041646|ref|YP_001540898.1| - 0.053 13.6 1.5 0.07 13.2 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF724 PF05266.14 gi|159041646|ref|YP_001540898.1| - 0.059 13.2 6.6 0.068 13.0 6.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) PEARLI-4 PF05278.12 gi|159041646|ref|YP_001540898.1| - 0.062 12.9 5.1 0.075 12.6 5.1 1.0 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) MPS2 PF17060.5 gi|159041646|ref|YP_001540898.1| - 0.063 12.5 5.3 0.07 12.4 5.3 1.1 1 0 0 1 1 1 0 Monopolar spindle protein 2 Atg14 PF10186.9 gi|159041646|ref|YP_001540898.1| - 0.09 11.8 7.3 0.096 11.8 7.3 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4200 PF13863.6 gi|159041646|ref|YP_001540898.1| - 0.092 13.1 11.0 0.77 10.2 11.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DUF5082 PF16888.5 gi|159041646|ref|YP_001540898.1| - 0.096 13.0 11.5 1.7 8.9 4.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) OmpH PF03938.14 gi|159041646|ref|YP_001540898.1| - 0.1 12.9 8.7 0.11 12.8 8.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Csm1_N PF18504.1 gi|159041646|ref|YP_001540898.1| - 0.1 12.9 9.6 0.076 13.4 8.0 1.6 1 1 1 2 2 2 0 Csm1 N-terminal domain DUF4795 PF16043.5 gi|159041646|ref|YP_001540898.1| - 0.11 12.1 7.5 0.13 11.9 7.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) TMPIT PF07851.13 gi|159041646|ref|YP_001540898.1| - 0.12 11.7 1.8 0.12 11.5 1.8 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF2203 PF09969.9 gi|159041646|ref|YP_001540898.1| - 0.12 13.1 2.8 0.14 12.9 2.8 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|159041646|ref|YP_001540898.1| - 0.2 9.6 3.4 0.21 9.5 3.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|159041646|ref|YP_001540898.1| - 0.23 11.9 6.6 0.11 12.9 3.5 1.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF5320 PF17253.2 gi|159041646|ref|YP_001540898.1| - 0.25 12.4 1.2 0.3 12.2 1.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5320) TMF_DNA_bd PF12329.8 gi|159041646|ref|YP_001540898.1| - 0.25 11.4 13.1 0.32 11.0 13.1 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|159041646|ref|YP_001540898.1| - 0.26 11.9 7.6 0.22 12.2 4.8 1.9 1 1 1 2 2 2 0 SlyX DUF3552 PF12072.8 gi|159041646|ref|YP_001540898.1| - 0.41 10.0 12.5 0.6 9.5 12.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF4140 PF13600.6 gi|159041646|ref|YP_001540898.1| - 0.52 10.8 8.3 1.7 9.1 8.3 1.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DPM3 PF08285.11 gi|159041646|ref|YP_001540898.1| - 0.85 9.9 3.2 0.37 11.0 0.6 1.7 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF4407 PF14362.6 gi|159041646|ref|YP_001540898.1| - 1.3 8.3 7.3 0.55 9.5 5.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DivIC PF04977.15 gi|159041646|ref|YP_001540898.1| - 1.5 8.6 10.9 1.4 8.8 7.6 2.1 1 1 0 1 1 1 0 Septum formation initiator TSC22 PF01166.18 gi|159041646|ref|YP_001540898.1| - 9.3 6.6 10.0 1.1 9.6 4.7 2.0 1 1 1 2 2 2 0 TSC-22/dip/bun family Metallophos PF00149.28 gi|159041647|ref|YP_001540899.1| - 4.7e-12 46.8 0.9 9.6e-12 45.8 0.4 1.8 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|159041647|ref|YP_001540899.1| - 1.9e-10 41.2 0.0 1e-09 38.8 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain EF-hand_8 PF13833.6 gi|159041647|ref|YP_001540899.1| - 0.086 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair AAA_23 PF13476.6 gi|159041648|ref|YP_001540900.1| - 1.4e-21 77.9 3.3 1.4e-21 77.9 3.3 5.8 1 1 2 3 3 2 1 AAA domain SMC_N PF02463.19 gi|159041648|ref|YP_001540900.1| - 4.8e-17 62.1 21.1 7.8e-08 32.0 17.5 2.6 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad50_zn_hook PF04423.14 gi|159041648|ref|YP_001540900.1| - 1.9e-11 43.6 5.5 1.9e-11 43.6 5.5 6.9 9 1 1 10 10 5 1 Rad50 zinc hook motif AAA_15 PF13175.6 gi|159041648|ref|YP_001540900.1| - 2.9e-10 40.4 40.5 2e-06 27.8 7.6 4.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|159041648|ref|YP_001540900.1| - 8.6e-09 34.6 62.7 3.2e-05 22.8 22.5 5.2 2 1 2 4 4 4 2 AAA domain NPV_P10 PF05531.12 gi|159041648|ref|YP_001540900.1| - 4.3e-08 33.5 24.9 0.061 13.8 0.4 7.7 4 2 3 8 8 8 2 Nucleopolyhedrovirus P10 protein AAA_21 PF13304.6 gi|159041648|ref|YP_001540900.1| - 2e-07 31.1 21.2 1.3e-05 25.2 7.5 3.9 3 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4407 PF14362.6 gi|159041648|ref|YP_001540900.1| - 3e-06 26.8 38.6 0.00061 19.2 11.5 3.7 1 1 2 3 3 3 3 Domain of unknown function (DUF4407) Phage_GP20 PF06810.11 gi|159041648|ref|YP_001540900.1| - 9.9e-06 25.4 52.1 0.02 14.7 7.3 7.1 2 2 5 7 7 7 3 Phage minor structural protein GP20 AAA_29 PF13555.6 gi|159041648|ref|YP_001540900.1| - 1.2e-05 24.9 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|159041648|ref|YP_001540900.1| - 4.5e-05 22.5 10.7 4.5e-05 22.5 10.7 4.9 1 1 3 4 4 4 2 Spc7 kinetochore protein Baculo_PEP_C PF04513.12 gi|159041648|ref|YP_001540900.1| - 0.00015 21.8 29.4 0.52 10.4 2.4 6.6 3 2 2 6 6 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus APG6_N PF17675.1 gi|159041648|ref|YP_001540900.1| - 0.0003 21.3 12.3 0.0003 21.3 12.3 6.9 1 1 5 6 6 6 1 Apg6 coiled-coil region DUF3584 PF12128.8 gi|159041648|ref|YP_001540900.1| - 0.00036 18.2 69.5 0.053 11.1 3.2 4.3 2 1 2 4 4 4 2 Protein of unknown function (DUF3584) Rx_N PF18052.1 gi|159041648|ref|YP_001540900.1| - 0.00084 19.6 3.9 0.00084 19.6 3.9 8.1 3 2 5 8 8 8 2 Rx N-terminal domain ABC_tran PF00005.27 gi|159041648|ref|YP_001540900.1| - 0.0011 19.5 20.9 0.16 12.5 0.0 5.3 3 2 0 3 3 2 2 ABC transporter ADIP PF11559.8 gi|159041648|ref|YP_001540900.1| - 0.0019 18.3 66.9 0.0061 16.6 7.8 4.8 3 1 0 4 4 4 2 Afadin- and alpha -actinin-Binding PKcGMP_CC PF16808.5 gi|159041648|ref|YP_001540900.1| - 0.0048 16.7 5.3 0.0048 16.7 5.3 11.5 9 3 2 11 11 6 1 Coiled-coil N-terminus of cGMP-dependent protein kinase SbcCD_C PF13558.6 gi|159041648|ref|YP_001540900.1| - 0.0052 17.0 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Snapin_Pallidin PF14712.6 gi|159041648|ref|YP_001540900.1| - 0.0054 17.1 2.6 0.0054 17.1 2.6 8.5 2 2 5 9 9 8 1 Snapin/Pallidin DUF4200 PF13863.6 gi|159041648|ref|YP_001540900.1| - 0.0058 17.0 13.8 0.0058 17.0 13.8 6.7 2 2 4 6 6 6 1 Domain of unknown function (DUF4200) TMF_TATA_bd PF12325.8 gi|159041648|ref|YP_001540900.1| - 0.013 15.7 11.7 0.013 15.7 11.7 7.3 1 1 7 8 8 8 0 TATA element modulatory factor 1 TATA binding SesA PF17107.5 gi|159041648|ref|YP_001540900.1| - 0.016 15.4 1.7 0.016 15.4 1.7 5.4 3 2 3 6 6 5 0 N-terminal domain on NACHT_NTPase and P-loop NTPases MscS_porin PF12795.7 gi|159041648|ref|YP_001540900.1| - 0.017 14.7 60.8 0.1 12.1 5.7 4.8 2 2 2 4 4 4 0 Mechanosensitive ion channel porin domain AAA_27 PF13514.6 gi|159041648|ref|YP_001540900.1| - 0.039 13.5 0.0 0.039 13.5 0.0 4.2 5 2 1 6 6 5 0 AAA domain DUF948 PF06103.11 gi|159041648|ref|YP_001540900.1| - 0.041 14.1 19.7 14 6.0 0.4 6.7 5 2 0 5 5 5 0 Bacterial protein of unknown function (DUF948) Fez1 PF06818.15 gi|159041648|ref|YP_001540900.1| - 0.056 13.9 78.3 0.66 10.4 8.3 5.4 1 1 4 5 5 5 0 Fez1 AAA_25 PF13481.6 gi|159041648|ref|YP_001540900.1| - 0.16 11.5 0.0 0.16 11.5 0.0 4.6 4 1 0 4 4 4 0 AAA domain DUF3800 PF12686.7 gi|159041648|ref|YP_001540900.1| - 0.17 12.5 0.1 26 5.5 0.0 3.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) HOOK PF05622.12 gi|159041648|ref|YP_001540900.1| - 0.21 9.7 84.8 0.12 10.6 23.2 2.2 1 1 1 2 2 2 0 HOOK protein Fib_alpha PF08702.10 gi|159041648|ref|YP_001540900.1| - 0.34 11.1 52.6 0.11 12.7 8.7 6.3 1 1 6 7 7 7 0 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.20 gi|159041648|ref|YP_001540900.1| - 0.35 10.9 84.0 0.096 12.7 13.5 9.2 1 1 6 8 8 8 0 Prefoldin subunit Laminin_II PF06009.12 gi|159041648|ref|YP_001540900.1| - 0.39 10.7 57.7 0.028 14.4 5.8 6.9 2 2 4 6 6 6 0 Laminin Domain II MAD PF05557.13 gi|159041648|ref|YP_001540900.1| - 0.4 9.0 87.5 0.085 11.2 9.2 3.8 1 1 2 3 3 2 0 Mitotic checkpoint protein DUF1664 PF07889.12 gi|159041648|ref|YP_001540900.1| - 0.47 10.5 47.5 0.23 11.5 3.7 6.9 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) HemX PF04375.14 gi|159041648|ref|YP_001540900.1| - 0.54 9.5 36.5 1.5 8.0 2.0 5.3 2 2 3 6 6 6 0 HemX, putative uroporphyrinogen-III C-methyltransferase AAA PF00004.29 gi|159041648|ref|YP_001540900.1| - 0.67 10.4 0.0 0.67 10.4 0.0 4.3 5 2 1 6 6 1 0 ATPase family associated with various cellular activities (AAA) TPR_MLP1_2 PF07926.12 gi|159041648|ref|YP_001540900.1| - 0.8 9.8 76.6 0.7 10.0 14.6 6.5 2 2 4 6 6 6 0 TPR/MLP1/MLP2-like protein LOH1CR12 PF10158.9 gi|159041648|ref|YP_001540900.1| - 0.9 9.6 19.6 2.1 8.3 0.8 5.1 3 2 3 6 6 5 0 Tumour suppressor protein EzrA PF06160.12 gi|159041648|ref|YP_001540900.1| - 1 7.4 64.5 4.3 5.4 16.4 3.9 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA ATG16 PF08614.11 gi|159041648|ref|YP_001540900.1| - 1.1 9.4 98.7 0.033 14.4 4.5 6.8 2 1 4 6 6 4 0 Autophagy protein 16 (ATG16) DASH_Dam1 PF08653.10 gi|159041648|ref|YP_001540900.1| - 1.2 9.0 18.8 7.3 6.5 0.0 7.4 7 2 1 8 8 8 0 DASH complex subunit Dam1 GAS PF13851.6 gi|159041648|ref|YP_001540900.1| - 1.9 7.8 89.1 0.12 11.7 8.0 6.7 2 2 5 7 7 7 0 Growth-arrest specific micro-tubule binding Golgin_A5 PF09787.9 gi|159041648|ref|YP_001540900.1| - 2.1 7.8 81.2 0.64 9.4 20.6 4.6 1 1 3 4 4 4 0 Golgin subfamily A member 5 IFT57 PF10498.9 gi|159041648|ref|YP_001540900.1| - 2.3 7.1 61.0 0.35 9.8 11.7 4.5 1 1 4 5 5 5 0 Intra-flagellar transport protein 57 FlxA PF14282.6 gi|159041648|ref|YP_001540900.1| - 2.8 8.0 30.3 5.7 7.0 1.9 6.4 2 2 3 8 8 7 0 FlxA-like protein DUF2203 PF09969.9 gi|159041648|ref|YP_001540900.1| - 3.4 8.4 54.7 0.63 10.8 1.8 6.9 1 1 6 8 8 8 0 Uncharacterized conserved protein (DUF2203) CALCOCO1 PF07888.11 gi|159041648|ref|YP_001540900.1| - 3.8 6.3 97.2 0.026 13.4 28.3 4.6 2 2 2 4 4 4 0 Calcium binding and coiled-coil domain (CALCOCO1) like Occludin_ELL PF07303.13 gi|159041648|ref|YP_001540900.1| - 4 8.2 43.3 1.3 9.8 0.6 6.6 2 2 4 6 6 6 0 Occludin homology domain DUF5082 PF16888.5 gi|159041648|ref|YP_001540900.1| - 5.2 7.4 48.9 0.15 12.3 2.2 6.9 3 3 3 6 6 6 0 Domain of unknown function (DUF5082) DUF16 PF01519.16 gi|159041648|ref|YP_001540900.1| - 7.8 7.0 54.2 0.21 12.1 1.7 7.5 1 1 4 6 6 5 0 Protein of unknown function DUF16 FapA PF03961.13 gi|159041648|ref|YP_001540900.1| - 8.9 4.8 77.8 0.33 9.5 5.9 5.9 1 1 5 6 6 6 0 Flagellar Assembly Protein A CENP-F_leu_zip PF10473.9 gi|159041648|ref|YP_001540900.1| - 9.8 6.2 103.7 0.39 10.7 11.5 6.0 1 1 5 6 6 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPP_enzyme_C PF02775.21 gi|159041649|ref|YP_001540901.1| - 4.4e-24 85.0 0.3 1.1e-23 83.7 0.3 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 gi|159041649|ref|YP_001540901.1| - 2.5e-11 42.9 11.5 7.8e-08 31.8 4.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain POR_N PF01855.19 gi|159041649|ref|YP_001540901.1| - 8e-11 42.1 0.7 1.7e-10 41.1 0.1 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_2 PF12797.7 gi|159041649|ref|YP_001540901.1| - 2e-09 36.9 14.1 1.6e-05 24.7 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|159041649|ref|YP_001540901.1| - 7.1e-09 35.4 15.9 3.1e-05 23.9 4.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|159041649|ref|YP_001540901.1| - 1.5e-08 34.4 0.8 0.0056 16.3 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_21 PF14697.6 gi|159041649|ref|YP_001540901.1| - 1.3e-05 25.3 9.7 2.7e-05 24.2 9.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Transketolase_C PF02780.20 gi|159041649|ref|YP_001540901.1| - 4.3e-05 23.4 0.1 0.0001 22.1 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4_10 PF13237.6 gi|159041649|ref|YP_001540901.1| - 0.00013 22.0 13.0 0.0031 17.6 2.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041649|ref|YP_001540901.1| - 0.00018 22.0 12.1 0.023 15.3 13.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159041649|ref|YP_001540901.1| - 0.0023 18.8 2.2 0.0023 18.8 2.2 2.6 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|159041649|ref|YP_001540901.1| - 0.0035 17.5 11.5 0.016 15.4 11.6 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 gi|159041649|ref|YP_001540901.1| - 0.0046 16.2 0.1 0.034 13.4 0.1 2.0 1 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_15 PF13459.6 gi|159041649|ref|YP_001540901.1| - 0.0072 17.0 3.9 0.88 10.4 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain PFOR_II PF17147.4 gi|159041649|ref|YP_001540901.1| - 0.047 14.0 0.1 0.21 11.9 0.1 2.1 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_4 PF12800.7 gi|159041649|ref|YP_001540901.1| - 1.3 9.7 13.3 0.8 10.4 4.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|159041649|ref|YP_001540901.1| - 1.3 9.6 10.6 0.31 11.6 1.9 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159041649|ref|YP_001540901.1| - 2 9.0 13.3 4 8.1 2.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|159041650|ref|YP_001540902.1| - 3.7e-35 121.6 0.5 4.3e-35 121.4 0.5 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MFS_1 PF07690.16 gi|159041651|ref|YP_001540903.1| - 1.6e-28 99.6 100.1 1.8e-27 96.2 59.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159041651|ref|YP_001540903.1| - 5.3e-27 94.8 40.9 1.8e-22 79.8 14.8 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter Herpes_LAMP2 PF06126.11 gi|159041651|ref|YP_001540903.1| - 0.0035 16.0 4.7 0.082 11.5 0.4 2.2 2 0 0 2 2 2 2 Herpesvirus Latent membrane protein 2 AAA_5 PF07728.14 gi|159041652|ref|YP_001540904.1| - 4.9e-27 94.6 0.0 9.7e-27 93.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|159041652|ref|YP_001540904.1| - 1.2e-05 25.8 0.0 4.9e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|159041652|ref|YP_001540904.1| - 0.00021 21.2 0.0 0.00039 20.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|159041652|ref|YP_001540904.1| - 0.0086 16.5 0.1 0.022 15.1 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain DUF4363 PF14276.6 gi|159041652|ref|YP_001540904.1| - 0.023 14.8 0.9 0.066 13.3 0.9 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) Rad17 PF03215.15 gi|159041652|ref|YP_001540904.1| - 0.026 14.4 0.0 0.063 13.2 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|159041652|ref|YP_001540904.1| - 0.029 14.1 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|159041652|ref|YP_001540904.1| - 0.041 13.6 0.0 0.1 12.4 0.0 1.7 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 gi|159041652|ref|YP_001540904.1| - 0.048 13.5 0.2 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|159041652|ref|YP_001540904.1| - 0.057 12.5 0.0 0.14 11.2 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|159041652|ref|YP_001540904.1| - 0.077 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|159041652|ref|YP_001540904.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|159041652|ref|YP_001540904.1| - 0.14 11.9 0.0 0.67 9.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|159041652|ref|YP_001540904.1| - 0.25 11.6 1.9 2.4 8.5 0.3 3.0 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|159041652|ref|YP_001540904.1| - 0.27 11.5 0.6 1.3 9.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain PhoU PF01895.19 gi|159041652|ref|YP_001540904.1| - 1.8 9.1 6.1 0.67 10.5 1.1 2.9 4 1 1 5 5 3 0 PhoU domain VWA_2 PF13519.6 gi|159041653|ref|YP_001540905.1| - 5.5e-05 23.8 2.4 0.00017 22.2 0.4 2.7 2 2 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|159041653|ref|YP_001540905.1| - 0.00033 20.9 1.5 0.0013 19.0 0.2 2.3 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|159041653|ref|YP_001540905.1| - 0.012 15.1 0.1 0.059 12.8 0.1 2.1 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein DUF5104 PF17117.5 gi|159041653|ref|YP_001540905.1| - 0.035 14.5 0.0 0.12 12.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5104) VMA21 PF09446.10 gi|159041653|ref|YP_001540905.1| - 0.053 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 VMA21-like domain UNC-79 PF14776.6 gi|159041653|ref|YP_001540905.1| - 0.41 9.3 2.0 0.45 9.2 0.2 1.8 2 0 0 2 2 2 0 Cation-channel complex subunit UNC-79 Aminotran_1_2 PF00155.21 gi|159041654|ref|YP_001540906.1| - 2.9e-56 191.2 0.0 3.2e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|159041654|ref|YP_001540906.1| - 1.4e-05 24.6 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|159041654|ref|YP_001540906.1| - 0.00013 20.6 0.1 0.0002 20.0 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|159041654|ref|YP_001540906.1| - 0.00057 18.9 0.0 0.00086 18.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Lambda_CIII PF02061.16 gi|159041654|ref|YP_001540906.1| - 0.31 11.1 1.4 1.2 9.3 0.1 2.4 3 0 0 3 3 3 0 Lambda Phage CIII Amidinotransf PF02274.17 gi|159041655|ref|YP_001540907.1| - 7.8e-45 153.4 0.0 1e-44 153.1 0.0 1.1 1 0 0 1 1 1 1 Amidinotransferase DUF354 PF04007.12 gi|159041656|ref|YP_001540908.1| - 2.2e-45 155.2 0.0 2.5e-45 155.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 gi|159041656|ref|YP_001540908.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase ABC_membrane PF00664.23 gi|159041657|ref|YP_001540909.1| - 2.4e-53 181.5 13.7 3.1e-53 181.2 13.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|159041657|ref|YP_001540909.1| - 1.5e-35 122.7 0.0 3e-35 121.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.11 gi|159041657|ref|YP_001540909.1| - 4e-30 104.3 0.1 9e-30 103.2 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) SMC_N PF02463.19 gi|159041657|ref|YP_001540909.1| - 7.9e-05 22.2 0.0 0.0068 15.9 0.0 2.4 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|159041657|ref|YP_001540909.1| - 0.0011 18.8 0.0 0.26 11.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 gi|159041657|ref|YP_001540909.1| - 0.0045 16.7 0.0 0.0081 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|159041657|ref|YP_001540909.1| - 0.005 17.0 0.1 0.012 15.7 0.1 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|159041657|ref|YP_001540909.1| - 0.01 16.1 0.2 0.074 13.3 0.2 2.2 1 1 0 1 1 1 0 AAA domain KdpD PF02702.17 gi|159041657|ref|YP_001540909.1| - 0.012 15.1 0.2 0.51 9.8 0.2 2.5 1 1 1 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain RsgA_GTPase PF03193.16 gi|159041657|ref|YP_001540909.1| - 0.015 15.2 0.1 0.08 12.8 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|159041657|ref|YP_001540909.1| - 0.016 15.8 0.0 0.036 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|159041657|ref|YP_001540909.1| - 0.017 14.9 0.1 0.044 13.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|159041657|ref|YP_001540909.1| - 0.053 13.6 0.0 0.24 11.5 0.0 2.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|159041657|ref|YP_001540909.1| - 0.071 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain KH_2 PF07650.17 gi|159041657|ref|YP_001540909.1| - 0.088 12.6 0.5 0.26 11.1 0.5 1.8 1 0 0 1 1 1 0 KH domain AAA_5 PF07728.14 gi|159041657|ref|YP_001540909.1| - 0.1 12.6 0.0 0.66 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|159041657|ref|YP_001540909.1| - 0.11 12.9 0.1 0.86 10.0 0.0 2.4 3 0 0 3 3 2 0 RNA helicase DUF2172 PF09940.9 gi|159041657|ref|YP_001540909.1| - 0.16 12.4 0.1 5.4 7.5 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2172) ATP-grasp_5 PF13549.6 gi|159041658|ref|YP_001540910.1| - 4.7e-75 251.9 0.0 5.3e-75 251.7 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|159041658|ref|YP_001540910.1| - 0.00026 20.6 0.0 0.00058 19.5 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|159041658|ref|YP_001540910.1| - 0.0051 16.3 0.1 0.0058 16.1 0.1 1.4 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|159041658|ref|YP_001540910.1| - 0.012 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 gi|159041658|ref|YP_001540910.1| - 0.059 13.1 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Succ_CoA_lig PF13607.6 gi|159041659|ref|YP_001540911.1| - 8.5e-49 164.9 0.7 7.4e-48 161.9 0.1 2.7 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|159041659|ref|YP_001540911.1| - 6.5e-26 91.1 1.5 1.3e-24 86.9 0.6 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|159041659|ref|YP_001540911.1| - 1.8e-15 57.3 0.7 5.1e-15 55.9 0.7 1.8 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|159041659|ref|YP_001540911.1| - 0.0016 18.4 0.1 0.004 17.1 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF442 PF04273.13 gi|159041659|ref|YP_001540911.1| - 0.053 13.6 0.0 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Putative phosphatase (DUF442) VIT1 PF01988.19 gi|159041660|ref|YP_001540912.1| - 1.1e-40 139.9 11.7 1.6e-40 139.3 11.7 1.3 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|159041660|ref|YP_001540912.1| - 0.00074 19.9 0.7 0.0017 18.8 0.7 1.6 1 0 0 1 1 1 1 Rubrerythrin DoxX_2 PF13564.6 gi|159041660|ref|YP_001540912.1| - 0.011 15.9 15.2 2.2 8.4 0.0 3.5 3 1 0 3 3 3 0 DoxX-like family DUF4781 PF16013.5 gi|159041660|ref|YP_001540912.1| - 0.024 13.4 0.1 0.024 13.4 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4781) DUF2207 PF09972.9 gi|159041660|ref|YP_001540912.1| - 0.037 12.8 7.0 1.5 7.5 7.0 2.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3042 PF11240.8 gi|159041660|ref|YP_001540912.1| - 6.6 6.8 10.6 0.5 10.4 0.9 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) Lactamase_B PF00753.27 gi|159041662|ref|YP_001540914.1| - 3.3e-09 37.0 0.0 5e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily NAD_binding_2 PF03446.15 gi|159041663|ref|YP_001540915.1| - 4.6e-35 121.1 0.9 7.7e-35 120.4 0.9 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|159041663|ref|YP_001540915.1| - 8.9e-30 103.4 0.2 1.3e-29 102.9 0.2 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Shikimate_DH PF01488.20 gi|159041663|ref|YP_001540915.1| - 3.5e-07 30.4 0.2 7.7e-07 29.3 0.2 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|159041663|ref|YP_001540915.1| - 1.9e-06 27.5 0.1 3.5e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|159041663|ref|YP_001540915.1| - 5.5e-06 26.9 0.1 1.4e-05 25.6 0.1 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|159041663|ref|YP_001540915.1| - 0.00026 21.8 0.0 0.00046 21.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|159041663|ref|YP_001540915.1| - 0.0004 19.8 0.1 0.00065 19.1 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|159041663|ref|YP_001540915.1| - 0.01 15.7 0.2 0.07 13.0 0.2 2.3 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPP_enzyme_M PF00205.22 gi|159041663|ref|YP_001540915.1| - 0.035 13.9 0.2 0.83 9.4 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain NAD_binding_7 PF13241.6 gi|159041663|ref|YP_001540915.1| - 0.048 14.1 0.2 7.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding NIL PF09383.10 gi|159041663|ref|YP_001540915.1| - 0.14 12.1 0.1 1.4 8.8 0.0 2.6 3 0 0 3 3 3 0 NIL domain Radical_SAM PF04055.21 gi|159041665|ref|YP_001540917.1| - 1.4e-24 87.4 0.0 5.9e-24 85.3 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|159041665|ref|YP_001540917.1| - 2.3e-10 40.8 0.4 1.1e-09 38.6 0.9 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|159041665|ref|YP_001540917.1| - 5.8e-08 33.1 0.1 1.7e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159041665|ref|YP_001540917.1| - 1e-05 25.6 0.0 2.5e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|159041665|ref|YP_001540917.1| - 5.9e-05 22.6 0.0 0.00012 21.6 0.0 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|159041665|ref|YP_001540917.1| - 0.0009 18.9 0.0 0.0022 17.6 0.0 1.6 2 0 0 2 2 2 1 HMGL-like HTH_22 PF13309.6 gi|159041665|ref|YP_001540917.1| - 0.0087 16.1 0.0 0.027 14.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain CENP-B_N PF04218.13 gi|159041665|ref|YP_001540917.1| - 0.11 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain B12-binding PF02310.19 gi|159041666|ref|YP_001540918.1| - 4.8e-29 100.9 0.0 6.6e-28 97.2 0.0 2.3 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|159041666|ref|YP_001540918.1| - 6.3e-26 91.7 0.1 3.3e-25 89.4 0.1 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|159041666|ref|YP_001540918.1| - 0.00033 20.9 0.0 0.001 19.3 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159041666|ref|YP_001540918.1| - 0.022 14.9 0.0 0.05 13.7 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM_N PF08497.10 gi|159041666|ref|YP_001540918.1| - 0.024 13.9 0.1 20 4.3 0.0 3.5 3 1 0 3 3 3 0 Radical SAM N-terminal Peripla_BP_6 PF13458.6 gi|159041666|ref|YP_001540918.1| - 0.061 13.0 0.0 0.18 11.4 0.0 1.7 1 1 0 1 1 1 0 Periplasmic binding protein p450 PF00067.22 gi|159041666|ref|YP_001540918.1| - 0.071 11.8 0.0 0.096 11.4 0.0 1.1 1 0 0 1 1 1 0 Cytochrome P450 Big_3_5 PF16640.5 gi|159041668|ref|YP_001540920.1| - 4.2e-11 42.9 21.9 0.00077 19.6 0.1 6.1 7 0 0 7 7 7 3 Bacterial Ig-like domain (group 3) NUMOD4 PF07463.11 gi|159041668|ref|YP_001540920.1| - 0.15 12.2 2.3 2.7 8.3 0.2 3.2 2 0 0 2 2 2 0 NUMOD4 motif Big_1 PF02369.16 gi|159041668|ref|YP_001540920.1| - 0.77 9.8 4.8 0.35 10.9 0.8 2.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) Filamin PF00630.19 gi|159041668|ref|YP_001540920.1| - 1.1 10.1 3.5 74 4.2 0.1 4.0 2 2 0 2 2 2 0 Filamin/ABP280 repeat S4 PF01479.25 gi|159041669|ref|YP_001540921.1| - 1.2e-16 60.1 0.2 1.2e-16 60.1 0.2 2.6 4 0 0 4 4 4 1 S4 domain CN_hydrolase PF00795.22 gi|159041670|ref|YP_001540922.1| - 6.5e-35 120.7 0.0 8e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Arabinose_Isome PF02610.15 gi|159041672|ref|YP_001540924.1| - 0.18 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 L-arabinose isomerase Spermine_synth PF01564.17 gi|159041673|ref|YP_001540925.1| - 5.9e-48 162.8 0.0 8.6e-48 162.2 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|159041673|ref|YP_001540925.1| - 1.2e-10 41.2 0.1 2.9e-10 39.9 0.0 1.7 2 0 0 2 2 2 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|159041673|ref|YP_001540925.1| - 2.5e-05 24.9 0.0 5.4e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041673|ref|YP_001540925.1| - 5.7e-05 23.0 0.0 0.00013 21.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|159041673|ref|YP_001540925.1| - 0.00042 20.2 0.0 0.00091 19.1 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|159041673|ref|YP_001540925.1| - 0.0016 18.0 0.0 0.0029 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|159041673|ref|YP_001540925.1| - 0.0027 18.4 0.0 0.0085 16.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|159041673|ref|YP_001540925.1| - 0.0036 17.9 0.0 0.0095 16.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|159041673|ref|YP_001540925.1| - 0.018 14.3 0.0 0.031 13.5 0.0 1.4 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain NAD_binding_7 PF13241.6 gi|159041673|ref|YP_001540925.1| - 0.16 12.4 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_synthase PF02540.17 gi|159041674|ref|YP_001540926.1| - 1.2e-79 266.9 0.0 1.4e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|159041674|ref|YP_001540926.1| - 2.4e-07 29.9 0.0 2.3e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|159041674|ref|YP_001540926.1| - 0.00019 21.0 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|159041674|ref|YP_001540926.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|159041674|ref|YP_001540926.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase PhoU PF01895.19 gi|159041675|ref|YP_001540927.1| - 1.5e-11 44.6 3.0 2.5e-08 34.3 0.8 2.7 1 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|159041675|ref|YP_001540927.1| - 1.4e-06 28.1 0.4 3.6e-06 26.8 0.3 1.8 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF1495 PF07381.11 gi|159041676|ref|YP_001540928.1| - 0.011 15.6 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|159041676|ref|YP_001540928.1| - 0.028 14.9 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1922 PF09082.10 gi|159041677|ref|YP_001540929.1| - 1.2e-05 25.5 0.1 1.4e-05 25.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zinc_ribbon_4 PF13717.6 gi|159041677|ref|YP_001540929.1| - 0.00019 21.2 0.4 0.25 11.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|159041677|ref|YP_001540929.1| - 0.0006 19.5 0.9 0.27 11.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|159041677|ref|YP_001540929.1| - 0.0041 16.5 2.1 0.12 11.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|159041677|ref|YP_001540929.1| - 0.0059 16.1 1.2 0.084 12.4 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|159041677|ref|YP_001540929.1| - 0.0094 15.9 4.7 0.14 12.1 0.2 2.7 2 1 0 2 2 2 1 Ogr/Delta-like zinc finger zf-RING_7 PF02591.15 gi|159041677|ref|YP_001540929.1| - 0.016 15.4 1.1 2.1 8.6 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-CSL PF05207.13 gi|159041677|ref|YP_001540929.1| - 0.016 14.9 1.8 2.6 7.9 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger zf-CHCC PF10276.9 gi|159041677|ref|YP_001540929.1| - 0.021 14.9 1.1 0.064 13.3 0.2 1.9 2 0 0 2 2 2 0 Zinc-finger domain zf-Mss51 PF13824.6 gi|159041677|ref|YP_001540929.1| - 0.04 14.0 1.1 0.36 11.0 1.1 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CpXC PF14353.6 gi|159041677|ref|YP_001540929.1| - 0.042 13.9 0.7 0.49 10.5 0.0 2.1 1 1 1 2 2 2 0 CpXC protein HypA PF01155.19 gi|159041677|ref|YP_001540929.1| - 0.046 13.7 0.1 0.054 13.5 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_CPXG PF14255.6 gi|159041677|ref|YP_001540929.1| - 0.069 13.1 1.1 0.7 9.8 0.2 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF1610 PF07754.11 gi|159041677|ref|YP_001540929.1| - 0.071 13.1 1.1 0.3 11.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) YacG PF03884.14 gi|159041677|ref|YP_001540929.1| - 0.21 11.3 3.3 0.52 10.1 3.4 1.6 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG zf-LITAF-like PF10601.9 gi|159041677|ref|YP_001540929.1| - 0.26 11.6 2.6 0.87 9.9 2.6 1.8 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zf-ISL3 PF14690.6 gi|159041677|ref|YP_001540929.1| - 0.34 11.6 4.8 1.7 9.4 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|159041677|ref|YP_001540929.1| - 0.36 10.9 6.5 0.36 10.8 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|159041677|ref|YP_001540929.1| - 0.45 10.8 5.5 6.8 7.0 5.8 2.1 1 1 1 2 2 2 0 zinc-ribbon zf-C2H2_4 PF13894.6 gi|159041677|ref|YP_001540929.1| - 0.6 11.1 4.5 2.4 9.2 0.6 2.3 1 1 1 2 2 2 0 C2H2-type zinc finger zf-Di19 PF05605.12 gi|159041677|ref|YP_001540929.1| - 0.75 10.1 4.0 0.94 9.8 0.3 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.6 gi|159041677|ref|YP_001540929.1| - 0.77 9.6 4.8 1.2 9.0 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|159041677|ref|YP_001540929.1| - 1.8 8.7 5.4 11 6.3 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1 PF03811.13 gi|159041677|ref|YP_001540929.1| - 2.2 8.1 10.8 1e+02 2.7 8.8 2.8 2 1 0 2 2 2 0 InsA N-terminal domain Metallophos_2 PF12850.7 gi|159041678|ref|YP_001540930.1| - 2.5e-24 86.3 0.3 3.3e-24 85.9 0.3 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|159041678|ref|YP_001540930.1| - 0.00018 21.0 0.0 0.0014 18.0 0.0 2.0 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|159041678|ref|YP_001540930.1| - 0.00028 21.5 6.6 0.0077 16.8 0.8 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF5122 PF17164.4 gi|159041678|ref|YP_001540930.1| - 0.038 14.3 0.1 0.57 10.5 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5122) beta-propeller HIM1 PF08732.10 gi|159041678|ref|YP_001540930.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 HIM1 DUF1641 PF07849.11 gi|159041679|ref|YP_001540931.1| - 0.0019 18.0 0.0 0.0053 16.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) COMM_domain PF07258.14 gi|159041679|ref|YP_001540931.1| - 0.018 15.1 3.6 1.6 8.9 0.1 3.5 2 1 1 3 3 3 0 COMM domain PLU-1 PF08429.11 gi|159041679|ref|YP_001540931.1| - 0.082 12.1 0.6 0.1 11.7 0.6 1.1 1 0 0 1 1 1 0 PLU-1-like protein HAD_2 PF13419.6 gi|159041680|ref|YP_001540932.1| - 3.3e-30 105.5 0.0 4.1e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|159041680|ref|YP_001540932.1| - 4.5e-19 69.6 0.1 5.5e-17 62.7 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|159041680|ref|YP_001540932.1| - 2.8e-09 37.6 0.0 4e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|159041680|ref|YP_001540932.1| - 0.00081 19.2 0.0 0.016 15.0 0.0 2.2 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.6 gi|159041680|ref|YP_001540932.1| - 0.0019 18.2 0.0 0.004 17.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|159041680|ref|YP_001540932.1| - 0.073 13.2 0.8 0.93 9.6 0.8 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HTH_45 PF14947.6 gi|159041681|ref|YP_001540933.1| - 0.00027 20.9 0.0 0.00054 19.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|159041681|ref|YP_001540933.1| - 0.076 12.9 0.1 0.21 11.5 0.1 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix LigT_PEase PF02834.16 gi|159041683|ref|YP_001540935.1| - 5.7e-30 103.3 0.0 4.3e-18 65.3 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|159041683|ref|YP_001540935.1| - 9.3e-14 51.6 0.0 1e-13 51.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|159041683|ref|YP_001540935.1| - 7.3e-10 39.1 0.0 4.1e-09 36.6 0.0 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|159041683|ref|YP_001540935.1| - 0.004 16.7 0.0 0.0045 16.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein Corona_NS2A PF05213.12 gi|159041683|ref|YP_001540935.1| - 0.083 12.2 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Coronavirus NS2A protein Rad51 PF08423.11 gi|159041684|ref|YP_001540936.1| - 2e-95 318.9 0.0 2.5e-95 318.6 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|159041684|ref|YP_001540936.1| - 1.5e-12 47.6 0.0 2.4e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|159041684|ref|YP_001540936.1| - 2.2e-09 37.0 0.8 7.9e-09 35.2 0.8 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|159041684|ref|YP_001540936.1| - 9.3e-08 31.9 0.0 1.8e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|159041684|ref|YP_001540936.1| - 4.2e-07 30.5 0.3 2.6e-06 27.9 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_24 PF13479.6 gi|159041684|ref|YP_001540936.1| - 0.00099 18.9 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain BAF PF02961.14 gi|159041684|ref|YP_001540936.1| - 0.0074 16.7 0.0 0.026 15.0 0.0 1.9 2 0 0 2 2 1 1 Barrier to autointegration factor PAXNEB PF05625.11 gi|159041684|ref|YP_001540936.1| - 0.0091 15.2 0.6 0.45 9.6 0.1 2.1 1 1 1 2 2 2 1 PAXNEB protein DnaB_C PF03796.15 gi|159041684|ref|YP_001540936.1| - 0.011 15.1 1.5 2.1 7.6 0.0 2.3 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain DNA_pol_lambd_f PF10391.9 gi|159041684|ref|YP_001540936.1| - 0.019 14.8 0.1 0.12 12.2 0.1 2.4 2 1 0 2 2 2 0 Fingers domain of DNA polymerase lambda AAA_18 PF13238.6 gi|159041684|ref|YP_001540936.1| - 0.041 14.4 0.0 0.14 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|159041684|ref|YP_001540936.1| - 0.055 13.7 0.3 0.51 10.6 0.2 2.4 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|159041684|ref|YP_001540936.1| - 0.11 12.2 0.0 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CBS PF00571.28 gi|159041685|ref|YP_001540937.1| - 5.9e-28 97.1 2.1 9.9e-14 51.5 0.2 2.7 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|159041685|ref|YP_001540937.1| - 3.7e-25 87.4 0.0 1.5e-24 85.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|159041685|ref|YP_001540937.1| - 4.1e-08 33.5 0.0 9.2e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|159041685|ref|YP_001540937.1| - 1.3e-06 28.3 0.0 3.5e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 HTH domain Put_DNA-bind_N PF06971.13 gi|159041685|ref|YP_001540937.1| - 0.0021 18.0 0.0 0.0094 15.9 0.0 2.1 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus HTH_5 PF01022.20 gi|159041685|ref|YP_001540937.1| - 0.0088 15.9 0.1 0.035 14.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PRC PF05239.16 gi|159041685|ref|YP_001540937.1| - 0.016 15.3 0.2 0.19 11.8 0.0 2.6 3 0 0 3 3 3 0 PRC-barrel domain Sigma70_r3 PF04539.16 gi|159041685|ref|YP_001540937.1| - 0.017 15.2 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_IclR PF09339.10 gi|159041685|ref|YP_001540937.1| - 0.024 14.4 0.0 0.069 13.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|159041685|ref|YP_001540937.1| - 0.03 14.3 0.0 0.072 13.1 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|159041685|ref|YP_001540937.1| - 0.037 13.7 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_terminase PF10668.9 gi|159041685|ref|YP_001540937.1| - 0.052 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Phage terminase small subunit HTH_24 PF13412.6 gi|159041685|ref|YP_001540937.1| - 0.054 13.1 0.0 0.19 11.3 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|159041685|ref|YP_001540937.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|159041685|ref|YP_001540937.1| - 0.13 12.2 0.0 0.42 10.5 0.0 1.9 2 0 0 2 2 2 0 MarR family TFIIE_alpha PF02002.17 gi|159041685|ref|YP_001540937.1| - 0.14 12.0 1.1 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit zf-B_box PF00643.24 gi|159041686|ref|YP_001540938.1| - 0.032 14.4 20.1 0.62 10.3 5.7 3.7 3 1 0 3 3 3 0 B-box zinc finger PknG_rubred PF16919.5 gi|159041686|ref|YP_001540938.1| - 0.22 11.7 15.5 1.8 8.7 5.1 2.8 1 1 2 3 3 3 0 Protein kinase G rubredoxin domain TerY_C PF15616.6 gi|159041686|ref|YP_001540938.1| - 0.51 10.5 17.2 0.98 9.5 3.8 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain zf-UDP PF14569.6 gi|159041686|ref|YP_001540938.1| - 0.87 9.7 15.6 0.39 10.9 6.9 2.7 1 1 1 2 2 2 0 Zinc-binding RING-finger C5HCH PF17982.1 gi|159041686|ref|YP_001540938.1| - 0.99 9.6 16.2 10 6.4 5.4 2.9 1 1 1 2 2 2 0 NSD Cys-His rich domain zf-C3HC4_3 PF13920.6 gi|159041686|ref|YP_001540938.1| - 2.5 8.0 26.6 69 3.4 5.1 3.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2180 PF09947.9 gi|159041686|ref|YP_001540938.1| - 3.2 7.8 27.4 0.22 11.5 4.2 3.6 1 1 3 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2180) zf-MYND PF01753.18 gi|159041686|ref|YP_001540938.1| - 8.3 6.6 12.9 6.1 7.0 2.8 3.2 2 2 0 2 2 2 0 MYND finger Porphobil_deam PF01379.20 gi|159041687|ref|YP_001540939.1| - 2.9e-70 235.9 0.1 3.5e-70 235.7 0.1 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|159041687|ref|YP_001540939.1| - 1.2e-11 44.8 0.0 3.5e-11 43.3 0.0 1.8 2 0 0 2 2 2 1 Porphobilinogen deaminase, C-terminal domain Glycos_transf_1 PF00534.20 gi|159041688|ref|YP_001540940.1| - 1e-18 67.4 0.0 1.7e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159041688|ref|YP_001540940.1| - 5e-18 65.8 0.1 8e-18 65.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159041688|ref|YP_001540940.1| - 3.1e-07 30.7 0.1 9.5e-07 29.1 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Pyr_redox_2 PF07992.14 gi|159041689|ref|YP_001540941.1| - 4.9e-64 216.4 1.3 6.1e-64 216.1 1.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159041689|ref|YP_001540941.1| - 6.6e-26 90.7 2.7 1.3e-21 76.9 0.4 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|159041689|ref|YP_001540941.1| - 2.1e-17 63.3 0.2 6.3e-14 51.9 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|159041689|ref|YP_001540941.1| - 1.4e-13 51.0 0.0 5.6e-13 49.1 0.0 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.6 gi|159041689|ref|YP_001540941.1| - 6.5e-11 42.3 1.0 5.1e-05 23.4 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|159041689|ref|YP_001540941.1| - 4.6e-09 36.3 8.5 0.00016 21.4 0.5 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|159041689|ref|YP_001540941.1| - 1.6e-08 34.1 3.0 0.00095 18.5 0.2 3.0 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|159041689|ref|YP_001540941.1| - 3.4e-08 32.6 7.6 0.00042 19.1 0.2 4.2 4 1 1 5 5 5 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|159041689|ref|YP_001540941.1| - 3.4e-07 29.7 4.9 0.0024 17.0 0.3 3.4 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|159041689|ref|YP_001540941.1| - 7.6e-06 25.2 2.2 0.0031 16.6 0.3 2.5 2 0 0 2 2 2 2 Lycopene cyclase protein K_oxygenase PF13434.6 gi|159041689|ref|YP_001540941.1| - 2.7e-05 23.5 0.0 0.003 16.7 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|159041689|ref|YP_001540941.1| - 4.1e-05 23.6 4.7 0.58 10.1 0.1 4.2 4 0 0 4 4 4 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|159041689|ref|YP_001540941.1| - 5.6e-05 22.6 0.0 0.014 14.7 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|159041689|ref|YP_001540941.1| - 0.00013 22.3 0.8 0.52 10.8 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.22 gi|159041689|ref|YP_001540941.1| - 0.00014 21.1 7.7 0.026 13.6 0.2 3.6 4 1 0 4 4 4 2 Glucose inhibited division protein A TrkA_N PF02254.18 gi|159041689|ref|YP_001540941.1| - 0.00027 21.2 0.1 0.27 11.5 0.0 2.5 2 0 0 2 2 2 2 TrkA-N domain FAD_binding_3 PF01494.19 gi|159041689|ref|YP_001540941.1| - 0.00047 19.5 0.9 0.13 11.5 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 gi|159041689|ref|YP_001540941.1| - 0.00093 19.1 0.1 0.079 12.8 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|159041689|ref|YP_001540941.1| - 0.0092 16.5 0.1 2 9.0 0.0 2.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|159041689|ref|YP_001540941.1| - 0.015 14.9 0.0 0.088 12.4 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1188 PF06690.11 gi|159041689|ref|YP_001540941.1| - 0.017 14.7 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) ThiF PF00899.21 gi|159041689|ref|YP_001540941.1| - 0.019 14.3 0.3 1.2 8.5 0.2 2.2 2 0 0 2 2 2 0 ThiF family AdoHcyase_NAD PF00670.21 gi|159041689|ref|YP_001540941.1| - 0.045 13.8 0.2 1.9 8.5 0.0 3.1 3 1 1 4 4 4 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|159041689|ref|YP_001540941.1| - 0.046 13.7 0.1 0.28 11.2 0.0 2.2 3 0 0 3 3 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.14 gi|159041689|ref|YP_001540941.1| - 0.098 11.5 1.3 0.19 10.5 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase GFO_IDH_MocA PF01408.22 gi|159041689|ref|YP_001540941.1| - 0.13 13.1 0.0 20 6.0 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold FAD_oxidored PF12831.7 gi|159041689|ref|YP_001540941.1| - 0.13 11.5 9.5 0.21 10.9 0.9 3.1 3 1 0 3 3 3 0 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|159041689|ref|YP_001540941.1| - 0.13 12.7 0.0 8.5 6.9 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain DNA_ligase_A_M PF01068.21 gi|159041690|ref|YP_001540942.1| - 7.4e-63 211.9 0.0 1.1e-62 211.4 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|159041690|ref|YP_001540942.1| - 1.2e-35 123.4 0.3 3.8e-35 121.8 0.1 2.0 2 1 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|159041690|ref|YP_001540942.1| - 2e-23 82.8 0.0 2.4e-22 79.4 0.0 2.3 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|159041690|ref|YP_001540942.1| - 4.7e-07 30.3 0.1 8.3e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|159041690|ref|YP_001540942.1| - 0.016 15.2 0.0 0.083 12.9 0.0 2.3 3 0 0 3 3 3 0 DNA ligase OB-like domain Acylphosphatase PF00708.18 gi|159041691|ref|YP_001540943.1| - 1.7e-24 86.0 0.2 4.4e-24 84.7 0.2 1.8 1 0 0 1 1 1 1 Acylphosphatase AIRS_C PF02769.22 gi|159041691|ref|YP_001540943.1| - 0.00029 21.0 0.2 0.00076 19.6 0.2 1.8 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF1115 PF06544.12 gi|159041691|ref|YP_001540943.1| - 0.00053 20.1 0.0 0.00096 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) TusA PF01206.17 gi|159041692|ref|YP_001540944.1| - 3.9e-10 39.4 0.0 4.5e-10 39.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Aldose_epim PF01263.20 gi|159041693|ref|YP_001540945.1| - 1.6e-30 106.4 0.0 9.4e-30 103.9 0.0 1.8 1 1 0 1 1 1 1 Aldose 1-epimerase Nre_N PF04894.12 gi|159041694|ref|YP_001540946.1| - 1.5e-91 307.0 0.0 1.9e-91 306.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|159041694|ref|YP_001540946.1| - 8.8e-23 80.3 0.0 1.6e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal FHA PF00498.26 gi|159041696|ref|YP_001540948.1| - 8.9e-19 67.6 1.4 1.5e-18 66.9 0.7 1.7 2 0 0 2 2 2 1 FHA domain Yop-YscD_cpl PF16697.5 gi|159041696|ref|YP_001540948.1| - 4.7e-10 39.7 0.2 4.2e-09 36.6 0.0 2.0 2 0 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain FHA_2 PF17913.1 gi|159041696|ref|YP_001540948.1| - 0.0021 18.3 0.1 0.037 14.3 0.0 2.0 1 1 1 2 2 2 1 FHA domain DUF104 PF01954.16 gi|159041696|ref|YP_001540948.1| - 0.12 12.8 1.1 0.19 12.2 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF104 Pkinase PF00069.25 gi|159041697|ref|YP_001540949.1| - 5e-39 134.3 0.0 9.3e-39 133.4 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|159041697|ref|YP_001540949.1| - 1.1e-28 100.3 0.0 2.8e-28 98.9 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|159041697|ref|YP_001540949.1| - 0.0018 17.7 0.0 0.0032 16.8 0.0 1.3 1 0 0 1 1 1 1 Kinase-like Kdo PF06293.14 gi|159041697|ref|YP_001540949.1| - 0.0097 15.3 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|159041697|ref|YP_001540949.1| - 0.051 13.5 0.1 4.4 7.1 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family Diphthamide_syn PF01866.17 gi|159041698|ref|YP_001540950.1| - 1.2e-28 100.4 0.0 9.3e-24 84.4 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein DUF72 PF01904.18 gi|159041699|ref|YP_001540951.1| - 7.3e-43 147.2 0.0 8.8e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DrsE PF02635.15 gi|159041700|ref|YP_001540952.1| - 8.7e-07 29.3 0.5 1e-06 29.1 0.5 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|159041700|ref|YP_001540952.1| - 0.026 14.4 0.1 0.033 14.1 0.1 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family SHS2_Rpb7-N PF03876.17 gi|159041701|ref|YP_001540953.1| - 2.4e-19 69.5 0.2 4.3e-19 68.6 0.2 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|159041701|ref|YP_001540953.1| - 2e-09 37.7 2.0 2e-09 37.7 2.0 1.6 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|159041701|ref|YP_001540953.1| - 0.0083 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 DUF5608 PF18356.1 gi|159041701|ref|YP_001540953.1| - 0.71 9.9 4.6 0.5 10.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5608) AFOR_C PF01314.18 gi|159041702|ref|YP_001540954.1| - 2.5e-88 296.7 0.0 3.1e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|159041702|ref|YP_001540954.1| - 8.2e-70 234.7 2.3 1.2e-69 234.1 2.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain LysE PF01810.18 gi|159041703|ref|YP_001540955.1| - 8.9e-14 51.4 12.9 1.1e-13 51.1 12.9 1.1 1 0 0 1 1 1 1 LysE type translocator MR_MLE_C PF13378.6 gi|159041704|ref|YP_001540956.1| - 2.6e-42 144.9 0.0 4.5e-42 144.1 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|159041704|ref|YP_001540956.1| - 8.4e-10 38.9 0.0 1.6e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GD_AH_C PF04295.13 gi|159041705|ref|YP_001540957.1| - 6e-123 410.5 0.0 6.8e-123 410.3 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 gi|159041706|ref|YP_001540958.1| - 2.4e-15 56.9 4.5 4.7e-15 56.0 4.5 1.6 1 1 0 1 1 1 1 SAF domain DUF2190 PF09956.9 gi|159041706|ref|YP_001540958.1| - 0.0005 20.5 1.0 0.062 13.8 0.1 2.2 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2190) SET PF00856.28 gi|159041706|ref|YP_001540958.1| - 0.047 14.1 0.1 12 6.3 0.0 2.9 2 1 1 3 3 3 0 SET domain Peroxin-13_N PF04088.13 gi|159041707|ref|YP_001540959.1| - 0.12 12.7 0.0 0.57 10.4 0.0 1.8 1 1 0 1 1 1 0 Peroxin 13, N-terminal region MFS_1 PF07690.16 gi|159041708|ref|YP_001540960.1| - 9.2e-17 61.0 48.2 6.8e-15 54.8 15.7 3.0 2 1 0 3 3 3 3 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159041708|ref|YP_001540960.1| - 4.1e-08 32.5 0.0 9.5e-08 31.3 0.0 1.6 1 1 0 1 1 1 1 MFS_1 like family DegT_DnrJ_EryC1 PF01041.17 gi|159041709|ref|YP_001540961.1| - 4.9e-06 26.1 0.0 1.6e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|159041709|ref|YP_001540961.1| - 1.8e-05 23.9 0.0 5.7e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|159041709|ref|YP_001540961.1| - 4.4e-05 22.2 0.1 9.8e-05 21.0 0.0 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|159041709|ref|YP_001540961.1| - 0.00059 18.9 0.2 0.0038 16.3 0.2 2.3 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase DUF2066 PF09839.9 gi|159041709|ref|YP_001540961.1| - 0.21 10.9 0.0 0.38 10.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) FMN_dh PF01070.18 gi|159041710|ref|YP_001540962.1| - 2.1e-28 99.4 0.2 6e-27 94.6 0.2 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|159041710|ref|YP_001540962.1| - 4e-06 26.2 1.4 5.6e-06 25.7 0.6 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|159041710|ref|YP_001540962.1| - 3.3e-05 23.1 3.1 0.0028 16.7 2.0 2.7 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Ribosomal_L40e PF01020.17 gi|159041712|ref|YP_001540964.1| - 4.1e-07 29.8 0.5 4.8e-07 29.6 0.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.18 gi|159041712|ref|YP_001540964.1| - 4.1e-06 26.0 0.4 5.1e-06 25.7 0.4 1.1 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|159041712|ref|YP_001540964.1| - 0.00043 19.9 2.8 0.00063 19.4 2.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|159041712|ref|YP_001540964.1| - 0.0018 18.2 0.1 0.002 18.1 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|159041712|ref|YP_001540964.1| - 0.0031 17.5 1.9 0.0041 17.1 1.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RRN7 PF11781.8 gi|159041712|ref|YP_001540964.1| - 0.014 15.0 6.1 0.12 12.1 1.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|159041712|ref|YP_001540964.1| - 0.019 14.4 2.5 0.028 13.8 2.5 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|159041712|ref|YP_001540964.1| - 0.02 14.5 5.2 0.03 14.0 5.2 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-CCHC_2 PF13696.6 gi|159041712|ref|YP_001540964.1| - 0.042 13.7 5.7 1.6 8.6 0.6 2.3 2 0 0 2 2 2 0 Zinc knuckle Rubredoxin_2 PF18073.1 gi|159041712|ref|YP_001540964.1| - 0.067 12.9 3.6 0.96 9.2 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|159041712|ref|YP_001540964.1| - 0.081 12.8 3.1 0.84 9.6 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-Sec23_Sec24 PF04810.15 gi|159041712|ref|YP_001540964.1| - 0.097 12.7 4.3 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger PHD_2 PF13831.6 gi|159041712|ref|YP_001540964.1| - 0.16 11.5 3.1 0.66 9.6 0.2 2.1 2 0 0 2 2 2 0 PHD-finger zf-FPG_IleRS PF06827.14 gi|159041712|ref|YP_001540964.1| - 0.28 11.1 0.7 0.28 11.1 0.7 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L37e PF01907.19 gi|159041712|ref|YP_001540964.1| - 0.93 9.7 8.7 9.7 6.4 8.7 2.0 1 1 0 1 1 1 0 Ribosomal protein L37e zf_UBZ PF18439.1 gi|159041712|ref|YP_001540964.1| - 1.5 8.5 4.4 4.2 7.0 0.1 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Fer4_2 PF12797.7 gi|159041712|ref|YP_001540964.1| - 3.9 7.8 7.1 4.9 7.5 0.8 2.2 1 1 1 2 2 2 0 4Fe-4S binding domain Thy1 PF02511.15 gi|159041713|ref|YP_001540965.1| - 3.6e-39 134.5 0.0 4.4e-39 134.3 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein HTH_3 PF01381.22 gi|159041714|ref|YP_001540966.1| - 5.4e-05 23.2 0.0 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|159041714|ref|YP_001540966.1| - 0.00012 22.0 0.0 0.00075 19.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|159041714|ref|YP_001540966.1| - 0.00034 20.9 0.0 0.00065 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Hydrolase_4 PF12146.8 gi|159041715|ref|YP_001540967.1| - 7.3e-24 84.3 0.9 1.3e-14 54.1 0.2 2.0 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|159041715|ref|YP_001540967.1| - 2.6e-17 63.3 0.7 3.3e-12 46.6 0.3 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|159041715|ref|YP_001540967.1| - 2.8e-16 59.7 0.0 3.9e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|159041715|ref|YP_001540967.1| - 5.4e-13 50.1 0.0 2.4e-11 44.7 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|159041715|ref|YP_001540967.1| - 7.3e-13 48.6 0.0 1e-11 44.8 0.0 2.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|159041715|ref|YP_001540967.1| - 3.8e-09 36.5 0.0 3.4e-06 26.9 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|159041715|ref|YP_001540967.1| - 6.9e-08 32.4 0.0 1.8e-06 27.8 0.0 2.1 1 1 0 1 1 1 1 Putative esterase AXE1 PF05448.12 gi|159041715|ref|YP_001540967.1| - 2.8e-07 29.5 0.2 6.8e-05 21.7 0.1 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.16 gi|159041715|ref|YP_001540967.1| - 6.5e-07 29.4 0.1 0.0027 17.6 0.0 2.4 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase BAAT_C PF08840.11 gi|159041715|ref|YP_001540967.1| - 8.1e-07 29.2 0.1 3.7e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal UPF0227 PF05728.12 gi|159041715|ref|YP_001540967.1| - 2e-05 24.6 0.0 3.7e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) Chlorophyllase2 PF12740.7 gi|159041715|ref|YP_001540967.1| - 3.1e-05 23.0 0.0 8.4e-05 21.6 0.0 1.6 2 0 0 2 2 2 1 Chlorophyllase enzyme LIDHydrolase PF10230.9 gi|159041715|ref|YP_001540967.1| - 5.6e-05 22.8 0.0 0.00011 21.9 0.0 1.5 1 1 0 1 1 1 1 Lipid-droplet associated hydrolase DUF1100 PF06500.11 gi|159041715|ref|YP_001540967.1| - 0.00012 21.0 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_3 PF07859.13 gi|159041715|ref|YP_001540967.1| - 0.00021 21.2 0.0 0.00029 20.8 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Chlorophyllase PF07224.11 gi|159041715|ref|YP_001540967.1| - 0.0012 17.9 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase FSH1 PF03959.13 gi|159041715|ref|YP_001540967.1| - 0.0014 18.3 0.0 0.005 16.5 0.0 1.8 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DUF2048 PF09752.9 gi|159041715|ref|YP_001540967.1| - 0.0014 17.8 0.3 0.13 11.4 0.0 2.2 2 0 0 2 2 2 1 Abhydrolase domain containing 18 Esterase_phd PF10503.9 gi|159041715|ref|YP_001540967.1| - 0.0069 15.9 0.4 0.027 14.0 0.4 1.9 1 1 0 1 1 1 1 Esterase PHB depolymerase Abhydrolase_4 PF08386.10 gi|159041715|ref|YP_001540967.1| - 0.018 15.1 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein PAF-AH_p_II PF03403.13 gi|159041715|ref|YP_001540967.1| - 0.048 12.2 0.1 0.69 8.4 0.1 2.1 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DUF2920 PF11144.8 gi|159041715|ref|YP_001540967.1| - 0.056 12.6 0.4 0.79 8.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Acyl_transf_2 PF02273.15 gi|159041715|ref|YP_001540967.1| - 0.067 12.4 0.6 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 Acyl transferase Ser_hydrolase PF06821.13 gi|159041715|ref|YP_001540967.1| - 0.073 12.9 0.0 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase FBPase_3 PF01950.16 gi|159041716|ref|YP_001540968.1| - 6.8e-176 584.8 0.0 8.2e-176 584.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase PBSX_XtrA PF17356.2 gi|159041716|ref|YP_001540968.1| - 0.21 11.5 0.0 0.41 10.6 0.0 1.4 1 0 0 1 1 1 0 Phage-like element PBSX protein XtrA Hjc PF01870.18 gi|159041717|ref|YP_001540969.1| - 1e-24 86.3 0.0 1.3e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|159041717|ref|YP_001540969.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 MFS_1 PF07690.16 gi|159041718|ref|YP_001540970.1| - 4.3e-26 91.7 43.9 4.3e-26 91.7 43.9 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily Fzo_mitofusin PF04799.13 gi|159041718|ref|YP_001540970.1| - 0.31 10.6 3.3 0.64 9.5 3.3 1.5 1 0 0 1 1 1 0 fzo-like conserved region Peripla_BP_2 PF01497.18 gi|159041720|ref|YP_001540972.1| - 2e-21 76.6 0.0 2.9e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|159041721|ref|YP_001540973.1| - 2.1e-66 224.1 42.6 2.5e-66 223.8 42.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|159041721|ref|YP_001540973.1| - 0.00034 20.2 22.5 0.00053 19.6 22.5 1.4 1 0 0 1 1 1 1 ABC 3 transport family Rax2 PF12768.7 gi|159041721|ref|YP_001540973.1| - 0.097 12.1 0.5 0.22 10.9 0.5 1.5 1 0 0 1 1 1 0 Cortical protein marker for cell polarity ABC_tran PF00005.27 gi|159041722|ref|YP_001540974.1| - 7e-20 71.9 0.2 1.8e-19 70.6 0.2 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041722|ref|YP_001540974.1| - 3.1e-17 63.4 0.1 2.2e-08 34.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041722|ref|YP_001540974.1| - 2.9e-13 49.8 0.8 1.4e-06 28.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|159041722|ref|YP_001540974.1| - 3.8e-12 46.6 0.1 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|159041722|ref|YP_001540974.1| - 5.2e-07 30.4 0.3 8.4e-07 29.7 0.3 1.2 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|159041722|ref|YP_001540974.1| - 6.2e-05 22.3 0.1 8.8e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.6 gi|159041722|ref|YP_001540974.1| - 0.00043 20.0 0.1 0.0011 18.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|159041722|ref|YP_001540974.1| - 0.00046 20.6 0.1 0.0018 18.7 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159041722|ref|YP_001540974.1| - 0.0009 19.5 0.2 0.0028 17.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|159041722|ref|YP_001540974.1| - 0.0023 18.1 0.4 0.011 15.9 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041722|ref|YP_001540974.1| - 0.0026 18.2 0.0 0.0037 17.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|159041722|ref|YP_001540974.1| - 0.0038 17.2 0.2 0.0095 15.9 0.2 1.7 1 1 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|159041722|ref|YP_001540974.1| - 0.0059 16.4 1.6 0.017 14.8 1.5 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|159041722|ref|YP_001540974.1| - 0.02 14.6 0.7 4.3 7.0 0.1 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AFG1_ATPase PF03969.16 gi|159041722|ref|YP_001540974.1| - 0.022 13.7 0.1 0.3 9.9 0.1 2.0 1 1 0 1 1 1 0 AFG1-like ATPase AAA_19 PF13245.6 gi|159041722|ref|YP_001540974.1| - 0.024 15.0 0.4 0.063 13.6 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|159041722|ref|YP_001540974.1| - 0.024 14.2 0.2 0.037 13.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|159041722|ref|YP_001540974.1| - 0.025 14.2 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|159041722|ref|YP_001540974.1| - 0.073 12.8 1.0 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Gtr1_RagA PF04670.12 gi|159041722|ref|YP_001540974.1| - 0.078 12.3 0.2 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|159041722|ref|YP_001540974.1| - 0.14 12.0 0.8 0.29 11.0 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|159041722|ref|YP_001540974.1| - 0.2 11.6 0.2 0.37 10.7 0.2 1.4 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|159041722|ref|YP_001540974.1| - 0.27 10.6 2.6 6.1 6.1 0.1 2.1 1 1 1 2 2 2 0 FtsK/SpoIIIE family ABC_ATPase PF09818.9 gi|159041722|ref|YP_001540974.1| - 0.31 9.8 3.6 0.67 8.7 1.3 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class UxuA PF03786.13 gi|159041725|ref|YP_001540977.1| - 3.4e-76 256.4 0.0 3.9e-49 167.3 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|159041725|ref|YP_001540977.1| - 1.3e-08 34.6 0.0 1.9e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SBP_bac_5 PF00496.22 gi|159041726|ref|YP_001540978.1| - 1.1e-24 87.2 0.5 8.3e-18 64.5 0.0 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041726|ref|YP_001540978.1| - 0.027 14.4 8.9 0.048 13.5 8.9 1.4 1 0 0 1 1 1 0 Rifin DUF4064 PF13273.6 gi|159041726|ref|YP_001540978.1| - 0.79 10.0 10.3 3.1 8.1 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) MGC-24 PF05283.11 gi|159041726|ref|YP_001540978.1| - 1.6 9.2 18.6 3.1 8.2 18.6 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin MFS_1 PF07690.16 gi|159041727|ref|YP_001540979.1| - 1.8e-21 76.5 55.8 2.2e-15 56.4 44.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OCD_Mu_crystall PF02423.15 gi|159041728|ref|YP_001540980.1| - 2.5e-58 197.5 1.0 3.4e-58 197.1 1.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|159041728|ref|YP_001540980.1| - 6.8e-08 32.7 0.4 2.3e-07 31.0 0.4 1.8 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|159041728|ref|YP_001540980.1| - 0.0066 17.0 0.6 0.027 15.0 0.1 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|159041728|ref|YP_001540980.1| - 0.043 14.6 0.1 0.087 13.7 0.1 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold SBE2 PF17076.5 gi|159041728|ref|YP_001540980.1| - 0.15 10.3 0.0 0.2 9.8 0.0 1.1 1 0 0 1 1 1 0 SBE2, cell-wall formation MoeA_N PF03453.17 gi|159041729|ref|YP_001540981.1| - 9.9e-45 152.1 0.1 1.6e-44 151.5 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|159041729|ref|YP_001540981.1| - 2e-20 72.9 0.1 3.2e-20 72.3 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|159041729|ref|YP_001540981.1| - 5.1e-17 61.8 0.1 2.1e-16 59.8 0.1 2.2 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) RNA_pol_A_bac PF01000.26 gi|159041731|ref|YP_001540983.1| - 4e-24 85.1 0.0 7.7e-24 84.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|159041731|ref|YP_001540983.1| - 6.4e-11 41.5 0.0 9.7e-11 41.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Aconitase PF00330.20 gi|159041732|ref|YP_001540984.1| - 3.1e-79 267.1 1.9 5.4e-77 259.8 1.9 2.5 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|159041732|ref|YP_001540984.1| - 8.9e-05 21.4 0.0 0.00013 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Phage_holin_2_4 PF16082.5 gi|159041732|ref|YP_001540984.1| - 0.3 10.8 2.8 0.84 9.4 2.8 1.7 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like IlvN PF07991.12 gi|159041733|ref|YP_001540985.1| - 9.7e-66 220.4 0.0 1.4e-65 219.9 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|159041733|ref|YP_001540985.1| - 2.1e-52 177.3 0.5 2.9e-52 176.8 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|159041733|ref|YP_001540985.1| - 3.1e-06 26.7 0.1 7.9e-06 25.3 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|159041733|ref|YP_001540985.1| - 1.1e-05 25.7 0.0 2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|159041733|ref|YP_001540985.1| - 4.1e-05 24.1 0.0 0.00011 22.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|159041733|ref|YP_001540985.1| - 0.00037 20.6 0.0 0.00065 19.8 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|159041733|ref|YP_001540985.1| - 0.035 13.8 0.0 0.084 12.5 0.0 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT_5 PF13710.6 gi|159041734|ref|YP_001540986.1| - 1.9e-17 62.8 1.1 3.3e-17 62.1 0.7 1.6 1 1 1 2 2 2 1 ACT domain DUF948 PF06103.11 gi|159041734|ref|YP_001540986.1| - 0.075 13.3 0.1 0.11 12.8 0.1 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) ACT_4 PF13291.6 gi|159041734|ref|YP_001540986.1| - 0.11 13.1 1.8 0.19 12.4 1.8 1.4 1 0 0 1 1 1 0 ACT domain TPP_enzyme_N PF02776.18 gi|159041735|ref|YP_001540987.1| - 5.9e-55 185.5 0.1 1.1e-52 178.1 0.1 2.5 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|159041735|ref|YP_001540987.1| - 2.2e-46 157.4 0.1 2.9e-44 150.5 0.0 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|159041735|ref|YP_001540987.1| - 1.1e-43 148.3 0.0 2.6e-43 147.0 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|159041735|ref|YP_001540987.1| - 0.083 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.19 gi|159041736|ref|YP_001540988.1| - 1.4e-88 296.9 2.2 2.1e-88 296.3 2.2 1.2 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.20 gi|159041737|ref|YP_001540989.1| - 1.1e-99 333.9 0.1 1.2e-99 333.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|159041737|ref|YP_001540989.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA DUF3326 PF11805.8 gi|159041737|ref|YP_001540989.1| - 0.043 12.7 0.1 0.32 9.8 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3326) Aconitase_C PF00694.19 gi|159041738|ref|YP_001540990.1| - 2.6e-18 66.6 0.0 3.4e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain ADH_N PF08240.12 gi|159041740|ref|YP_001540992.1| - 1.8e-26 92.2 0.1 3.4e-26 91.3 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159041740|ref|YP_001540992.1| - 2.2e-21 76.2 0.0 4.2e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|159041740|ref|YP_001540992.1| - 1.9e-06 29.0 0.0 3.9e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|159041740|ref|YP_001540992.1| - 0.0065 16.7 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain Lactamase_B PF00753.27 gi|159041741|ref|YP_001540993.1| - 0.0096 15.9 0.1 2.2 8.2 0.1 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Acetyltransf_1 PF00583.25 gi|159041743|ref|YP_001540995.1| - 1e-14 54.8 0.1 1.4e-14 54.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|159041743|ref|YP_001540995.1| - 1e-09 38.7 0.2 1.5e-09 38.1 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|159041743|ref|YP_001540995.1| - 2.3e-08 34.0 0.1 4.2e-08 33.2 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|159041743|ref|YP_001540995.1| - 4.3e-07 29.8 0.1 6.9e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|159041743|ref|YP_001540995.1| - 0.00076 19.6 0.1 0.0012 18.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|159041743|ref|YP_001540995.1| - 0.0068 15.9 0.2 0.007 15.9 0.2 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|159041743|ref|YP_001540995.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|159041743|ref|YP_001540995.1| - 0.036 14.3 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Fer4 PF00037.27 gi|159041744|ref|YP_001540996.1| - 3.5e-09 36.1 10.5 1.2e-07 31.3 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|159041744|ref|YP_001540996.1| - 8.5e-09 35.1 12.2 0.00013 21.9 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041744|ref|YP_001540996.1| - 9.3e-06 25.7 9.2 1.7e-05 24.8 9.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159041744|ref|YP_001540996.1| - 1.1e-05 25.2 11.0 0.00024 21.0 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159041744|ref|YP_001540996.1| - 9.8e-05 22.4 8.9 0.00022 21.3 8.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041744|ref|YP_001540996.1| - 0.0017 18.9 1.6 0.0017 18.9 1.6 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|159041744|ref|YP_001540996.1| - 0.0021 18.8 11.5 0.037 14.8 1.7 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_10 PF13237.6 gi|159041744|ref|YP_001540996.1| - 0.0046 17.0 11.0 0.015 15.4 11.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159041744|ref|YP_001540996.1| - 0.01 16.3 3.1 0.01 16.3 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|159041744|ref|YP_001540996.1| - 0.058 14.3 4.8 0.058 14.3 4.8 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain DPBB_1 PF03330.18 gi|159041744|ref|YP_001540996.1| - 0.32 11.3 1.2 0.9 9.9 0.1 2.1 2 0 0 2 2 2 0 Lytic transglycolase Fer4_16 PF13484.6 gi|159041744|ref|YP_001540996.1| - 0.54 11.2 6.6 0.11 13.5 1.3 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|159041744|ref|YP_001540996.1| - 2 9.1 9.8 0.18 12.4 1.4 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|159041744|ref|YP_001540996.1| - 3.2 8.3 7.5 0.28 11.7 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|159041744|ref|YP_001540996.1| - 9.1 6.9 14.2 0.29 11.7 3.0 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I LTD PF00932.19 gi|159041746|ref|YP_001540998.1| - 0.0068 16.7 0.0 0.0084 16.4 0.0 1.2 1 0 0 1 1 1 1 Lamin Tail Domain HYR PF02494.16 gi|159041746|ref|YP_001540998.1| - 0.09 13.1 0.3 0.24 11.7 0.3 1.8 1 1 0 1 1 1 0 HYR domain DUF4625 PF15418.6 gi|159041746|ref|YP_001540998.1| - 0.091 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Methyltransf_11 PF08241.12 gi|159041748|ref|YP_001541000.1| - 1.6e-20 73.5 0.0 3.2e-20 72.6 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159041748|ref|YP_001541000.1| - 7e-17 61.9 0.0 1.1e-16 61.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159041748|ref|YP_001541000.1| - 1.3e-14 54.4 0.0 1.4e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159041748|ref|YP_001541000.1| - 1.1e-13 51.8 0.0 1.7e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159041748|ref|YP_001541000.1| - 2.5e-12 46.8 0.0 4.1e-12 46.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159041748|ref|YP_001541000.1| - 1.1e-08 34.7 0.0 1.4e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|159041748|ref|YP_001541000.1| - 3.6e-08 33.1 0.0 4.8e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|159041748|ref|YP_001541000.1| - 1.6e-06 28.1 0.1 4.4e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.13 gi|159041748|ref|YP_001541000.1| - 0.00016 21.2 0.1 0.00026 20.5 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.18 gi|159041748|ref|YP_001541000.1| - 0.0002 20.7 0.0 0.00026 20.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain TehB PF03848.14 gi|159041748|ref|YP_001541000.1| - 0.00056 19.4 0.0 0.00076 18.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|159041748|ref|YP_001541000.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.11 gi|159041748|ref|YP_001541000.1| - 0.017 14.7 0.0 0.022 14.4 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.19 gi|159041748|ref|YP_001541000.1| - 0.036 14.2 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_24 PF13578.6 gi|159041748|ref|YP_001541000.1| - 0.048 14.7 0.0 0.075 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|159041748|ref|YP_001541000.1| - 0.083 12.5 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MethyltransfD12 PF02086.15 gi|159041748|ref|YP_001541000.1| - 0.09 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Rz1 PF06085.11 gi|159041748|ref|YP_001541000.1| - 0.1 12.4 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor N6_N4_Mtase PF01555.18 gi|159041748|ref|YP_001541000.1| - 0.13 11.9 0.0 3.1 7.4 0.0 2.1 2 0 0 2 2 2 0 DNA methylase CheR PF01739.18 gi|159041748|ref|YP_001541000.1| - 0.17 11.4 0.0 1.2 8.6 0.0 2.1 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain VAR1 PF05316.12 gi|159041749|ref|YP_001541001.1| - 0.034 13.2 0.2 0.042 12.9 0.2 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein (VAR1) MFS_1 PF07690.16 gi|159041750|ref|YP_001541002.1| - 2e-27 96.0 53.0 1.6e-23 83.2 37.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PdxA PF04166.12 gi|159041751|ref|YP_001541003.1| - 6.9e-93 311.1 0.0 8.1e-93 310.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA tRNA-synt_2 PF00152.20 gi|159041752|ref|YP_001541004.1| - 1.4e-86 290.5 0.0 1.9e-86 290.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|159041752|ref|YP_001541004.1| - 2.9e-10 40.0 0.1 6.9e-10 38.8 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|159041752|ref|YP_001541004.1| - 4.2e-06 26.4 0.3 0.0068 15.9 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Regulator_TrmB PF11495.8 gi|159041753|ref|YP_001541005.1| - 4e-60 202.9 0.0 5e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|159041753|ref|YP_001541005.1| - 5.5e-16 58.2 0.0 1.1e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|159041753|ref|YP_001541005.1| - 0.0052 16.8 0.0 0.0093 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|159041753|ref|YP_001541005.1| - 0.0074 16.1 0.1 0.017 15.0 0.1 1.7 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.6 gi|159041753|ref|YP_001541005.1| - 0.0079 16.3 0.0 0.024 14.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|159041753|ref|YP_001541005.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|159041753|ref|YP_001541005.1| - 0.019 14.9 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|159041753|ref|YP_001541005.1| - 0.034 14.5 0.1 0.063 13.6 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_9 PF08221.11 gi|159041753|ref|YP_001541005.1| - 0.065 13.3 0.1 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|159041753|ref|YP_001541005.1| - 0.12 12.7 0.1 0.33 11.3 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator SBP_bac_5 PF00496.22 gi|159041754|ref|YP_001541006.1| - 1.2e-24 87.0 10.8 2.8e-24 85.8 10.8 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041754|ref|YP_001541006.1| - 0.079 12.9 11.1 0.12 12.2 11.1 1.2 1 0 0 1 1 1 0 Rifin Stevor PF17410.2 gi|159041754|ref|YP_001541006.1| - 4.5 6.7 14.3 7.1 6.1 14.3 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame GFO_IDH_MocA PF01408.22 gi|159041755|ref|YP_001541007.1| - 9.7e-26 91.0 0.0 1.4e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041755|ref|YP_001541007.1| - 0.026 14.5 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.22 gi|159041756|ref|YP_001541008.1| - 9.1e-16 58.8 0.0 2e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159041756|ref|YP_001541008.1| - 5.6e-06 26.3 0.0 9.3e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Thermopsin PF05317.11 gi|159041757|ref|YP_001541009.1| - 3.5e-37 128.3 12.5 4.9e-37 127.8 12.5 1.2 1 0 0 1 1 1 1 Thermopsin Neuraminidase PF18413.1 gi|159041757|ref|YP_001541009.1| - 0.041 13.5 0.5 0.067 12.8 0.5 1.3 1 0 0 1 1 1 0 Neuraminidase-like domain FAD_binding_3 PF01494.19 gi|159041758|ref|YP_001541010.1| - 2.1e-17 63.4 0.0 3.4e-15 56.2 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|159041758|ref|YP_001541010.1| - 1.3e-08 34.3 0.1 6e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|159041758|ref|YP_001541010.1| - 9.5e-06 25.0 0.1 1.8e-05 24.1 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|159041758|ref|YP_001541010.1| - 2e-05 24.2 0.0 2.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|159041758|ref|YP_001541010.1| - 5.3e-05 22.6 0.4 0.0029 16.9 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|159041758|ref|YP_001541010.1| - 0.00014 20.9 0.2 0.0078 15.1 0.1 2.9 3 1 1 4 4 4 1 Tryptophan halogenase HI0933_like PF03486.14 gi|159041758|ref|YP_001541010.1| - 0.00021 20.1 0.1 0.00033 19.5 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|159041758|ref|YP_001541010.1| - 0.00038 19.7 0.6 0.00079 18.6 0.3 1.7 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|159041758|ref|YP_001541010.1| - 0.0025 17.5 0.3 1.6 8.2 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|159041758|ref|YP_001541010.1| - 0.0027 16.8 0.1 0.004 16.3 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|159041758|ref|YP_001541010.1| - 0.003 17.8 2.5 0.0037 17.5 0.1 2.4 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|159041758|ref|YP_001541010.1| - 0.012 14.9 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|159041758|ref|YP_001541010.1| - 0.072 12.4 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thioredoxin_3 PF13192.6 gi|159041759|ref|YP_001541011.1| - 0.041 13.9 0.0 0.11 12.6 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin domain Pex14_N PF04695.13 gi|159041759|ref|YP_001541011.1| - 2 9.0 15.3 3.6 8.2 15.3 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region RGS PF00615.19 gi|159041761|ref|YP_001541013.1| - 0.089 13.1 0.0 20 5.5 0.0 2.3 2 0 0 2 2 2 0 Regulator of G protein signaling domain tRNA-synt_1 PF00133.22 gi|159041762|ref|YP_001541014.1| - 9.8e-163 542.6 0.1 1.4e-162 542.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|159041762|ref|YP_001541014.1| - 5.1e-24 84.7 0.2 4.5e-07 29.0 0.2 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|159041762|ref|YP_001541014.1| - 5.3e-24 84.9 0.0 1.2e-23 83.7 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|159041762|ref|YP_001541014.1| - 3.5e-08 33.2 0.0 0.00033 20.1 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|159041762|ref|YP_001541014.1| - 0.0034 16.3 0.0 0.015 14.2 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|159041762|ref|YP_001541014.1| - 0.033 13.7 0.0 0.11 12.0 0.0 1.8 1 1 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 HscB_4_cys PF18256.1 gi|159041762|ref|YP_001541014.1| - 1.4 8.8 6.4 0.79 9.6 0.7 2.4 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif DUF1122 PF06557.11 gi|159041763|ref|YP_001541015.1| - 4.8e-43 146.6 0.0 7.2e-43 146.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Sugar_tr PF00083.24 gi|159041764|ref|YP_001541016.1| - 7.9e-22 77.7 26.6 7.9e-22 77.7 26.6 2.3 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159041764|ref|YP_001541016.1| - 1.4e-19 70.3 42.1 1.4e-19 70.3 42.1 2.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Neurensin PF14927.6 gi|159041765|ref|YP_001541017.1| - 0.05 13.3 0.4 0.092 12.4 0.4 1.5 1 0 0 1 1 1 0 Neurensin B3_4 PF03483.17 gi|159041766|ref|YP_001541018.1| - 1.1e-25 90.3 0.0 1.6e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain Ca_bind_SSO6904 PF18249.1 gi|159041766|ref|YP_001541018.1| - 0.081 13.3 0.1 0.23 11.8 0.0 1.8 2 0 0 2 2 2 0 Calcium binding protein SSO6904 GMP_synt_C PF00958.22 gi|159041767|ref|YP_001541019.1| - 3.7e-16 58.9 2.2 1.6e-11 44.1 0.1 3.4 3 1 0 3 3 3 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|159041767|ref|YP_001541019.1| - 1.7e-11 43.7 0.0 8.9e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.20 gi|159041767|ref|YP_001541019.1| - 0.00016 21.4 0.0 0.00042 20.1 0.0 1.6 1 1 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|159041767|ref|YP_001541019.1| - 0.011 15.3 0.0 0.14 11.7 0.0 2.1 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC UPF0444 PF15475.6 gi|159041767|ref|YP_001541019.1| - 0.11 12.7 1.1 0.36 11.1 0.5 2.1 2 0 0 2 2 2 0 Transmembrane protein C12orf23, UPF0444 tRNA_Me_trans PF03054.16 gi|159041767|ref|YP_001541019.1| - 0.27 10.0 0.8 6.4 5.5 0.3 2.2 2 0 0 2 2 2 0 tRNA methyl transferase GATase PF00117.28 gi|159041768|ref|YP_001541020.1| - 2.8e-30 105.5 0.0 3.3e-30 105.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|159041768|ref|YP_001541020.1| - 5.2e-09 36.2 0.3 9.6e-08 32.0 0.3 2.6 1 1 1 2 2 2 1 Peptidase C26 T2SSE PF00437.20 gi|159041769|ref|YP_001541021.1| - 4.7e-49 166.9 0.0 6.6e-49 166.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|159041769|ref|YP_001541021.1| - 0.0012 19.4 0.0 0.0028 18.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|159041769|ref|YP_001541021.1| - 0.0018 18.0 0.0 0.0036 17.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|159041769|ref|YP_001541021.1| - 0.029 14.7 0.0 0.26 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|159041769|ref|YP_001541021.1| - 0.035 13.7 0.1 0.055 13.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.18 gi|159041769|ref|YP_001541021.1| - 0.035 13.5 0.1 0.17 11.2 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.18 gi|159041769|ref|YP_001541021.1| - 0.052 13.3 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATP_bind_1 PF03029.17 gi|159041769|ref|YP_001541021.1| - 0.077 12.8 0.1 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|159041769|ref|YP_001541021.1| - 0.083 13.4 0.1 0.13 12.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|159041769|ref|YP_001541021.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|159041769|ref|YP_001541021.1| - 0.12 12.8 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|159041769|ref|YP_001541021.1| - 0.13 12.3 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|159041769|ref|YP_001541021.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TBP PF00352.21 gi|159041771|ref|YP_001541023.1| - 2.7e-62 206.7 0.1 7.4e-30 102.7 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|159041771|ref|YP_001541023.1| - 9.8e-05 22.4 0.0 0.004 17.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) Gly_radical PF01228.21 gi|159041771|ref|YP_001541023.1| - 0.037 14.6 0.0 0.51 10.9 0.0 2.1 2 0 0 2 2 2 0 Glycine radical Rb_C PF08934.10 gi|159041772|ref|YP_001541024.1| - 0.18 11.6 0.0 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 Rb C-terminal domain Nramp PF01566.18 gi|159041773|ref|YP_001541025.1| - 1.9e-38 132.4 25.1 2.5e-38 132.0 25.1 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MoCF_biosynth PF00994.24 gi|159041774|ref|YP_001541026.1| - 6.8e-37 126.3 0.0 9.6e-37 125.8 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|159041774|ref|YP_001541026.1| - 0.02 15.1 0.5 0.11 12.7 0.5 2.2 1 1 0 1 1 1 0 Damage-inducible protein CinA KH domain ABC_tran PF00005.27 gi|159041775|ref|YP_001541027.1| - 1.5e-28 100.0 0.0 2.3e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159041775|ref|YP_001541027.1| - 9.2e-12 45.4 0.0 3e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041775|ref|YP_001541027.1| - 8.3e-05 22.1 0.0 0.046 13.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|159041775|ref|YP_001541027.1| - 0.00046 20.0 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|159041775|ref|YP_001541027.1| - 0.00093 19.4 0.1 0.0022 18.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|159041775|ref|YP_001541027.1| - 0.0018 18.8 0.0 0.0027 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|159041775|ref|YP_001541027.1| - 0.002 18.1 0.1 0.0055 16.6 0.1 1.7 2 0 0 2 2 1 1 RsgA GTPase AAA_16 PF13191.6 gi|159041775|ref|YP_001541027.1| - 0.0032 17.9 0.0 0.0058 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|159041775|ref|YP_001541027.1| - 0.0041 17.6 0.1 0.025 15.0 0.0 2.3 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|159041775|ref|YP_001541027.1| - 0.0042 16.4 0.0 0.0072 15.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin TsaE PF02367.17 gi|159041775|ref|YP_001541027.1| - 0.0073 16.3 0.1 0.013 15.5 0.1 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|159041775|ref|YP_001541027.1| - 0.0075 16.5 0.0 0.065 13.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|159041775|ref|YP_001541027.1| - 0.0094 15.7 0.1 0.018 14.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain APS_kinase PF01583.20 gi|159041775|ref|YP_001541027.1| - 0.021 14.7 0.1 0.094 12.6 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase SRP54 PF00448.22 gi|159041775|ref|YP_001541027.1| - 0.027 14.1 0.1 0.054 13.1 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|159041775|ref|YP_001541027.1| - 0.03 14.3 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|159041775|ref|YP_001541027.1| - 0.037 13.8 0.1 0.079 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|159041775|ref|YP_001541027.1| - 0.038 13.5 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|159041775|ref|YP_001541027.1| - 0.066 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.12 gi|159041775|ref|YP_001541027.1| - 0.072 12.8 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain LVIVD PF08309.11 gi|159041775|ref|YP_001541027.1| - 0.075 12.4 0.2 0.18 11.1 0.2 1.6 1 0 0 1 1 1 0 LVIVD repeat Mg_chelatase PF01078.21 gi|159041775|ref|YP_001541027.1| - 0.082 12.3 0.0 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|159041775|ref|YP_001541027.1| - 0.084 13.3 0.0 0.48 10.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|159041775|ref|YP_001541027.1| - 0.093 13.0 0.4 0.37 11.0 0.3 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|159041775|ref|YP_001541027.1| - 0.11 12.5 0.1 0.53 10.3 0.0 2.1 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|159041775|ref|YP_001541027.1| - 0.11 11.5 0.1 0.18 10.8 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|159041775|ref|YP_001541027.1| - 0.13 11.3 0.1 0.2 10.7 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|159041775|ref|YP_001541027.1| - 0.13 11.9 0.1 0.31 10.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|159041775|ref|YP_001541027.1| - 0.2 11.3 0.4 0.39 10.3 0.4 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|159041775|ref|YP_001541027.1| - 0.28 9.8 0.0 0.38 9.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|159041776|ref|YP_001541028.1| - 0.0005 19.5 28.1 0.00074 19.0 28.1 1.3 1 0 0 1 1 1 1 ABC-2 type transporter Glycos_transf_1 PF00534.20 gi|159041778|ref|YP_001541030.1| - 1.1e-19 70.6 0.0 1.7e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159041778|ref|YP_001541030.1| - 2.1e-11 44.4 0.0 4.4e-11 43.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159041778|ref|YP_001541030.1| - 3.4e-11 43.5 0.1 6.9e-10 39.2 0.1 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|159041778|ref|YP_001541030.1| - 0.013 15.9 0.0 0.035 14.5 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|159041778|ref|YP_001541030.1| - 0.044 14.2 0.0 0.076 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|159041779|ref|YP_001541031.1| - 5.4e-05 23.1 0.1 8.5e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_hydro_4C PF11975.8 gi|159041780|ref|YP_001541032.1| - 1.2e-41 143.2 0.0 1.6e-41 142.7 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 gi|159041780|ref|YP_001541032.1| - 6.8e-37 126.8 0.0 9.9e-37 126.3 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase NAD_Gly3P_dh_N PF01210.23 gi|159041780|ref|YP_001541032.1| - 0.035 14.1 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Abhydrolase_3 PF07859.13 gi|159041781|ref|YP_001541033.1| - 7.4e-14 52.1 0.0 9.4e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|159041781|ref|YP_001541033.1| - 2.4e-10 40.3 0.0 7.3e-07 28.9 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.18 gi|159041781|ref|YP_001541033.1| - 8.1e-05 22.3 0.1 0.19 11.2 0.0 2.5 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|159041781|ref|YP_001541033.1| - 0.00069 20.3 0.0 0.00094 19.8 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|159041781|ref|YP_001541033.1| - 0.026 14.3 0.0 0.09 12.6 0.0 1.7 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Esterase_phd PF10503.9 gi|159041781|ref|YP_001541033.1| - 0.03 13.8 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase Hydrolase_4 PF12146.8 gi|159041781|ref|YP_001541033.1| - 0.032 13.5 0.0 2.1 7.6 0.0 2.4 1 1 0 1 1 1 0 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|159041781|ref|YP_001541033.1| - 0.066 12.9 0.0 3.7 7.1 0.0 2.3 2 0 0 2 2 2 0 alpha/beta hydrolase fold Glyco_hydro_3 PF00933.21 gi|159041782|ref|YP_001541034.1| - 6.5e-72 242.6 0.0 8.7e-72 242.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|159041782|ref|YP_001541034.1| - 8.3e-60 202.2 0.0 1.2e-59 201.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|159041782|ref|YP_001541034.1| - 1.5e-24 85.9 0.4 6.8e-21 74.2 0.0 3.6 3 0 0 3 3 3 2 Fibronectin type III-like domain PA14 PF07691.12 gi|159041782|ref|YP_001541034.1| - 3.4e-23 82.1 0.0 8.5e-23 80.8 0.0 1.6 2 0 0 2 2 2 1 PA14 domain GLEYA PF10528.9 gi|159041782|ref|YP_001541034.1| - 0.0026 18.2 0.0 0.0086 16.5 0.0 1.9 1 1 0 1 1 1 1 GLEYA domain CARDB PF07705.11 gi|159041782|ref|YP_001541034.1| - 0.031 14.5 0.1 0.71 10.2 0.2 2.4 2 0 0 2 2 2 0 CARDB Thermopsin PF05317.11 gi|159041783|ref|YP_001541035.1| - 8.9e-58 195.8 12.6 8.9e-58 195.8 12.6 3.2 4 0 0 4 4 4 1 Thermopsin MLVIN_C PF18697.1 gi|159041783|ref|YP_001541035.1| - 0.016 15.3 1.5 0.19 11.8 0.0 3.2 3 0 0 3 3 3 0 Murine leukemia virus (MLV) integrase (IN) C-terminal domain ASH PF15780.5 gi|159041783|ref|YP_001541035.1| - 0.81 9.9 5.6 48 4.2 0.1 5.0 5 1 1 6 6 6 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Topo-VIb_trans PF09239.11 gi|159041784|ref|YP_001541036.1| - 3.5e-61 205.7 0.1 6.2e-61 204.9 0.1 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|159041784|ref|YP_001541036.1| - 4e-13 49.9 0.0 6.8e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|159041784|ref|YP_001541036.1| - 7.9e-12 45.2 0.0 2e-11 43.9 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|159041784|ref|YP_001541036.1| - 6e-05 22.0 0.0 0.0001 21.3 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF1548 PF07579.11 gi|159041784|ref|YP_001541036.1| - 0.028 14.8 0.0 0.057 13.8 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1548) ATP-grasp_2 PF08442.10 gi|159041785|ref|YP_001541037.1| - 6.7e-52 176.0 0.1 1e-51 175.4 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|159041785|ref|YP_001541037.1| - 4.3e-17 62.3 0.2 8.8e-17 61.3 0.2 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|159041785|ref|YP_001541037.1| - 1.5e-05 24.5 1.1 0.016 14.7 0.2 2.5 3 0 0 3 3 3 2 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|159041785|ref|YP_001541037.1| - 0.0029 17.1 0.1 0.0046 16.5 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF3912 PF13051.6 gi|159041785|ref|YP_001541037.1| - 0.075 13.3 0.2 0.16 12.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) CoA_binding PF02629.19 gi|159041786|ref|YP_001541038.1| - 1.5e-29 102.6 1.3 4.8e-29 100.9 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|159041786|ref|YP_001541038.1| - 3e-16 59.6 0.1 4.6e-16 59.0 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|159041786|ref|YP_001541038.1| - 1.9e-11 43.9 0.0 4.8e-11 42.6 0.0 1.7 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|159041786|ref|YP_001541038.1| - 4e-08 33.7 0.0 9.1e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|159041786|ref|YP_001541038.1| - 0.029 15.2 0.0 0.055 14.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF2286 PF10051.9 gi|159041787|ref|YP_001541039.1| - 2.1e-44 150.6 0.5 2.4e-44 150.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Hydrolase_3 PF08282.12 gi|159041788|ref|YP_001541040.1| - 2.8e-32 112.5 0.1 7e-21 75.1 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|159041788|ref|YP_001541040.1| - 4.3e-09 36.3 0.0 3e-07 30.2 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|159041788|ref|YP_001541040.1| - 1.4e-07 32.0 1.8 0.11 12.8 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|159041788|ref|YP_001541040.1| - 6.1e-07 28.8 0.0 0.0092 15.1 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase HAD PF12710.7 gi|159041788|ref|YP_001541040.1| - 0.0046 17.4 3.0 0.11 12.8 0.1 3.1 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|159041788|ref|YP_001541040.1| - 0.089 12.9 0.0 0.24 11.5 0.0 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase StbA PF06406.11 gi|159041788|ref|YP_001541040.1| - 0.095 11.9 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 StbA protein HAD_2 PF13419.6 gi|159041788|ref|YP_001541040.1| - 0.11 12.6 0.0 0.79 9.8 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CTP-dep_RFKase PF01982.16 gi|159041789|ref|YP_001541041.1| - 4.3e-44 149.5 0.0 6.1e-44 149.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.22 gi|159041789|ref|YP_001541041.1| - 2.3e-07 30.6 0.0 4.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|159041789|ref|YP_001541041.1| - 3.3e-07 30.1 0.0 7.1e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|159041789|ref|YP_001541041.1| - 1.7e-06 27.9 0.1 4.5e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|159041789|ref|YP_001541041.1| - 5.2e-06 25.9 0.0 1.1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|159041789|ref|YP_001541041.1| - 7.8e-05 23.1 0.0 0.00013 22.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|159041789|ref|YP_001541041.1| - 0.00039 20.5 0.0 0.0008 19.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|159041789|ref|YP_001541041.1| - 0.0019 17.8 0.1 0.0034 17.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|159041789|ref|YP_001541041.1| - 0.0021 18.2 0.0 0.0063 16.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|159041789|ref|YP_001541041.1| - 0.0029 17.9 0.0 0.0058 17.0 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.6 gi|159041789|ref|YP_001541041.1| - 0.0047 16.8 0.0 0.0079 16.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|159041789|ref|YP_001541041.1| - 0.006 16.3 0.0 0.049 13.4 0.0 2.1 2 0 0 2 2 2 1 LexA DNA binding domain HTH_10 PF04967.12 gi|159041789|ref|YP_001541041.1| - 0.016 15.0 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 gi|159041789|ref|YP_001541041.1| - 0.021 14.7 0.1 0.047 13.6 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|159041789|ref|YP_001541041.1| - 0.034 14.3 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|159041789|ref|YP_001541041.1| - 0.052 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|159041789|ref|YP_001541041.1| - 0.07 13.0 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.10 gi|159041789|ref|YP_001541041.1| - 0.078 13.1 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator HTH_20 PF12840.7 gi|159041789|ref|YP_001541041.1| - 0.087 12.9 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|159041789|ref|YP_001541041.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain EamA PF00892.20 gi|159041790|ref|YP_001541042.1| - 2.4e-19 69.9 46.2 1.8e-14 54.1 17.3 2.6 2 1 0 2 2 2 2 EamA-like transporter family Alba PF01918.21 gi|159041791|ref|YP_001541043.1| - 4.5e-14 52.0 0.3 4.5e-14 52.0 0.3 1.5 2 0 0 2 2 2 1 Alba TP_methylase PF00590.20 gi|159041792|ref|YP_001541044.1| - 3.1e-34 118.8 0.3 3.8e-34 118.5 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GATase_3 PF07685.14 gi|159041793|ref|YP_001541045.1| - 6.4e-30 104.2 0.2 9.4e-30 103.7 0.2 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|159041793|ref|YP_001541045.1| - 1.6e-13 50.8 0.0 2.6e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|159041793|ref|YP_001541045.1| - 5.7e-13 49.1 0.7 9.1e-08 32.2 0.0 3.1 3 0 0 3 3 3 2 AAA domain DJ-1_PfpI PF01965.24 gi|159041793|ref|YP_001541045.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family ParA PF10609.9 gi|159041793|ref|YP_001541045.1| - 0.14 11.5 0.0 0.44 10.0 0.0 1.7 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase Oxidored_molyb PF00174.19 gi|159041794|ref|YP_001541046.1| - 1e-32 113.1 0.0 1.3e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain ApoO PF09769.9 gi|159041794|ref|YP_001541046.1| - 0.063 13.3 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein O adh_short_C2 PF13561.6 gi|159041795|ref|YP_001541047.1| - 1.2e-40 139.5 0.1 1.5e-40 139.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159041795|ref|YP_001541047.1| - 1.4e-35 122.6 0.2 1.7e-35 122.3 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|159041795|ref|YP_001541047.1| - 4e-06 26.8 0.1 5.2e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|159041795|ref|YP_001541047.1| - 2.2e-05 24.4 0.5 3.2e-05 23.9 0.5 1.2 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 gi|159041795|ref|YP_001541047.1| - 0.0002 21.4 1.6 0.0005 20.1 1.5 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 gi|159041795|ref|YP_001541047.1| - 0.028 14.3 0.2 0.046 13.6 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|159041795|ref|YP_001541047.1| - 0.16 11.2 0.3 0.27 10.4 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain AnmK PF03702.14 gi|159041797|ref|YP_001541049.1| - 1.3e-80 271.3 0.0 1.4e-80 271.1 0.0 1.0 1 0 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase SDH_sah PF01972.16 gi|159041798|ref|YP_001541050.1| - 3.9e-123 410.0 0.2 4.7e-123 409.7 0.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|159041798|ref|YP_001541050.1| - 1.7e-05 24.8 0.1 3.2e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.18 gi|159041798|ref|YP_001541050.1| - 0.0016 18.4 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 ECH_1 PF00378.20 gi|159041798|ref|YP_001541050.1| - 0.0082 15.5 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase PaREP1 PF05942.11 gi|159041799|ref|YP_001541051.1| - 1.1e-31 109.1 1.3 1.1e-31 109.1 1.3 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family FliS PF02561.14 gi|159041799|ref|YP_001541051.1| - 0.065 13.5 0.3 0.094 13.0 0.3 1.3 1 0 0 1 1 1 0 Flagellar protein FliS UbiD PF01977.16 gi|159041801|ref|YP_001541053.1| - 1.1e-115 386.8 0.2 1.2e-115 386.6 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Thr_dehydrat_C PF00585.18 gi|159041801|ref|YP_001541053.1| - 0.031 14.0 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 C-terminal regulatory domain of Threonine dehydratase UbiA PF01040.18 gi|159041802|ref|YP_001541054.1| - 3.5e-22 78.9 23.1 3.5e-22 78.9 23.1 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family Beta-lactamase PF00144.24 gi|159041803|ref|YP_001541055.1| - 1.4e-54 185.6 0.1 1.8e-54 185.2 0.1 1.0 1 0 0 1 1 1 1 Beta-lactamase TRAM PF01938.20 gi|159041804|ref|YP_001541056.1| - 1e-13 51.1 1.4 1.4e-13 50.6 1.4 1.2 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|159041804|ref|YP_001541056.1| - 0.039 14.1 0.2 13 6.0 0.0 2.2 2 0 0 2 2 2 0 TRAM domain CSD2 PF17876.1 gi|159041804|ref|YP_001541056.1| - 0.051 13.8 2.5 2.7 8.2 0.1 2.2 1 1 1 2 2 2 0 Cold shock domain RsgA_N PF16745.5 gi|159041804|ref|YP_001541056.1| - 0.053 13.3 0.2 0.09 12.5 0.2 1.5 1 0 0 1 1 1 0 RsgA N-terminal domain CusF_Ec PF11604.8 gi|159041804|ref|YP_001541056.1| - 0.11 12.5 0.1 8.4 6.4 0.0 2.2 2 0 0 2 2 2 0 Copper binding periplasmic protein CusF S1 PF00575.23 gi|159041804|ref|YP_001541056.1| - 0.34 11.3 6.1 2.7 8.4 1.2 2.3 1 1 1 2 2 2 0 S1 RNA binding domain ACP_syn_III_C PF08541.10 gi|159041805|ref|YP_001541057.1| - 2.4e-13 50.0 0.0 1e-12 48.0 0.0 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|159041805|ref|YP_001541057.1| - 1.3e-06 27.9 0.0 2.3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|159041805|ref|YP_001541057.1| - 0.00069 19.5 0.2 0.00097 19.0 0.2 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|159041805|ref|YP_001541057.1| - 0.0034 17.1 0.1 0.15 11.7 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal OB_aCoA_assoc PF01796.17 gi|159041806|ref|YP_001541058.1| - 3.7e-11 42.9 0.0 5e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|159041806|ref|YP_001541058.1| - 1.5e-10 40.7 2.4 1.5e-10 40.7 2.4 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) PyrI_C PF02748.15 gi|159041806|ref|YP_001541058.1| - 0.09 12.7 0.2 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Thiolase_N PF00108.23 gi|159041807|ref|YP_001541059.1| - 2e-11 43.8 0.0 4.4e-11 42.6 0.0 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|159041807|ref|YP_001541059.1| - 0.043 13.5 0.1 0.091 12.4 0.1 1.5 1 0 0 1 1 1 0 Thiolase, C-terminal domain Endonuclease_5 PF04493.14 gi|159041809|ref|YP_001541061.1| - 7.4e-52 175.9 0.2 9.4e-52 175.6 0.2 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|159041809|ref|YP_001541061.1| - 0.0022 17.4 0.0 0.0075 15.7 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF99 DUF357 PF04010.13 gi|159041810|ref|YP_001541062.1| - 1.2e-18 66.9 0.5 1.2e-18 66.9 0.5 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|159041810|ref|YP_001541062.1| - 5.1e-15 55.9 0.0 7.2e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF498 PF04430.14 gi|159041810|ref|YP_001541062.1| - 0.0006 19.9 0.0 0.0013 18.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) UBA PF00627.31 gi|159041810|ref|YP_001541062.1| - 0.027 14.4 0.3 0.8 9.7 0.0 2.8 3 0 0 3 3 3 0 UBA/TS-N domain RPN7 PF10602.9 gi|159041810|ref|YP_001541062.1| - 0.074 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 DUF3343 PF11823.8 gi|159041810|ref|YP_001541062.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Glycos_transf_2 PF00535.26 gi|159041811|ref|YP_001541063.1| - 4.3e-16 59.2 0.0 6.3e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|159041811|ref|YP_001541063.1| - 5.2e-16 58.6 0.0 8.6e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|159041811|ref|YP_001541063.1| - 1.3e-13 51.4 0.0 1.8e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|159041811|ref|YP_001541063.1| - 0.00016 21.7 6.9 0.00024 21.1 6.8 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|159041811|ref|YP_001541063.1| - 0.047 13.1 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Pirin PF02678.16 gi|159041812|ref|YP_001541064.1| - 1.4e-35 121.5 0.1 2.2e-35 120.9 0.1 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|159041812|ref|YP_001541064.1| - 9.5e-31 106.2 0.0 5.4e-30 103.8 0.0 2.0 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|159041812|ref|YP_001541064.1| - 0.0086 15.8 2.6 0.048 13.4 0.8 2.7 2 1 0 2 2 2 1 Cupin domain Cupin_3 PF05899.12 gi|159041812|ref|YP_001541064.1| - 0.063 13.0 0.4 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF861) OrfB_IS605 PF01385.19 gi|159041813|ref|YP_001541065.1| - 1e-40 138.7 0.0 1.8e-40 137.9 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|159041813|ref|YP_001541065.1| - 7.1e-14 51.5 0.0 1.4e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain MFS_1 PF07690.16 gi|159041814|ref|YP_001541066.1| - 3.4e-13 49.2 39.7 7.3e-13 48.2 39.2 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159041814|ref|YP_001541066.1| - 0.0019 17.1 3.4 0.0019 17.1 3.4 3.5 3 1 0 4 4 4 1 Sugar (and other) transporter DUF1414 PF07208.11 gi|159041814|ref|YP_001541066.1| - 0.013 15.5 0.4 0.013 15.5 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1414) MFS_1_like PF12832.7 gi|159041814|ref|YP_001541066.1| - 0.037 12.9 13.7 0.41 9.4 6.4 2.4 2 0 0 2 2 2 0 MFS_1 like family DUF423 PF04241.15 gi|159041814|ref|YP_001541066.1| - 0.3 11.3 5.7 0.13 12.4 1.9 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF423) UPF0182 PF03699.13 gi|159041814|ref|YP_001541066.1| - 1.5 6.9 6.8 2.4 6.2 6.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) ACT PF01842.25 gi|159041815|ref|YP_001541067.1| - 1.3e-07 31.2 0.4 2.5e-07 30.3 0.4 1.6 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|159041815|ref|YP_001541067.1| - 6.6e-06 26.6 0.8 1.4e-05 25.6 0.2 1.8 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|159041815|ref|YP_001541067.1| - 0.00018 21.4 0.0 0.00044 20.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain ATP_Ca_trans_C PF12424.8 gi|159041815|ref|YP_001541067.1| - 0.032 14.7 0.3 6 7.4 0.0 2.5 2 0 0 2 2 2 0 Plasma membrane calcium transporter ATPase C terminal ACT_7 PF13840.6 gi|159041815|ref|YP_001541067.1| - 0.064 13.1 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 ACT domain E1-E2_ATPase PF00122.20 gi|159041816|ref|YP_001541068.1| - 3.1e-52 176.7 2.5 4.1e-52 176.3 0.7 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|159041816|ref|YP_001541068.1| - 5.1e-41 141.3 0.5 8.4e-41 140.6 0.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|159041816|ref|YP_001541068.1| - 4e-21 75.2 1.0 6.9e-16 58.4 0.1 3.0 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|159041816|ref|YP_001541068.1| - 0.0001 22.2 0.4 0.00019 21.3 0.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|159041816|ref|YP_001541068.1| - 0.009 16.4 0.1 0.076 13.4 0.1 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase YHS PF04945.13 gi|159041817|ref|YP_001541069.1| - 1.4e-19 69.9 1.6 1.7e-19 69.6 1.6 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|159041817|ref|YP_001541069.1| - 9.3e-05 22.7 0.6 0.00012 22.3 0.6 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|159041817|ref|YP_001541069.1| - 0.0003 20.7 0.6 0.0004 20.3 0.6 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DNA_ligase_ZBD PF03119.16 gi|159041817|ref|YP_001541069.1| - 0.0035 17.3 0.1 0.0048 16.9 0.1 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain FAP206 PF12018.8 gi|159041817|ref|YP_001541069.1| - 0.022 14.3 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF2116 PF09889.9 gi|159041817|ref|YP_001541069.1| - 0.19 11.8 3.3 0.7 9.9 3.3 1.8 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.10 gi|159041818|ref|YP_001541070.1| - 1.2e-17 63.9 7.0 2.2e-17 63.1 7.0 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|159041818|ref|YP_001541070.1| - 3.5e-09 36.1 0.2 3.5e-09 36.1 0.2 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|159041818|ref|YP_001541070.1| - 5.9e-08 32.5 0.1 1.3e-07 31.4 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|159041818|ref|YP_001541070.1| - 7.8e-08 32.1 0.1 1.4e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|159041818|ref|YP_001541070.1| - 1.6e-07 31.1 0.3 3e-07 30.2 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|159041818|ref|YP_001541070.1| - 1.1e-06 28.4 0.6 1.8e-06 27.7 0.6 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|159041818|ref|YP_001541070.1| - 1.6e-06 27.8 1.8 2.9e-06 27.0 1.8 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|159041818|ref|YP_001541070.1| - 3.8e-06 26.7 0.1 7.8e-06 25.7 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|159041818|ref|YP_001541070.1| - 3e-05 23.8 0.7 5.4e-05 23.0 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|159041818|ref|YP_001541070.1| - 4.2e-05 23.2 0.1 8.7e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|159041818|ref|YP_001541070.1| - 5.5e-05 23.0 0.2 0.00015 21.6 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|159041818|ref|YP_001541070.1| - 0.00019 21.3 0.2 0.00039 20.3 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|159041818|ref|YP_001541070.1| - 0.00049 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|159041818|ref|YP_001541070.1| - 0.00059 19.8 0.1 0.0011 18.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_17 PF12728.7 gi|159041818|ref|YP_001541070.1| - 0.0008 19.5 3.5 0.0028 17.8 0.6 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|159041818|ref|YP_001541070.1| - 0.0011 19.1 0.2 0.002 18.3 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|159041818|ref|YP_001541070.1| - 0.0042 17.2 0.0 0.0081 16.3 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|159041818|ref|YP_001541070.1| - 0.0071 16.7 0.2 0.021 15.2 0.2 1.8 1 1 1 2 2 2 1 Transcriptional regulator HTH_6 PF01418.17 gi|159041818|ref|YP_001541070.1| - 0.0077 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_20 PF12840.7 gi|159041818|ref|YP_001541070.1| - 0.011 15.7 0.9 0.016 15.3 0.3 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Mga PF05043.13 gi|159041818|ref|YP_001541070.1| - 0.012 16.2 0.0 0.023 15.3 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain Zn_ribbon_recom PF13408.6 gi|159041818|ref|YP_001541070.1| - 0.013 15.9 5.6 0.013 15.9 5.6 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-FCS PF06467.14 gi|159041818|ref|YP_001541070.1| - 0.016 15.2 0.4 0.027 14.4 0.4 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Sigma70_r4 PF04545.16 gi|159041818|ref|YP_001541070.1| - 0.026 14.0 0.2 0.051 13.1 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|159041818|ref|YP_001541070.1| - 0.027 14.3 0.1 0.048 13.5 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain LacI PF00356.21 gi|159041818|ref|YP_001541070.1| - 0.03 14.1 0.2 0.049 13.4 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_3 PF01381.22 gi|159041818|ref|YP_001541070.1| - 0.035 14.2 0.1 0.072 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix FtsK_gamma PF09397.10 gi|159041818|ref|YP_001541070.1| - 0.04 13.7 0.1 0.091 12.6 0.1 1.5 1 0 0 1 1 1 0 Ftsk gamma domain HTH_31 PF13560.6 gi|159041818|ref|YP_001541070.1| - 0.04 14.3 0.5 0.04 14.3 0.5 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 gi|159041818|ref|YP_001541070.1| - 0.042 13.5 0.4 0.091 12.4 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|159041818|ref|YP_001541070.1| - 0.047 13.1 0.0 0.085 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.27 gi|159041818|ref|YP_001541070.1| - 0.053 13.5 0.3 0.097 12.6 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.6 gi|159041818|ref|YP_001541070.1| - 0.055 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|159041818|ref|YP_001541070.1| - 0.065 13.0 0.2 0.065 13.0 0.2 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|159041818|ref|YP_001541070.1| - 0.072 13.5 0.1 0.13 12.7 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TetR_N PF00440.23 gi|159041818|ref|YP_001541070.1| - 0.082 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Crp PF00325.20 gi|159041818|ref|YP_001541070.1| - 0.1 12.3 0.3 0.21 11.3 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family IF2_N PF04760.15 gi|159041818|ref|YP_001541070.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HHH_5 PF14520.6 gi|159041818|ref|YP_001541070.1| - 0.12 13.0 0.0 0.34 11.5 0.0 1.8 2 0 0 2 2 1 0 Helix-hairpin-helix domain DUF134 PF02001.16 gi|159041818|ref|YP_001541070.1| - 0.12 12.9 0.1 1.1 9.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF134 SCAB-ABD PF16711.5 gi|159041818|ref|YP_001541070.1| - 0.89 9.5 5.2 1 9.3 0.8 2.3 2 0 0 2 2 2 0 Actin-binding domain of plant-specific actin-binding protein SecY PF00344.20 gi|159041819|ref|YP_001541071.1| - 4.6e-58 196.9 28.9 6e-58 196.5 28.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|159041819|ref|YP_001541071.1| - 6.8e-05 22.6 0.6 6.8e-05 22.6 0.6 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Bundlin PF05307.11 gi|159041819|ref|YP_001541071.1| - 0.074 12.9 0.6 0.14 12.0 0.6 1.4 1 0 0 1 1 1 0 Bundlin ATP_bind_3 PF01171.20 gi|159041820|ref|YP_001541072.1| - 4.1e-10 39.7 0.0 6.5e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|159041820|ref|YP_001541072.1| - 0.00016 21.8 0.0 0.00034 20.7 0.0 1.6 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|159041820|ref|YP_001541072.1| - 0.001 17.9 0.0 0.0014 17.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|159041820|ref|YP_001541072.1| - 0.0014 18.1 1.1 0.0014 18.1 1.1 3.1 3 0 0 3 3 3 1 Zinc-ribbon Asn_synthase PF00733.21 gi|159041820|ref|YP_001541072.1| - 0.2 11.3 0.0 0.27 10.8 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase RecR PF02132.15 gi|159041820|ref|YP_001541072.1| - 4.2 7.0 10.8 0.6 9.7 1.4 3.2 3 0 0 3 3 3 0 RecR protein DZR PF12773.7 gi|159041820|ref|YP_001541072.1| - 6.8 6.8 8.0 6.7 6.8 0.4 3.0 3 0 0 3 3 3 0 Double zinc ribbon tRNA_SAD PF07973.14 gi|159041822|ref|YP_001541074.1| - 9e-11 41.7 0.2 2e-10 40.6 0.2 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|159041822|ref|YP_001541074.1| - 4.5e-09 35.4 0.3 6.4e-09 34.9 0.3 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) AA_permease_2 PF13520.6 gi|159041823|ref|YP_001541075.1| - 5.9e-40 137.4 47.3 5.9e-40 137.4 47.3 2.4 1 1 0 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|159041823|ref|YP_001541075.1| - 3.2e-15 55.7 47.9 3.2e-15 55.7 47.9 2.1 1 1 1 2 2 2 1 Amino acid permease DeoC PF01791.9 gi|159041824|ref|YP_001541076.1| - 7.3e-41 140.3 0.0 8.6e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PFK PF00365.20 gi|159041825|ref|YP_001541077.1| - 5.9e-89 298.2 0.2 7.6e-89 297.8 0.2 1.1 1 0 0 1 1 1 1 Phosphofructokinase Glyco_transf_4 PF13439.6 gi|159041825|ref|YP_001541077.1| - 0.0025 17.8 0.1 0.0078 16.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Bmp PF02608.14 gi|159041825|ref|YP_001541077.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like QueC PF06508.13 gi|159041826|ref|YP_001541078.1| - 4.1e-54 183.3 0.0 5.6e-54 182.8 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|159041826|ref|YP_001541078.1| - 2.3e-15 56.6 0.0 3.9e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|159041826|ref|YP_001541078.1| - 7.8e-09 35.8 0.0 4.7e-08 33.3 0.0 2.0 1 1 1 2 2 2 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|159041826|ref|YP_001541078.1| - 3.4e-06 26.8 0.0 1.2e-05 25.1 0.0 1.9 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|159041826|ref|YP_001541078.1| - 1.4e-05 24.1 0.0 5.7e-05 22.1 0.0 2.0 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_1 PF03029.17 gi|159041827|ref|YP_001541079.1| - 2.1e-13 50.6 0.5 4.5e-08 33.2 0.0 2.2 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|159041827|ref|YP_001541079.1| - 4.7e-13 49.0 0.0 6.2e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 gi|159041827|ref|YP_001541079.1| - 7e-09 35.9 0.0 9.6e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|159041827|ref|YP_001541079.1| - 3.8e-07 29.8 0.0 4.5e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|159041827|ref|YP_001541079.1| - 4e-07 29.6 0.0 6.8e-07 28.9 0.0 1.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.23 gi|159041827|ref|YP_001541079.1| - 0.00026 21.1 0.0 0.00033 20.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|159041827|ref|YP_001541079.1| - 0.0015 18.3 0.4 0.0031 17.2 0.4 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.18 gi|159041827|ref|YP_001541079.1| - 0.0048 16.2 1.0 0.023 14.0 0.0 2.0 2 0 0 2 2 2 1 Septin TsaE PF02367.17 gi|159041827|ref|YP_001541079.1| - 0.0053 16.7 0.1 0.0098 15.9 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|159041827|ref|YP_001541079.1| - 0.012 15.5 0.7 0.049 13.5 0.5 2.0 1 1 1 2 2 2 0 NTPase ABC_tran PF00005.27 gi|159041827|ref|YP_001541079.1| - 0.015 15.8 0.1 0.029 14.9 0.1 1.5 1 1 0 1 1 1 0 ABC transporter dNK PF01712.19 gi|159041827|ref|YP_001541079.1| - 0.016 15.1 0.1 0.026 14.4 0.1 1.4 1 0 0 1 1 1 0 Deoxynucleoside kinase GTP_EFTU PF00009.27 gi|159041827|ref|YP_001541079.1| - 0.028 14.0 0.3 1.1 8.8 0.3 2.3 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|159041827|ref|YP_001541079.1| - 0.034 14.4 0.9 0.092 13.0 0.9 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|159041827|ref|YP_001541079.1| - 0.042 13.8 0.2 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase Gtr1_RagA PF04670.12 gi|159041827|ref|YP_001541079.1| - 0.043 13.2 0.0 0.055 12.8 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Rad17 PF03215.15 gi|159041827|ref|YP_001541079.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain Pox_A32 PF04665.12 gi|159041827|ref|YP_001541079.1| - 0.059 12.8 0.3 0.36 10.3 0.0 1.9 2 0 0 2 2 2 0 Poxvirus A32 protein cobW PF02492.19 gi|159041827|ref|YP_001541079.1| - 0.07 12.7 0.1 0.18 11.4 0.1 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|159041827|ref|YP_001541079.1| - 0.089 13.2 0.9 2.2 8.7 0.8 2.6 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|159041827|ref|YP_001541079.1| - 0.094 13.3 0.3 0.18 12.3 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|159041827|ref|YP_001541079.1| - 0.13 12.3 0.1 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|159041827|ref|YP_001541079.1| - 0.13 11.6 0.0 0.69 9.2 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|159041827|ref|YP_001541079.1| - 0.17 11.5 0.2 0.43 10.3 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|159041827|ref|YP_001541079.1| - 0.26 11.5 0.6 0.57 10.3 0.1 1.7 1 1 1 2 2 2 0 AAA domain SYCP2_ARLD PF18581.1 gi|159041828|ref|YP_001541080.1| - 0.04 13.9 0.1 0.061 13.3 0.1 1.2 1 0 0 1 1 1 0 Synaptonemal complex 2 armadillo-repeat-like domain Peptidase_A4 PF01828.17 gi|159041830|ref|YP_001541082.1| - 1.1e-33 116.5 5.1 1.3e-33 116.3 5.1 1.2 1 0 0 1 1 1 1 Peptidase A4 family TauE PF01925.19 gi|159041831|ref|YP_001541083.1| - 0.02 14.6 0.0 0.022 14.4 0.0 1.0 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE Spore_YtrH PF14034.6 gi|159041831|ref|YP_001541083.1| - 0.035 14.3 0.0 0.045 13.9 0.0 1.1 1 0 0 1 1 1 0 Sporulation protein YtrH NCE101 PF11654.8 gi|159041831|ref|YP_001541083.1| - 0.044 13.5 0.0 0.082 12.6 0.0 1.5 1 0 0 1 1 1 0 Non-classical export protein 1 DUF5516 PF17637.2 gi|159041832|ref|YP_001541084.1| - 0.16 11.7 0.6 0.16 11.7 0.6 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5516) Rieske PF00355.26 gi|159041835|ref|YP_001541087.1| - 4.7e-12 45.7 0.0 5.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|159041835|ref|YP_001541087.1| - 9.6e-05 22.3 0.0 0.00012 22.0 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain G_glu_transpept PF01019.21 gi|159041836|ref|YP_001541088.1| - 4.9e-107 358.8 0.0 1.1e-106 357.7 0.0 1.5 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase DoxX PF07681.12 gi|159041837|ref|YP_001541089.1| - 2.7e-15 56.7 11.0 1.9e-14 54.0 7.6 2.2 1 1 1 2 2 2 1 DoxX DoxX_2 PF13564.6 gi|159041837|ref|YP_001541089.1| - 5.7e-06 26.4 2.1 5.7e-06 26.4 2.1 1.9 1 1 1 2 2 2 1 DoxX-like family DoxD PF04173.13 gi|159041837|ref|YP_001541089.1| - 0.037 13.9 9.0 0.37 10.7 8.6 2.3 1 1 1 2 2 2 0 TQO small subunit DoxD HxlR PF01638.17 gi|159041838|ref|YP_001541090.1| - 1.4e-18 66.5 0.0 1.8e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|159041838|ref|YP_001541090.1| - 2.4e-05 24.3 0.0 3.2e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|159041838|ref|YP_001541090.1| - 0.0013 18.5 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_5 PF01022.20 gi|159041838|ref|YP_001541090.1| - 0.0045 16.8 0.0 0.0072 16.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF505 PF04458.12 gi|159041838|ref|YP_001541090.1| - 0.0047 15.4 0.0 0.0058 15.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_Crp_2 PF13545.6 gi|159041838|ref|YP_001541090.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PaaX PF07848.12 gi|159041838|ref|YP_001541090.1| - 0.028 14.7 0.0 0.041 14.1 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_45 PF14947.6 gi|159041838|ref|YP_001541090.1| - 0.029 14.3 0.0 0.034 14.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix GntR PF00392.21 gi|159041838|ref|YP_001541090.1| - 0.045 13.4 0.0 0.076 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|159041838|ref|YP_001541090.1| - 0.075 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|159041838|ref|YP_001541090.1| - 0.08 12.5 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|159041838|ref|YP_001541090.1| - 0.099 12.6 0.1 0.2 11.6 0.1 1.6 1 1 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|159041838|ref|YP_001541090.1| - 0.16 12.4 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator SBP_bac_5 PF00496.22 gi|159041839|ref|YP_001541091.1| - 1.8e-32 112.7 12.1 3e-32 112.0 12.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041839|ref|YP_001541091.1| - 0.025 14.5 7.2 0.044 13.7 7.2 1.3 1 0 0 1 1 1 0 Rifin MGC-24 PF05283.11 gi|159041839|ref|YP_001541091.1| - 0.14 12.6 14.0 0.26 11.7 14.0 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Stevor PF17410.2 gi|159041839|ref|YP_001541091.1| - 4 6.9 10.5 8 5.9 10.5 1.5 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF608 PF04685.13 gi|159041841|ref|YP_001541093.1| - 4.1e-51 174.3 0.0 4.7e-50 170.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|159041841|ref|YP_001541093.1| - 1.9e-22 80.2 0.0 3.7e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term Bac_rhamnosid6H PF17389.2 gi|159041841|ref|YP_001541093.1| - 5.2e-05 22.7 0.0 0.0001 21.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_52 PF03512.13 gi|159041841|ref|YP_001541093.1| - 0.0094 14.9 0.0 0.014 14.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 52 GDE_C PF06202.14 gi|159041841|ref|YP_001541093.1| - 0.013 14.5 0.0 0.47 9.3 0.0 2.2 2 0 0 2 2 2 0 Amylo-alpha-1,6-glucosidase Ribosomal_L2_C PF03947.18 gi|159041843|ref|YP_001541095.1| - 1e-40 138.8 3.9 1.6e-40 138.2 3.9 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|159041843|ref|YP_001541095.1| - 1.2e-07 31.5 0.0 4.5e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Proton_antipo_M PF00361.20 gi|159041844|ref|YP_001541096.1| - 6.8e-20 71.5 34.0 6.8e-20 71.5 34.0 2.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|159041845|ref|YP_001541097.1| - 5.8e-35 120.9 31.3 1.3e-30 106.7 26.1 3.4 2 1 0 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|159041845|ref|YP_001541097.1| - 1.3e-05 25.2 8.4 1.3e-05 25.2 8.4 3.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|159041846|ref|YP_001541098.1| - 7.8e-37 127.0 33.8 9.1e-37 126.8 31.6 2.1 1 1 1 2 2 2 1 Proton-conducting membrane transporter Oxidored_q2 PF00420.24 gi|159041847|ref|YP_001541099.1| - 2.5e-08 33.5 10.4 3.8e-08 32.9 10.4 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Ceramidase PF05875.12 gi|159041847|ref|YP_001541099.1| - 0.11 11.9 3.0 0.13 11.7 3.0 1.0 1 0 0 1 1 1 0 Ceramidase Lig_chan PF00060.26 gi|159041847|ref|YP_001541099.1| - 8.3 6.2 6.0 0.55 10.1 0.5 1.8 2 1 1 3 3 3 0 Ligand-gated ion channel Oxidored_q3 PF00499.20 gi|159041848|ref|YP_001541100.1| - 5.6e-05 22.9 21.1 8.1e-05 22.4 21.1 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 7tm_3 PF00003.22 gi|159041848|ref|YP_001541100.1| - 0.27 10.9 14.2 0.71 9.6 14.1 1.7 1 1 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR Nop PF01798.18 gi|159041849|ref|YP_001541101.1| - 4e-64 216.2 0.0 8.1e-64 215.2 0.0 1.5 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin BSD PF03909.17 gi|159041849|ref|YP_001541101.1| - 0.34 10.9 1.3 4.4 7.4 0.1 2.8 2 1 0 2 2 2 0 BSD domain PAP2 PF01569.21 gi|159041850|ref|YP_001541102.1| - 2.8e-17 62.7 3.7 2.8e-17 62.7 3.7 1.9 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|159041850|ref|YP_001541102.1| - 9.4e-07 28.7 12.3 2.8e-06 27.2 12.3 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|159041850|ref|YP_001541102.1| - 0.0094 16.5 1.0 0.0094 16.5 1.0 2.5 3 0 0 3 3 3 1 PAP2 superfamily C-terminal Zn_Tnp_IS1595 PF12760.7 gi|159041851|ref|YP_001541103.1| - 0.0008 19.3 0.7 0.0015 18.5 0.7 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF935 PF06074.12 gi|159041851|ref|YP_001541103.1| - 0.026 13.3 0.0 0.034 12.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF935) DUF2752 PF10825.8 gi|159041851|ref|YP_001541103.1| - 0.057 13.5 3.8 0.58 10.2 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zinc_ribbon_4 PF13717.6 gi|159041851|ref|YP_001541103.1| - 0.071 13.0 1.2 10 6.1 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|159041851|ref|YP_001541103.1| - 0.11 12.4 1.1 6.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HypA PF01155.19 gi|159041851|ref|YP_001541103.1| - 0.11 12.5 0.8 0.26 11.3 0.1 2.0 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|159041851|ref|YP_001541103.1| - 1.3 9.2 3.7 26 5.0 0.0 2.8 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 EamA PF00892.20 gi|159041852|ref|YP_001541104.1| - 0.0014 18.8 39.5 0.014 15.6 15.6 3.1 1 1 2 3 3 3 2 EamA-like transporter family ABC_membrane PF00664.23 gi|159041853|ref|YP_001541105.1| - 3.5e-06 26.9 9.2 0.00029 20.6 9.2 2.7 1 1 0 1 1 1 1 ABC transporter transmembrane region DUF1427 PF07235.11 gi|159041853|ref|YP_001541105.1| - 0.00023 21.0 0.1 0.00062 19.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) Glyco_hydro_38N PF01074.22 gi|159041854|ref|YP_001541106.1| - 6.1e-63 212.9 0.1 1e-62 212.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|159041854|ref|YP_001541106.1| - 2.2e-51 175.0 0.0 3.6e-51 174.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|159041854|ref|YP_001541106.1| - 3.6e-24 84.7 0.2 7.1e-24 83.8 0.2 1.5 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|159041854|ref|YP_001541106.1| - 4.2e-06 26.8 0.0 9.4e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_57 PF03065.15 gi|159041854|ref|YP_001541106.1| - 0.071 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 AAA_18 PF13238.6 gi|159041855|ref|YP_001541107.1| - 4.8e-13 49.8 0.0 7.3e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|159041855|ref|YP_001541107.1| - 0.028 14.8 0.0 0.039 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|159041856|ref|YP_001541108.1| - 1.1e-62 211.4 0.0 1.3e-62 211.2 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|159041856|ref|YP_001541108.1| - 0.00059 18.6 0.1 0.0015 17.3 0.1 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|159041856|ref|YP_001541108.1| - 0.00061 19.4 0.1 0.0015 18.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|159041856|ref|YP_001541108.1| - 0.0087 15.6 0.1 0.18 11.3 0.0 2.1 2 0 0 2 2 2 1 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|159041856|ref|YP_001541108.1| - 0.089 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Sigma54_activat PF00158.26 gi|159041856|ref|YP_001541108.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|159041856|ref|YP_001541108.1| - 0.18 12.1 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain MFS_1 PF07690.16 gi|159041857|ref|YP_001541109.1| - 2.7e-30 105.5 56.8 2.9e-16 59.3 33.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Lig_chan PF00060.26 gi|159041857|ref|YP_001541109.1| - 0.027 14.3 5.5 1.4 8.7 0.1 2.5 2 0 0 2 2 2 0 Ligand-gated ion channel Macro PF01661.21 gi|159041858|ref|YP_001541110.1| - 5e-37 126.5 0.0 6.9e-37 126.1 0.0 1.2 1 0 0 1 1 1 1 Macro domain CBS PF00571.28 gi|159041859|ref|YP_001541111.1| - 3e-47 158.9 13.0 4e-16 59.2 0.1 4.6 5 0 0 5 5 5 4 CBS domain Ribosomal_S30AE PF02482.19 gi|159041859|ref|YP_001541111.1| - 4.9e-08 33.7 3.6 1.1e-07 32.5 3.6 1.6 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein SMC_Nse1 PF07574.13 gi|159041859|ref|YP_001541111.1| - 0.0037 17.2 0.5 0.0058 16.5 0.5 1.2 1 0 0 1 1 1 1 Nse1 non-SMC component of SMC5-6 complex LeuA_dimer PF08502.10 gi|159041859|ref|YP_001541111.1| - 0.082 12.8 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain PRC PF05239.16 gi|159041859|ref|YP_001541111.1| - 0.25 11.5 7.3 3.2 7.9 0.0 4.0 3 1 2 5 5 5 0 PRC-barrel domain CPSase_sm_chain PF00988.22 gi|159041860|ref|YP_001541112.1| - 3.9e-50 169.0 0.0 5.7e-50 168.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|159041860|ref|YP_001541112.1| - 6.6e-37 127.1 0.0 8.9e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|159041860|ref|YP_001541112.1| - 4.7e-09 36.3 0.0 1.7e-06 27.9 0.0 2.6 1 1 1 2 2 2 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|159041861|ref|YP_001541113.1| - 1.2e-92 309.2 0.0 2.4e-61 206.9 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|159041861|ref|YP_001541113.1| - 3.9e-16 59.5 0.0 9.5e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|159041861|ref|YP_001541113.1| - 2.6e-14 53.2 0.0 1.2e-07 31.5 0.1 2.5 3 0 0 3 3 3 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|159041861|ref|YP_001541113.1| - 2.6e-13 49.8 0.1 1.5e-05 24.7 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|159041861|ref|YP_001541113.1| - 5.5e-12 45.6 0.1 1.9e-05 24.3 0.1 2.5 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|159041861|ref|YP_001541113.1| - 1.4e-09 38.2 0.5 3.2e-05 24.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|159041861|ref|YP_001541113.1| - 3e-07 30.2 0.0 0.056 13.0 0.0 4.2 4 1 0 4 4 4 2 RimK-like ATP-grasp domain MerR_1 PF13411.6 gi|159041861|ref|YP_001541113.1| - 0.00018 21.6 0.0 0.015 15.3 0.0 3.4 3 0 0 3 3 3 1 MerR HTH family regulatory protein GARS_A PF01071.19 gi|159041861|ref|YP_001541113.1| - 0.003 17.3 0.0 1.4 8.6 0.0 2.8 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|159041861|ref|YP_001541113.1| - 0.031 13.7 0.0 0.56 9.6 0.0 2.8 2 1 0 2 2 2 0 ATP-grasp domain RimK PF08443.11 gi|159041862|ref|YP_001541114.1| - 1.5e-27 96.4 0.0 3.4e-27 95.3 0.0 1.5 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|159041862|ref|YP_001541114.1| - 8.8e-10 38.3 0.1 1.9e-09 37.2 0.0 1.5 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|159041862|ref|YP_001541114.1| - 9.3e-08 32.3 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|159041862|ref|YP_001541114.1| - 0.00011 21.5 0.0 0.41 9.9 0.0 3.2 1 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|159041862|ref|YP_001541114.1| - 0.0035 16.9 0.0 0.0083 15.7 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus R2K_2 PF18299.1 gi|159041862|ref|YP_001541114.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 R2K_3 PF14243.6 gi|159041862|ref|YP_001541114.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 RimK PF08443.11 gi|159041863|ref|YP_001541115.1| - 1.6e-36 125.7 0.0 2.1e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|159041863|ref|YP_001541115.1| - 1.2e-08 35.1 0.0 1.8e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|159041863|ref|YP_001541115.1| - 4.3e-06 26.2 0.0 6.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|159041863|ref|YP_001541115.1| - 0.00071 18.9 0.0 0.54 9.5 0.0 2.3 1 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp Zn-ribbon_8 PF09723.10 gi|159041864|ref|YP_001541116.1| - 9.4e-06 25.6 0.2 1.7e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|159041864|ref|YP_001541116.1| - 2e-05 24.6 0.7 2.5e-05 24.3 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|159041864|ref|YP_001541116.1| - 8.3e-05 22.4 1.9 0.37 10.7 0.0 2.7 3 0 0 3 3 3 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|159041864|ref|YP_001541116.1| - 0.00034 20.1 3.8 0.00034 20.1 3.8 1.8 2 1 0 2 2 1 1 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|159041864|ref|YP_001541116.1| - 0.00081 19.1 1.4 0.1 12.4 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|159041864|ref|YP_001541116.1| - 0.00098 19.0 3.8 0.0014 18.5 1.4 2.1 2 1 0 2 2 2 1 Prokaryotic RING finger family 1 DUF2256 PF10013.9 gi|159041864|ref|YP_001541116.1| - 0.0046 17.1 2.5 0.76 9.9 0.0 3.0 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2256) DZR PF12773.7 gi|159041864|ref|YP_001541116.1| - 0.01 15.9 2.1 0.02 14.9 2.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|159041864|ref|YP_001541116.1| - 0.022 15.2 0.5 0.96 9.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-CHCC PF10276.9 gi|159041864|ref|YP_001541116.1| - 0.027 14.5 0.3 5.4 7.2 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2_3 PF13878.6 gi|159041864|ref|YP_001541116.1| - 0.028 14.3 6.9 0.1 12.5 0.1 2.7 2 1 1 3 3 3 0 zinc-finger of acetyl-transferase ESCO zf-CSL PF05207.13 gi|159041864|ref|YP_001541116.1| - 0.032 14.0 0.9 0.071 12.8 0.3 1.8 1 1 0 2 2 2 0 CSL zinc finger zf-Sec23_Sec24 PF04810.15 gi|159041864|ref|YP_001541116.1| - 0.041 13.9 1.5 1.2 9.3 0.6 2.6 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger UPF0547 PF10571.9 gi|159041864|ref|YP_001541116.1| - 0.047 13.8 1.3 6.9 6.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|159041864|ref|YP_001541116.1| - 0.06 12.8 1.2 1.2 8.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2072 PF09845.9 gi|159041864|ref|YP_001541116.1| - 0.081 13.2 0.5 0.12 12.6 0.5 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein CpXC PF14353.6 gi|159041864|ref|YP_001541116.1| - 0.12 12.5 2.0 1.5 8.9 0.1 2.2 1 1 1 2 2 2 0 CpXC protein Elf1 PF05129.13 gi|159041864|ref|YP_001541116.1| - 0.14 12.2 4.9 21 5.3 0.1 3.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-HYPF PF07503.12 gi|159041864|ref|YP_001541116.1| - 0.24 11.2 3.9 2.8 7.8 3.9 2.2 1 1 0 1 1 1 0 HypF finger zf-C2H2 PF00096.26 gi|159041864|ref|YP_001541116.1| - 0.36 11.4 1.7 20 5.9 0.1 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF983 PF06170.12 gi|159041864|ref|YP_001541116.1| - 0.97 9.9 3.7 13 6.3 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF983) zf-trcl PF13451.6 gi|159041864|ref|YP_001541116.1| - 1.1 9.2 4.5 7 6.6 0.3 2.9 3 0 0 3 3 3 0 Probable zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|159041864|ref|YP_001541116.1| - 1.2 10.2 4.1 24 6.1 0.1 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger Vps36-NZF-N PF16988.5 gi|159041864|ref|YP_001541116.1| - 1.5 8.3 5.6 0.51 9.8 0.7 2.1 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-HIT PF04438.16 gi|159041864|ref|YP_001541116.1| - 2.1 8.3 10.2 13 5.8 1.2 3.1 3 0 0 3 3 3 0 HIT zinc finger AA_kinase PF00696.28 gi|159041865|ref|YP_001541117.1| - 2.7e-33 115.6 4.2 3.1e-33 115.4 4.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|159041866|ref|YP_001541118.1| - 1.7e-30 106.0 0.0 2.9e-30 105.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|159041866|ref|YP_001541118.1| - 4.8e-14 52.8 0.0 9.8e-14 51.8 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|159041866|ref|YP_001541118.1| - 0.0021 17.6 0.0 0.0048 16.4 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family DUF2192 PF09958.9 gi|159041867|ref|YP_001541119.1| - 2.7e-78 262.6 2.8 3.1e-78 262.4 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) DEAD PF00270.29 gi|159041868|ref|YP_001541120.1| - 5.1e-20 72.0 0.0 1e-19 71.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|159041868|ref|YP_001541120.1| - 1.1e-14 54.7 0.0 3.4e-14 53.1 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|159041868|ref|YP_001541120.1| - 5.5e-13 49.5 0.1 1.2e-12 48.4 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) SecA_DEAD PF07517.14 gi|159041868|ref|YP_001541120.1| - 9.6e-05 21.8 0.0 0.00019 20.8 0.0 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain ResIII PF04851.15 gi|159041868|ref|YP_001541120.1| - 0.00078 19.5 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Flavi_DEAD PF07652.14 gi|159041868|ref|YP_001541120.1| - 0.051 13.5 0.4 0.33 10.9 0.0 2.6 3 0 0 3 3 3 0 Flavivirus DEAD domain Glu_dehyd_C PF16912.5 gi|159041869|ref|YP_001541121.1| - 2.5e-70 236.3 0.0 3.2e-70 235.9 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|159041869|ref|YP_001541121.1| - 1e-14 54.3 1.2 1.3e-14 53.9 0.4 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159041869|ref|YP_001541121.1| - 1.3e-07 31.7 0.1 2.5e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|159041869|ref|YP_001541121.1| - 0.039 14.0 0.0 0.069 13.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Choline_kin_N PF04428.14 gi|159041869|ref|YP_001541121.1| - 0.13 11.9 0.0 0.4 10.4 0.0 1.8 2 0 0 2 2 2 0 Choline kinase N terminus FAD_binding_3 PF01494.19 gi|159041869|ref|YP_001541121.1| - 0.22 10.8 0.1 0.33 10.2 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain NOG1_N PF17835.1 gi|159041871|ref|YP_001541123.1| - 4.7e-27 94.9 0.6 8.1e-27 94.2 0.1 1.6 2 0 0 2 2 2 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|159041871|ref|YP_001541123.1| - 8.2e-22 76.8 0.5 1.5e-21 75.9 0.5 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|159041871|ref|YP_001541123.1| - 1.7e-18 66.7 0.0 3.2e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|159041871|ref|YP_001541123.1| - 8.7e-15 54.6 0.0 1.5e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|159041871|ref|YP_001541123.1| - 1.6e-06 28.1 0.3 0.00083 19.3 0.0 2.8 2 1 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|159041871|ref|YP_001541123.1| - 1.7e-06 27.8 0.1 9.4e-05 22.2 0.0 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|159041871|ref|YP_001541123.1| - 0.00017 21.1 1.0 0.00033 20.1 0.1 1.9 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|159041871|ref|YP_001541123.1| - 0.00021 20.9 0.1 0.0073 15.9 0.1 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|159041871|ref|YP_001541123.1| - 0.00027 20.6 0.1 0.0012 18.5 0.1 1.9 1 1 0 1 1 1 1 Ras family cobW PF02492.19 gi|159041871|ref|YP_001541123.1| - 0.00096 18.8 0.1 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|159041871|ref|YP_001541123.1| - 0.0025 18.2 0.8 0.21 11.9 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain Septin PF00735.18 gi|159041871|ref|YP_001541123.1| - 0.01 15.2 0.6 0.035 13.4 0.1 2.0 1 1 1 2 2 2 0 Septin AIG1 PF04548.16 gi|159041871|ref|YP_001541123.1| - 0.025 13.9 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family BMFP PF04380.13 gi|159041871|ref|YP_001541123.1| - 0.027 14.9 0.1 0.079 13.5 0.1 1.7 1 0 0 1 1 1 0 Membrane fusogenic activity MMR_HSR1_Xtn PF16897.5 gi|159041871|ref|YP_001541123.1| - 0.04 13.9 0.1 0.2 11.7 0.1 2.1 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain Arf PF00025.21 gi|159041871|ref|YP_001541123.1| - 0.067 12.6 0.1 0.6 9.5 0.1 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family ChAPs PF09295.10 gi|159041871|ref|YP_001541123.1| - 0.069 12.2 0.3 1.2 8.1 0.1 2.0 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) Proteasome PF00227.26 gi|159041872|ref|YP_001541124.1| - 1.8e-49 167.8 0.5 2.2e-49 167.5 0.5 1.0 1 0 0 1 1 1 1 Proteasome subunit TatD_DNase PF01026.21 gi|159041873|ref|YP_001541125.1| - 5.7e-48 163.5 0.0 6.6e-48 163.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|159041873|ref|YP_001541125.1| - 0.095 12.5 0.0 0.19 11.5 0.0 1.5 1 1 0 1 1 1 0 Amidohydrolase TRM PF02005.16 gi|159041874|ref|YP_001541126.1| - 2.4e-76 257.4 0.0 2.9e-76 257.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|159041874|ref|YP_001541126.1| - 2.8e-07 30.3 0.5 4.1e-07 29.7 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|159041874|ref|YP_001541126.1| - 4.1e-06 26.7 0.0 6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|159041874|ref|YP_001541126.1| - 0.00015 21.3 0.0 0.00027 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|159041874|ref|YP_001541126.1| - 0.00031 20.7 0.0 0.00069 19.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 gi|159041874|ref|YP_001541126.1| - 0.00037 20.1 0.0 0.00059 19.4 0.0 1.3 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_15 PF09445.10 gi|159041874|ref|YP_001541126.1| - 0.00051 19.6 0.0 0.00077 19.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|159041874|ref|YP_001541126.1| - 0.0031 18.2 0.0 0.0068 17.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|159041874|ref|YP_001541126.1| - 0.0034 17.1 0.6 0.0079 15.9 0.6 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|159041874|ref|YP_001541126.1| - 0.031 13.9 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|159041874|ref|YP_001541126.1| - 0.031 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase AviRa PF11599.8 gi|159041874|ref|YP_001541126.1| - 0.086 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Fibrillarin PF01269.17 gi|159041875|ref|YP_001541127.1| - 6.5e-100 332.9 0.0 7.3e-100 332.7 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|159041875|ref|YP_001541127.1| - 1.4e-05 24.9 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|159041875|ref|YP_001541127.1| - 0.0059 16.3 0.0 0.0087 15.7 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F DUF1611_N PF17396.2 gi|159041875|ref|YP_001541127.1| - 0.078 13.2 0.0 9.4 6.6 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain GCD14 PF08704.10 gi|159041875|ref|YP_001541127.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Glyco_hydro_3 PF00933.21 gi|159041876|ref|YP_001541128.1| - 6.8e-60 203.1 0.0 1.1e-59 202.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|159041876|ref|YP_001541128.1| - 8.7e-45 153.2 0.0 2.2e-44 151.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|159041876|ref|YP_001541128.1| - 2e-24 85.4 0.0 4.8e-24 84.3 0.0 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain DUF123 PF01986.16 gi|159041877|ref|YP_001541129.1| - 3.1e-24 85.3 0.0 4.1e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 TP_methylase PF00590.20 gi|159041878|ref|YP_001541130.1| - 7.8e-46 156.7 0.2 9e-46 156.5 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SBP_bac_5 PF00496.22 gi|159041879|ref|YP_001541131.1| - 7.1e-34 117.4 10.2 1.4e-33 116.4 10.2 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041879|ref|YP_001541131.1| - 0.036 13.9 12.0 0.054 13.4 12.0 1.2 1 0 0 1 1 1 0 Rifin DUF5336 PF17270.2 gi|159041879|ref|YP_001541131.1| - 1.2 8.7 9.0 2.3 7.8 9.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5336) Stevor PF17410.2 gi|159041879|ref|YP_001541131.1| - 5.3 6.5 15.7 11 5.4 15.7 1.5 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Aminotran_1_2 PF00155.21 gi|159041880|ref|YP_001541132.1| - 0.0028 16.9 0.0 0.0032 16.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 gi|159041881|ref|YP_001541133.1| - 5.3e-16 59.5 0.0 1.6e-15 57.9 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|159041881|ref|YP_001541133.1| - 0.028 14.5 0.0 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 B12 binding domain Radical_SAM_C PF16199.5 gi|159041882|ref|YP_001541134.1| - 2.6e-24 85.1 0.1 4.7e-24 84.2 0.1 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|159041882|ref|YP_001541134.1| - 1.7e-20 74.1 0.0 1e-19 71.5 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|159041882|ref|YP_001541134.1| - 3.2e-07 30.6 0.2 7.6e-07 29.4 0.2 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|159041882|ref|YP_001541134.1| - 4.8e-06 26.5 0.0 1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|159041882|ref|YP_001541134.1| - 0.013 15.9 0.2 0.029 14.8 0.2 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain RNase_P_p30 PF01876.16 gi|159041883|ref|YP_001541135.1| - 0.031 13.7 0.0 0.35 10.3 0.0 2.0 1 1 0 1 1 1 0 RNase P subunit p30 NTP_transf_2 PF01909.23 gi|159041884|ref|YP_001541136.1| - 1.7e-07 31.4 0.0 2e-07 31.2 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|159041884|ref|YP_001541136.1| - 6.5e-07 29.3 0.0 1.1e-06 28.6 0.0 1.5 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|159041884|ref|YP_001541136.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|159041885|ref|YP_001541137.1| - 7e-30 103.6 0.2 8e-30 103.4 0.2 1.0 1 0 0 1 1 1 1 HEPN domain DrsE_2 PF13686.6 gi|159041886|ref|YP_001541138.1| - 1e-09 38.5 0.1 1.2e-07 31.8 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|159041886|ref|YP_001541138.1| - 5.2e-09 36.5 0.0 5.8e-09 36.3 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family BPD_transp_1 PF00528.22 gi|159041887|ref|YP_001541139.1| - 2.1e-43 148.2 12.8 2.1e-43 148.2 12.8 2.7 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Ribonuc_red_sm PF00268.21 gi|159041887|ref|YP_001541139.1| - 0.15 11.5 0.1 0.42 10.0 0.0 1.6 2 0 0 2 2 2 0 Ribonucleotide reductase, small chain UCR_UQCRX_QCR9 PF05365.12 gi|159041887|ref|YP_001541139.1| - 0.49 10.4 0.1 0.49 10.4 0.1 2.7 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like BPD_transp_1 PF00528.22 gi|159041888|ref|YP_001541140.1| - 9.7e-28 97.2 12.3 9.7e-28 97.2 12.3 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|159041888|ref|YP_001541140.1| - 0.0043 17.0 0.3 0.0043 17.0 0.3 3.4 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C bPH_2 PF03703.14 gi|159041889|ref|YP_001541141.1| - 6.9e-07 29.4 0.1 1.1e-06 28.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain ABC_tran PF00005.27 gi|159041890|ref|YP_001541142.1| - 5.5e-33 114.4 0.0 7.6e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159041890|ref|YP_001541142.1| - 9.3e-20 70.9 0.0 1.7e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|159041890|ref|YP_001541142.1| - 1.7e-07 31.4 2.7 0.00031 20.6 0.2 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|159041890|ref|YP_001541142.1| - 5.7e-07 29.9 0.3 2.3e-06 27.9 0.3 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|159041890|ref|YP_001541142.1| - 2.5e-05 23.8 0.4 0.00031 20.2 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|159041890|ref|YP_001541142.1| - 0.00047 19.8 0.1 0.00083 19.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|159041890|ref|YP_001541142.1| - 0.001 17.8 2.1 0.27 9.8 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|159041890|ref|YP_001541142.1| - 0.0047 16.5 0.4 0.024 14.2 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159041890|ref|YP_001541142.1| - 0.0051 17.2 0.3 0.0092 16.4 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|159041890|ref|YP_001541142.1| - 0.017 15.3 0.1 0.19 12.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|159041890|ref|YP_001541142.1| - 0.032 13.6 0.0 0.075 12.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|159041890|ref|YP_001541142.1| - 0.048 14.1 0.0 0.95 9.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|159041890|ref|YP_001541142.1| - 0.057 13.1 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|159041890|ref|YP_001541142.1| - 0.072 12.8 0.1 13 5.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_15 PF13175.6 gi|159041890|ref|YP_001541142.1| - 0.076 12.7 0.1 0.5 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|159041890|ref|YP_001541142.1| - 0.095 12.7 0.1 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|159041890|ref|YP_001541142.1| - 0.2 12.1 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|159041890|ref|YP_001541142.1| - 0.2 11.3 0.2 0.64 9.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|159041890|ref|YP_001541142.1| - 0.34 10.8 1.7 0.9 9.4 1.7 1.9 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|159041891|ref|YP_001541143.1| - 3.2e-27 95.7 0.0 4.5e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159041891|ref|YP_001541143.1| - 2.2e-20 72.9 0.0 3.9e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|159041891|ref|YP_001541143.1| - 8.5e-09 35.6 0.9 0.00012 22.1 0.1 2.8 1 1 2 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159041891|ref|YP_001541143.1| - 1.5e-06 27.8 0.1 8.4e-06 25.4 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|159041891|ref|YP_001541143.1| - 5.6e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|159041891|ref|YP_001541143.1| - 5.7e-06 26.6 0.1 0.00019 21.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|159041891|ref|YP_001541143.1| - 0.00043 19.7 0.1 0.024 14.1 0.2 2.3 2 0 0 2 2 2 1 Bacterial TniB protein IstB_IS21 PF01695.17 gi|159041891|ref|YP_001541143.1| - 0.00058 19.6 0.1 0.0099 15.6 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|159041891|ref|YP_001541143.1| - 0.00099 19.5 0.0 0.0015 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|159041891|ref|YP_001541143.1| - 0.0031 16.9 0.1 1.5 8.1 0.0 2.1 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|159041891|ref|YP_001541143.1| - 0.0071 15.9 0.1 0.021 14.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|159041891|ref|YP_001541143.1| - 0.0085 15.3 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain RsgA_GTPase PF03193.16 gi|159041891|ref|YP_001541143.1| - 0.02 14.8 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|159041891|ref|YP_001541143.1| - 0.025 14.3 0.0 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|159041891|ref|YP_001541143.1| - 0.047 14.2 0.0 0.1 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|159041891|ref|YP_001541143.1| - 0.048 13.0 0.1 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|159041891|ref|YP_001541143.1| - 0.051 13.5 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|159041891|ref|YP_001541143.1| - 0.077 13.1 0.1 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|159041891|ref|YP_001541143.1| - 0.077 12.7 0.1 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|159041891|ref|YP_001541143.1| - 0.089 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|159041891|ref|YP_001541143.1| - 0.094 13.1 0.0 2.5 8.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|159041891|ref|YP_001541143.1| - 0.1 11.9 0.1 0.23 10.8 0.1 1.5 1 0 0 1 1 1 0 KaiC PRK PF00485.18 gi|159041891|ref|YP_001541143.1| - 0.18 11.5 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|159041891|ref|YP_001541143.1| - 0.19 10.9 0.0 0.54 9.4 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|159041891|ref|YP_001541143.1| - 0.2 12.2 0.0 0.37 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SBP_bac_5 PF00496.22 gi|159041892|ref|YP_001541144.1| - 2.6e-57 194.5 4.5 2.6e-57 194.5 4.5 2.8 3 0 0 3 3 3 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.17 gi|159041892|ref|YP_001541144.1| - 0.0016 18.4 38.4 0.0016 18.4 38.4 2.8 3 0 0 3 3 3 1 Mucin-like glycoprotein SpoIIIAH PF12685.7 gi|159041892|ref|YP_001541144.1| - 0.06 13.2 5.2 0.098 12.5 5.2 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Ribosomal_L14 PF00238.19 gi|159041894|ref|YP_001541146.1| - 4.4e-36 123.6 2.4 5e-36 123.5 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|159041894|ref|YP_001541146.1| - 0.034 14.4 0.2 0.082 13.2 0.0 1.7 2 0 0 2 2 2 0 PAS fold Formyl_trans_C PF02911.18 gi|159041894|ref|YP_001541146.1| - 0.092 13.0 0.1 0.13 12.6 0.1 1.2 1 0 0 1 1 1 0 Formyl transferase, C-terminal domain NAD_kinase PF01513.21 gi|159041895|ref|YP_001541147.1| - 4.2e-22 78.7 2.6 1.2e-21 77.2 2.6 1.6 1 1 0 1 1 1 1 ATP-NAD kinase HTH_24 PF13412.6 gi|159041895|ref|YP_001541147.1| - 5.1e-05 22.8 0.6 0.00014 21.4 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|159041895|ref|YP_001541147.1| - 0.0001 22.1 0.1 0.00036 20.3 0.0 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|159041895|ref|YP_001541147.1| - 0.00013 21.8 0.1 0.00034 20.4 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|159041895|ref|YP_001541147.1| - 0.00013 21.7 0.0 0.00081 19.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|159041895|ref|YP_001541147.1| - 0.01 15.9 0.1 0.028 14.5 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|159041895|ref|YP_001541147.1| - 0.016 15.1 0.1 0.057 13.4 0.1 2.0 2 0 0 2 2 2 0 MarR family HTH_9 PF08221.11 gi|159041895|ref|YP_001541147.1| - 0.017 15.2 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phosphorylase PF00343.20 gi|159041896|ref|YP_001541148.1| - 2.6e-14 52.5 0.0 1.3e-13 50.2 0.0 2.0 1 1 1 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|159041896|ref|YP_001541148.1| - 3.6e-07 29.9 0.0 7.8e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|159041896|ref|YP_001541148.1| - 1.1e-06 28.5 0.0 5.3e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.6 gi|159041896|ref|YP_001541148.1| - 2e-06 27.9 0.2 4.8e-06 26.7 0.2 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|159041896|ref|YP_001541148.1| - 0.00078 19.9 0.0 0.0019 18.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 RrnaAD PF00398.20 gi|159041898|ref|YP_001541150.1| - 2.3e-38 131.8 0.0 2.9e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0146 PF03686.13 gi|159041898|ref|YP_001541150.1| - 2.3e-05 24.2 0.1 5.5e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) Methyltransf_25 PF13649.6 gi|159041898|ref|YP_001541150.1| - 0.00048 20.8 0.0 0.00084 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|159041898|ref|YP_001541150.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|159041898|ref|YP_001541150.1| - 0.015 15.9 0.0 0.032 14.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159041898|ref|YP_001541150.1| - 0.035 13.9 0.0 0.061 13.2 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|159041898|ref|YP_001541150.1| - 0.068 13.9 0.0 0.12 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HD_3 PF13023.6 gi|159041899|ref|YP_001541151.1| - 1.3e-13 51.2 0.0 8.3e-13 48.6 0.0 1.9 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|159041899|ref|YP_001541151.1| - 2.8e-09 37.0 0.0 3.8e-08 33.3 0.0 2.2 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|159041899|ref|YP_001541151.1| - 1.1e-07 32.1 0.1 2.6e-07 30.9 0.1 1.6 1 1 0 1 1 1 1 HD domain DUF3336 PF11815.8 gi|159041899|ref|YP_001541151.1| - 0.031 14.0 0.1 0.055 13.2 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3336) HDOD PF08668.12 gi|159041899|ref|YP_001541151.1| - 0.049 13.1 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 HDOD domain Isochorismatase PF00857.20 gi|159041900|ref|YP_001541152.1| - 1.1e-41 142.9 0.0 1.3e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF2626 PF11117.8 gi|159041901|ref|YP_001541153.1| - 1.5 9.6 9.4 0.83 10.4 3.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2626) ABC_tran PF00005.27 gi|159041902|ref|YP_001541154.1| - 1.1e-41 142.5 0.5 1.8e-19 70.6 0.1 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|159041902|ref|YP_001541154.1| - 1.4e-19 71.0 5.5 1.7e-05 24.8 0.1 4.1 3 1 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|159041902|ref|YP_001541154.1| - 3.2e-09 36.4 3.4 0.0014 18.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|159041902|ref|YP_001541154.1| - 4.2e-08 33.8 2.8 0.0074 16.7 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|159041902|ref|YP_001541154.1| - 5.4e-08 32.5 11.7 0.038 13.4 0.3 4.1 3 1 1 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|159041902|ref|YP_001541154.1| - 1.6e-07 31.2 1.9 0.0082 15.9 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|159041902|ref|YP_001541154.1| - 2.2e-07 31.6 5.0 0.0056 17.2 0.2 2.5 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 gi|159041902|ref|YP_001541154.1| - 2.4e-07 31.1 4.7 0.0038 17.5 1.9 3.3 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|159041902|ref|YP_001541154.1| - 4e-07 30.1 0.3 0.00015 21.6 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 gi|159041902|ref|YP_001541154.1| - 5.9e-06 25.5 0.9 0.043 12.9 0.0 2.5 2 1 0 2 2 2 2 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|159041902|ref|YP_001541154.1| - 1.6e-05 24.9 1.1 0.21 11.7 0.0 3.0 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|159041902|ref|YP_001541154.1| - 1.8e-05 24.9 0.4 0.18 11.9 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA PF00004.29 gi|159041902|ref|YP_001541154.1| - 2.1e-05 24.9 2.6 0.26 11.7 0.2 3.4 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|159041902|ref|YP_001541154.1| - 2.3e-05 24.4 1.7 0.18 11.7 0.0 2.8 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|159041902|ref|YP_001541154.1| - 4.3e-05 23.2 1.0 0.053 13.1 0.1 3.2 3 1 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|159041902|ref|YP_001541154.1| - 7.1e-05 22.8 1.0 0.29 11.0 0.2 2.8 2 1 0 2 2 2 2 NACHT domain AAA_18 PF13238.6 gi|159041902|ref|YP_001541154.1| - 0.00011 22.8 0.4 0.64 10.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain PduV-EutP PF10662.9 gi|159041902|ref|YP_001541154.1| - 0.00016 21.4 0.6 0.31 10.8 0.1 2.8 3 0 0 3 3 2 2 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.23 gi|159041902|ref|YP_001541154.1| - 0.00021 21.4 0.8 0.1 12.6 0.1 2.5 2 1 0 2 2 2 1 Dynamin family AAA_5 PF07728.14 gi|159041902|ref|YP_001541154.1| - 0.00037 20.5 1.3 0.93 9.5 0.0 3.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|159041902|ref|YP_001541154.1| - 0.00096 18.7 2.1 0.49 9.9 0.1 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|159041902|ref|YP_001541154.1| - 0.001 18.9 0.6 0.27 11.0 0.6 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.18 gi|159041902|ref|YP_001541154.1| - 0.0011 18.4 1.5 0.29 10.4 0.5 2.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family DLIC PF05783.11 gi|159041902|ref|YP_001541154.1| - 0.0017 17.3 1.3 0.23 10.3 0.5 2.1 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) Mg_chelatase PF01078.21 gi|159041902|ref|YP_001541154.1| - 0.0027 17.1 0.5 0.74 9.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Roc PF08477.13 gi|159041902|ref|YP_001541154.1| - 0.0036 17.5 1.0 1.8 8.8 0.3 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase DEAD PF00270.29 gi|159041902|ref|YP_001541154.1| - 0.0057 16.4 5.4 5.5 6.7 0.1 3.4 3 1 0 3 3 3 0 DEAD/DEAH box helicase G-alpha PF00503.20 gi|159041902|ref|YP_001541154.1| - 0.008 15.4 0.2 0.5 9.5 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit Zeta_toxin PF06414.12 gi|159041902|ref|YP_001541154.1| - 0.0095 15.2 1.2 5.7 6.2 0.2 3.0 3 0 0 3 3 3 0 Zeta toxin Adeno_IVa2 PF02456.15 gi|159041902|ref|YP_001541154.1| - 0.011 14.6 0.6 1.5 7.5 0.1 2.6 3 0 0 3 3 3 0 Adenovirus IVa2 protein TsaE PF02367.17 gi|159041902|ref|YP_001541154.1| - 0.016 15.2 1.8 0.56 10.2 0.8 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|159041902|ref|YP_001541154.1| - 0.016 15.5 0.3 6.6 7.2 0.0 2.8 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|159041902|ref|YP_001541154.1| - 0.024 14.9 3.0 2.8 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|159041902|ref|YP_001541154.1| - 0.024 14.1 4.9 8.2 5.8 0.1 3.2 3 0 0 3 3 3 0 Poxvirus A32 protein AAA_24 PF13479.6 gi|159041902|ref|YP_001541154.1| - 0.025 14.3 2.5 3.2 7.4 0.3 2.5 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|159041902|ref|YP_001541154.1| - 0.042 13.4 0.1 8.6 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|159041902|ref|YP_001541154.1| - 0.044 12.7 2.3 1.4 7.7 0.1 2.3 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.6 gi|159041902|ref|YP_001541154.1| - 0.049 13.9 0.0 2.4 8.5 0.0 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF815 PF05673.13 gi|159041902|ref|YP_001541154.1| - 0.052 12.7 1.4 6.4 5.9 0.3 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF815) PhoH PF02562.16 gi|159041902|ref|YP_001541154.1| - 0.059 12.8 0.8 7.7 5.9 0.4 2.4 2 0 0 2 2 2 0 PhoH-like protein TniB PF05621.11 gi|159041902|ref|YP_001541154.1| - 0.063 12.7 4.4 22 4.4 0.0 4.0 3 1 0 4 4 4 0 Bacterial TniB protein cobW PF02492.19 gi|159041902|ref|YP_001541154.1| - 0.064 12.8 4.3 2.2 7.8 1.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|159041902|ref|YP_001541154.1| - 0.064 13.0 6.2 18 5.0 0.0 4.1 4 0 0 4 4 4 0 IstB-like ATP binding protein PIF1 PF05970.14 gi|159041902|ref|YP_001541154.1| - 0.077 12.2 0.6 8.9 5.4 0.0 2.4 2 0 0 2 2 2 0 PIF1-like helicase ATPase_2 PF01637.18 gi|159041902|ref|YP_001541154.1| - 0.092 12.6 1.5 6.9 6.5 0.2 2.6 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea SRPRB PF09439.10 gi|159041902|ref|YP_001541154.1| - 0.11 12.0 0.7 4.3 6.7 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit NTPase_1 PF03266.15 gi|159041902|ref|YP_001541154.1| - 0.13 12.2 9.6 2.7 7.9 0.1 3.6 4 1 0 4 4 3 0 NTPase AAA_19 PF13245.6 gi|159041902|ref|YP_001541154.1| - 0.14 12.5 8.9 2.1 8.7 0.2 3.0 3 1 0 3 3 3 0 AAA domain MobB PF03205.14 gi|159041902|ref|YP_001541154.1| - 0.16 11.9 5.6 1.1 9.2 0.3 3.2 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.15 gi|159041902|ref|YP_001541154.1| - 0.21 11.5 0.3 15 5.5 0.0 2.6 3 0 0 3 3 2 0 Rad17 P-loop domain Sigma54_activat PF00158.26 gi|159041902|ref|YP_001541154.1| - 0.22 11.2 0.7 26 4.4 0.2 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_13 PF13166.6 gi|159041902|ref|YP_001541154.1| - 0.58 8.7 3.1 17 3.9 0.3 3.4 3 1 0 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|159041902|ref|YP_001541154.1| - 0.69 10.0 3.7 16 5.6 0.1 3.6 3 1 0 3 3 2 0 AAA domain DUF87 PF01935.17 gi|159041902|ref|YP_001541154.1| - 0.89 9.6 6.9 2.1 8.4 1.7 2.8 2 0 0 2 2 2 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|159041902|ref|YP_001541154.1| - 1.3 8.2 4.1 8.9 5.4 0.1 2.5 2 1 0 2 2 2 0 NB-ARC domain SRP54 PF00448.22 gi|159041902|ref|YP_001541154.1| - 1.9 8.1 5.4 18 4.9 0.0 2.9 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain ECF_trnsprt PF12822.7 gi|159041903|ref|YP_001541155.1| - 1.8e-06 28.2 20.1 2.3e-06 27.8 20.1 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ECF-ribofla_trS PF07155.12 gi|159041903|ref|YP_001541155.1| - 0.018 15.0 16.7 0.18 11.8 16.7 2.0 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component NTP_transferase PF00483.23 gi|159041905|ref|YP_001541157.1| - 5.1e-20 72.1 0.0 7e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|159041905|ref|YP_001541157.1| - 6.7e-06 26.5 0.0 8.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain DNA_pol_B PF00136.21 gi|159041906|ref|YP_001541158.1| - 1.1e-73 248.5 0.1 1.8e-73 247.8 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|159041906|ref|YP_001541158.1| - 7.1e-40 137.2 0.2 1.4e-38 132.9 0.2 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|159041906|ref|YP_001541158.1| - 1.5e-11 44.4 0.0 2.9e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|159041906|ref|YP_001541158.1| - 2.2e-09 37.5 0.0 5.6e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|159041906|ref|YP_001541158.1| - 0.063 12.1 0.2 0.13 11.1 0.2 1.4 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral Thioredoxin_3 PF13192.6 gi|159041907|ref|YP_001541159.1| - 7.1e-17 61.2 0.2 1.2e-11 44.5 0.4 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|159041907|ref|YP_001541159.1| - 4.6e-08 33.0 0.0 1.5e-05 24.9 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 gi|159041907|ref|YP_001541159.1| - 1.8e-05 24.9 0.9 0.0054 16.9 0.3 3.1 3 0 0 3 3 3 2 Glutaredoxin TraF PF13728.6 gi|159041907|ref|YP_001541159.1| - 0.0027 17.6 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|159041907|ref|YP_001541159.1| - 0.055 13.9 0.9 0.38 11.2 0.9 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain PDT PF00800.18 gi|159041908|ref|YP_001541160.1| - 3e-45 154.3 0.0 4.3e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|159041908|ref|YP_001541160.1| - 8.9e-07 28.6 0.0 1.9e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 ACT domain MCC-bdg_PDZ PF10506.9 gi|159041908|ref|YP_001541160.1| - 0.081 12.9 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome FaeA PF04703.12 gi|159041909|ref|YP_001541161.1| - 6.4e-08 32.9 0.1 8.1e-08 32.5 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.6 gi|159041909|ref|YP_001541161.1| - 5.2e-06 25.9 0.4 7.4e-06 25.4 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|159041909|ref|YP_001541161.1| - 2.7e-05 24.0 0.0 3.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|159041909|ref|YP_001541161.1| - 0.00023 20.9 0.0 0.00033 20.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF977 PF06163.11 gi|159041909|ref|YP_001541161.1| - 0.0033 17.4 0.2 0.0033 17.4 0.2 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) TrmB PF01978.19 gi|159041909|ref|YP_001541161.1| - 0.0042 16.9 0.1 0.007 16.2 0.0 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 gi|159041909|ref|YP_001541161.1| - 0.0043 17.2 0.1 0.0056 16.8 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_DeoR PF08220.12 gi|159041909|ref|YP_001541161.1| - 0.0055 16.4 0.2 0.015 15.1 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|159041909|ref|YP_001541161.1| - 0.0057 16.6 0.1 0.0079 16.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|159041909|ref|YP_001541161.1| - 0.0057 17.1 0.1 0.0084 16.6 0.1 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain PheRS_DBD1 PF18552.1 gi|159041909|ref|YP_001541161.1| - 0.008 15.9 0.1 0.017 14.9 0.1 1.6 1 1 0 1 1 1 1 PheRS DNA binding domain 1 HTH_AsnC-type PF13404.6 gi|159041909|ref|YP_001541161.1| - 0.0088 15.9 0.5 4.5 7.2 0.0 2.2 1 1 1 2 2 2 2 AsnC-type helix-turn-helix domain HTH_9 PF08221.11 gi|159041909|ref|YP_001541161.1| - 0.0097 16.0 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.7 gi|159041909|ref|YP_001541161.1| - 0.012 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_46 PF15977.5 gi|159041909|ref|YP_001541161.1| - 0.017 15.1 0.2 0.036 14.1 0.2 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA binding Penicillinase_R PF03965.16 gi|159041909|ref|YP_001541161.1| - 0.025 14.9 0.0 0.028 14.8 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor TFIIE_alpha PF02002.17 gi|159041909|ref|YP_001541161.1| - 0.033 14.1 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.6 gi|159041909|ref|YP_001541161.1| - 0.036 14.0 0.0 0.043 13.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|159041909|ref|YP_001541161.1| - 0.043 14.0 0.0 0.056 13.6 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_micro PF17007.5 gi|159041909|ref|YP_001541161.1| - 0.062 12.1 0.1 0.062 12.1 0.1 1.0 1 0 0 1 1 1 0 HTH-like HTH_5 PF01022.20 gi|159041909|ref|YP_001541161.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.10 gi|159041909|ref|YP_001541161.1| - 0.089 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF5013 PF16405.5 gi|159041910|ref|YP_001541162.1| - 0.24 11.7 2.6 71 3.7 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF5013) Radical_SAM PF04055.21 gi|159041911|ref|YP_001541163.1| - 3.2e-26 92.7 0.0 6.8e-26 91.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|159041911|ref|YP_001541163.1| - 4.9e-09 36.6 0.0 1.6e-08 34.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159041911|ref|YP_001541163.1| - 1.3e-08 35.0 0.0 3.2e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|159041911|ref|YP_001541163.1| - 1.5e-08 35.0 0.1 4.6e-08 33.5 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AP_endonuc_2 PF01261.24 gi|159041911|ref|YP_001541163.1| - 0.0027 17.2 0.0 0.03 13.7 0.0 2.2 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.9 gi|159041911|ref|YP_001541163.1| - 0.017 14.4 0.0 5.5 6.2 0.0 2.1 2 0 0 2 2 2 0 Glycoside hydrolase 97 CCG PF02754.16 gi|159041912|ref|YP_001541164.1| - 6.6e-24 83.9 0.0 9.9e-12 44.9 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|159041912|ref|YP_001541164.1| - 3.5e-09 37.0 1.3 3.5e-09 37.0 1.3 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159041912|ref|YP_001541164.1| - 7.1e-09 35.6 1.8 7.1e-09 35.6 1.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159041912|ref|YP_001541164.1| - 2.1e-07 31.0 1.7 2.1e-07 31.0 1.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041912|ref|YP_001541164.1| - 3e-07 30.9 0.2 0.005 17.4 0.0 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159041912|ref|YP_001541164.1| - 3.5e-06 27.5 6.6 3.6e-05 24.2 4.3 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159041912|ref|YP_001541164.1| - 1.9e-05 25.5 1.5 5.3e-05 24.1 1.5 1.8 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|159041912|ref|YP_001541164.1| - 2e-05 24.4 9.4 0.026 14.6 2.7 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|159041912|ref|YP_001541164.1| - 0.0012 19.2 4.8 0.052 14.1 0.6 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159041912|ref|YP_001541164.1| - 0.028 14.6 2.4 0.62 10.2 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159041912|ref|YP_001541164.1| - 0.039 14.0 14.6 0.79 9.9 0.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|159041912|ref|YP_001541164.1| - 0.059 14.2 0.3 6.9 7.6 0.0 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|159041912|ref|YP_001541164.1| - 0.095 12.9 1.7 0.87 9.8 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159041912|ref|YP_001541164.1| - 0.12 12.2 23.5 0.045 13.6 1.3 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|159041912|ref|YP_001541164.1| - 3.8 8.3 5.5 4.3 8.2 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain PMP1_2 PF08114.11 gi|159041912|ref|YP_001541164.1| - 5.1 6.9 7.6 0.16 11.7 0.7 2.1 2 0 0 2 2 1 0 ATPase proteolipid family Fer4_13 PF13370.6 gi|159041912|ref|YP_001541164.1| - 6.2 7.4 7.9 26 5.4 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I MazG PF03819.17 gi|159041913|ref|YP_001541165.1| - 8.9e-10 38.6 0.5 8.9e-10 38.6 0.5 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|159041913|ref|YP_001541165.1| - 3.2e-05 24.1 0.1 4.4e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|159041913|ref|YP_001541165.1| - 0.00087 19.7 0.3 0.0011 19.4 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase DUF1073 PF06381.11 gi|159041913|ref|YP_001541165.1| - 0.013 14.3 0.1 0.014 14.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1073) Methyltransf_24 PF13578.6 gi|159041914|ref|YP_001541166.1| - 2.6e-11 44.5 0.0 3.8e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|159041914|ref|YP_001541166.1| - 0.00093 18.4 0.0 0.0013 18.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase CmcI PF04989.12 gi|159041914|ref|YP_001541166.1| - 0.0018 18.0 0.0 0.0033 17.1 0.0 1.4 1 1 0 1 1 1 1 Cephalosporin hydroxylase Glycos_transf_2 PF00535.26 gi|159041915|ref|YP_001541167.1| - 2.3e-23 82.8 0.0 3.8e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|159041915|ref|YP_001541167.1| - 1.6e-16 60.9 0.0 2.6e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|159041915|ref|YP_001541167.1| - 1.1e-13 51.6 0.4 1.1e-13 51.6 0.4 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|159041915|ref|YP_001541167.1| - 2.3e-08 33.7 0.0 4.7e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|159041915|ref|YP_001541167.1| - 7.8e-05 22.3 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|159041915|ref|YP_001541167.1| - 0.1 13.1 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF3566 PF12089.8 gi|159041916|ref|YP_001541168.1| - 0.33 11.3 7.9 1.6 9.1 7.9 1.9 1 1 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) Gemini_mov PF01708.16 gi|159041916|ref|YP_001541168.1| - 0.64 9.8 3.0 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 Geminivirus putative movement protein COX14 PF14880.6 gi|159041916|ref|YP_001541168.1| - 0.84 9.5 7.4 5.9 6.8 0.3 2.2 2 0 0 2 2 2 0 Cytochrome oxidase c assembly DUF2070 PF09843.9 gi|159041916|ref|YP_001541168.1| - 2.4 6.3 7.6 2.7 6.2 7.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2207 PF09972.9 gi|159041916|ref|YP_001541168.1| - 5.3 5.7 5.1 7.6 5.2 5.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CPBP PF02517.16 gi|159041916|ref|YP_001541168.1| - 6.1 7.3 7.3 12 6.4 7.3 1.6 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease 5-FTHF_cyc-lig PF01812.20 gi|159041917|ref|YP_001541169.1| - 5.8e-32 111.1 0.0 7e-32 110.8 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF1874 PF08960.10 gi|159041918|ref|YP_001541170.1| - 2.3e-07 30.9 0.0 2.7e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1874) NADH5_C PF06455.11 gi|159041918|ref|YP_001541170.1| - 0.15 11.7 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 NADH dehydrogenase subunit 5 C-terminus Fer2_3 PF13085.6 gi|159041919|ref|YP_001541171.1| - 1.1e-34 118.7 0.7 1.8e-34 118.0 0.0 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|159041919|ref|YP_001541171.1| - 4.5e-12 46.2 3.4 5.2e-12 46.0 0.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|159041919|ref|YP_001541171.1| - 1.9e-09 37.5 1.0 1.9e-09 37.5 1.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159041919|ref|YP_001541171.1| - 1.7e-08 34.5 3.0 3.1e-08 33.6 0.8 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159041919|ref|YP_001541171.1| - 5.7e-08 33.2 1.3 5.7e-08 33.2 1.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159041919|ref|YP_001541171.1| - 2.1e-07 31.4 1.9 2.1e-07 31.4 1.9 2.5 2 2 1 3 3 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|159041919|ref|YP_001541171.1| - 1.9e-06 27.7 0.1 1.9e-06 27.7 0.1 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.6 gi|159041919|ref|YP_001541171.1| - 5e-06 27.3 4.0 7.3e-06 26.8 1.1 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|159041919|ref|YP_001541171.1| - 6.7e-05 22.5 1.3 6.7e-05 22.5 1.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|159041919|ref|YP_001541171.1| - 0.00071 19.9 1.0 0.00071 19.9 1.0 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|159041919|ref|YP_001541171.1| - 0.001 19.0 2.3 0.001 19.0 2.3 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|159041919|ref|YP_001541171.1| - 0.0018 18.8 1.1 0.0018 18.8 1.1 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|159041919|ref|YP_001541171.1| - 0.022 14.8 1.4 0.022 14.8 1.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|159041919|ref|YP_001541171.1| - 0.03 14.5 5.6 1.6 9.0 0.3 2.6 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer2_4 PF13510.6 gi|159041919|ref|YP_001541171.1| - 0.037 14.1 0.2 0.086 12.9 0.2 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.6 gi|159041919|ref|YP_001541171.1| - 0.058 13.5 0.9 0.058 13.5 0.9 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|159041919|ref|YP_001541171.1| - 0.13 13.0 1.9 0.28 12.0 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|159041919|ref|YP_001541171.1| - 0.17 12.7 6.9 4.1 8.3 4.1 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|159041919|ref|YP_001541171.1| - 5.9 8.1 23.1 1 10.5 5.3 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.22 gi|159041920|ref|YP_001541172.1| - 2.2e-27 95.5 1.4 2.7e-27 95.2 1.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Gemini_mov PF01708.16 gi|159041920|ref|YP_001541172.1| - 0.23 11.2 1.5 0.26 11.1 0.2 1.8 2 0 0 2 2 2 0 Geminivirus putative movement protein Sdh_cyt PF01127.22 gi|159041921|ref|YP_001541173.1| - 1.6e-07 31.4 11.6 2.5e-07 30.8 11.6 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4405 PF14358.6 gi|159041921|ref|YP_001541173.1| - 0.015 15.9 3.5 0.015 15.9 3.5 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4405) PIG-P PF08510.12 gi|159041921|ref|YP_001541173.1| - 0.015 15.2 2.7 0.025 14.5 2.7 1.4 1 0 0 1 1 1 0 PIG-P YfhO PF09586.10 gi|159041921|ref|YP_001541173.1| - 0.041 12.1 3.3 0.053 11.8 3.3 1.2 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Tetraspanin PF00335.20 gi|159041921|ref|YP_001541173.1| - 0.75 9.5 7.0 0.48 10.1 3.5 2.0 2 0 0 2 2 2 0 Tetraspanin family CrgA PF06781.12 gi|159041921|ref|YP_001541173.1| - 1.2 9.2 10.6 2.1 8.5 5.0 2.2 2 0 0 2 2 2 0 Cell division protein CrgA DUF2975 PF11188.8 gi|159041921|ref|YP_001541173.1| - 1.8 8.4 10.9 0.17 11.7 6.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Bac_export_2 PF01312.19 gi|159041921|ref|YP_001541173.1| - 4 6.6 6.4 1.5 7.9 4.0 1.5 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family EIF_2_alpha PF07541.12 gi|159041923|ref|YP_001541175.1| - 3.1e-20 72.4 0.0 7e-20 71.3 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|159041923|ref|YP_001541175.1| - 1.7e-10 41.0 0.1 3.3e-10 40.2 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Nop10p PF04135.12 gi|159041924|ref|YP_001541176.1| - 5.7e-21 74.3 2.2 7.2e-21 74.0 2.2 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|159041924|ref|YP_001541176.1| - 0.0046 16.8 1.1 0.0046 16.8 1.1 2.0 3 0 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|159041924|ref|YP_001541176.1| - 0.017 15.4 1.8 0.028 14.7 1.8 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF1272 PF06906.11 gi|159041924|ref|YP_001541176.1| - 0.019 15.1 1.7 0.025 14.6 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.19 gi|159041924|ref|YP_001541176.1| - 0.021 14.8 0.9 0.03 14.4 0.9 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1258 PF06869.12 gi|159041924|ref|YP_001541176.1| - 0.025 14.1 0.7 0.03 13.8 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) Zn_ribbon_SprT PF17283.2 gi|159041924|ref|YP_001541176.1| - 0.035 14.0 5.8 0.069 13.1 5.8 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|159041924|ref|YP_001541176.1| - 0.045 13.2 5.7 0.28 10.6 5.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|159041924|ref|YP_001541176.1| - 0.058 13.0 0.2 0.083 12.5 0.2 1.3 1 0 0 1 1 1 0 RecR protein PolC_DP2 PF03833.13 gi|159041924|ref|YP_001541176.1| - 0.092 10.6 0.0 0.092 10.6 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ACC PF17848.1 gi|159041924|ref|YP_001541176.1| - 0.12 12.5 4.7 0.86 9.7 0.5 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain CpXC PF14353.6 gi|159041924|ref|YP_001541176.1| - 0.28 11.2 1.4 0.6 10.2 0.3 1.9 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 gi|159041924|ref|YP_001541176.1| - 0.36 10.6 6.5 2.8 7.8 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|159041924|ref|YP_001541176.1| - 6.7 6.3 6.8 7.9 6.0 0.6 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com Ribosomal_L44 PF00935.19 gi|159041925|ref|YP_001541177.1| - 3e-25 88.5 8.4 3e-25 88.5 8.4 1.3 2 0 0 2 2 2 1 Ribosomal protein L44 Rubredoxin_2 PF18073.1 gi|159041925|ref|YP_001541177.1| - 0.005 16.5 3.3 0.03 14.0 0.3 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain RecR PF02132.15 gi|159041925|ref|YP_001541177.1| - 0.0097 15.5 2.6 0.21 11.2 0.4 2.2 2 0 0 2 2 2 1 RecR protein zf-AN1 PF01428.16 gi|159041925|ref|YP_001541177.1| - 0.04 14.1 1.8 6.8 6.9 0.1 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger Rpr2 PF04032.16 gi|159041925|ref|YP_001541177.1| - 0.041 14.1 2.0 0.066 13.5 2.0 1.4 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain RNA_POL_M_15KD PF02150.16 gi|159041925|ref|YP_001541177.1| - 0.047 13.6 0.1 0.047 13.6 0.1 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-FPG_IleRS PF06827.14 gi|159041925|ref|YP_001541177.1| - 0.058 13.3 1.2 0.058 13.3 1.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.6 gi|159041925|ref|YP_001541177.1| - 0.11 12.6 3.5 1.2 9.3 4.2 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Sulfatase PF00884.23 gi|159041927|ref|YP_001541179.1| - 3.1e-39 135.2 0.0 4e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|159041927|ref|YP_001541179.1| - 5.4e-06 26.2 0.0 0.058 13.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|159041927|ref|YP_001541179.1| - 4.4e-05 22.3 0.0 0.00011 21.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF4994 PF16385.5 gi|159041927|ref|YP_001541179.1| - 0.0014 18.5 0.1 0.0036 17.2 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function DUF4976 PF16347.5 gi|159041927|ref|YP_001541179.1| - 0.04 14.2 0.0 0.1 12.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4976) Cys_Met_Meta_PP PF01053.20 gi|159041928|ref|YP_001541180.1| - 5.6e-115 383.9 0.0 6.3e-115 383.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|159041928|ref|YP_001541180.1| - 0.02 14.2 0.1 0.031 13.6 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family MFS_1 PF07690.16 gi|159041929|ref|YP_001541181.1| - 3.5e-30 105.1 79.8 8.4e-28 97.3 49.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159041929|ref|YP_001541181.1| - 7.1e-11 41.6 37.5 1.5e-09 37.2 17.2 2.2 1 1 0 2 2 2 2 Sugar (and other) transporter PfkB PF00294.24 gi|159041930|ref|YP_001541182.1| - 2.7e-53 181.2 0.0 3.3e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MarC PF01914.17 gi|159041931|ref|YP_001541183.1| - 9.5e-33 113.3 17.8 1.2e-32 112.9 17.8 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein DUF3377 PF11857.8 gi|159041931|ref|YP_001541183.1| - 5.3 7.0 6.0 1.5 8.8 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3377) CbiZ PF01955.18 gi|159041932|ref|YP_001541184.1| - 7.3e-41 140.4 0.4 8.3e-41 140.2 0.4 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase HTH_5 PF01022.20 gi|159041933|ref|YP_001541185.1| - 1.5e-09 37.6 0.0 2e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|159041933|ref|YP_001541185.1| - 1.2e-05 25.2 0.0 1.8e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|159041933|ref|YP_001541185.1| - 0.0018 18.1 0.0 0.0027 17.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|159041933|ref|YP_001541185.1| - 0.0069 16.3 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_10 PF04967.12 gi|159041933|ref|YP_001541185.1| - 0.024 14.4 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain B-block_TFIIIC PF04182.12 gi|159041933|ref|YP_001541185.1| - 0.03 14.5 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR PF01047.22 gi|159041933|ref|YP_001541185.1| - 0.033 14.1 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 MarR family NUMOD1 PF07453.13 gi|159041933|ref|YP_001541185.1| - 0.034 14.4 0.1 0.099 12.9 0.0 1.8 2 0 0 2 2 2 0 NUMOD1 domain HTH_11 PF08279.12 gi|159041933|ref|YP_001541185.1| - 0.046 13.7 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain TnsD PF15978.5 gi|159041933|ref|YP_001541185.1| - 0.063 12.3 0.0 0.064 12.2 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_38 PF13936.6 gi|159041933|ref|YP_001541185.1| - 0.097 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|159041933|ref|YP_001541185.1| - 0.14 12.4 0.0 1.4 9.2 0.0 2.1 1 1 1 2 2 2 0 PaaX-like protein PDDEXK_1 PF12705.7 gi|159041934|ref|YP_001541186.1| - 0.0034 17.4 0.0 0.0042 17.0 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.9 gi|159041934|ref|YP_001541186.1| - 0.11 12.0 0.0 1.8 8.0 0.2 2.2 2 1 1 3 3 3 0 Exonuclease V - a 5' deoxyribonuclease Glyco_hydro_57 PF03065.15 gi|159041935|ref|YP_001541187.1| - 1.4e-30 106.7 0.1 1.7e-25 90.0 0.0 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 57 Radical_SAM PF04055.21 gi|159041936|ref|YP_001541188.1| - 3.2e-20 73.2 0.0 7e-20 72.1 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|159041936|ref|YP_001541188.1| - 3.5e-17 62.5 0.0 5.9e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Lactamase_B PF00753.27 gi|159041938|ref|YP_001541190.1| - 1.4e-21 77.4 0.0 1.9e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|159041938|ref|YP_001541190.1| - 0.00056 19.5 0.0 0.001 18.6 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain UvrD_C PF13361.6 gi|159041939|ref|YP_001541191.1| - 0.01 15.3 0.7 0.01 15.3 0.7 1.5 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain APG6_N PF17675.1 gi|159041939|ref|YP_001541191.1| - 0.017 15.6 2.8 0.018 15.6 1.8 1.5 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF2205 PF10224.9 gi|159041939|ref|YP_001541191.1| - 0.02 14.9 2.4 0.041 13.9 0.8 2.4 2 1 0 2 2 2 0 Short coiled-coil protein Clusterin PF01093.17 gi|159041939|ref|YP_001541191.1| - 0.055 12.5 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 Clusterin bZIP_1 PF00170.21 gi|159041939|ref|YP_001541191.1| - 0.091 12.9 4.6 1.1 9.4 0.5 2.5 1 1 1 2 2 2 0 bZIP transcription factor Sec34 PF04136.15 gi|159041939|ref|YP_001541191.1| - 0.15 11.9 0.8 0.25 11.2 0.3 1.6 2 0 0 2 2 2 0 Sec34-like family ZapB PF06005.12 gi|159041939|ref|YP_001541191.1| - 0.17 12.3 6.5 0.49 10.9 6.5 1.9 1 1 0 1 1 1 0 Cell division protein ZapB YabA PF06156.13 gi|159041939|ref|YP_001541191.1| - 0.35 11.5 5.9 1.4 9.6 3.9 2.6 2 1 0 2 2 2 0 Initiation control protein YabA DUF1664 PF07889.12 gi|159041939|ref|YP_001541191.1| - 0.92 9.6 5.2 1.9 8.5 2.2 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|159041939|ref|YP_001541191.1| - 0.98 9.7 7.9 0.46 10.7 3.1 2.4 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DASH_Dad4 PF08650.10 gi|159041939|ref|YP_001541191.1| - 9.4 6.3 9.1 4.3 7.4 0.7 3.0 2 1 1 3 3 3 0 DASH complex subunit Dad4 HIT PF01230.23 gi|159041940|ref|YP_001541192.1| - 5.2e-31 107.3 0.1 2.2e-30 105.3 0.0 1.8 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|159041940|ref|YP_001541192.1| - 1.3e-15 57.8 0.1 2.2e-15 57.1 0.0 1.4 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|159041940|ref|YP_001541192.1| - 0.014 15.3 0.2 0.024 14.5 0.2 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 DUF4931 PF16285.5 gi|159041940|ref|YP_001541192.1| - 0.024 14.0 0.0 0.027 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4931) PCNA_N PF00705.18 gi|159041941|ref|YP_001541193.1| - 1.2e-12 47.7 0.0 1.5e-11 44.1 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|159041941|ref|YP_001541193.1| - 1.7e-10 41.1 0.5 1.4e-08 35.0 0.1 2.9 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|159041941|ref|YP_001541193.1| - 0.00054 19.1 0.0 0.12 11.4 0.0 2.2 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|159041941|ref|YP_001541193.1| - 0.0022 17.5 0.0 0.0035 16.8 0.0 1.5 1 1 0 1 1 1 1 Rad9 DNA_primase_S PF01896.19 gi|159041942|ref|YP_001541194.1| - 2.3e-18 66.9 0.0 4.9e-18 65.8 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit RNA_Me_trans PF04252.13 gi|159041943|ref|YP_001541195.1| - 0.057 13.0 0.1 0.07 12.7 0.1 1.1 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase V_ATPase_I PF01496.19 gi|159041944|ref|YP_001541196.1| - 9.4e-20 70.2 27.8 5.8e-14 51.0 10.6 4.7 3 1 1 4 4 4 2 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.20 gi|159041944|ref|YP_001541196.1| - 0.0047 16.9 8.8 0.89 9.5 0.7 4.0 4 0 0 4 4 4 1 Prefoldin subunit GAS PF13851.6 gi|159041944|ref|YP_001541196.1| - 0.018 14.4 4.0 0.96 8.8 0.3 3.1 3 0 0 3 3 3 0 Growth-arrest specific micro-tubule binding Uds1 PF15456.6 gi|159041944|ref|YP_001541196.1| - 0.028 14.6 4.5 3.9 7.7 0.1 3.3 3 0 0 3 3 3 0 Up-regulated During Septation DUF1664 PF07889.12 gi|159041944|ref|YP_001541196.1| - 0.033 14.2 7.3 3.2 7.8 0.6 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|159041944|ref|YP_001541196.1| - 0.05 12.5 7.3 0.21 10.5 1.0 2.5 3 0 0 3 3 3 0 Spc7 kinetochore protein DHR10 PF18595.1 gi|159041944|ref|YP_001541196.1| - 0.051 13.6 13.5 0.43 10.7 0.1 3.9 3 1 0 3 3 3 0 Designed helical repeat protein 10 domain Mod_r PF07200.13 gi|159041944|ref|YP_001541196.1| - 0.057 13.5 3.2 3.4 7.8 0.1 3.1 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CENP-Q PF13094.6 gi|159041944|ref|YP_001541196.1| - 0.079 13.2 4.8 0.51 10.5 1.3 2.9 3 0 0 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit Tropomyosin PF00261.20 gi|159041944|ref|YP_001541196.1| - 0.12 11.8 7.2 3.6 6.9 0.9 3.2 3 0 0 3 3 3 0 Tropomyosin YabA PF06156.13 gi|159041944|ref|YP_001541196.1| - 0.12 13.0 9.2 2.1 9.1 0.4 4.0 3 1 0 4 4 4 0 Initiation control protein YabA PspA_IM30 PF04012.12 gi|159041944|ref|YP_001541196.1| - 0.15 11.6 6.5 0.78 9.3 0.4 3.0 3 0 0 3 3 3 0 PspA/IM30 family Seryl_tRNA_N PF02403.22 gi|159041944|ref|YP_001541196.1| - 0.18 12.0 7.1 5.2 7.3 0.3 3.7 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Spc24 PF08286.11 gi|159041944|ref|YP_001541196.1| - 0.19 12.0 6.7 0.65 10.3 0.2 3.3 3 1 0 3 3 3 0 Spc24 subunit of Ndc80 Baculo_PEP_C PF04513.12 gi|159041944|ref|YP_001541196.1| - 0.27 11.2 9.8 2.5 8.1 2.5 3.8 2 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|159041944|ref|YP_001541196.1| - 0.28 11.5 5.6 5.7 7.3 0.1 3.6 3 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) Sec2p PF06428.11 gi|159041944|ref|YP_001541196.1| - 0.28 11.2 6.6 4 7.5 0.7 3.5 4 0 0 4 4 3 0 GDP/GTP exchange factor Sec2p APG17 PF04108.12 gi|159041944|ref|YP_001541196.1| - 0.32 10.0 5.1 4.8 6.2 0.2 3.0 3 0 0 3 3 3 0 Autophagy protein Apg17 Flagellar_rod PF05149.12 gi|159041944|ref|YP_001541196.1| - 0.38 10.2 7.3 0.4 10.1 0.1 3.0 3 0 0 3 3 3 0 Paraflagellar rod protein TPR_MLP1_2 PF07926.12 gi|159041944|ref|YP_001541196.1| - 0.42 10.7 6.3 3.1 7.9 0.1 2.9 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein DUF3086 PF11285.8 gi|159041944|ref|YP_001541196.1| - 0.43 9.6 2.9 4.2 6.4 0.8 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF3086) SKA1 PF07160.12 gi|159041944|ref|YP_001541196.1| - 0.48 10.2 6.8 4.3 7.1 0.2 3.4 3 1 1 4 4 3 0 Spindle and kinetochore-associated protein 1 Borrelia_lipo_1 PF05714.11 gi|159041944|ref|YP_001541196.1| - 0.52 10.1 3.7 3.8 7.2 0.7 2.4 2 0 0 2 2 2 0 Borrelia burgdorferi virulent strain associated lipoprotein DUF641 PF04859.12 gi|159041944|ref|YP_001541196.1| - 0.58 10.5 3.9 16 5.8 0.3 2.6 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) TACC_C PF05010.14 gi|159041944|ref|YP_001541196.1| - 0.58 9.9 5.4 2.1 8.1 0.1 2.7 3 0 0 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal PKcGMP_CC PF16808.5 gi|159041944|ref|YP_001541196.1| - 0.64 9.9 14.0 9.5 6.2 0.7 3.9 3 1 0 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4201 PF13870.6 gi|159041944|ref|YP_001541196.1| - 0.64 9.7 5.0 1.5 8.5 0.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) APG6_N PF17675.1 gi|159041944|ref|YP_001541196.1| - 0.66 10.5 6.7 3.1 8.3 1.1 3.0 3 0 0 3 3 3 0 Apg6 coiled-coil region DivIVA PF05103.13 gi|159041944|ref|YP_001541196.1| - 0.67 10.0 9.2 2.8 8.0 0.1 3.2 3 1 0 3 3 3 0 DivIVA protein Snapin_Pallidin PF14712.6 gi|159041944|ref|YP_001541196.1| - 0.72 10.3 7.4 18 5.8 1.5 4.0 3 1 0 3 3 3 0 Snapin/Pallidin TMF_DNA_bd PF12329.8 gi|159041944|ref|YP_001541196.1| - 0.87 9.6 10.4 0.053 13.5 0.8 2.9 3 0 0 3 3 2 0 TATA element modulatory factor 1 DNA binding Nup54 PF13874.6 gi|159041944|ref|YP_001541196.1| - 1.1 9.3 5.8 5.9 7.0 0.1 3.2 3 1 0 3 3 3 0 Nucleoporin complex subunit 54 DUF16 PF01519.16 gi|159041944|ref|YP_001541196.1| - 1.3 9.6 7.2 23 5.5 0.0 3.9 3 2 0 3 3 3 0 Protein of unknown function DUF16 PhoU PF01895.19 gi|159041944|ref|YP_001541196.1| - 1.3 9.5 8.5 0.68 10.4 0.2 3.4 3 0 0 3 3 3 0 PhoU domain NBP1 PF08537.10 gi|159041944|ref|YP_001541196.1| - 2.5 7.5 4.1 4.9 6.5 1.7 2.4 2 1 0 2 2 2 0 Fungal Nap binding protein NBP1 COG2 PF06148.11 gi|159041944|ref|YP_001541196.1| - 2.7 8.1 8.3 6.9 6.8 0.6 3.5 3 1 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Med4 PF10018.9 gi|159041944|ref|YP_001541196.1| - 4.4 6.9 5.7 7.2 6.2 0.8 3.0 3 0 0 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF2730 PF10805.8 gi|159041944|ref|YP_001541196.1| - 4.6 7.4 6.7 17 5.5 0.1 3.8 5 0 0 5 5 3 0 Protein of unknown function (DUF2730) Fib_alpha PF08702.10 gi|159041944|ref|YP_001541196.1| - 5 7.3 8.7 35 4.6 0.4 3.4 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|159041944|ref|YP_001541196.1| - 5.1 7.1 15.1 0.15 12.1 2.2 3.6 3 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|159041944|ref|YP_001541196.1| - 5.3 7.2 7.5 3.9 7.6 1.3 2.8 3 0 0 3 3 3 0 Autophagy protein 16 (ATG16) DUF4140 PF13600.6 gi|159041944|ref|YP_001541196.1| - 5.6 7.5 7.1 1e+02 3.4 0.2 3.9 3 1 0 4 4 4 0 N-terminal domain of unknown function (DUF4140) DUF4200 PF13863.6 gi|159041944|ref|YP_001541196.1| - 5.9 7.3 7.2 20 5.6 0.4 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4200) Uso1_p115_C PF04871.13 gi|159041944|ref|YP_001541196.1| - 7.1 7.0 5.7 9.2 6.7 0.4 2.5 3 0 0 3 3 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region HMMR_N PF15905.5 gi|159041944|ref|YP_001541196.1| - 8.2 5.8 10.0 4.4 6.7 1.0 2.9 3 0 0 3 3 3 0 Hyaluronan mediated motility receptor N-terminal Swi5 PF07061.11 gi|159041944|ref|YP_001541196.1| - 9.5 6.4 6.4 41 4.3 0.2 3.3 4 0 0 4 4 2 0 Swi5 GreA_GreB_N PF03449.15 gi|159041944|ref|YP_001541196.1| - 9.6 6.4 10.1 26 5.1 0.9 4.0 3 2 1 4 4 3 0 Transcription elongation factor, N-terminal Acetyltransf_1 PF00583.25 gi|159041945|ref|YP_001541197.1| - 1.8e-16 60.4 0.0 2.5e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|159041945|ref|YP_001541197.1| - 8.2e-11 42.2 0.0 1.3e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|159041945|ref|YP_001541197.1| - 2.2e-08 34.1 0.0 2.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|159041945|ref|YP_001541197.1| - 7.7e-08 32.2 0.0 1.4e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|159041945|ref|YP_001541197.1| - 0.0065 16.2 0.0 0.024 14.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|159041945|ref|YP_001541197.1| - 0.0089 16.2 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF402 PF04167.13 gi|159041946|ref|YP_001541198.1| - 4e-11 42.9 0.9 8.9e-11 41.8 0.9 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|159041946|ref|YP_001541198.1| - 0.04 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease E/G family DNA_methylase PF00145.17 gi|159041947|ref|YP_001541199.1| - 8.2e-50 170.0 0.0 4.4e-33 115.0 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|159041947|ref|YP_001541199.1| - 0.023 14.2 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FtsX PF02687.21 gi|159041948|ref|YP_001541200.1| - 3.7e-14 52.9 8.0 3.7e-14 52.9 8.0 3.8 3 2 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|159041948|ref|YP_001541200.1| - 5.6e-08 33.4 6.6 5.6e-08 33.4 6.6 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain LptF_LptG PF03739.14 gi|159041948|ref|YP_001541200.1| - 0.21 10.4 15.6 0.01 14.7 9.2 2.0 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG adh_short_C2 PF13561.6 gi|159041949|ref|YP_001541201.1| - 3.1e-71 239.6 3.0 3.6e-71 239.4 3.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159041949|ref|YP_001541201.1| - 3e-64 216.1 2.7 3.5e-64 215.9 2.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159041949|ref|YP_001541201.1| - 3.8e-13 49.7 0.1 5.6e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 KR domain AdoHcyase_NAD PF00670.21 gi|159041949|ref|YP_001541201.1| - 0.036 14.1 0.8 0.078 13.0 0.8 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|159041949|ref|YP_001541201.1| - 0.049 13.5 2.6 0.063 13.2 1.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1776 PF08643.10 gi|159041949|ref|YP_001541201.1| - 0.057 12.8 0.0 0.12 11.7 0.0 1.5 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|159041949|ref|YP_001541201.1| - 0.064 12.7 0.1 0.11 11.9 0.1 1.3 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|159041949|ref|YP_001541201.1| - 0.17 11.2 2.5 0.87 8.9 0.7 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_hydro_2_C PF02836.17 gi|159041950|ref|YP_001541202.1| - 7.1e-62 209.2 0.0 9.8e-62 208.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 gi|159041950|ref|YP_001541202.1| - 9.8e-17 61.4 0.4 2.4e-16 60.1 0.4 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|159041950|ref|YP_001541202.1| - 8.5e-08 32.9 0.0 1.8e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 gi|159041950|ref|YP_001541202.1| - 9.6e-05 22.9 0.4 0.0002 21.9 0.4 1.5 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain DUF4434 PF14488.6 gi|159041950|ref|YP_001541202.1| - 0.0002 21.4 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4434) Glyco_hydro_cc PF11790.8 gi|159041950|ref|YP_001541202.1| - 0.00046 19.8 0.0 0.00088 18.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core Glyco_hydro_42 PF02449.15 gi|159041950|ref|YP_001541202.1| - 0.046 13.0 0.0 0.093 12.1 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase BORCS8 PF10167.9 gi|159041950|ref|YP_001541202.1| - 0.09 12.7 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 8 TFIIE_alpha PF02002.17 gi|159041952|ref|YP_001541204.1| - 3.3e-06 26.9 0.0 6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit DUF3131 PF11329.8 gi|159041952|ref|YP_001541204.1| - 0.089 11.9 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3131) Transp_cyt_pur PF02133.15 gi|159041953|ref|YP_001541205.1| - 3.2e-65 220.6 48.9 4.2e-65 220.2 48.9 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin SLC3A2_N PF16028.5 gi|159041953|ref|YP_001541205.1| - 1.3 8.6 12.9 0.27 10.8 0.6 4.5 4 0 0 4 4 4 0 Solute carrier family 3 member 2 N-terminus Methyltr_RsmB-F PF01189.17 gi|159041954|ref|YP_001541206.1| - 4e-42 144.1 0.0 5.6e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|159041954|ref|YP_001541206.1| - 0.00097 19.0 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|159041954|ref|YP_001541206.1| - 0.002 18.2 0.0 0.0035 17.5 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|159041954|ref|YP_001541206.1| - 0.022 15.4 0.0 0.054 14.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Hydantoinase_B PF02538.14 gi|159041955|ref|YP_001541207.1| - 5.1e-190 632.3 0.3 5.7e-190 632.1 0.3 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase RelB_leu_zip PF16180.5 gi|159041955|ref|YP_001541207.1| - 0.05 13.6 0.0 0.84 9.7 0.0 2.3 2 0 0 2 2 2 0 RelB leucine zipper Hydantoinase_A PF01968.18 gi|159041956|ref|YP_001541208.1| - 2e-96 322.7 3.8 5.2e-96 321.3 0.2 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|159041956|ref|YP_001541208.1| - 1.2e-48 165.2 0.0 2.7e-48 164.0 0.0 1.6 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|159041956|ref|YP_001541208.1| - 0.1 11.1 1.4 0.93 8.0 0.1 2.3 2 1 0 2 2 2 0 MutL protein BcrAD_BadFG PF01869.20 gi|159041956|ref|YP_001541208.1| - 0.14 11.7 0.1 16 4.9 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Lactamase_B PF00753.27 gi|159041957|ref|YP_001541209.1| - 4.2e-19 69.3 0.1 4.9e-19 69.1 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|159041957|ref|YP_001541209.1| - 0.001 19.0 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|159041957|ref|YP_001541209.1| - 0.0024 17.4 0.1 0.0029 17.1 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF3466 PF11949.8 gi|159041957|ref|YP_001541209.1| - 0.026 13.2 0.1 0.031 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3466) Plasmo_rep PF12135.8 gi|159041957|ref|YP_001541209.1| - 0.04 13.5 1.2 0.087 12.4 1.2 1.6 1 0 0 1 1 1 0 Plasmodium repeat family Amdase PF17645.1 gi|159041958|ref|YP_001541210.1| - 1e-35 123.4 0.0 1.3e-35 123.0 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|159041958|ref|YP_001541210.1| - 1.1e-14 54.9 0.0 1.2e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase PIN PF01850.21 gi|159041958|ref|YP_001541210.1| - 0.045 14.3 0.8 7.3 7.1 0.0 2.6 1 1 1 2 2 2 0 PIN domain Sugar_tr PF00083.24 gi|159041959|ref|YP_001541211.1| - 2.8e-27 95.7 34.6 1.8e-17 63.4 14.3 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|159041959|ref|YP_001541211.1| - 1.3e-23 83.6 50.9 1.3e-23 83.6 50.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTE PF02126.18 gi|159041960|ref|YP_001541212.1| - 0.00078 19.0 0.0 0.0035 16.8 0.0 1.9 1 1 0 1 1 1 1 Phosphotriesterase family Ins_allergen_rp PF06757.13 gi|159041960|ref|YP_001541212.1| - 0.085 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification SesA PF17107.5 gi|159041961|ref|YP_001541213.1| - 0.02 15.1 0.1 0.29 11.3 0.0 2.0 1 1 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Band_7 PF01145.25 gi|159041963|ref|YP_001541215.1| - 6.4e-18 65.4 0.5 9.9e-18 64.8 0.5 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|159041963|ref|YP_001541215.1| - 1.1e-16 61.2 0.3 2e-16 60.3 0.3 1.4 1 1 0 1 1 1 1 SPFH domain-Band 7 family HisG PF01634.18 gi|159041964|ref|YP_001541216.1| - 1e-41 142.5 0.0 1.3e-41 142.2 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|159041964|ref|YP_001541216.1| - 2.1e-20 72.6 0.2 4.3e-20 71.6 0.2 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NIR_SIR_ferr PF03460.17 gi|159041964|ref|YP_001541216.1| - 0.099 12.5 0.1 5.5 6.9 0.0 3.0 3 0 0 3 3 3 0 Nitrite/Sulfite reductase ferredoxin-like half domain His_biosynth PF00977.21 gi|159041965|ref|YP_001541217.1| - 1.3e-39 136.0 0.3 1.5e-39 135.8 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|159041965|ref|YP_001541217.1| - 0.0053 16.2 0.6 0.062 12.7 0.1 2.0 2 0 0 2 2 2 1 PcrB family RYDR_ITPR PF01365.21 gi|159041965|ref|YP_001541217.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 RIH domain Dus PF01207.17 gi|159041965|ref|YP_001541217.1| - 0.19 10.8 0.1 0.79 8.7 0.0 1.8 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) IGPD PF00475.18 gi|159041966|ref|YP_001541218.1| - 3e-50 170.3 0.3 3.8e-50 169.9 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase DUF2415 PF10313.9 gi|159041966|ref|YP_001541218.1| - 0.021 14.7 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein domain (DUF2415) His_biosynth PF00977.21 gi|159041967|ref|YP_001541219.1| - 1.2e-79 267.0 0.9 1.3e-79 266.9 0.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|159041967|ref|YP_001541219.1| - 3.6e-09 36.5 5.0 0.00015 21.3 0.1 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|159041967|ref|YP_001541219.1| - 1.7e-08 33.9 0.0 0.00011 21.5 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|159041967|ref|YP_001541219.1| - 4e-06 26.3 2.0 0.0046 16.3 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|159041967|ref|YP_001541219.1| - 1.8e-05 24.2 0.1 0.11 11.8 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|159041967|ref|YP_001541219.1| - 5.7e-05 22.5 0.2 0.00089 18.5 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase DeoC PF01791.9 gi|159041967|ref|YP_001541219.1| - 0.004 16.8 0.4 0.13 11.9 0.0 2.6 1 1 2 3 3 3 1 DeoC/LacD family aldolase HMGL-like PF00682.19 gi|159041967|ref|YP_001541219.1| - 0.0081 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 HMGL-like G3P_antiterm PF04309.12 gi|159041967|ref|YP_001541219.1| - 0.0086 15.5 0.1 0.12 11.8 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|159041967|ref|YP_001541219.1| - 0.07 12.3 0.0 0.15 11.2 0.0 1.5 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|159041967|ref|YP_001541219.1| - 0.097 12.1 0.3 0.39 10.1 0.1 1.9 2 0 0 2 2 2 0 PcrB family Trp_syntA PF00290.20 gi|159041967|ref|YP_001541219.1| - 0.14 11.0 1.0 0.52 9.1 0.4 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain PRA-CH PF01502.18 gi|159041968|ref|YP_001541220.1| - 4.8e-31 106.4 0.2 6.5e-31 106.0 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase GATase PF00117.28 gi|159041969|ref|YP_001541221.1| - 9e-15 54.9 0.0 1.2e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|159041969|ref|YP_001541221.1| - 2.6e-05 24.2 0.0 6.1e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|159041969|ref|YP_001541221.1| - 0.0017 18.0 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|159041969|ref|YP_001541221.1| - 0.0044 16.8 0.6 0.21 11.3 0.3 2.5 2 1 1 3 3 3 1 Peptidase C26 Pentapeptide_2 PF01469.18 gi|159041969|ref|YP_001541221.1| - 2.6 8.0 7.6 0.91 9.5 0.9 3.0 3 0 0 3 3 3 0 Pentapeptide repeats (8 copies) PRA-PH PF01503.17 gi|159041970|ref|YP_001541222.1| - 1.1e-16 61.0 0.0 1.2e-16 60.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|159041970|ref|YP_001541222.1| - 0.0025 18.0 0.1 0.0033 17.6 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain E1_dh PF00676.20 gi|159041970|ref|YP_001541222.1| - 0.025 13.5 0.0 0.026 13.5 0.0 1.1 1 0 0 1 1 1 0 Dehydrogenase E1 component Histidinol_dh PF00815.20 gi|159041971|ref|YP_001541223.1| - 1.6e-101 340.3 0.0 5.8e-101 338.5 0.0 1.7 1 1 0 1 1 1 1 Histidinol dehydrogenase adh_short_C2 PF13561.6 gi|159041972|ref|YP_001541224.1| - 8.3e-60 202.2 0.8 1.1e-59 201.8 0.8 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159041972|ref|YP_001541224.1| - 1.9e-47 161.3 2.5 3.5e-47 160.4 2.5 1.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159041972|ref|YP_001541224.1| - 2.4e-07 30.8 1.0 2.9e-05 24.1 1.0 2.2 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|159041972|ref|YP_001541224.1| - 8.6e-06 25.4 0.1 2.3e-05 24.0 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|159041972|ref|YP_001541224.1| - 0.0016 17.5 2.0 0.0021 17.1 2.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Aminotran_1_2 PF00155.21 gi|159041973|ref|YP_001541225.1| - 1.2e-46 159.6 0.0 1.4e-46 159.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|159041973|ref|YP_001541225.1| - 0.002 16.8 0.0 0.0027 16.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF4127 PF13552.6 gi|159041973|ref|YP_001541225.1| - 0.0039 15.8 0.0 0.0048 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4127) Aminotran_5 PF00266.19 gi|159041973|ref|YP_001541225.1| - 0.0054 15.7 0.0 0.0086 15.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SBP_bac_5 PF00496.22 gi|159041974|ref|YP_001541226.1| - 4.2e-29 101.7 9.5 4.2e-29 101.7 9.5 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159041974|ref|YP_001541226.1| - 0.058 13.3 14.4 0.087 12.7 14.4 1.2 1 0 0 1 1 1 0 Rifin Stevor PF17410.2 gi|159041974|ref|YP_001541226.1| - 5.9 6.4 16.9 9.3 5.7 16.9 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Na_H_Exchanger PF00999.21 gi|159041975|ref|YP_001541227.1| - 1.8e-42 145.5 46.3 2.4e-42 145.1 46.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Peroxin-13_N PF04088.13 gi|159041975|ref|YP_001541227.1| - 0.023 15.0 2.8 0.043 14.1 2.8 1.6 1 0 0 1 1 1 0 Peroxin 13, N-terminal region Aminotran_3 PF00202.21 gi|159041976|ref|YP_001541228.1| - 3.3e-65 220.3 0.0 3.9e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|159041976|ref|YP_001541228.1| - 0.15 11.2 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II MFS_1 PF07690.16 gi|159041977|ref|YP_001541229.1| - 1.7e-16 60.1 55.9 1.7e-16 60.1 55.9 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159041977|ref|YP_001541229.1| - 9.9e-15 54.3 13.2 9.9e-15 54.3 13.2 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter HKR_ArcB_TM PF18415.1 gi|159041977|ref|YP_001541229.1| - 0.11 13.4 0.5 0.11 13.4 0.5 3.3 3 0 0 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain OATP PF03137.20 gi|159041977|ref|YP_001541229.1| - 0.47 8.7 7.8 0.13 10.5 0.8 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Radical_SAM PF04055.21 gi|159041979|ref|YP_001541231.1| - 1.3e-16 61.5 0.0 1.9e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF4995 PF16386.5 gi|159041979|ref|YP_001541231.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF905 PF06006.12 gi|159041979|ref|YP_001541231.1| - 0.072 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF905) TGT PF01702.18 gi|159041979|ref|YP_001541231.1| - 0.23 10.6 0.0 0.32 10.1 0.0 1.1 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase Radical_SAM PF04055.21 gi|159041980|ref|YP_001541232.1| - 2.7e-13 50.6 0.0 4.1e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.14 gi|159041981|ref|YP_001541233.1| - 1.2e-23 84.1 0.0 2.3e-23 83.1 0.0 1.4 1 1 0 1 1 1 1 Menaquinone biosynthesis Epimerase PF01370.21 gi|159041982|ref|YP_001541234.1| - 4.8e-23 81.9 0.0 9.8e-23 80.9 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159041982|ref|YP_001541234.1| - 5.5e-17 62.2 0.0 8.6e-16 58.2 0.0 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|159041982|ref|YP_001541234.1| - 1.5e-06 27.5 0.0 3.9e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 RmlD substrate binding domain Glyco_transf_4 PF13439.6 gi|159041982|ref|YP_001541234.1| - 0.00051 20.1 1.6 0.0028 17.7 0.3 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Polysacc_synt_2 PF02719.15 gi|159041982|ref|YP_001541234.1| - 0.0077 15.4 0.1 0.012 14.8 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein UDPG_MGDP_dh_N PF03721.14 gi|159041982|ref|YP_001541234.1| - 0.01 15.4 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.10 gi|159041982|ref|YP_001541234.1| - 0.078 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 KR domain DFP PF04127.15 gi|159041982|ref|YP_001541234.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein 3Beta_HSD PF01073.19 gi|159041982|ref|YP_001541234.1| - 0.15 11.1 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Thi4 PF01946.17 gi|159041983|ref|YP_001541235.1| - 5.9e-69 231.9 1.7 7e-69 231.6 1.7 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|159041983|ref|YP_001541235.1| - 8.2e-14 51.9 4.0 3.6e-08 33.4 1.3 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|159041983|ref|YP_001541235.1| - 4.8e-10 39.5 0.2 1e-09 38.5 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|159041983|ref|YP_001541235.1| - 2.1e-09 37.0 4.9 4.2e-07 29.4 1.0 3.0 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|159041983|ref|YP_001541235.1| - 5.6e-09 35.9 0.4 8e-09 35.3 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|159041983|ref|YP_001541235.1| - 3.7e-07 29.7 0.0 5.4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|159041983|ref|YP_001541235.1| - 3.3e-06 26.5 0.1 6.8e-06 25.5 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|159041983|ref|YP_001541235.1| - 3.6e-05 22.7 0.8 5.7e-05 22.0 0.8 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|159041983|ref|YP_001541235.1| - 0.00014 21.2 0.1 0.00026 20.3 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|159041983|ref|YP_001541235.1| - 0.00022 20.5 0.6 0.00031 19.9 0.6 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|159041983|ref|YP_001541235.1| - 0.00055 20.4 0.7 0.004 17.7 0.2 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|159041983|ref|YP_001541235.1| - 0.0017 17.8 0.1 0.0027 17.1 0.1 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|159041983|ref|YP_001541235.1| - 0.023 13.6 0.1 0.038 12.8 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase ThiF PF00899.21 gi|159041983|ref|YP_001541235.1| - 0.027 13.8 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 ThiF family K_oxygenase PF13434.6 gi|159041983|ref|YP_001541235.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|159041983|ref|YP_001541235.1| - 0.15 11.1 0.0 0.3 10.1 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein DNA_pol_B_exo1 PF03104.19 gi|159041984|ref|YP_001541236.1| - 1.9e-08 33.9 0.2 2.2e-08 33.6 0.2 1.1 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|159041984|ref|YP_001541236.1| - 0.00018 21.3 0.1 0.00023 20.9 0.1 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Pox_F12L PF03337.13 gi|159041984|ref|YP_001541236.1| - 0.12 10.5 0.0 0.15 10.2 0.0 1.1 1 0 0 1 1 1 0 Poxvirus F12L protein ATPase_2 PF01637.18 gi|159041985|ref|YP_001541237.1| - 5.3e-60 203.2 0.0 7.3e-60 202.8 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|159041985|ref|YP_001541237.1| - 0.0049 17.3 0.0 0.0084 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|159041985|ref|YP_001541237.1| - 0.03 14.7 0.0 0.46 10.9 0.0 2.7 3 0 0 3 3 3 0 RNA helicase AAA_22 PF13401.6 gi|159041985|ref|YP_001541237.1| - 0.051 13.8 0.0 0.15 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|159041985|ref|YP_001541237.1| - 0.061 13.3 0.0 0.28 11.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|159041985|ref|YP_001541237.1| - 0.083 13.3 0.0 0.26 11.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|159041985|ref|YP_001541237.1| - 0.083 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Herpes_V23 PF01802.17 gi|159041985|ref|YP_001541237.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus VP23 like capsid protein HTH_10 PF04967.12 gi|159041986|ref|YP_001541238.1| - 4.1e-15 55.3 0.0 8.1e-15 54.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|159041986|ref|YP_001541238.1| - 0.0015 18.0 0.0 0.022 14.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|159041986|ref|YP_001541238.1| - 0.0066 16.0 0.2 0.021 14.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 gi|159041986|ref|YP_001541238.1| - 0.022 14.8 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain ACT_4 PF13291.6 gi|159041986|ref|YP_001541238.1| - 0.093 13.3 0.1 0.19 12.3 0.1 1.5 1 0 0 1 1 1 0 ACT domain SBP_bac_5 PF00496.22 gi|159041987|ref|YP_001541239.1| - 1.8e-20 73.2 10.9 1.8e-20 73.2 10.9 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle XRN_M PF17846.1 gi|159041987|ref|YP_001541239.1| - 0.058 12.3 6.9 0.091 11.7 6.9 1.2 1 0 0 1 1 1 0 Xrn1 helical domain DUF4501 PF14946.6 gi|159041987|ref|YP_001541239.1| - 0.26 11.3 7.2 0.49 10.4 7.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) MGC-24 PF05283.11 gi|159041987|ref|YP_001541239.1| - 0.94 9.9 13.1 2.1 8.8 13.1 1.5 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF5305 PF17231.2 gi|159041987|ref|YP_001541239.1| - 1 8.7 10.3 1.8 7.9 10.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) RIFIN PF02009.16 gi|159041987|ref|YP_001541239.1| - 5 6.9 8.1 7.4 6.4 8.1 1.2 1 0 0 1 1 1 0 Rifin RmlD_sub_bind PF04321.17 gi|159041989|ref|YP_001541241.1| - 1.4e-57 195.0 0.0 1.6e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|159041989|ref|YP_001541241.1| - 1.1e-17 64.4 0.1 1.4e-17 64.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159041989|ref|YP_001541241.1| - 2.2e-11 43.7 0.0 3.2e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|159041989|ref|YP_001541241.1| - 2.7e-09 36.6 0.0 2.2e-08 33.6 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|159041989|ref|YP_001541241.1| - 1.9e-05 23.9 0.0 2.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|159041989|ref|YP_001541241.1| - 0.00025 20.3 0.0 0.00062 19.0 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein DUF58 PF01882.18 gi|159041990|ref|YP_001541242.1| - 5.2e-13 49.1 0.0 1e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|159041991|ref|YP_001541243.1| - 1.7e-39 134.6 0.1 3.2e-39 133.8 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|159041991|ref|YP_001541243.1| - 3.1e-17 62.2 0.1 6.6e-17 61.1 0.1 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|159041991|ref|YP_001541243.1| - 4.8e-17 62.2 0.0 1.1e-16 61.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|159041991|ref|YP_001541243.1| - 6.6e-09 36.3 0.2 3.1e-08 34.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|159041991|ref|YP_001541243.1| - 1.3e-05 25.7 0.0 0.00012 22.6 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|159041991|ref|YP_001541243.1| - 2.4e-05 24.8 1.6 0.00027 21.4 1.6 2.5 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|159041991|ref|YP_001541243.1| - 3e-05 23.8 0.1 0.00013 21.7 0.1 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|159041991|ref|YP_001541243.1| - 7.6e-05 23.0 0.0 0.00018 21.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|159041991|ref|YP_001541243.1| - 0.00012 21.9 1.2 0.00098 18.9 1.2 2.0 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|159041991|ref|YP_001541243.1| - 0.00013 21.8 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Mg_chelatase PF01078.21 gi|159041991|ref|YP_001541243.1| - 0.00014 21.3 3.9 0.0013 18.2 1.3 2.2 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_PrkA PF08298.11 gi|159041991|ref|YP_001541243.1| - 0.00017 20.6 0.0 0.24 10.3 0.1 2.1 2 0 0 2 2 2 2 PrkA AAA domain Sigma54_activat PF00158.26 gi|159041991|ref|YP_001541243.1| - 0.00031 20.5 0.1 0.00099 18.8 0.1 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain TsaE PF02367.17 gi|159041991|ref|YP_001541243.1| - 0.00085 19.3 0.2 0.0014 18.6 0.2 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|159041991|ref|YP_001541243.1| - 0.0011 19.3 0.0 0.0024 18.3 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_lid_8 PF17868.1 gi|159041991|ref|YP_001541243.1| - 0.0015 18.4 0.4 0.0032 17.3 0.0 1.8 2 0 0 2 2 1 1 AAA lid domain ABC_tran PF00005.27 gi|159041991|ref|YP_001541243.1| - 0.0016 18.9 0.1 0.0045 17.5 0.1 1.7 2 0 0 2 2 2 1 ABC transporter TIP49 PF06068.13 gi|159041991|ref|YP_001541243.1| - 0.0021 17.3 1.1 0.0049 16.1 0.8 1.7 1 1 1 2 2 2 1 TIP49 P-loop domain MCM_lid PF17855.1 gi|159041991|ref|YP_001541243.1| - 0.0024 18.3 0.0 0.005 17.2 0.0 1.5 1 0 0 1 1 1 1 MCM AAA-lid domain AAA_2 PF07724.14 gi|159041991|ref|YP_001541243.1| - 0.003 17.7 0.0 0.013 15.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_23 PF13476.6 gi|159041991|ref|YP_001541243.1| - 0.0065 17.0 0.0 0.01 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|159041991|ref|YP_001541243.1| - 0.0066 16.6 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|159041991|ref|YP_001541243.1| - 0.0072 16.0 0.1 0.015 15.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase_C PF13335.6 gi|159041991|ref|YP_001541243.1| - 0.013 16.1 0.0 0.036 14.7 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal PduV-EutP PF10662.9 gi|159041991|ref|YP_001541243.1| - 0.014 15.2 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation T2SSE PF00437.20 gi|159041991|ref|YP_001541243.1| - 0.016 14.2 0.1 0.036 13.1 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_8 PF12780.7 gi|159041991|ref|YP_001541243.1| - 0.017 14.4 0.1 0.037 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 dNK PF01712.19 gi|159041991|ref|YP_001541243.1| - 0.031 14.1 0.1 0.053 13.4 0.1 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_7 PF12775.7 gi|159041991|ref|YP_001541243.1| - 0.033 13.7 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|159041991|ref|YP_001541243.1| - 0.034 13.2 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_14 PF13173.6 gi|159041991|ref|YP_001541243.1| - 0.039 14.0 0.0 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|159041991|ref|YP_001541243.1| - 0.052 13.1 2.5 0.078 12.5 0.5 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|159041991|ref|YP_001541243.1| - 0.052 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|159041991|ref|YP_001541243.1| - 0.063 13.5 0.2 0.11 12.7 0.2 1.4 1 0 0 1 1 1 0 AAA domain Polyoma_lg_T_C PF06431.11 gi|159041991|ref|YP_001541243.1| - 0.089 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus NACHT PF05729.12 gi|159041991|ref|YP_001541243.1| - 0.099 12.6 0.2 0.2 11.6 0.2 1.4 1 0 0 1 1 1 0 NACHT domain DUF815 PF05673.13 gi|159041991|ref|YP_001541243.1| - 0.1 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|159041991|ref|YP_001541243.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain MCM PF00493.23 gi|159041991|ref|YP_001541243.1| - 0.11 11.5 0.0 0.31 10.1 0.0 1.6 1 1 0 1 1 1 0 MCM P-loop domain cobW PF02492.19 gi|159041991|ref|YP_001541243.1| - 0.12 12.0 0.2 0.28 10.8 0.2 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_6 PF12774.7 gi|159041991|ref|YP_001541243.1| - 0.13 11.2 0.5 0.29 10.1 0.5 1.7 1 1 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region ATP_bind_1 PF03029.17 gi|159041991|ref|YP_001541243.1| - 0.13 12.0 0.1 0.29 10.9 0.1 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|159041991|ref|YP_001541243.1| - 0.15 11.9 0.1 0.29 11.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase CbiA PF01656.23 gi|159041991|ref|YP_001541243.1| - 0.2 11.7 0.4 0.59 10.2 0.1 1.8 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|159041991|ref|YP_001541243.1| - 0.36 10.5 0.9 0.58 9.8 0.2 1.6 2 0 0 2 2 1 0 AAA domain DUF4129 PF13559.6 gi|159041993|ref|YP_001541245.1| - 9.3e-07 29.0 0.0 1.7e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.6 gi|159041993|ref|YP_001541245.1| - 0.031 14.5 3.4 0.55 10.6 0.1 3.5 4 0 0 4 4 4 0 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.21 gi|159041993|ref|YP_001541245.1| - 0.14 11.6 0.1 0.33 10.4 0.1 1.6 1 0 0 1 1 1 0 Dioxygenase ATPase_2 PF01637.18 gi|159041996|ref|YP_001541248.1| - 2.7e-61 207.5 0.0 4.4e-61 206.8 0.0 1.3 2 0 0 2 2 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|159041996|ref|YP_001541248.1| - 7.1e-05 23.3 0.0 0.00014 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|159041996|ref|YP_001541248.1| - 0.0011 19.4 0.0 0.012 16.1 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159041996|ref|YP_001541248.1| - 0.0014 18.9 0.0 0.0066 16.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.9 gi|159041996|ref|YP_001541248.1| - 0.0015 17.8 0.0 0.0026 17.0 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 NB-ARC PF00931.22 gi|159041996|ref|YP_001541248.1| - 0.0031 16.8 0.0 0.0072 15.5 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain AAA_14 PF13173.6 gi|159041996|ref|YP_001541248.1| - 0.0045 17.0 0.0 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|159041996|ref|YP_001541248.1| - 0.006 16.4 0.2 0.02 14.7 0.0 1.9 3 0 0 3 3 3 1 Bacterial dnaA protein RNA_helicase PF00910.22 gi|159041996|ref|YP_001541248.1| - 0.013 15.9 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|159041996|ref|YP_001541248.1| - 0.013 15.6 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|159041996|ref|YP_001541248.1| - 0.023 13.9 0.0 0.079 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|159041996|ref|YP_001541248.1| - 0.069 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|159041996|ref|YP_001541248.1| - 0.073 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|159041996|ref|YP_001541248.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|159041996|ref|YP_001541248.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Matrilin_ccoil PF10393.9 gi|159041996|ref|YP_001541248.1| - 0.16 11.8 0.4 0.31 10.9 0.4 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin SMC_N PF02463.19 gi|159041996|ref|YP_001541248.1| - 0.17 11.3 0.0 0.37 10.2 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain HEPN PF05168.14 gi|159041997|ref|YP_001541249.1| - 4.3e-22 78.5 2.2 5.9e-22 78.0 2.2 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|159041998|ref|YP_001541250.1| - 2.7e-07 30.8 0.0 3e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|159041998|ref|YP_001541250.1| - 0.0016 18.5 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Kelch_4 PF13418.6 gi|159041998|ref|YP_001541250.1| - 0.026 14.6 0.5 0.039 14.0 0.0 1.6 1 1 1 2 2 2 0 Galactose oxidase, central domain MdcG PF10620.9 gi|159041998|ref|YP_001541250.1| - 0.051 13.4 1.4 1.5 8.6 0.1 2.1 1 1 1 2 2 2 0 Phosphoribosyl-dephospho-CoA transferase MdcG DNA_pol_B_palm PF14792.6 gi|159041998|ref|YP_001541250.1| - 0.068 13.4 0.0 0.09 13.0 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase beta palm ATPase_2 PF01637.18 gi|159041999|ref|YP_001541251.1| - 1e-60 205.6 0.0 1.8e-60 204.7 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|159041999|ref|YP_001541251.1| - 0.0016 18.8 0.0 0.0042 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|159041999|ref|YP_001541251.1| - 0.0042 17.4 0.0 0.01 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|159041999|ref|YP_001541251.1| - 0.0069 16.3 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 1 NTPase MobB PF03205.14 gi|159041999|ref|YP_001541251.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|159041999|ref|YP_001541251.1| - 0.01 15.5 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|159041999|ref|YP_001541251.1| - 0.036 13.9 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein DAP3 PF10236.9 gi|159041999|ref|YP_001541251.1| - 0.047 12.9 0.0 0.071 12.3 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 RNA_helicase PF00910.22 gi|159041999|ref|YP_001541251.1| - 0.052 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|159041999|ref|YP_001541251.1| - 0.065 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|159041999|ref|YP_001541251.1| - 0.067 13.6 0.0 0.12 12.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|159041999|ref|YP_001541251.1| - 0.073 12.2 0.0 0.14 11.3 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|159041999|ref|YP_001541251.1| - 0.083 12.9 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain SieB PF14163.6 gi|159041999|ref|YP_001541251.1| - 0.11 12.0 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Super-infection exclusion protein B Adeno_IVa2 PF02456.15 gi|159041999|ref|YP_001541251.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF86 PF01934.17 gi|159042000|ref|YP_001541252.1| - 6.2e-14 51.9 0.2 7.9e-14 51.5 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|159042001|ref|YP_001541253.1| - 1.9e-15 56.7 0.0 2.6e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|159042001|ref|YP_001541253.1| - 0.00013 22.2 0.4 0.0002 21.6 0.4 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain ATPase_2 PF01637.18 gi|159042002|ref|YP_001541254.1| - 9.2e-59 199.2 0.0 1.2e-58 198.7 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|159042002|ref|YP_001541254.1| - 0.00071 18.8 0.1 0.0018 17.5 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 gi|159042002|ref|YP_001541254.1| - 0.0012 19.3 0.0 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|159042002|ref|YP_001541254.1| - 0.0017 18.1 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159042002|ref|YP_001541254.1| - 0.022 15.2 0.0 0.055 13.9 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159042002|ref|YP_001541254.1| - 0.025 14.9 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|159042002|ref|YP_001541254.1| - 0.038 13.9 0.0 0.16 11.9 0.0 2.1 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|159042002|ref|YP_001541254.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|159042002|ref|YP_001541254.1| - 0.15 12.5 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PaREP1 PF05942.11 gi|159042003|ref|YP_001541255.1| - 7.7e-34 116.1 4.6 1.3e-33 115.3 3.5 1.9 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family PRODH PF18327.1 gi|159042003|ref|YP_001541255.1| - 0.028 14.6 2.0 0.098 12.9 2.0 1.9 1 0 0 1 1 1 0 Proline utilization A proline dehydrogenase N-terminal domain EspA PF03433.13 gi|159042003|ref|YP_001541255.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 EspA-like secreted protein tRNA-synt_His PF13393.6 gi|159042003|ref|YP_001541255.1| - 0.18 11.0 1.4 0.24 10.6 1.4 1.1 1 0 0 1 1 1 0 Histidyl-tRNA synthetase AAA_15 PF13175.6 gi|159042004|ref|YP_001541256.1| - 7.9e-22 78.5 2.5 6.2e-12 45.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|159042004|ref|YP_001541256.1| - 1.4e-10 41.5 1.0 4.8e-06 26.6 0.5 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|159042004|ref|YP_001541256.1| - 4.1e-09 37.2 0.0 2.8e-08 34.5 0.0 2.1 1 1 1 3 3 3 1 AAA domain SMC_N PF02463.19 gi|159042004|ref|YP_001541256.1| - 0.0002 20.9 0.0 0.00037 20.0 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|159042004|ref|YP_001541256.1| - 0.00028 20.6 0.0 0.00049 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|159042004|ref|YP_001541256.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3696 PF12476.8 gi|159042004|ref|YP_001541256.1| - 0.029 14.8 0.0 0.089 13.2 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3696) DUF2813 PF11398.8 gi|159042004|ref|YP_001541256.1| - 0.07 12.4 0.0 0.17 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) ARGLU PF15346.6 gi|159042004|ref|YP_001541256.1| - 0.095 12.6 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 PI_PP_I PF18363.1 gi|159042005|ref|YP_001541257.1| - 0.055 13.7 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoinositide phosphatase insertion domain Glycos_transf_1 PF00534.20 gi|159042006|ref|YP_001541258.1| - 1.3e-28 99.7 0.5 2.7e-28 98.7 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042006|ref|YP_001541258.1| - 6.9e-28 97.8 3.5 1e-27 97.2 3.5 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|159042006|ref|YP_001541258.1| - 6.3e-22 78.7 0.6 9.5e-22 78.1 0.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|159042006|ref|YP_001541258.1| - 2.2e-19 70.2 0.0 6.5e-19 68.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|159042006|ref|YP_001541258.1| - 1.8e-06 28.1 0.1 5.4e-06 26.5 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|159042006|ref|YP_001541258.1| - 0.00081 19.2 1.3 0.029 14.0 1.0 2.8 2 1 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|159042006|ref|YP_001541258.1| - 0.0011 19.3 0.0 0.0029 17.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|159042007|ref|YP_001541259.1| - 1.3e-13 51.1 2.0 2.3e-13 50.3 2.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|159042007|ref|YP_001541259.1| - 5e-08 33.1 0.0 1.1e-07 32.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|159042007|ref|YP_001541259.1| - 0.022 14.2 0.2 0.058 12.9 0.3 1.8 2 0 0 2 2 2 0 Glycosyltransferase like family 2 CH_2 PF06294.11 gi|159042007|ref|YP_001541259.1| - 0.073 13.2 0.0 2 8.6 0.0 2.4 2 0 0 2 2 2 0 CH-like domain in sperm protein Glycos_transf_1 PF00534.20 gi|159042008|ref|YP_001541260.1| - 7.8e-37 126.4 0.0 6e-36 123.5 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042008|ref|YP_001541260.1| - 3.4e-24 85.8 0.0 1.5e-23 83.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|159042008|ref|YP_001541260.1| - 1.7e-16 61.0 0.3 2.7e-16 60.4 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|159042008|ref|YP_001541260.1| - 6.2e-14 52.4 1.5 6.2e-14 52.4 1.5 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|159042008|ref|YP_001541260.1| - 1.3e-05 25.5 0.0 2.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|159042008|ref|YP_001541260.1| - 3.6e-05 23.8 0.6 0.00038 20.5 0.2 2.6 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|159042008|ref|YP_001541260.1| - 0.0044 16.8 0.2 0.014 15.1 0.2 1.9 1 1 0 1 1 1 1 Starch synthase catalytic domain Epimerase PF01370.21 gi|159042009|ref|YP_001541261.1| - 2.1e-58 197.6 0.2 2.8e-58 197.2 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159042009|ref|YP_001541261.1| - 1.9e-57 195.2 0.0 2.9e-57 194.6 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|159042009|ref|YP_001541261.1| - 1.2e-22 80.3 0.1 1.5e-22 79.9 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|159042009|ref|YP_001541261.1| - 4e-19 68.8 0.0 4.6e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|159042009|ref|YP_001541261.1| - 6.6e-19 68.1 0.1 1.1e-17 64.1 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|159042009|ref|YP_001541261.1| - 2.7e-14 53.0 1.3 6.8e-12 45.1 1.3 2.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|159042009|ref|YP_001541261.1| - 4.6e-13 49.5 0.0 7.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|159042009|ref|YP_001541261.1| - 6.8e-07 28.9 2.7 1.4e-05 24.6 1.8 2.9 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|159042009|ref|YP_001541261.1| - 0.00079 19.1 0.2 0.0022 17.6 0.2 1.9 1 1 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.20 gi|159042009|ref|YP_001541261.1| - 0.0019 18.2 0.1 0.0053 16.8 0.1 1.7 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase KR PF08659.10 gi|159042009|ref|YP_001541261.1| - 0.0061 16.5 0.3 0.05 13.5 0.3 2.2 1 1 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|159042009|ref|YP_001541261.1| - 0.0066 16.7 0.1 0.014 15.7 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|159042009|ref|YP_001541261.1| - 0.026 14.6 0.1 0.041 14.0 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|159042009|ref|YP_001541261.1| - 0.028 15.0 0.0 0.063 13.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|159042009|ref|YP_001541261.1| - 0.13 12.4 0.0 0.41 10.8 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glycos_transf_1 PF00534.20 gi|159042010|ref|YP_001541262.1| - 2.5e-21 76.0 0.0 1.3e-20 73.7 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042010|ref|YP_001541262.1| - 2.3e-20 73.3 0.6 1.5e-18 67.4 0.6 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|159042010|ref|YP_001541262.1| - 5e-13 49.6 0.0 1e-12 48.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159042010|ref|YP_001541262.1| - 3.8e-09 36.8 0.0 1.3e-08 35.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|159042010|ref|YP_001541262.1| - 9.4e-09 35.9 0.0 4e-06 27.4 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|159042010|ref|YP_001541262.1| - 0.0034 17.4 1.3 0.074 13.1 0.3 2.5 3 0 0 3 3 3 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|159042010|ref|YP_001541262.1| - 0.04 13.6 0.3 0.16 11.6 0.1 2.0 1 1 1 2 2 2 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|159042012|ref|YP_001541264.1| - 2.3e-21 76.1 0.0 4.1e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042012|ref|YP_001541264.1| - 8.3e-17 61.9 0.1 3e-16 60.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159042012|ref|YP_001541264.1| - 0.00063 20.1 0.0 0.013 15.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042012|ref|YP_001541264.1| - 0.14 12.1 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|159042013|ref|YP_001541265.1| - 8.7e-07 29.4 0.0 1.4e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|159042013|ref|YP_001541265.1| - 1.9e-06 27.5 0.0 2.9e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159042013|ref|YP_001541265.1| - 0.0031 17.8 0.0 0.008 16.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 ARPC4 PF05856.12 gi|159042014|ref|YP_001541266.1| - 0.046 13.3 0.1 0.41 10.3 0.1 2.0 2 0 0 2 2 2 0 ARP2/3 complex 20 kDa subunit (ARPC4) Glycos_transf_1 PF00534.20 gi|159042015|ref|YP_001541267.1| - 3.1e-12 46.4 0.0 6.5e-12 45.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042015|ref|YP_001541267.1| - 1.7e-07 31.7 0.0 3.4e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|159042016|ref|YP_001541268.1| - 1.2e-13 51.5 0.0 2.2e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|159042016|ref|YP_001541268.1| - 2.5e-08 33.9 0.2 3.8e-08 33.3 0.2 1.4 1 1 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|159042016|ref|YP_001541268.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_22 PF13383.6 gi|159042016|ref|YP_001541268.1| - 0.034 13.7 0.1 0.05 13.2 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain MotCF PF09158.10 gi|159042016|ref|YP_001541268.1| - 0.12 12.4 2.1 0.28 11.2 0.6 2.3 2 2 0 2 2 2 0 Bacteriophage T4 MotA, C-terminal Polysacc_deac_1 PF01522.21 gi|159042017|ref|YP_001541269.1| - 1.5e-23 83.1 0.0 4.4e-23 81.5 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|159042017|ref|YP_001541269.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Glycos_transf_1 PF00534.20 gi|159042018|ref|YP_001541270.1| - 4.4e-16 58.9 0.1 2.1e-15 56.7 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042018|ref|YP_001541270.1| - 1.9e-15 57.4 0.2 4.4e-15 56.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042018|ref|YP_001541270.1| - 0.0029 17.6 0.0 0.0085 16.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|159042018|ref|YP_001541270.1| - 0.0046 17.3 0.0 0.0095 16.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|159042019|ref|YP_001541271.1| - 1.8e-35 122.0 0.0 2.7e-35 121.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042019|ref|YP_001541271.1| - 1.3e-26 93.7 0.2 3.9e-26 92.1 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159042019|ref|YP_001541271.1| - 0.00085 19.7 0.0 0.003 17.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042019|ref|YP_001541271.1| - 0.013 15.5 0.1 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Epimerase PF01370.21 gi|159042020|ref|YP_001541272.1| - 7.6e-55 186.0 0.0 9.4e-55 185.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159042020|ref|YP_001541272.1| - 8.7e-51 173.3 0.0 2.4e-50 171.8 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|159042020|ref|YP_001541272.1| - 1.3e-21 77.0 0.0 1.6e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|159042020|ref|YP_001541272.1| - 5.3e-21 74.8 0.0 6.9e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|159042020|ref|YP_001541272.1| - 8.8e-18 64.4 0.0 4.4e-17 62.1 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|159042020|ref|YP_001541272.1| - 5.4e-10 38.9 0.7 7.6e-09 35.1 0.7 2.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|159042020|ref|YP_001541272.1| - 1e-05 25.5 0.0 1.7e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|159042020|ref|YP_001541272.1| - 3.6e-05 23.3 0.0 6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159042020|ref|YP_001541272.1| - 7.2e-05 22.8 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|159042020|ref|YP_001541272.1| - 0.00012 22.4 0.1 0.00025 21.3 0.1 1.5 2 0 0 2 2 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|159042020|ref|YP_001541272.1| - 0.00047 19.8 0.0 0.00075 19.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short_C2 PF13561.6 gi|159042020|ref|YP_001541272.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase TrkA_N PF02254.18 gi|159042020|ref|YP_001541272.1| - 0.0049 17.1 0.1 0.018 15.3 0.2 1.9 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox PF00070.27 gi|159042020|ref|YP_001541272.1| - 0.009 16.5 0.1 0.019 15.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Ldh_1_N PF00056.23 gi|159042020|ref|YP_001541272.1| - 0.018 15.2 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|159042020|ref|YP_001541272.1| - 0.022 15.0 0.1 0.046 14.0 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|159042020|ref|YP_001541272.1| - 0.043 13.1 0.1 0.096 11.9 0.1 1.5 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|159042020|ref|YP_001541272.1| - 0.049 13.5 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|159042020|ref|YP_001541272.1| - 0.051 13.2 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glycos_transf_1 PF00534.20 gi|159042021|ref|YP_001541273.1| - 5.6e-17 61.8 0.0 8.7e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042021|ref|YP_001541273.1| - 5.9e-12 46.2 0.0 1.2e-11 45.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|159042021|ref|YP_001541273.1| - 5.9e-11 43.1 5.1 5.9e-11 43.1 5.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|159042021|ref|YP_001541273.1| - 7.7e-11 42.3 4.4 2e-10 40.9 4.4 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Galactosyl_T PF01762.21 gi|159042021|ref|YP_001541273.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Galactosyltransferase PIN PF01850.21 gi|159042022|ref|YP_001541274.1| - 2.5e-06 28.0 0.1 3e-06 27.8 0.1 1.1 1 0 0 1 1 1 1 PIN domain AAA_18 PF13238.6 gi|159042023|ref|YP_001541275.1| - 4.8e-07 30.4 0.0 4.8e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|159042023|ref|YP_001541275.1| - 0.0001 22.6 0.0 0.0079 16.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|159042023|ref|YP_001541275.1| - 0.00012 22.4 0.0 0.00023 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|159042023|ref|YP_001541275.1| - 0.00013 21.9 0.1 0.00052 20.0 0.0 1.9 2 0 0 2 2 2 1 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|159042023|ref|YP_001541275.1| - 0.00018 21.2 0.0 0.0068 16.1 0.0 2.0 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|159042023|ref|YP_001541275.1| - 0.00024 21.5 0.1 0.00036 20.9 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|159042023|ref|YP_001541275.1| - 0.00067 19.8 0.0 0.0094 16.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|159042023|ref|YP_001541275.1| - 0.00095 18.2 0.0 0.0018 17.3 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Cytidylate_kin PF02224.18 gi|159042023|ref|YP_001541275.1| - 0.0011 18.7 0.1 0.0045 16.7 0.0 1.9 2 1 0 2 2 2 1 Cytidylate kinase AAA PF00004.29 gi|159042023|ref|YP_001541275.1| - 0.0015 19.0 0.0 0.0028 18.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|159042023|ref|YP_001541275.1| - 0.0043 16.8 0.1 0.014 15.1 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|159042023|ref|YP_001541275.1| - 0.005 16.8 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 NTPase SKI PF01202.22 gi|159042023|ref|YP_001541275.1| - 0.0054 16.9 0.1 0.32 11.1 0.0 2.2 2 0 0 2 2 2 1 Shikimate kinase ParA PF10609.9 gi|159042023|ref|YP_001541275.1| - 0.0062 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase RNA_helicase PF00910.22 gi|159042023|ref|YP_001541275.1| - 0.0068 16.8 0.1 0.021 15.2 0.0 1.8 2 0 0 2 2 2 1 RNA helicase AAA_5 PF07728.14 gi|159042023|ref|YP_001541275.1| - 0.0087 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|159042023|ref|YP_001541275.1| - 0.0088 16.0 0.0 0.021 14.7 0.0 1.5 2 0 0 2 2 1 1 RsgA GTPase KTI12 PF08433.10 gi|159042023|ref|YP_001541275.1| - 0.012 15.0 0.0 0.029 13.8 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NACHT PF05729.12 gi|159042023|ref|YP_001541275.1| - 0.014 15.4 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.23 gi|159042023|ref|YP_001541275.1| - 0.017 15.1 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|159042023|ref|YP_001541275.1| - 0.019 15.4 0.0 1.7 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|159042023|ref|YP_001541275.1| - 0.036 13.8 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|159042023|ref|YP_001541275.1| - 0.037 13.8 0.2 0.081 12.7 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|159042023|ref|YP_001541275.1| - 0.063 12.6 0.0 0.097 11.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Glyco_transf_4 PF13439.6 gi|159042023|ref|YP_001541275.1| - 0.064 13.2 0.0 0.089 12.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AAA_25 PF13481.6 gi|159042023|ref|YP_001541275.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|159042023|ref|YP_001541275.1| - 0.075 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|159042023|ref|YP_001541275.1| - 0.088 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|159042023|ref|YP_001541275.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|159042023|ref|YP_001541275.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|159042023|ref|YP_001541275.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 gi|159042023|ref|YP_001541275.1| - 0.17 11.9 0.0 1.7 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|159042023|ref|YP_001541275.1| - 0.18 11.0 0.1 0.44 9.7 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain CLP1_P PF16575.5 gi|159042023|ref|YP_001541275.1| - 0.27 11.0 0.4 1.4 8.7 0.0 2.2 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NTP_transf_5 PF14907.6 gi|159042024|ref|YP_001541276.1| - 2.9e-08 33.7 0.1 4.1e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Polysacc_synt PF01943.17 gi|159042025|ref|YP_001541277.1| - 1.3e-10 41.1 33.7 1.3e-10 41.1 33.7 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Exosortase_EpsH PF09721.10 gi|159042026|ref|YP_001541278.1| - 0.073 12.6 1.9 0.078 12.5 1.9 1.0 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) DUF1616 PF07760.11 gi|159042027|ref|YP_001541279.1| - 5.3e-14 52.3 2.0 8.5e-14 51.6 2.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF5589 PF17672.1 gi|159042027|ref|YP_001541279.1| - 0.19 11.7 2.8 2.5 8.1 0.2 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5589) DUF1616 PF07760.11 gi|159042028|ref|YP_001541280.1| - 1.2e-31 110.2 5.6 1.5e-31 109.9 5.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.16 gi|159042028|ref|YP_001541280.1| - 0.034 13.1 8.0 0.045 12.7 8.0 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF4395 PF14340.6 gi|159042028|ref|YP_001541280.1| - 0.76 10.1 5.2 5 7.5 5.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) Glycos_transf_2 PF00535.26 gi|159042029|ref|YP_001541281.1| - 1.6e-18 67.1 0.0 2.4e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|159042029|ref|YP_001541281.1| - 1.3e-05 25.2 0.0 5.7e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|159042029|ref|YP_001541281.1| - 0.026 15.0 0.0 0.05 14.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|159042029|ref|YP_001541281.1| - 0.042 13.8 0.0 0.091 12.7 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|159042030|ref|YP_001541282.1| - 1.2e-09 38.2 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|159042030|ref|YP_001541282.1| - 0.033 14.1 0.1 0.089 12.7 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family group 2 Methyltransf_21 PF05050.12 gi|159042031|ref|YP_001541283.1| - 7.4e-14 52.1 0.0 1e-13 51.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|159042031|ref|YP_001541283.1| - 7.3e-08 32.4 0.1 1.1e-07 31.8 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein KH_6 PF15985.5 gi|159042031|ref|YP_001541283.1| - 0.0028 18.0 0.1 0.0084 16.4 0.1 1.7 1 0 0 1 1 1 1 KH domain Methyltransf_22 PF13383.6 gi|159042031|ref|YP_001541283.1| - 0.082 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_21 PF05050.12 gi|159042032|ref|YP_001541284.1| - 1.6e-16 60.8 0.0 2.5e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|159042032|ref|YP_001541284.1| - 1.4e-06 28.2 0.0 2.5e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|159042032|ref|YP_001541284.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.20 gi|159042033|ref|YP_001541285.1| - 9.6e-32 109.9 0.0 2.8e-31 108.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042033|ref|YP_001541285.1| - 5e-23 82.0 0.0 1.1e-22 80.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|159042033|ref|YP_001541285.1| - 2.8e-09 37.3 0.0 5.1e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042033|ref|YP_001541285.1| - 2.7e-07 30.8 0.3 7.5e-07 29.3 0.2 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|159042033|ref|YP_001541285.1| - 0.12 12.8 0.1 0.24 11.8 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.26 gi|159042034|ref|YP_001541286.1| - 0.00012 21.9 0.0 0.00022 21.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Cas6b_N PF17955.1 gi|159042034|ref|YP_001541286.1| - 0.093 12.8 0.5 0.22 11.6 0.5 1.7 1 0 0 1 1 1 0 Cas6b N-terminal domain dTDP_sugar_isom PF00908.17 gi|159042035|ref|YP_001541287.1| - 4.2e-68 228.3 0.0 4.7e-68 228.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Epimerase PF01370.21 gi|159042036|ref|YP_001541288.1| - 2.9e-34 118.6 0.0 3.5e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|159042036|ref|YP_001541288.1| - 1.3e-19 70.8 0.0 2.1e-19 70.1 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|159042036|ref|YP_001541288.1| - 2.1e-14 53.2 0.0 2.4e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|159042036|ref|YP_001541288.1| - 6.3e-13 48.5 0.0 8.8e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|159042036|ref|YP_001541288.1| - 5.4e-09 36.2 0.0 1.2e-08 35.0 0.0 1.7 1 1 1 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|159042036|ref|YP_001541288.1| - 1.1e-06 28.4 0.0 1.3e-05 24.9 0.0 2.2 1 1 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|159042036|ref|YP_001541288.1| - 0.00025 20.3 0.1 0.11 11.6 0.1 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|159042036|ref|YP_001541288.1| - 0.011 15.0 0.1 0.35 10.0 0.0 2.2 2 0 0 2 2 2 0 Male sterility protein NTP_transferase PF00483.23 gi|159042037|ref|YP_001541289.1| - 1.4e-36 126.4 0.0 1.7e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|159042037|ref|YP_001541289.1| - 3.4e-10 40.5 0.0 4.5e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Bactofilin PF04519.13 gi|159042037|ref|YP_001541289.1| - 0.00075 19.7 1.2 0.0012 19.1 0.6 1.6 2 0 0 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|159042037|ref|YP_001541289.1| - 0.0043 16.7 0.9 0.086 12.6 0.0 3.3 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|159042037|ref|YP_001541289.1| - 0.0082 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|159042037|ref|YP_001541289.1| - 0.026 14.3 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt PF01943.17 gi|159042038|ref|YP_001541290.1| - 0.0018 17.7 55.7 0.0033 16.8 34.9 3.6 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein GtrA PF04138.14 gi|159042038|ref|YP_001541290.1| - 0.0056 16.9 2.9 0.0056 16.9 2.9 5.0 3 1 1 4 4 4 1 GtrA-like protein PDDEXK_10 PF07788.11 gi|159042039|ref|YP_001541291.1| - 2.8e-32 110.5 2.0 7.4e-32 109.1 2.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|159042039|ref|YP_001541291.1| - 1.2e-24 86.2 2.2 2.1e-23 82.2 0.2 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF3782) ScsC_N PF18312.1 gi|159042039|ref|YP_001541291.1| - 0.0068 16.2 5.3 0.017 14.9 0.8 3.1 2 1 1 3 3 3 1 Copper resistance protein ScsC N-terminal domain ABC_tran_CTD PF16326.5 gi|159042039|ref|YP_001541291.1| - 0.018 15.3 2.8 0.086 13.1 2.8 2.0 1 1 0 1 1 1 0 ABC transporter C-terminal domain rRNA_proc-arch PF13234.6 gi|159042039|ref|YP_001541291.1| - 0.03 14.3 0.7 0.042 13.8 0.7 1.3 1 0 0 1 1 1 0 rRNA-processing arch domain SlyX PF04102.12 gi|159042039|ref|YP_001541291.1| - 0.052 14.2 1.1 0.12 13.0 1.1 1.6 1 0 0 1 1 1 0 SlyX GlnE PF03710.15 gi|159042039|ref|YP_001541291.1| - 0.14 11.6 0.7 0.19 11.1 0.7 1.2 1 0 0 1 1 1 0 Glutamate-ammonia ligase adenylyltransferase Oxidored_molyb PF00174.19 gi|159042042|ref|YP_001541294.1| - 6.8e-40 136.5 0.1 1.1e-39 135.8 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Spo0A_C PF08769.11 gi|159042042|ref|YP_001541294.1| - 0.00064 19.8 0.0 0.011 15.8 0.0 2.2 2 0 0 2 2 2 1 Sporulation initiation factor Spo0A C terminal CytB6-F_Fe-S PF08802.10 gi|159042042|ref|YP_001541294.1| - 0.086 12.9 0.7 0.25 11.4 0.7 1.8 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.9 gi|159042042|ref|YP_001541294.1| - 1.7 8.6 7.0 0.21 11.5 2.9 1.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Ni_hydr_CYTB PF01292.20 gi|159042043|ref|YP_001541295.1| - 0.058 13.0 6.9 0.038 13.6 4.9 1.7 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DrsE PF02635.15 gi|159042044|ref|YP_001541296.1| - 0.0037 17.6 0.0 0.0038 17.6 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family Copper-bind PF00127.20 gi|159042045|ref|YP_001541297.1| - 1.6e-06 28.4 0.0 4.5e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.11 gi|159042045|ref|YP_001541297.1| - 0.00017 21.1 4.6 0.0014 18.1 4.6 2.4 1 1 0 1 1 1 1 Sulfocyanin (SoxE) domain Cu-oxidase_3 PF07732.15 gi|159042045|ref|YP_001541297.1| - 0.0017 18.3 1.8 0.0051 16.8 0.6 2.1 2 0 0 2 2 2 1 Multicopper oxidase DUF4083 PF13314.6 gi|159042046|ref|YP_001541298.1| - 0.014 15.3 0.7 0.017 15.0 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF4834 PF16118.5 gi|159042046|ref|YP_001541298.1| - 0.056 14.4 0.3 0.071 14.1 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) HemY_N PF07219.13 gi|159042046|ref|YP_001541298.1| - 0.14 12.3 0.1 0.15 12.2 0.1 1.1 1 0 0 1 1 1 0 HemY protein N-terminus Shisa PF13908.6 gi|159042046|ref|YP_001541298.1| - 0.14 12.3 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator ODV-E18 PF10717.9 gi|159042046|ref|YP_001541298.1| - 0.28 11.1 0.3 0.35 10.8 0.3 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF2207 PF09972.9 gi|159042046|ref|YP_001541298.1| - 0.53 9.0 1.8 0.51 9.0 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2873 PF11395.8 gi|159042046|ref|YP_001541298.1| - 6.7 6.7 10.3 9.6 6.2 10.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) MarR_2 PF12802.7 gi|159042047|ref|YP_001541299.1| - 1.5e-09 37.6 0.1 2.9e-09 36.7 0.1 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|159042047|ref|YP_001541299.1| - 1.2e-05 25.1 0.9 1.7e-05 24.6 0.4 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|159042047|ref|YP_001541299.1| - 6.2e-05 22.5 0.1 0.00011 21.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|159042047|ref|YP_001541299.1| - 0.00029 20.7 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|159042047|ref|YP_001541299.1| - 0.00072 19.4 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|159042047|ref|YP_001541299.1| - 0.0019 18.2 0.1 0.0028 17.6 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|159042047|ref|YP_001541299.1| - 0.014 15.6 0.1 0.027 14.7 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|159042047|ref|YP_001541299.1| - 0.017 15.6 0.2 0.16 12.5 0.1 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|159042047|ref|YP_001541299.1| - 0.018 15.1 0.1 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RhoGAP PF00620.27 gi|159042047|ref|YP_001541299.1| - 0.032 14.1 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 RhoGAP domain HTH_IclR PF09339.10 gi|159042047|ref|YP_001541299.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_micro PF17007.5 gi|159042047|ref|YP_001541299.1| - 0.069 12.0 0.2 0.091 11.6 0.2 1.1 1 0 0 1 1 1 0 HTH-like TFIIE_alpha PF02002.17 gi|159042047|ref|YP_001541299.1| - 0.077 12.9 0.4 0.12 12.3 0.4 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit KORA PF16509.5 gi|159042047|ref|YP_001541299.1| - 0.11 12.8 0.0 0.31 11.4 0.0 1.7 1 1 1 2 2 2 0 TrfB plasmid transcriptional repressor Sigma70_r4 PF04545.16 gi|159042047|ref|YP_001541299.1| - 0.13 11.8 0.7 0.21 11.1 0.7 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|159042047|ref|YP_001541299.1| - 0.14 12.1 0.5 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2207 PF09972.9 gi|159042047|ref|YP_001541299.1| - 8.5 5.0 6.6 12 4.5 6.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ATPase_2 PF01637.18 gi|159042048|ref|YP_001541300.1| - 1.1e-15 58.2 0.0 1.4e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|159042048|ref|YP_001541300.1| - 6.5e-10 39.2 0.1 0.00076 19.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|159042048|ref|YP_001541300.1| - 1.2e-08 35.3 0.1 3.1e-08 34.0 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|159042048|ref|YP_001541300.1| - 0.0038 17.6 0.2 0.0099 16.3 0.1 1.7 2 1 0 2 2 2 1 AAA ATPase domain HTH_20 PF12840.7 gi|159042050|ref|YP_001541302.1| - 3.4e-10 39.8 0.2 5.1e-10 39.3 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|159042050|ref|YP_001541302.1| - 2.4e-09 36.9 0.6 3.9e-09 36.2 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|159042050|ref|YP_001541302.1| - 1.3e-06 28.2 0.3 1.7e-06 27.8 0.3 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|159042050|ref|YP_001541302.1| - 2.9e-06 27.1 0.1 4.4e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|159042050|ref|YP_001541302.1| - 8.8e-06 25.2 0.2 1.6e-05 24.3 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|159042050|ref|YP_001541302.1| - 0.0004 20.7 0.2 0.00064 20.0 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|159042050|ref|YP_001541302.1| - 0.00083 19.2 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|159042050|ref|YP_001541302.1| - 0.0011 19.1 0.3 0.0016 18.6 0.3 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|159042050|ref|YP_001541302.1| - 0.0022 17.8 0.2 0.0037 17.0 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_CodY PF08222.11 gi|159042050|ref|YP_001541302.1| - 0.0033 17.0 0.2 0.0053 16.3 0.2 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|159042050|ref|YP_001541302.1| - 0.0042 16.9 0.2 0.0079 16.0 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|159042050|ref|YP_001541302.1| - 0.0071 16.3 0.3 0.011 15.6 0.3 1.3 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|159042050|ref|YP_001541302.1| - 0.017 15.3 0.1 0.027 14.7 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.12 gi|159042050|ref|YP_001541302.1| - 0.021 15.2 0.1 0.032 14.6 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.17 gi|159042050|ref|YP_001541302.1| - 0.024 14.5 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TMEM132 PF16070.5 gi|159042050|ref|YP_001541302.1| - 0.024 14.0 0.0 0.027 13.8 0.0 1.0 1 0 0 1 1 1 0 Transmembrane protein family 132 HTH_Mga PF08280.11 gi|159042050|ref|YP_001541302.1| - 0.032 14.3 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|159042050|ref|YP_001541302.1| - 0.059 13.4 0.2 0.091 12.7 0.2 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|159042050|ref|YP_001541302.1| - 0.13 12.1 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Halogen_Hydrol PF10112.9 gi|159042051|ref|YP_001541303.1| - 0.0024 17.9 0.3 0.0026 17.8 0.3 1.0 1 0 0 1 1 1 1 5-bromo-4-chloroindolyl phosphate hydrolysis protein Seryl_tRNA_N PF02403.22 gi|159042051|ref|YP_001541303.1| - 0.0024 18.1 3.3 0.0029 17.8 3.3 1.1 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain S_4TM PF18159.1 gi|159042051|ref|YP_001541303.1| - 0.046 13.0 0.1 0.05 12.9 0.1 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain SlyX PF04102.12 gi|159042051|ref|YP_001541303.1| - 0.09 13.4 1.4 0.12 13.0 1.4 1.2 1 0 0 1 1 1 0 SlyX DUF5320 PF17253.2 gi|159042051|ref|YP_001541303.1| - 0.16 13.1 0.0 0.17 13.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5320) DivIC PF04977.15 gi|159042051|ref|YP_001541303.1| - 0.2 11.5 3.6 0.86 9.4 2.1 2.1 1 1 1 2 2 2 0 Septum formation initiator PspB PF06667.12 gi|159042051|ref|YP_001541303.1| - 1.6 8.8 8.1 0.17 12.0 3.3 1.9 1 1 1 2 2 2 0 Phage shock protein B DUF4097 PF13349.6 gi|159042052|ref|YP_001541304.1| - 0.00057 19.3 1.3 0.00092 18.6 1.3 1.6 1 1 0 1 1 1 1 Putative adhesin DLH PF01738.18 gi|159042053|ref|YP_001541305.1| - 4.7e-57 193.0 0.0 1.1e-55 188.6 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|159042053|ref|YP_001541305.1| - 1.8e-05 24.8 0.3 0.001 19.1 0.2 2.5 2 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 gi|159042053|ref|YP_001541305.1| - 5.2e-05 22.6 0.0 0.022 14.1 0.0 2.6 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|159042053|ref|YP_001541305.1| - 0.01 15.5 0.0 0.26 10.9 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|159042053|ref|YP_001541305.1| - 0.065 12.7 0.0 0.28 10.6 0.0 1.9 1 1 1 2 2 2 0 Prolyl oligopeptidase family DUF5377 PF17347.2 gi|159042053|ref|YP_001541305.1| - 0.097 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5377) Thioesterase PF00975.20 gi|159042053|ref|YP_001541305.1| - 0.17 12.0 0.0 0.49 10.5 0.0 1.7 2 0 0 2 2 2 0 Thioesterase domain AA_permease_2 PF13520.6 gi|159042054|ref|YP_001541306.1| - 6.5e-38 130.7 45.8 1.3e-37 129.7 45.8 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|159042054|ref|YP_001541306.1| - 3.3e-18 65.5 49.0 1.8e-17 63.1 49.0 1.9 1 1 0 1 1 1 1 Amino acid permease AcetylCoA_hyd_C PF13336.6 gi|159042054|ref|YP_001541306.1| - 0.026 14.4 0.1 0.051 13.5 0.1 1.4 1 0 0 1 1 1 0 Acetyl-CoA hydrolase/transferase C-terminal domain SBP_bac_5 PF00496.22 gi|159042056|ref|YP_001541308.1| - 6.9e-34 117.4 4.9 6.9e-34 117.4 4.9 1.8 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle GFO_IDH_MocA PF01408.22 gi|159042057|ref|YP_001541309.1| - 1.6e-25 90.3 0.1 2.5e-25 89.6 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159042057|ref|YP_001541309.1| - 1.5e-06 28.2 0.0 2.5e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|159042057|ref|YP_001541309.1| - 6.4e-06 25.9 0.0 1.4e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 Putative oxidoreductase C terminal domain CoA_binding PF02629.19 gi|159042057|ref|YP_001541309.1| - 0.00091 19.9 0.8 0.002 18.8 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 gi|159042057|ref|YP_001541309.1| - 0.0011 19.6 0.1 0.0021 18.6 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|159042057|ref|YP_001541309.1| - 0.002 18.3 0.1 0.0032 17.6 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_3 PF03447.16 gi|159042057|ref|YP_001541309.1| - 0.022 15.4 0.5 0.043 14.5 0.5 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|159042057|ref|YP_001541309.1| - 0.04 13.3 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|159042057|ref|YP_001541309.1| - 0.09 13.0 0.1 0.23 11.7 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain AP_endonuc_2 PF01261.24 gi|159042058|ref|YP_001541310.1| - 1.4e-31 109.5 0.0 2.5e-31 108.8 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|159042058|ref|YP_001541310.1| - 0.16 11.7 0.0 0.37 10.5 0.0 1.7 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus GFO_IDH_MocA PF01408.22 gi|159042059|ref|YP_001541311.1| - 2.9e-21 76.5 0.0 4.4e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|159042059|ref|YP_001541311.1| - 1e-09 38.4 0.0 1.9e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|159042059|ref|YP_001541311.1| - 0.006 17.2 0.0 0.011 16.4 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ox_reductase_C PF08635.10 gi|159042059|ref|YP_001541311.1| - 0.077 12.7 0.0 0.32 10.7 0.0 2.0 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain AP_endonuc_2 PF01261.24 gi|159042060|ref|YP_001541312.1| - 4.8e-19 68.6 0.0 6.6e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|159042060|ref|YP_001541312.1| - 0.0017 18.0 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus PepX_C PF08530.10 gi|159042061|ref|YP_001541313.1| - 9.7e-30 104.2 0.0 1.4e-29 103.7 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S15 PF02129.18 gi|159042061|ref|YP_001541313.1| - 1.5e-28 100.2 0.0 2.1e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 gi|159042061|ref|YP_001541313.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Prolyl oligopeptidase family Nramp PF01566.18 gi|159042062|ref|YP_001541314.1| - 1.9e-37 129.1 21.3 2.5e-37 128.7 21.3 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MitoNEET_N PF10660.9 gi|159042063|ref|YP_001541315.1| - 0.032 14.2 0.1 0.032 14.2 0.1 3.0 4 0 0 4 4 4 0 Iron-containing outer mitochondrial membrane protein N-terminus Cas_Cas4 PF01930.17 gi|159042064|ref|YP_001541316.1| - 4.6e-06 26.8 0.0 5.4e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 Csa1 PF06023.12 gi|159042064|ref|YP_001541316.1| - 0.0034 16.8 0.0 0.0043 16.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|159042064|ref|YP_001541316.1| - 0.021 14.8 0.2 0.044 13.7 0.2 1.5 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily CRISPR_Cas6 PF10040.9 gi|159042065|ref|YP_001541317.1| - 3e-11 43.8 0.0 2e-10 41.2 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Pyr_redox_2 PF07992.14 gi|159042066|ref|YP_001541318.1| - 2.7e-55 187.7 0.3 3.7e-55 187.2 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|159042066|ref|YP_001541318.1| - 4.9e-31 107.3 0.5 8.3e-31 106.5 0.5 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|159042066|ref|YP_001541318.1| - 5.9e-12 45.4 2.6 2.4e-10 40.2 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159042066|ref|YP_001541318.1| - 6.8e-10 39.4 3.3 1.8e-09 38.0 0.6 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|159042066|ref|YP_001541318.1| - 4e-06 26.2 3.9 0.0038 16.4 0.2 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|159042066|ref|YP_001541318.1| - 0.00012 20.9 0.7 0.053 12.2 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein Amino_oxidase PF01593.24 gi|159042066|ref|YP_001541318.1| - 0.16 11.2 0.1 0.28 10.4 0.1 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|159042066|ref|YP_001541318.1| - 0.85 8.6 5.0 5.9 5.9 0.7 2.8 2 1 1 3 3 3 0 FAD binding domain DAO PF01266.24 gi|159042066|ref|YP_001541318.1| - 7.2 6.1 7.9 0.26 10.8 0.4 2.2 2 1 1 3 3 3 0 FAD dependent oxidoreductase YHS PF04945.13 gi|159042067|ref|YP_001541319.1| - 6.2e-06 26.2 0.1 9.9e-06 25.6 0.1 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|159042067|ref|YP_001541319.1| - 0.00012 22.0 2.7 0.00025 20.9 2.7 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ta0938 PF11494.8 gi|159042067|ref|YP_001541319.1| - 0.00026 21.2 0.2 0.00026 21.2 0.2 1.1 1 0 0 1 1 1 1 Ta0938 ATPase-cat_bd PF12156.8 gi|159042067|ref|YP_001541319.1| - 0.00033 21.3 3.8 0.00039 21.1 3.8 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Metallothio_Pro PF02069.16 gi|159042067|ref|YP_001541319.1| - 0.0014 18.9 2.0 0.0017 18.5 2.0 1.3 1 1 0 1 1 1 1 Prokaryotic metallothionein zf-FPG_IleRS PF06827.14 gi|159042067|ref|YP_001541319.1| - 0.0019 18.0 6.7 0.016 15.0 6.7 2.0 1 1 0 1 1 1 1 Zinc finger found in FPG and IleRS Arc_trans_TRASH PF08394.10 gi|159042067|ref|YP_001541319.1| - 0.0036 17.6 1.1 0.0053 17.1 1.1 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain Zn_ribbon_recom PF13408.6 gi|159042067|ref|YP_001541319.1| - 0.013 16.0 2.8 0.018 15.5 2.8 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn_ribbon_2 PF12674.7 gi|159042067|ref|YP_001541319.1| - 0.048 14.3 1.1 0.056 14.1 1.1 1.1 1 0 0 1 1 1 0 Putative zinc ribbon domain DUF2116 PF09889.9 gi|159042067|ref|YP_001541319.1| - 0.055 13.5 1.5 3.1 7.9 0.3 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Terminase_GpA PF05876.12 gi|159042067|ref|YP_001541319.1| - 0.22 10.0 1.0 0.22 10.0 1.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) CpXC PF14353.6 gi|159042067|ref|YP_001541319.1| - 0.56 10.3 3.6 3.3 7.8 0.6 2.0 1 1 1 2 2 2 0 CpXC protein AhpC-TSA PF00578.21 gi|159042069|ref|YP_001541321.1| - 3.9e-05 23.6 0.0 9.8e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 gi|159042069|ref|YP_001541321.1| - 0.00071 19.3 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|159042069|ref|YP_001541321.1| - 0.01 16.1 0.1 0.024 15.0 0.1 1.6 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin PF00085.20 gi|159042069|ref|YP_001541321.1| - 0.055 13.5 0.0 0.33 11.0 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin HTH_5 PF01022.20 gi|159042070|ref|YP_001541322.1| - 6.2e-14 51.6 1.0 9.7e-14 51.0 1.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|159042070|ref|YP_001541322.1| - 2.4e-07 30.5 0.0 3.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|159042070|ref|YP_001541322.1| - 8.8e-07 28.9 0.2 1.5e-06 28.2 0.1 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|159042070|ref|YP_001541322.1| - 0.00015 21.3 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|159042070|ref|YP_001541322.1| - 0.0009 19.4 0.0 0.0014 18.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|159042070|ref|YP_001541322.1| - 0.0013 18.4 0.4 0.0031 17.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|159042070|ref|YP_001541322.1| - 0.0017 18.2 0.1 0.0027 17.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|159042070|ref|YP_001541322.1| - 0.0025 17.7 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_9 PF08221.11 gi|159042070|ref|YP_001541322.1| - 0.0033 17.5 0.9 0.0057 16.7 0.4 1.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain KorB PF08535.10 gi|159042070|ref|YP_001541322.1| - 0.005 16.8 0.0 0.0084 16.1 0.0 1.4 1 0 0 1 1 1 1 KorB domain Rrf2 PF02082.20 gi|159042070|ref|YP_001541322.1| - 0.0085 16.4 0.1 0.013 15.8 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|159042070|ref|YP_001541322.1| - 0.013 15.4 0.0 0.023 14.5 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit LexA_DNA_bind PF01726.16 gi|159042070|ref|YP_001541322.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.6 gi|159042070|ref|YP_001541322.1| - 0.021 15.0 0.0 0.039 14.1 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|159042070|ref|YP_001541322.1| - 0.041 13.7 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Penicillinase_R PF03965.16 gi|159042070|ref|YP_001541322.1| - 0.057 13.8 0.0 0.078 13.3 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF4423 PF14394.6 gi|159042070|ref|YP_001541322.1| - 0.079 12.7 0.0 0.095 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PaaX PF07848.12 gi|159042070|ref|YP_001541322.1| - 0.079 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.22 gi|159042070|ref|YP_001541322.1| - 0.081 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Cas_APE2256 PF09651.10 gi|159042071|ref|YP_001541323.1| - 9.4e-45 151.9 0.0 1.6e-44 151.1 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) CIF PF16374.5 gi|159042071|ref|YP_001541323.1| - 0.01 16.0 0.0 2 8.5 0.0 2.4 2 0 0 2 2 2 2 Cycle inhibiting factor (CIF) Cas_DxTHG PF09455.10 gi|159042072|ref|YP_001541324.1| - 2e-53 182.2 6.0 2.6e-53 181.9 6.0 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family NurA PF09376.10 gi|159042073|ref|YP_001541325.1| - 1.8e-06 27.9 0.0 3.8e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|159042074|ref|YP_001541326.1| - 6.1e-11 42.9 2.5 6.5e-10 39.5 2.5 2.2 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|159042074|ref|YP_001541326.1| - 2.2e-10 39.8 0.2 1.7e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.29 gi|159042074|ref|YP_001541326.1| - 8.2e-07 29.5 0.1 0.00056 20.3 0.1 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|159042074|ref|YP_001541326.1| - 8.9e-07 28.5 0.1 0.00013 21.4 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|159042074|ref|YP_001541326.1| - 1.2e-06 28.8 0.0 0.099 12.9 0.0 2.9 2 1 1 3 3 3 2 AAA domain TrwB_AAD_bind PF10412.9 gi|159042074|ref|YP_001541326.1| - 3.1e-06 26.4 0.0 1.8e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|159042074|ref|YP_001541326.1| - 2.3e-05 23.6 0.0 7.1e-05 22.0 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF2075 PF09848.9 gi|159042074|ref|YP_001541326.1| - 0.00014 21.3 0.0 0.24 10.6 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|159042074|ref|YP_001541326.1| - 0.00015 21.1 0.2 0.0015 17.8 0.2 2.3 1 1 0 1 1 1 1 Zeta toxin Zot PF05707.12 gi|159042074|ref|YP_001541326.1| - 0.00025 20.8 0.0 0.0032 17.1 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_7 PF12775.7 gi|159042074|ref|YP_001541326.1| - 0.00052 19.6 0.0 0.004 16.7 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region DUF1985 PF09331.11 gi|159042074|ref|YP_001541326.1| - 0.0007 19.6 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1985) ResIII PF04851.15 gi|159042074|ref|YP_001541326.1| - 0.0018 18.3 0.1 0.44 10.5 0.1 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|159042074|ref|YP_001541326.1| - 0.0022 17.8 0.1 0.92 9.3 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase SRP54 PF00448.22 gi|159042074|ref|YP_001541326.1| - 0.0023 17.6 0.0 0.004 16.8 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.7 gi|159042074|ref|YP_001541326.1| - 0.0034 16.3 0.1 0.086 11.7 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.6 gi|159042074|ref|YP_001541326.1| - 0.0049 17.3 0.0 0.089 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain Pox_A32 PF04665.12 gi|159042074|ref|YP_001541326.1| - 0.0083 15.6 0.0 0.022 14.2 0.0 1.8 2 0 0 2 2 1 1 Poxvirus A32 protein AAA_33 PF13671.6 gi|159042074|ref|YP_001541326.1| - 0.014 15.6 0.0 0.1 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain HTH_Tnp_4 PF13613.6 gi|159042074|ref|YP_001541326.1| - 0.02 14.6 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MlaC PF05494.12 gi|159042074|ref|YP_001541326.1| - 0.026 14.3 0.9 0.071 12.9 0.9 1.8 1 1 0 1 1 1 0 MlaC protein NACHT PF05729.12 gi|159042074|ref|YP_001541326.1| - 0.035 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 gi|159042074|ref|YP_001541326.1| - 0.038 13.5 0.0 0.23 10.9 0.0 2.3 2 1 1 3 3 3 0 PhoH-like protein NusG_add PF18298.1 gi|159042074|ref|YP_001541326.1| - 0.04 14.1 0.1 0.12 12.6 0.1 1.8 1 0 0 1 1 1 0 NusG additional domain HTH_10 PF04967.12 gi|159042074|ref|YP_001541326.1| - 0.091 12.6 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain cobW PF02492.19 gi|159042074|ref|YP_001541326.1| - 0.093 12.3 0.0 0.26 10.8 0.0 1.8 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain HTH_23 PF13384.6 gi|159042074|ref|YP_001541326.1| - 0.095 12.5 0.0 0.34 10.8 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain AAA_18 PF13238.6 gi|159042074|ref|YP_001541326.1| - 0.14 12.7 0.0 0.38 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|159042074|ref|YP_001541326.1| - 0.15 11.5 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI UvrD-helicase PF00580.21 gi|159042074|ref|YP_001541326.1| - 0.19 11.2 0.2 0.58 9.6 0.0 1.8 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain Cas_APE2256 PF09651.10 gi|159042075|ref|YP_001541327.1| - 1.5e-29 102.6 0.0 2e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) RAMPs PF03787.15 gi|159042076|ref|YP_001541328.1| - 4.2e-08 33.5 0.0 1.1e-06 28.9 0.0 2.5 1 1 0 1 1 1 1 RAMP superfamily CRISPR_assoc PF08798.11 gi|159042076|ref|YP_001541328.1| - 0.053 13.6 0.0 0.084 13.0 0.0 1.2 1 0 0 1 1 1 0 CRISPR associated protein RAMPs PF03787.15 gi|159042077|ref|YP_001541329.1| - 2.7e-07 30.8 0.0 1.2e-06 28.7 0.0 1.9 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|159042078|ref|YP_001541330.1| - 4e-09 36.8 0.2 1.1e-08 35.4 0.2 1.6 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) NAD_binding_6 PF08030.12 gi|159042078|ref|YP_001541330.1| - 0.072 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Ferric reductase NAD binding domain RAMPs PF03787.15 gi|159042079|ref|YP_001541331.1| - 7.8e-22 78.4 0.0 1.4e-21 77.5 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily SIL1 PF16782.5 gi|159042079|ref|YP_001541331.1| - 0.013 14.7 0.1 0.023 13.9 0.1 1.3 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 DUF3692 PF12469.8 gi|159042080|ref|YP_001541332.1| - 1.1e-28 99.7 0.0 3.3e-28 98.1 0.0 1.9 1 0 0 1 1 1 1 CRISPR-associated protein Cdh1_DBD_1 PF18196.1 gi|159042080|ref|YP_001541332.1| - 0.28 11.5 3.3 0.82 10.0 0.2 2.9 2 0 0 2 2 2 0 Chromodomain helicase DNA-binding domain 1 Fur_reg_FbpB PF13040.6 gi|159042080|ref|YP_001541332.1| - 0.66 9.6 9.3 1.8 8.2 9.3 1.8 1 0 0 1 1 1 0 Fur-regulated basic protein B Cas_Cmr3 PF09700.10 gi|159042081|ref|YP_001541333.1| - 2.2e-10 40.5 0.0 1.3e-06 28.1 0.0 2.1 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) Penicillinase_R PF03965.16 gi|159042082|ref|YP_001541334.1| - 1.6e-07 31.7 0.1 3.1e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor DUF4817 PF16087.5 gi|159042082|ref|YP_001541334.1| - 0.013 15.3 0.1 0.022 14.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain (DUF4817) Stork_head PF10264.9 gi|159042082|ref|YP_001541334.1| - 0.017 15.3 0.0 0.037 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix Storkhead-box1 domain MMR_HSR1_C PF08438.10 gi|159042082|ref|YP_001541334.1| - 0.026 15.1 0.1 0.057 14.0 0.1 1.6 2 0 0 2 2 2 0 GTPase of unknown function C-terminal TBPIP PF07106.13 gi|159042082|ref|YP_001541334.1| - 0.067 13.1 0.3 0.19 11.7 0.3 1.8 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain LexA_DNA_bind PF01726.16 gi|159042082|ref|YP_001541334.1| - 0.091 12.5 0.0 0.26 11.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.19 gi|159042082|ref|YP_001541334.1| - 0.097 12.6 0.1 0.24 11.3 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DevR PF01905.16 gi|159042084|ref|YP_001541336.1| - 1.4e-87 293.2 0.2 1.7e-87 292.9 0.2 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 PBS_linker_poly PF00427.21 gi|159042086|ref|YP_001541338.1| - 0.069 13.2 0.3 0.6 10.1 0.0 2.3 2 0 0 2 2 2 0 Phycobilisome Linker polypeptide DEAD PF00270.29 gi|159042087|ref|YP_001541339.1| - 1.6e-10 41.0 0.1 1.6e-08 34.5 0.0 2.5 2 1 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|159042087|ref|YP_001541339.1| - 7.6e-10 39.1 3.1 2.2e-09 37.6 1.7 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|159042087|ref|YP_001541339.1| - 1.3e-05 25.3 0.2 5.5e-05 23.2 0.0 2.2 1 1 2 3 3 3 1 Type III restriction enzyme, res subunit HD PF01966.22 gi|159042088|ref|YP_001541340.1| - 0.0011 19.1 0.9 0.004 17.4 0.8 2.0 1 1 0 1 1 1 1 HD domain RanGAP1_C PF07834.11 gi|159042088|ref|YP_001541340.1| - 0.035 13.7 0.9 0.086 12.4 0.1 1.9 2 0 0 2 2 2 0 RanGAP1 C-terminal domain JAMP PF05571.12 gi|159042088|ref|YP_001541340.1| - 0.091 12.4 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 JNK1/MAPK8-associated membrane protein CTP_transf_like PF01467.26 gi|159042089|ref|YP_001541341.1| - 6.6e-14 52.3 0.0 7.9e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like LSM PF01423.22 gi|159042090|ref|YP_001541342.1| - 3.4e-23 81.1 0.2 3.8e-23 80.9 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|159042090|ref|YP_001541342.1| - 0.00038 20.5 0.0 0.00047 20.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|159042090|ref|YP_001541342.1| - 0.035 13.7 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Hfq protein Diphthami_syn_2 PF01902.17 gi|159042091|ref|YP_001541343.1| - 2.5e-58 197.2 0.0 2.7e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|159042091|ref|YP_001541343.1| - 0.017 14.6 0.0 0.048 13.2 0.0 1.8 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC GTP_EFTU PF00009.27 gi|159042092|ref|YP_001541344.1| - 7.5e-25 87.6 0.1 6.3e-24 84.6 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|159042092|ref|YP_001541344.1| - 2.8e-18 65.9 0.4 5.7e-18 65.0 0.4 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|159042092|ref|YP_001541344.1| - 4.3e-09 36.6 1.4 1.1e-08 35.3 1.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|159042092|ref|YP_001541344.1| - 0.00054 19.9 0.0 0.016 15.1 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|159042092|ref|YP_001541344.1| - 0.0075 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|159042092|ref|YP_001541344.1| - 0.02 14.7 0.1 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|159042092|ref|YP_001541344.1| - 0.023 14.2 0.0 7 6.0 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit NUDIX PF00293.28 gi|159042093|ref|YP_001541345.1| - 9.1e-19 67.8 0.0 1.1e-18 67.6 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain tRNA-synt_1c PF00749.21 gi|159042094|ref|YP_001541346.1| - 8e-66 222.1 0.0 1.1e-65 221.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|159042094|ref|YP_001541346.1| - 5.1e-27 94.9 0.0 9.3e-27 94.0 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain bPH_2 PF03703.14 gi|159042094|ref|YP_001541346.1| - 0.064 13.5 0.0 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial PH domain tRNA-synt_1e PF01406.19 gi|159042094|ref|YP_001541346.1| - 0.1 11.9 0.1 13 5.1 0.0 2.7 2 1 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain TGT_C2 PF14810.6 gi|159042095|ref|YP_001541347.1| - 3.2e-14 52.8 0.0 4.9e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|159042095|ref|YP_001541347.1| - 2.3e-10 40.3 0.5 5e-10 39.2 0.6 1.6 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|159042095|ref|YP_001541347.1| - 0.004 17.4 0.2 0.008 16.4 0.2 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain TruB-C_2 PF09157.11 gi|159042095|ref|YP_001541347.1| - 0.03 14.4 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal PCMT PF01135.19 gi|159042097|ref|YP_001541349.1| - 9.1e-57 192.2 0.0 1.1e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|159042097|ref|YP_001541349.1| - 3.5e-06 26.9 0.0 6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|159042097|ref|YP_001541349.1| - 1.4e-05 24.9 0.0 2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|159042097|ref|YP_001541349.1| - 2.9e-05 24.7 0.0 5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|159042097|ref|YP_001541349.1| - 0.00017 22.2 0.0 0.00037 21.1 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|159042097|ref|YP_001541349.1| - 0.0004 19.6 0.0 0.00051 19.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|159042097|ref|YP_001541349.1| - 0.044 14.8 0.0 0.077 14.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|159042097|ref|YP_001541349.1| - 0.046 13.3 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|159042097|ref|YP_001541349.1| - 0.051 13.4 0.0 0.095 12.5 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_9 PF08003.11 gi|159042097|ref|YP_001541349.1| - 0.1 11.5 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF938 PF06080.12 gi|159042097|ref|YP_001541349.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Glyco_hydro_1 PF00232.18 gi|159042098|ref|YP_001541350.1| - 3.5e-70 236.7 0.1 2e-46 158.4 0.1 2.4 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|159042098|ref|YP_001541350.1| - 8.7e-08 31.9 0.4 1.1e-05 25.1 0.1 2.1 2 0 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_10 PF00331.20 gi|159042098|ref|YP_001541350.1| - 0.059 12.5 0.3 2.4 7.3 0.1 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 10 Spond_N PF06468.13 gi|159042099|ref|YP_001541351.1| - 0.17 12.0 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 Spondin_N RNA_pol_L_2 PF13656.6 gi|159042100|ref|YP_001541352.1| - 4.7e-18 64.7 0.0 5.6e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Urocanase_C PF17392.2 gi|159042102|ref|YP_001541354.1| - 2.2e-82 275.3 0.0 3.7e-82 274.5 0.0 1.4 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|159042102|ref|YP_001541354.1| - 4.5e-79 265.0 0.2 6.3e-79 264.5 0.2 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|159042102|ref|YP_001541354.1| - 5.2e-43 145.8 0.0 9.4e-43 144.9 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain MFS_1 PF07690.16 gi|159042103|ref|YP_001541355.1| - 7.2e-21 74.5 50.3 7.2e-21 74.5 50.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159042103|ref|YP_001541355.1| - 6.1e-18 64.9 14.9 6.1e-18 64.9 14.9 2.8 1 1 0 2 2 2 2 Sugar (and other) transporter DUF2613 PF11021.8 gi|159042103|ref|YP_001541355.1| - 5.4 7.2 6.1 1.4 9.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) Arginase PF00491.21 gi|159042104|ref|YP_001541356.1| - 7.8e-62 209.3 0.0 9.3e-62 209.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family Lyase_aromatic PF00221.19 gi|159042105|ref|YP_001541357.1| - 3.4e-142 474.4 1.6 3.9e-142 474.2 1.6 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_3 PF07969.11 gi|159042106|ref|YP_001541358.1| - 1.9e-18 67.2 0.0 1.2e-13 51.4 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|159042106|ref|YP_001541358.1| - 2e-15 57.0 0.0 4.3e-15 55.9 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family vATP-synt_AC39 PF01992.16 gi|159042106|ref|YP_001541358.1| - 0.0045 16.5 0.0 0.0073 15.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit PNP_UDP_1 PF01048.20 gi|159042107|ref|YP_001541359.1| - 1.6e-32 112.7 0.8 1.7e-32 112.6 0.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Prok-RING_1 PF14446.6 gi|159042108|ref|YP_001541360.1| - 4.5e-05 23.3 5.1 6.1e-05 22.9 5.1 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|159042108|ref|YP_001541360.1| - 0.00013 21.5 0.9 0.00013 21.5 0.9 2.4 2 1 1 3 3 3 1 zinc-ribbon domain DUF1272 PF06906.11 gi|159042108|ref|YP_001541360.1| - 0.0013 18.7 5.7 0.0024 17.9 5.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) C1_2 PF03107.16 gi|159042108|ref|YP_001541360.1| - 0.0018 18.5 4.6 0.0026 18.1 4.6 1.2 1 0 0 1 1 1 1 C1 domain Mu-like_Com PF10122.9 gi|159042108|ref|YP_001541360.1| - 0.002 17.6 3.7 0.002 17.6 3.7 1.8 1 1 1 2 2 2 1 Mu-like prophage protein Com FYVE PF01363.21 gi|159042108|ref|YP_001541360.1| - 0.0042 17.2 4.2 0.0048 17.0 4.2 1.1 1 0 0 1 1 1 1 FYVE zinc finger ADK_lid PF05191.14 gi|159042108|ref|YP_001541360.1| - 0.0044 17.0 3.7 0.056 13.4 2.0 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid IBR PF01485.21 gi|159042108|ref|YP_001541360.1| - 0.0046 17.2 3.9 0.0059 16.8 3.9 1.4 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf_UBZ PF18439.1 gi|159042108|ref|YP_001541360.1| - 0.0072 15.9 4.2 0.2 11.3 1.0 2.4 2 1 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|159042108|ref|YP_001541360.1| - 0.0078 16.2 6.0 0.051 13.6 6.0 2.2 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|159042108|ref|YP_001541360.1| - 0.011 15.7 2.8 0.012 15.7 2.3 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|159042108|ref|YP_001541360.1| - 0.017 14.8 9.3 2 8.2 0.1 3.3 2 1 0 2 2 2 0 Rubredoxin metal binding domain zf-RING_2 PF13639.6 gi|159042108|ref|YP_001541360.1| - 0.07 13.5 4.0 0.099 13.0 4.0 1.3 1 0 0 1 1 1 0 Ring finger domain zinc_ribbon_5 PF13719.6 gi|159042108|ref|YP_001541360.1| - 0.083 12.7 6.6 1.4 8.8 2.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|159042108|ref|YP_001541360.1| - 0.11 12.3 5.2 0.13 12.0 3.0 2.3 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|159042108|ref|YP_001541360.1| - 0.14 11.9 10.0 0.54 10.0 0.2 3.4 2 1 1 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2688 PF10892.8 gi|159042108|ref|YP_001541360.1| - 0.23 10.9 6.1 0.27 10.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zinc_ribbon_4 PF13717.6 gi|159042108|ref|YP_001541360.1| - 0.46 10.4 7.3 3.5 7.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.16 gi|159042108|ref|YP_001541360.1| - 0.62 10.3 8.2 2.1 8.6 7.1 2.2 1 1 2 3 3 3 0 AN1-like Zinc finger zf-B_box PF00643.24 gi|159042108|ref|YP_001541360.1| - 0.83 9.9 5.7 4.3 7.6 5.7 2.1 1 1 0 1 1 1 0 B-box zinc finger zf-ribbon_3 PF13248.6 gi|159042108|ref|YP_001541360.1| - 0.93 9.0 8.7 1.4 8.5 0.5 3.2 3 1 1 4 4 4 0 zinc-ribbon domain zf-CCHC_2 PF13696.6 gi|159042108|ref|YP_001541360.1| - 0.95 9.3 7.8 5.5 6.9 0.7 2.5 2 0 0 2 2 2 0 Zinc knuckle DUF35_N PF12172.8 gi|159042108|ref|YP_001541360.1| - 1.4 8.9 14.0 0.4 10.6 1.1 2.8 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|159042108|ref|YP_001541360.1| - 1.6 8.3 9.4 0.3 10.6 2.6 2.9 2 1 1 3 3 3 0 TFIIB zinc-binding zf-HIT PF04438.16 gi|159042108|ref|YP_001541360.1| - 2.7 7.9 15.8 3.3 7.7 6.6 3.1 1 1 2 3 3 3 0 HIT zinc finger Zn_ribbon_SprT PF17283.2 gi|159042108|ref|YP_001541360.1| - 5.7 6.9 14.9 2.4 8.1 1.1 3.1 1 1 2 3 3 3 0 SprT-like zinc ribbon domain NTP_transf_4 PF13562.6 gi|159042109|ref|YP_001541361.1| - 2.1e-06 28.1 0.1 2.2e-05 24.8 0.1 2.1 1 1 0 1 1 1 1 Sugar nucleotidyl transferase Hexapep PF00132.24 gi|159042109|ref|YP_001541361.1| - 0.29 10.9 3.1 20 5.1 0.0 3.6 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) PaREP1 PF05942.11 gi|159042110|ref|YP_001541362.1| - 1.6e-34 118.3 2.3 1.6e-34 118.3 2.3 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Leuk-A4-hydro_C PF09127.11 gi|159042110|ref|YP_001541362.1| - 0.059 13.4 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 Leukotriene A4 hydrolase, C-terminal FliS PF02561.14 gi|159042110|ref|YP_001541362.1| - 0.12 12.7 4.1 0.22 11.8 1.4 2.5 2 1 1 3 3 3 0 Flagellar protein FliS PAC2 PF09754.9 gi|159042111|ref|YP_001541363.1| - 6e-34 117.9 0.2 8.3e-34 117.5 0.2 1.2 1 0 0 1 1 1 1 PAC2 family Metallophos_2 PF12850.7 gi|159042112|ref|YP_001541364.1| - 8.9e-10 39.0 0.1 1.2e-09 38.6 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|159042112|ref|YP_001541364.1| - 1.5e-05 25.6 0.6 0.00025 21.6 0.0 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase PAC2 PF09754.9 gi|159042112|ref|YP_001541364.1| - 0.018 15.1 0.0 0.07 13.1 0.0 1.6 1 1 0 1 1 1 0 PAC2 family TP6A_N PF04406.14 gi|159042113|ref|YP_001541365.1| - 7.5e-22 77.1 0.0 1.3e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|159042113|ref|YP_001541365.1| - 0.033 14.1 0.0 0.075 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HIT PF01230.23 gi|159042114|ref|YP_001541366.1| - 5e-13 49.6 0.0 7.9e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|159042114|ref|YP_001541366.1| - 7.5e-06 26.4 0.0 2e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|159042114|ref|YP_001541366.1| - 0.00025 20.9 0.2 0.00041 20.2 0.2 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Arif-1 PF06770.11 gi|159042114|ref|YP_001541366.1| - 0.0047 16.6 0.1 0.0083 15.8 0.1 1.3 1 0 0 1 1 1 1 Actin-rearrangement-inducing factor (Arif-1) GalP_UDP_tr_C PF02744.17 gi|159042114|ref|YP_001541366.1| - 0.0065 16.2 0.0 0.0075 16.0 0.0 1.1 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain FIVAR PF07554.13 gi|159042116|ref|YP_001541368.1| - 0.048 14.4 0.0 0.15 12.9 0.0 1.8 1 1 1 2 2 2 0 FIVAR domain HEPN PF05168.14 gi|159042117|ref|YP_001541369.1| - 1.1e-05 25.5 1.5 1.7e-05 24.9 1.5 1.3 1 0 0 1 1 1 1 HEPN domain PmbA_TldD PF01523.16 gi|159042118|ref|YP_001541370.1| - 1e-31 110.8 0.1 1.3e-31 110.5 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase GatB_N PF02934.15 gi|159042119|ref|YP_001541371.1| - 8.4e-61 205.8 0.0 1.1e-60 205.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|159042119|ref|YP_001541371.1| - 4.3e-11 42.9 0.0 3.4e-10 40.0 0.0 2.3 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.18 gi|159042119|ref|YP_001541371.1| - 4.6e-06 26.6 0.4 1.3e-05 25.1 0.4 1.8 1 1 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|159042119|ref|YP_001541371.1| - 9.2e-05 22.5 0.3 0.0021 18.2 0.1 2.4 2 0 0 2 2 2 1 Yqey-like protein ABC_tran PF00005.27 gi|159042120|ref|YP_001541372.1| - 5.7e-28 98.1 0.0 8.1e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159042120|ref|YP_001541372.1| - 3.9e-14 53.2 0.0 7.3e-09 35.8 0.0 2.5 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159042120|ref|YP_001541372.1| - 2e-06 27.4 0.0 5.4e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|159042120|ref|YP_001541372.1| - 0.00029 21.5 0.0 0.00087 20.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|159042120|ref|YP_001541372.1| - 0.00057 20.3 0.0 0.001 19.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|159042120|ref|YP_001541372.1| - 0.00073 19.3 0.0 0.34 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain NB-ARC PF00931.22 gi|159042120|ref|YP_001541372.1| - 0.0011 18.2 0.0 0.016 14.4 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_23 PF13476.6 gi|159042120|ref|YP_001541372.1| - 0.0013 19.3 0.0 0.0022 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|159042120|ref|YP_001541372.1| - 0.0014 19.2 0.2 1.8 9.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|159042120|ref|YP_001541372.1| - 0.0029 17.3 0.0 0.0059 16.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|159042120|ref|YP_001541372.1| - 0.0041 17.1 0.0 0.031 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF1918 PF08940.11 gi|159042120|ref|YP_001541372.1| - 0.0091 15.6 0.9 0.39 10.4 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1918) ATPase_2 PF01637.18 gi|159042120|ref|YP_001541372.1| - 0.0097 15.8 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|159042120|ref|YP_001541372.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|159042120|ref|YP_001541372.1| - 0.011 15.5 0.0 0.014 15.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|159042120|ref|YP_001541372.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.8 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|159042120|ref|YP_001541372.1| - 0.016 15.4 0.1 0.11 12.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|159042120|ref|YP_001541372.1| - 0.029 14.1 0.0 0.072 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|159042120|ref|YP_001541372.1| - 0.041 13.0 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_25 PF13481.6 gi|159042120|ref|YP_001541372.1| - 0.042 13.4 0.0 0.42 10.2 0.0 2.5 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|159042120|ref|YP_001541372.1| - 0.045 13.6 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|159042120|ref|YP_001541372.1| - 0.049 13.9 0.0 0.11 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|159042120|ref|YP_001541372.1| - 0.05 11.1 0.0 0.07 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SbcCD_C PF13558.6 gi|159042120|ref|YP_001541372.1| - 0.052 13.8 0.0 0.22 11.8 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|159042120|ref|YP_001541372.1| - 0.06 13.8 0.0 0.15 12.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|159042120|ref|YP_001541372.1| - 0.072 12.1 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DLIC PF05783.11 gi|159042120|ref|YP_001541372.1| - 0.073 11.9 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_7 PF12775.7 gi|159042120|ref|YP_001541372.1| - 0.078 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MutS_V PF00488.21 gi|159042120|ref|YP_001541372.1| - 0.08 13.0 0.0 7.3 6.6 0.0 2.2 2 0 0 2 2 2 0 MutS domain V TsaE PF02367.17 gi|159042120|ref|YP_001541372.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MobB PF03205.14 gi|159042120|ref|YP_001541372.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|159042120|ref|YP_001541372.1| - 0.15 12.2 0.0 0.27 11.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|159042120|ref|YP_001541372.1| - 0.19 11.3 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|159042121|ref|YP_001541373.1| - 5.7e-11 42.2 24.2 8.3e-11 41.7 24.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|159042121|ref|YP_001541373.1| - 0.0026 16.9 22.4 0.0026 16.9 22.4 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein HTH_5 PF01022.20 gi|159042122|ref|YP_001541374.1| - 6.9e-10 38.6 0.1 1.4e-09 37.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|159042122|ref|YP_001541374.1| - 1.9e-09 37.4 0.0 3.1e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|159042122|ref|YP_001541374.1| - 8.7e-05 22.3 0.0 0.00013 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|159042122|ref|YP_001541374.1| - 0.00079 18.9 0.5 0.0079 15.7 0.0 2.6 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding ArsR PF09824.9 gi|159042122|ref|YP_001541374.1| - 0.015 14.9 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator TrmB PF01978.19 gi|159042122|ref|YP_001541374.1| - 0.024 14.5 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|159042122|ref|YP_001541374.1| - 0.049 14.0 0.0 0.086 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|159042122|ref|YP_001541374.1| - 0.054 13.3 0.1 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain COMP PF11598.8 gi|159042123|ref|YP_001541375.1| - 0.014 15.9 0.2 0.026 15.0 0.2 1.4 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein DUF948 PF06103.11 gi|159042123|ref|YP_001541375.1| - 0.019 15.2 0.6 0.041 14.1 0.6 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF4271 PF14093.6 gi|159042123|ref|YP_001541375.1| - 0.04 13.8 1.4 0.05 13.5 1.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) Sec34 PF04136.15 gi|159042123|ref|YP_001541375.1| - 0.045 13.6 0.3 0.19 11.6 0.2 1.8 1 1 1 2 2 2 0 Sec34-like family GCN5L1 PF06320.13 gi|159042123|ref|YP_001541375.1| - 0.046 13.9 0.1 0.063 13.4 0.1 1.1 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) DegS PF05384.11 gi|159042123|ref|YP_001541375.1| - 0.055 13.0 0.1 0.068 12.7 0.1 1.1 1 0 0 1 1 1 0 Sensor protein DegS DUF3093 PF11292.8 gi|159042123|ref|YP_001541375.1| - 0.064 13.5 0.2 0.084 13.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) PhoLip_ATPase_C PF16212.5 gi|159042123|ref|YP_001541375.1| - 0.13 12.0 2.1 0.16 11.7 2.1 1.1 1 0 0 1 1 1 0 Phospholipid-translocating P-type ATPase C-terminal Dynein_C PF18199.1 gi|159042123|ref|YP_001541375.1| - 0.15 11.3 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain C-terminal domain DUF2852 PF11014.8 gi|159042123|ref|YP_001541375.1| - 1.7 8.8 4.4 0.43 10.7 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2852) Med30 PF11315.8 gi|159042124|ref|YP_001541376.1| - 0.032 14.5 0.7 0.034 14.3 0.7 1.0 1 0 0 1 1 1 0 Mediator complex subunit 30 Pentapeptide_4 PF13599.6 gi|159042125|ref|YP_001541377.1| - 0.17 12.0 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) HEPN PF05168.14 gi|159042126|ref|YP_001541378.1| - 5.5e-28 97.5 0.3 6.3e-28 97.3 0.3 1.0 1 0 0 1 1 1 1 HEPN domain NICE-3 PF07406.11 gi|159042126|ref|YP_001541378.1| - 0.1 12.5 0.4 0.2 11.6 0.1 1.8 2 1 0 2 2 2 0 NICE-3 protein NTP_transf_2 PF01909.23 gi|159042127|ref|YP_001541379.1| - 2.8e-11 43.6 0.2 4e-11 43.1 0.2 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|159042127|ref|YP_001541379.1| - 1.2e-06 28.5 0.0 1.4e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|159042127|ref|YP_001541379.1| - 0.055 13.7 0.0 0.072 13.3 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm Adenyl_cycl_N PF12633.7 gi|159042127|ref|YP_001541379.1| - 0.13 12.2 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain Pribosyltran PF00156.27 gi|159042128|ref|YP_001541380.1| - 5.4e-13 48.7 0.2 8e-13 48.2 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|159042128|ref|YP_001541380.1| - 0.15 11.6 0.1 0.25 10.8 0.1 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase Polyketide_cyc PF03364.20 gi|159042129|ref|YP_001541381.1| - 2e-05 24.8 0.0 2.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|159042129|ref|YP_001541381.1| - 0.00041 20.6 0.0 0.00071 19.9 0.0 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Metallophos_2 PF12850.7 gi|159042130|ref|YP_001541382.1| - 2.6e-09 37.5 0.1 1.6e-08 34.9 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|159042130|ref|YP_001541382.1| - 8.9e-08 32.9 0.6 3.1e-05 24.6 0.0 2.3 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase BacA PF02673.18 gi|159042131|ref|YP_001541383.1| - 1.5e-45 155.9 21.9 1.8e-45 155.7 21.9 1.1 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Ribosomal_S9 PF00380.19 gi|159042132|ref|YP_001541384.1| - 8e-33 113.5 0.2 9.5e-33 113.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|159042133|ref|YP_001541385.1| - 1.2e-26 92.8 0.1 1.3e-26 92.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|159042133|ref|YP_001541385.1| - 0.0035 17.6 0.0 0.0059 16.8 0.0 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) HscB_4_cys PF18256.1 gi|159042133|ref|YP_001541385.1| - 0.0064 16.3 1.2 0.013 15.3 1.2 1.5 1 0 0 1 1 1 1 Co-chaperone HscB tetracysteine metal binding motif DUF4307 PF14155.6 gi|159042135|ref|YP_001541387.1| - 0.13 12.1 5.7 2.5 8.0 5.7 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4307) DUF2897 PF11446.8 gi|159042135|ref|YP_001541387.1| - 2.3 8.2 7.5 3.9 7.4 7.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) Pilin_N PF07790.11 gi|159042135|ref|YP_001541387.1| - 2.8 8.9 7.3 5.4 8.0 7.3 1.5 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal TruD PF01142.18 gi|159042137|ref|YP_001541389.1| - 7.1e-131 436.8 0.0 8e-131 436.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PNP_UDP_1 PF01048.20 gi|159042138|ref|YP_001541390.1| - 6.6e-42 143.4 0.0 7.6e-42 143.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Aldo_ket_red PF00248.21 gi|159042139|ref|YP_001541391.1| - 5.3e-60 203.1 0.0 2.2e-59 201.1 0.0 1.7 1 1 0 1 1 1 1 Aldo/keto reductase family Fumerase PF05681.14 gi|159042140|ref|YP_001541392.1| - 2.8e-80 269.6 0.0 3.3e-80 269.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Archease PF01951.16 gi|159042141|ref|YP_001541393.1| - 3.7e-41 140.6 0.0 4.1e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DrsE PF02635.15 gi|159042142|ref|YP_001541394.1| - 2e-05 24.9 0.1 3e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 DsrE/DsrF-like family Arginase PF00491.21 gi|159042145|ref|YP_001541397.1| - 1.2e-55 189.0 0.0 1.4e-55 188.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF131 PF01998.17 gi|159042147|ref|YP_001541399.1| - 6.3e-20 70.6 5.3 6.3e-20 70.6 5.3 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF5305 PF17231.2 gi|159042147|ref|YP_001541399.1| - 0.015 14.7 0.1 0.015 14.7 0.1 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5305) SK_channel PF03530.14 gi|159042147|ref|YP_001541399.1| - 0.016 15.2 2.2 0.029 14.3 2.2 1.5 1 1 0 1 1 1 0 Calcium-activated SK potassium channel DUF1673 PF07895.11 gi|159042147|ref|YP_001541399.1| - 0.051 13.3 3.9 0.053 13.2 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF4330 PF14221.6 gi|159042147|ref|YP_001541399.1| - 0.051 13.8 0.4 0.051 13.8 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) EphA2_TM PF14575.6 gi|159042147|ref|YP_001541399.1| - 0.16 12.9 0.0 0.16 12.9 0.0 2.1 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain Saf_2TM PF18303.1 gi|159042147|ref|YP_001541399.1| - 0.19 11.3 6.4 0.54 9.8 0.1 2.0 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain ASFV_J13L PF05568.11 gi|159042147|ref|YP_001541399.1| - 0.29 10.9 7.0 1 9.1 1.7 2.0 1 1 1 2 2 2 0 African swine fever virus J13L protein Sigma_reg_N PF13800.6 gi|159042147|ref|YP_001541399.1| - 0.56 10.5 10.2 8 6.8 0.1 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal UL42 PF17638.2 gi|159042147|ref|YP_001541399.1| - 0.68 9.9 6.9 2.6 8.0 0.3 2.1 2 0 0 2 2 2 0 HCMV UL42 Baculo_11_kDa PF06143.11 gi|159042147|ref|YP_001541399.1| - 0.68 9.5 7.4 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF2207 PF09972.9 gi|159042147|ref|YP_001541399.1| - 1.4 7.6 4.1 1.8 7.2 4.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HemY_N PF07219.13 gi|159042147|ref|YP_001541399.1| - 3.3 8.0 4.5 27 5.0 0.0 2.1 2 0 0 2 2 2 0 HemY protein N-terminus MRAP PF15183.6 gi|159042147|ref|YP_001541399.1| - 3.7 7.6 5.2 31 4.6 0.0 2.1 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family Tad PF13400.6 gi|159042147|ref|YP_001541399.1| - 4.7 7.6 10.7 1.5 9.2 0.3 2.3 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF3671 PF12420.8 gi|159042148|ref|YP_001541400.1| - 0.16 12.0 9.9 0.23 11.5 9.9 1.3 1 0 0 1 1 1 0 Protein of unknown function Baculo_11_kDa PF06143.11 gi|159042148|ref|YP_001541400.1| - 3.8 7.1 8.9 3 7.5 1.3 2.2 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF4231 PF14015.6 gi|159042148|ref|YP_001541400.1| - 5.9 7.4 10.4 27 5.3 10.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Pox_P21 PF05313.12 gi|159042148|ref|YP_001541400.1| - 6.3 6.3 12.3 8.1 6.0 12.3 1.2 1 0 0 1 1 1 0 Poxvirus P21 membrane protein FlaG PF03646.15 gi|159042149|ref|YP_001541401.1| - 0.008 16.3 0.1 0.013 15.7 0.1 1.2 1 0 0 1 1 1 1 FlaG protein DUF5304 PF17230.2 gi|159042149|ref|YP_001541401.1| - 0.062 13.5 0.1 0.097 12.9 0.1 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5304) DUF3086 PF11285.8 gi|159042149|ref|YP_001541401.1| - 0.069 12.2 0.2 0.091 11.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) DUF4422 PF14393.6 gi|159042149|ref|YP_001541401.1| - 0.09 12.6 0.3 0.11 12.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4422) Pro-kuma_activ PF09286.11 gi|159042150|ref|YP_001541402.1| - 3.3e-23 82.6 0.0 6.9e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Big_7 PF17957.1 gi|159042150|ref|YP_001541402.1| - 6.5e-07 30.0 0.8 6.3e-06 26.9 0.8 2.9 1 0 0 1 1 1 1 Bacterial Ig domain Peptidase_S8 PF00082.22 gi|159042150|ref|YP_001541402.1| - 0.0021 17.4 0.4 0.0038 16.5 0.4 1.4 1 0 0 1 1 1 1 Subtilase family BetaGal_dom4_5 PF13364.6 gi|159042150|ref|YP_001541402.1| - 0.014 16.0 0.2 1.1 9.8 0.3 2.9 2 0 0 2 2 2 0 Beta-galactosidase jelly roll domain MG2 PF01835.19 gi|159042150|ref|YP_001541402.1| - 0.11 12.9 0.0 3 8.4 0.0 2.9 3 0 0 3 3 3 0 MG2 domain Memo PF01875.17 gi|159042151|ref|YP_001541403.1| - 4.8e-75 252.2 0.1 5.4e-75 252.0 0.1 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|159042151|ref|YP_001541403.1| - 0.0014 17.8 0.0 0.003 16.7 0.0 1.5 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PsiE PF06146.12 gi|159042152|ref|YP_001541404.1| - 4.4e-11 43.0 11.9 4.4e-11 43.0 11.9 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Ytca PF17090.5 gi|159042152|ref|YP_001541404.1| - 3 8.4 11.5 0.1 13.2 2.5 2.5 2 1 0 3 3 3 0 Uncharacterised protein family PAP2_C PF14360.6 gi|159042152|ref|YP_001541404.1| - 4.1 8.0 12.0 5.8 7.5 9.6 2.5 1 1 1 2 2 2 0 PAP2 superfamily C-terminal Thiamine_BP PF01910.17 gi|159042153|ref|YP_001541405.1| - 2.8e-25 88.0 0.5 3.1e-25 87.9 0.5 1.0 1 0 0 1 1 1 1 Thiamine-binding protein PALP PF00291.25 gi|159042154|ref|YP_001541406.1| - 5.5e-45 154.0 0.0 1.3e-44 152.8 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Presenilin PF01080.17 gi|159042155|ref|YP_001541407.1| - 1.7e-05 23.8 36.1 0.0039 16.0 10.1 2.0 1 1 0 2 2 2 2 Presenilin C5-epim_C PF06662.13 gi|159042156|ref|YP_001541408.1| - 0.0056 16.2 0.1 0.012 15.2 0.1 1.5 1 0 0 1 1 1 1 D-glucuronyl C5-epimerase C-terminus DHHA1 PF02272.19 gi|159042157|ref|YP_001541409.1| - 0.00088 19.7 0.3 0.0077 16.6 0.0 2.6 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|159042157|ref|YP_001541409.1| - 0.033 14.4 0.0 0.099 12.9 0.0 1.8 1 1 0 1 1 1 0 DHH family DUF2250 PF10007.9 gi|159042158|ref|YP_001541410.1| - 1.6e-34 117.8 0.6 1.8e-34 117.7 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|159042158|ref|YP_001541410.1| - 1.1e-05 25.3 0.2 2e-05 24.4 0.2 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|159042158|ref|YP_001541410.1| - 0.0018 18.0 0.0 0.0021 17.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|159042158|ref|YP_001541410.1| - 0.0021 18.3 0.1 0.0029 17.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator DprA_WH PF17782.1 gi|159042158|ref|YP_001541410.1| - 0.0023 18.0 0.1 0.0033 17.5 0.1 1.4 1 1 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|159042158|ref|YP_001541410.1| - 0.009 15.9 0.0 0.045 13.6 0.0 2.0 1 1 0 1 1 1 1 MarR family BLACT_WH PF17778.1 gi|159042158|ref|YP_001541410.1| - 0.11 12.4 0.2 0.11 12.4 0.2 1.9 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain T2SSF PF00482.23 gi|159042158|ref|YP_001541410.1| - 0.12 12.4 0.0 0.47 10.4 0.0 1.8 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F Laminin_II PF06009.12 gi|159042159|ref|YP_001541411.1| - 0.094 12.7 0.1 9.6 6.2 0.1 2.1 2 0 0 2 2 2 0 Laminin Domain II FlaC_arch PF05377.11 gi|159042159|ref|YP_001541411.1| - 0.1 13.0 1.5 11 6.5 0.1 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF86 PF01934.17 gi|159042160|ref|YP_001541412.1| - 0.0092 15.8 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|159042161|ref|YP_001541413.1| - 4.5e-10 39.5 0.0 7.3e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|159042161|ref|YP_001541413.1| - 0.038 14.3 1.3 0.4 11.0 1.3 2.1 1 1 0 1 1 1 0 Nucleotidyltransferase domain Ribosomal_L37ae PF01780.19 gi|159042162|ref|YP_001541414.1| - 1.8e-28 98.4 0.1 2.5e-28 98.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|159042162|ref|YP_001541414.1| - 0.0011 18.8 1.5 0.0018 18.2 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|159042162|ref|YP_001541414.1| - 0.0013 18.5 0.1 0.57 10.1 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO IBR PF01485.21 gi|159042162|ref|YP_001541414.1| - 0.0039 17.4 0.1 0.0061 16.8 0.1 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf-H2C2_2 PF13465.6 gi|159042162|ref|YP_001541414.1| - 0.0075 16.6 1.0 0.65 10.5 0.2 2.4 2 0 0 2 2 2 1 Zinc-finger double domain Zn_ribbon_SprT PF17283.2 gi|159042162|ref|YP_001541414.1| - 0.0096 15.8 3.2 1.4 8.9 0.6 2.3 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zf-tcix PF14952.6 gi|159042162|ref|YP_001541414.1| - 0.0099 15.5 4.1 0.36 10.5 0.1 2.3 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.6 gi|159042162|ref|YP_001541414.1| - 0.013 15.2 3.2 1.1 9.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.22 gi|159042162|ref|YP_001541414.1| - 0.019 14.8 1.4 0.031 14.2 1.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|159042162|ref|YP_001541414.1| - 0.024 14.6 0.3 0.047 13.7 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|159042162|ref|YP_001541414.1| - 0.034 14.1 0.3 0.059 13.3 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|159042162|ref|YP_001541414.1| - 0.052 13.6 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|159042162|ref|YP_001541414.1| - 0.063 13.5 1.7 0.96 9.7 0.2 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|159042162|ref|YP_001541414.1| - 0.07 13.3 1.2 4.3 7.5 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|159042162|ref|YP_001541414.1| - 0.078 12.8 5.5 0.29 11.0 0.1 2.5 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|159042162|ref|YP_001541414.1| - 0.15 11.5 2.5 8.9 5.9 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|159042162|ref|YP_001541414.1| - 0.17 11.9 1.3 17 5.6 0.3 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF4379 PF14311.6 gi|159042162|ref|YP_001541414.1| - 0.24 11.8 4.0 10 6.6 0.1 3.1 3 0 0 3 3 3 0 Probable Zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|159042162|ref|YP_001541414.1| - 0.26 11.2 4.1 3.9 7.5 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|159042162|ref|YP_001541414.1| - 0.29 10.9 6.1 1.4 8.7 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|159042162|ref|YP_001541414.1| - 0.35 11.0 6.6 6.2 7.0 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_10 PF10058.9 gi|159042162|ref|YP_001541414.1| - 0.67 9.7 2.6 7.1 6.5 2.7 2.0 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-TFIIB PF13453.6 gi|159042162|ref|YP_001541414.1| - 0.79 9.1 5.3 5.4 6.4 5.1 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf_C2H2_10 PF18414.1 gi|159042162|ref|YP_001541414.1| - 2.5 7.7 5.6 5.3 6.7 0.3 2.5 3 0 0 3 3 3 0 C2H2 type zinc-finger Aldo_ket_red PF00248.21 gi|159042163|ref|YP_001541415.1| - 3.4e-61 207.0 0.0 1.5e-59 201.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Cupin_2 PF07883.11 gi|159042164|ref|YP_001541416.1| - 3e-20 71.7 0.0 4e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|159042164|ref|YP_001541416.1| - 4.6e-09 36.0 0.0 5.4e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|159042164|ref|YP_001541416.1| - 5.1e-09 36.2 0.0 6.2e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|159042164|ref|YP_001541416.1| - 4.3e-08 33.0 0.0 1.3e-07 31.4 0.0 1.7 1 1 0 1 1 1 1 Auxin binding protein AraC_binding PF02311.19 gi|159042164|ref|YP_001541416.1| - 8.3e-06 25.7 0.0 0.00015 21.7 0.0 2.0 1 1 1 2 2 2 1 AraC-like ligand binding domain DMSP_lyase PF16867.5 gi|159042164|ref|YP_001541416.1| - 0.00016 21.3 0.0 0.00022 20.9 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|159042164|ref|YP_001541416.1| - 0.00025 20.7 0.0 0.00063 19.4 0.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|159042164|ref|YP_001541416.1| - 0.0049 16.6 0.0 0.0065 16.2 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_6 PF12852.7 gi|159042164|ref|YP_001541416.1| - 0.021 14.6 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Cupin Cupin_7 PF12973.7 gi|159042164|ref|YP_001541416.1| - 0.027 14.4 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain CENP-C_C PF11699.8 gi|159042164|ref|YP_001541416.1| - 0.032 14.4 0.0 0.051 13.8 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like Ectoine_synth PF06339.12 gi|159042164|ref|YP_001541416.1| - 0.033 14.4 0.0 0.034 14.3 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase AraC_N PF06719.13 gi|159042164|ref|YP_001541416.1| - 0.078 12.6 0.0 0.12 12.0 0.0 1.3 1 1 0 1 1 1 0 AraC-type transcriptional regulator N-terminus EutQ PF06249.12 gi|159042164|ref|YP_001541416.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Pyr_redox_2 PF07992.14 gi|159042165|ref|YP_001541417.1| - 4.1e-50 170.7 0.9 7.2e-50 169.9 0.9 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159042165|ref|YP_001541417.1| - 9e-21 74.2 7.5 8e-17 61.6 0.5 4.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|159042165|ref|YP_001541417.1| - 1e-16 61.1 0.0 2.6e-16 59.9 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|159042165|ref|YP_001541417.1| - 1.2e-16 60.9 0.6 9.3e-13 48.1 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|159042165|ref|YP_001541417.1| - 3.4e-08 33.6 0.6 7.6e-05 22.9 0.0 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|159042165|ref|YP_001541417.1| - 9.6e-08 31.1 4.8 0.0014 17.5 0.1 3.8 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|159042165|ref|YP_001541417.1| - 2.5e-07 30.6 7.9 0.012 15.2 0.1 4.1 3 1 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|159042165|ref|YP_001541417.1| - 4.7e-06 26.0 3.3 0.0012 18.0 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_9 PF13454.6 gi|159042165|ref|YP_001541417.1| - 8.3e-06 25.9 4.0 0.42 10.6 0.0 3.8 4 0 0 4 4 4 2 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|159042165|ref|YP_001541417.1| - 3.4e-05 23.1 0.4 0.00062 19.0 0.0 2.4 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|159042165|ref|YP_001541417.1| - 0.00011 21.6 1.0 0.0008 18.7 0.0 2.4 2 0 0 2 2 2 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|159042165|ref|YP_001541417.1| - 0.00026 20.6 0.1 0.013 15.1 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.24 gi|159042165|ref|YP_001541417.1| - 0.00033 20.1 0.1 0.23 10.7 0.1 3.0 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|159042165|ref|YP_001541417.1| - 0.0025 16.9 0.5 0.015 14.4 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|159042165|ref|YP_001541417.1| - 0.0031 16.9 0.3 0.029 13.7 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.15 gi|159042165|ref|YP_001541417.1| - 0.007 16.2 0.1 0.013 15.3 0.1 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein GIDA PF01134.22 gi|159042165|ref|YP_001541417.1| - 0.0072 15.5 5.4 0.038 13.1 0.1 3.6 3 1 1 4 4 4 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|159042165|ref|YP_001541417.1| - 0.0087 15.0 0.1 0.022 13.6 0.1 1.7 1 0 0 1 1 1 1 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|159042165|ref|YP_001541417.1| - 0.014 14.7 3.2 0.47 9.6 0.2 2.3 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.18 gi|159042165|ref|YP_001541417.1| - 0.014 15.6 0.8 5.8 7.2 0.1 2.7 3 0 0 3 3 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|159042165|ref|YP_001541417.1| - 0.019 15.4 0.6 3.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|159042165|ref|YP_001541417.1| - 0.022 15.3 0.7 0.58 10.8 0.1 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Rib_5-P_isom_A PF06026.14 gi|159042165|ref|YP_001541417.1| - 0.025 14.2 0.0 0.059 13.0 0.0 1.6 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 3HCDH_N PF02737.18 gi|159042165|ref|YP_001541417.1| - 0.039 13.8 0.8 0.17 11.7 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|159042165|ref|YP_001541417.1| - 0.05 12.9 2.2 0.12 11.7 0.3 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|159042165|ref|YP_001541417.1| - 0.24 10.7 1.8 1.8 7.8 0.2 2.3 2 1 0 2 2 2 0 FAD dependent oxidoreductase Peptidase_M24 PF00557.24 gi|159042166|ref|YP_001541418.1| - 6e-55 186.2 0.0 7.6e-55 185.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|159042166|ref|YP_001541418.1| - 2.6e-12 47.6 0.0 1.6e-11 45.0 0.0 2.0 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain HTH_10 PF04967.12 gi|159042167|ref|YP_001541419.1| - 9.7e-20 70.1 0.0 2.2e-19 69.0 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|159042167|ref|YP_001541419.1| - 0.00015 21.2 0.0 0.00095 18.6 0.0 2.1 1 1 1 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|159042167|ref|YP_001541419.1| - 0.00027 20.4 0.0 0.00075 19.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|159042167|ref|YP_001541419.1| - 0.0062 17.0 0.0 0.12 12.8 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|159042167|ref|YP_001541419.1| - 0.0078 15.9 0.0 0.052 13.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|159042167|ref|YP_001541419.1| - 0.0078 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_22 PF13309.6 gi|159042167|ref|YP_001541419.1| - 0.041 13.9 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH domain Taeniidae_ag PF05596.11 gi|159042167|ref|YP_001541419.1| - 0.044 13.8 0.2 8.9 6.4 0.0 3.1 3 0 0 3 3 3 0 Taeniidae antigen HTH_38 PF13936.6 gi|159042167|ref|YP_001541419.1| - 0.11 12.3 0.0 0.57 10.0 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|159042167|ref|YP_001541419.1| - 0.14 12.0 0.0 0.34 10.7 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 gi|159042167|ref|YP_001541419.1| - 0.14 12.2 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain VitK2_biosynth PF02621.14 gi|159042169|ref|YP_001541421.1| - 3.3e-81 272.7 0.0 3.7e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis MFS_1 PF07690.16 gi|159042170|ref|YP_001541422.1| - 7.7e-22 77.7 72.2 8.7e-20 70.9 44.0 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|159042170|ref|YP_001541422.1| - 8e-06 24.9 9.9 0.0012 17.8 1.1 2.1 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|159042170|ref|YP_001541422.1| - 0.00071 18.5 11.6 0.15 10.9 0.3 2.9 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|159042170|ref|YP_001541422.1| - 0.0014 17.6 11.1 0.0014 17.6 11.1 2.4 1 1 1 2 2 2 1 Sugar (and other) transporter DUF2834 PF11196.8 gi|159042170|ref|YP_001541422.1| - 1.9 8.9 11.1 0.082 13.3 1.3 3.3 2 2 1 3 3 3 0 Protein of unknown function (DUF2834) DUF87 PF01935.17 gi|159042171|ref|YP_001541423.1| - 4.6e-30 105.4 0.0 7.6e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|159042171|ref|YP_001541423.1| - 6.3e-09 34.9 0.2 0.0014 17.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|159042171|ref|YP_001541423.1| - 9.9e-07 28.0 0.1 4.6e-05 22.5 0.0 2.5 3 0 0 3 3 3 1 AAA-like domain TrwB_AAD_bind PF10412.9 gi|159042171|ref|YP_001541423.1| - 1.5e-06 27.4 0.1 3.8e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|159042171|ref|YP_001541423.1| - 1.4e-05 24.6 0.2 0.29 10.4 0.0 3.5 2 2 2 4 4 4 3 FtsK/SpoIIIE family HAS-barrel PF09378.10 gi|159042171|ref|YP_001541423.1| - 4.8e-05 23.4 0.7 0.00028 21.0 0.4 2.4 2 0 0 2 2 2 1 HAS barrel domain ResIII PF04851.15 gi|159042171|ref|YP_001541423.1| - 0.0014 18.7 0.0 0.01 15.9 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.12 gi|159042171|ref|YP_001541423.1| - 0.011 15.4 0.0 0.061 13.0 0.0 2.1 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) AAA PF00004.29 gi|159042171|ref|YP_001541423.1| - 0.014 15.8 0.0 0.94 9.9 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|159042171|ref|YP_001541423.1| - 0.029 14.7 0.0 2.4 8.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain T4SS-DNA_transf PF02534.14 gi|159042171|ref|YP_001541423.1| - 0.081 11.7 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer SWIM PF04434.17 gi|159042171|ref|YP_001541423.1| - 0.14 11.9 0.1 0.29 10.9 0.1 1.5 1 0 0 1 1 1 0 SWIM zinc finger NurA PF09376.10 gi|159042172|ref|YP_001541424.1| - 5.9e-12 45.8 0.7 8.7e-12 45.2 0.7 1.3 1 0 0 1 1 1 1 NurA domain UPF0047 PF01894.17 gi|159042173|ref|YP_001541425.1| - 1.2e-33 115.7 0.0 1.4e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF92 PF01940.16 gi|159042174|ref|YP_001541426.1| - 4.6e-54 183.3 9.0 5.6e-54 183.1 9.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 Lenti_VIF_2 PF07401.12 gi|159042174|ref|YP_001541426.1| - 0.13 11.6 0.2 0.21 10.9 0.2 1.4 1 1 0 1 1 1 0 Bovine Lentivirus VIF protein DUF1539 PF07560.11 gi|159042174|ref|YP_001541426.1| - 0.2 11.7 0.0 0.4 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1539) DUF2250 PF10007.9 gi|159042175|ref|YP_001541427.1| - 0.021 14.9 0.0 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Caps_synth PF05704.12 gi|159042175|ref|YP_001541427.1| - 0.095 12.1 0.0 0.098 12.0 0.0 1.0 1 0 0 1 1 1 0 Capsular polysaccharide synthesis protein ADH_N PF08240.12 gi|159042176|ref|YP_001541428.1| - 3.4e-24 84.8 0.0 8.6e-24 83.5 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159042176|ref|YP_001541428.1| - 9.4e-24 83.9 0.5 1.4e-23 83.3 0.5 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|159042176|ref|YP_001541428.1| - 8.6e-14 52.7 0.0 1.7e-13 51.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|159042176|ref|YP_001541428.1| - 8.8e-07 28.8 0.0 2.4e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase adh_short PF00106.25 gi|159042176|ref|YP_001541428.1| - 0.00039 19.9 0.9 0.00072 19.1 0.9 1.5 1 0 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|159042176|ref|YP_001541428.1| - 0.00056 19.3 2.9 0.00091 18.6 2.9 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|159042176|ref|YP_001541428.1| - 0.0066 16.4 3.6 0.0075 16.2 2.7 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|159042176|ref|YP_001541428.1| - 0.0075 15.8 0.3 0.011 15.2 0.3 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Oxidored_nitro PF00148.19 gi|159042176|ref|YP_001541428.1| - 0.01 14.6 0.0 0.013 14.2 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ELFV_dehydrog PF00208.21 gi|159042176|ref|YP_001541428.1| - 0.057 13.1 0.1 0.13 12.0 0.2 1.5 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THF_DHG_CYH_C PF02882.19 gi|159042176|ref|YP_001541428.1| - 0.062 12.6 0.2 0.1 11.9 0.2 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E1-N PF14463.6 gi|159042176|ref|YP_001541428.1| - 0.13 12.1 0.4 0.26 11.1 0.1 1.7 2 0 0 2 2 2 0 E1 N-terminal domain 2-Hacid_dh_C PF02826.19 gi|159042176|ref|YP_001541428.1| - 0.13 11.6 0.7 0.21 10.9 0.7 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fumerase_C PF05683.12 gi|159042177|ref|YP_001541429.1| - 4.2e-50 169.9 0.0 5e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DrsE PF02635.15 gi|159042178|ref|YP_001541430.1| - 3.6e-08 33.8 0.0 5e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|159042178|ref|YP_001541430.1| - 0.00043 20.2 0.3 0.019 14.8 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DUF2713 PF10897.8 gi|159042178|ref|YP_001541430.1| - 0.00073 19.3 0.0 0.00076 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2713) Sugar_tr PF00083.24 gi|159042179|ref|YP_001541431.1| - 1.3e-43 149.5 26.7 3.5e-43 148.1 26.7 1.6 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159042179|ref|YP_001541431.1| - 2.3e-29 102.4 36.0 2.3e-29 102.4 36.0 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|159042179|ref|YP_001541431.1| - 0.0001 21.7 9.3 0.0001 21.7 9.3 2.1 2 0 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB DUF1129 PF06570.11 gi|159042179|ref|YP_001541431.1| - 0.0071 15.9 0.8 0.0071 15.9 0.8 3.9 3 1 0 4 4 4 2 Protein of unknown function (DUF1129) MFS_1_like PF12832.7 gi|159042179|ref|YP_001541431.1| - 0.018 13.9 17.7 0.2 10.5 0.1 2.9 1 1 3 4 4 4 0 MFS_1 like family Sugar_tr PF00083.24 gi|159042180|ref|YP_001541432.1| - 1.1e-38 133.2 34.2 1.4e-38 133.0 34.2 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159042180|ref|YP_001541432.1| - 1.2e-30 106.6 54.9 1.5e-30 106.3 47.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2139 PF09910.9 gi|159042181|ref|YP_001541433.1| - 6.7e-32 111.0 0.1 1.2e-31 110.1 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) Glyco_hydro_12 PF01670.16 gi|159042182|ref|YP_001541434.1| - 1.2e-17 64.6 0.1 1.7e-17 64.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 UxaC PF02614.14 gi|159042183|ref|YP_001541435.1| - 0.0049 15.8 0.0 0.037 12.9 0.0 2.2 2 1 0 2 2 2 1 Glucuronate isomerase Amidohydro_2 PF04909.14 gi|159042183|ref|YP_001541435.1| - 0.054 13.3 0.0 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Amidohydrolase A_deaminase PF00962.22 gi|159042184|ref|YP_001541436.1| - 5e-61 206.8 0.0 5.7e-61 206.6 0.0 1.0 1 0 0 1 1 1 1 Adenosine/AMP deaminase TFX_C PF14601.6 gi|159042184|ref|YP_001541436.1| - 0.13 12.3 0.0 0.79 9.7 0.0 2.2 2 0 0 2 2 2 0 DNA_binding protein, TFX, C-term IMPDH PF00478.25 gi|159042185|ref|YP_001541437.1| - 4.3e-101 338.4 0.7 5e-101 338.2 0.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|159042185|ref|YP_001541437.1| - 5.7e-10 39.5 0.3 0.00029 21.2 0.0 3.5 4 0 0 4 4 4 2 CBS domain NMO PF03060.15 gi|159042185|ref|YP_001541437.1| - 1.6e-09 37.6 4.5 0.00061 19.3 2.4 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|159042185|ref|YP_001541437.1| - 5.3e-08 32.3 2.8 1.1e-07 31.3 2.8 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|159042185|ref|YP_001541437.1| - 0.002 17.3 3.1 0.0034 16.6 3.1 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|159042185|ref|YP_001541437.1| - 0.01 15.2 0.7 0.025 13.9 0.3 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|159042185|ref|YP_001541437.1| - 0.035 13.6 1.5 0.12 11.9 0.2 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein Thy1 PF02511.15 gi|159042186|ref|YP_001541438.1| - 2.5e-35 122.0 0.0 3.2e-35 121.6 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Glyco_hydro_15 PF00723.21 gi|159042187|ref|YP_001541439.1| - 2.6e-08 33.1 2.1 1e-06 27.9 0.1 2.5 1 1 2 3 3 3 2 Glycosyl hydrolases family 15 Rtt106_N PF18215.1 gi|159042187|ref|YP_001541439.1| - 0.07 12.9 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Histone chaperone Rtt106 N-terminal domain CBP_BcsF PF11120.8 gi|159042187|ref|YP_001541439.1| - 0.42 10.8 1.9 0.77 9.9 1.9 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF Glyco_hydro_31 PF01055.26 gi|159042189|ref|YP_001541441.1| - 2.6e-117 392.7 0.3 3.1e-117 392.5 0.3 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|159042189|ref|YP_001541441.1| - 2.2e-20 72.7 0.0 5.4e-20 71.5 0.0 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like GTP-bdg_M PF16360.5 gi|159042189|ref|YP_001541441.1| - 0.06 13.9 0.1 0.12 12.9 0.1 1.5 1 0 0 1 1 1 0 GTP-binding GTPase Middle Region GHL15 PF14885.6 gi|159042189|ref|YP_001541441.1| - 0.088 12.7 0.2 0.15 11.9 0.2 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 ssDBP_DBD PF18361.1 gi|159042190|ref|YP_001541442.1| - 3.6e-45 153.5 1.3 4.9e-45 153.0 1.3 1.2 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain HALZ PF02183.18 gi|159042190|ref|YP_001541442.1| - 0.0002 21.5 5.2 0.00045 20.4 5.2 1.6 1 0 0 1 1 1 1 Homeobox associated leucine zipper ADIP PF11559.8 gi|159042190|ref|YP_001541442.1| - 0.00022 21.4 1.2 0.00043 20.4 1.2 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding PI3K_P85_iSH2 PF16454.5 gi|159042190|ref|YP_001541442.1| - 0.00036 20.2 1.7 0.00063 19.4 1.7 1.3 1 0 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TLE_N PF03920.15 gi|159042190|ref|YP_001541442.1| - 0.00069 19.7 0.6 0.0013 18.8 0.2 1.6 2 0 0 2 2 2 1 Groucho/TLE N-terminal Q-rich domain ZapB PF06005.12 gi|159042190|ref|YP_001541442.1| - 0.00074 19.9 4.2 0.00074 19.9 4.2 1.9 2 0 0 2 2 2 1 Cell division protein ZapB APG6_N PF17675.1 gi|159042190|ref|YP_001541442.1| - 0.0016 19.0 1.8 0.0016 19.0 1.8 1.6 2 0 0 2 2 1 1 Apg6 coiled-coil region Cnn_1N PF07989.11 gi|159042190|ref|YP_001541442.1| - 0.0023 18.0 3.8 0.0061 16.7 3.8 1.7 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 CENP-F_leu_zip PF10473.9 gi|159042190|ref|YP_001541442.1| - 0.0054 16.8 1.9 0.0054 16.8 1.9 1.6 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-H PF05837.12 gi|159042190|ref|YP_001541442.1| - 0.0077 16.6 1.0 0.0077 16.6 1.0 1.6 2 0 0 2 2 1 1 Centromere protein H (CENP-H) KASH_CCD PF14662.6 gi|159042190|ref|YP_001541442.1| - 0.0095 15.8 3.0 0.0095 15.8 3.0 1.6 2 0 0 2 2 2 1 Coiled-coil region of CCDC155 or KASH DUF3450 PF11932.8 gi|159042190|ref|YP_001541442.1| - 0.0096 15.2 0.5 0.015 14.6 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) EzrA PF06160.12 gi|159042190|ref|YP_001541442.1| - 0.011 14.0 0.9 0.011 14.0 0.9 1.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA YabA PF06156.13 gi|159042190|ref|YP_001541442.1| - 0.014 16.0 1.0 0.014 16.0 1.0 1.9 2 0 0 2 2 2 0 Initiation control protein YabA DivIVA PF05103.13 gi|159042190|ref|YP_001541442.1| - 0.02 15.0 1.3 0.02 15.0 1.3 1.7 2 0 0 2 2 1 0 DivIVA protein Macoilin PF09726.9 gi|159042190|ref|YP_001541442.1| - 0.023 13.3 0.1 0.023 13.3 0.1 1.1 1 0 0 1 1 1 0 Macoilin family DUF2258 PF10015.9 gi|159042190|ref|YP_001541442.1| - 0.037 14.1 0.8 0.086 13.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2258) EMP24_GP25L PF01105.24 gi|159042190|ref|YP_001541442.1| - 0.046 13.7 0.8 0.071 13.0 0.8 1.3 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Seryl_tRNA_N PF02403.22 gi|159042190|ref|YP_001541442.1| - 0.048 13.9 1.9 0.048 13.9 1.9 2.0 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TolA_bind_tri PF16331.5 gi|159042190|ref|YP_001541442.1| - 0.051 13.7 2.3 0.096 12.8 2.3 1.4 1 0 0 1 1 1 0 TolA binding protein trimerisation SatD PF16264.5 gi|159042190|ref|YP_001541442.1| - 0.052 13.2 0.1 0.095 12.3 0.1 1.4 1 0 0 1 1 1 0 SatD family (SatD) Prp19 PF08606.11 gi|159042190|ref|YP_001541442.1| - 0.057 13.4 0.5 0.13 12.3 0.5 1.5 1 0 0 1 1 1 0 Prp19/Pso4-like KxDL PF10241.9 gi|159042190|ref|YP_001541442.1| - 0.14 12.5 2.5 0.23 11.7 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein KH_4 PF13083.6 gi|159042190|ref|YP_001541442.1| - 0.16 11.9 0.8 0.32 10.9 0.2 1.7 2 0 0 2 2 2 0 KH domain DivIC PF04977.15 gi|159042190|ref|YP_001541442.1| - 0.2 11.4 5.4 0.77 9.6 5.4 2.0 1 1 0 1 1 1 0 Septum formation initiator FlaC_arch PF05377.11 gi|159042190|ref|YP_001541442.1| - 0.25 11.8 6.2 0.72 10.3 3.7 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|159042190|ref|YP_001541442.1| - 0.66 8.8 6.3 0.1 11.5 2.1 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Fungal_TACC PF12709.7 gi|159042190|ref|YP_001541442.1| - 2.7 8.5 7.0 0.53 10.8 3.2 1.8 2 0 0 2 2 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins TMF_DNA_bd PF12329.8 gi|159042190|ref|YP_001541442.1| - 6 6.9 12.4 0.82 9.7 7.7 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Ribosomal_S8e PF01201.22 gi|159042191|ref|YP_001541443.1| - 7.2e-28 97.5 0.7 8.2e-28 97.3 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF807 PF05660.11 gi|159042191|ref|YP_001541443.1| - 0.05 13.6 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF807) Gar1 PF04410.14 gi|159042192|ref|YP_001541444.1| - 0.00019 21.3 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Inhibitor_I78 PF11720.8 gi|159042192|ref|YP_001541444.1| - 0.073 13.1 0.3 0.16 12.1 0.2 1.7 2 1 0 2 2 2 0 Peptidase inhibitor I78 family TF_Zn_Ribbon PF08271.12 gi|159042193|ref|YP_001541445.1| - 1.8e-14 53.0 1.0 3e-14 52.2 1.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|159042193|ref|YP_001541445.1| - 1.3e-10 41.2 0.3 0.00011 22.1 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Ribosomal_S27e PF01667.17 gi|159042193|ref|YP_001541445.1| - 0.00026 20.7 0.2 0.00049 19.7 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|159042193|ref|YP_001541445.1| - 0.00041 20.7 0.6 0.0035 17.7 0.6 2.1 2 0 0 2 2 2 1 Restriction alleviation protein Lar HTH_AsnC-type PF13404.6 gi|159042193|ref|YP_001541445.1| - 0.016 15.1 0.0 0.034 14.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain zf-RRN7 PF11781.8 gi|159042193|ref|YP_001541445.1| - 0.018 14.7 1.6 0.036 13.7 1.6 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rrf2 PF02082.20 gi|159042193|ref|YP_001541445.1| - 0.046 14.1 0.2 8.6 6.8 0.1 2.7 2 0 0 2 2 2 0 Transcriptional regulator Prim_Zn_Ribbon PF08273.12 gi|159042193|ref|YP_001541445.1| - 0.053 13.8 0.3 0.11 12.8 0.3 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|159042193|ref|YP_001541445.1| - 0.077 12.4 4.1 2.3 7.8 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HTH_Crp_2 PF13545.6 gi|159042193|ref|YP_001541445.1| - 0.13 12.3 0.1 0.41 10.7 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2318 PF10080.9 gi|159042193|ref|YP_001541445.1| - 0.13 12.4 0.6 0.26 11.4 0.6 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Sigma70_r4_2 PF08281.12 gi|159042193|ref|YP_001541445.1| - 0.14 11.9 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 zinc_ribbon_5 PF13719.6 gi|159042193|ref|YP_001541445.1| - 0.14 11.9 1.1 0.47 10.3 1.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|159042193|ref|YP_001541445.1| - 0.72 9.7 4.7 3.8 7.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Usg PF06233.12 gi|159042194|ref|YP_001541446.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Usg-like family RNA_Me_trans PF04252.13 gi|159042194|ref|YP_001541446.1| - 0.16 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase AAA_assoc_C PF09821.9 gi|159042195|ref|YP_001541447.1| - 5.9e-25 88.1 0.0 7.2e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain DUF5520 PF17658.1 gi|159042195|ref|YP_001541447.1| - 0.0024 17.0 0.0 0.003 16.7 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5520) HTH_23 PF13384.6 gi|159042196|ref|YP_001541448.1| - 1.6e-07 30.9 0.1 2.8e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|159042196|ref|YP_001541448.1| - 5.4e-06 26.0 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|159042196|ref|YP_001541448.1| - 5.5e-05 23.0 0.0 9.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) TnsD PF15978.5 gi|159042196|ref|YP_001541448.1| - 6.2e-05 22.1 0.0 0.00011 21.4 0.0 1.3 1 1 0 1 1 1 1 Tn7-like transposition protein D HTH_28 PF13518.6 gi|159042196|ref|YP_001541448.1| - 6.3e-05 23.0 0.1 0.0001 22.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|159042196|ref|YP_001541448.1| - 0.0012 18.3 0.0 0.0027 17.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|159042196|ref|YP_001541448.1| - 0.0023 18.3 0.0 0.0071 16.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|159042196|ref|YP_001541448.1| - 0.0028 17.4 0.0 0.0055 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|159042196|ref|YP_001541448.1| - 0.0039 16.9 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family GerE PF00196.19 gi|159042196|ref|YP_001541448.1| - 0.0048 16.4 0.0 0.014 14.9 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|159042196|ref|YP_001541448.1| - 0.01 15.8 0.1 0.036 14.0 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_29 PF13551.6 gi|159042196|ref|YP_001541448.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_ECF PF07638.11 gi|159042196|ref|YP_001541448.1| - 0.017 15.1 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor TrmB PF01978.19 gi|159042196|ref|YP_001541448.1| - 0.018 14.9 0.2 0.046 13.6 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|159042196|ref|YP_001541448.1| - 0.026 14.6 0.1 0.048 13.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|159042196|ref|YP_001541448.1| - 0.03 14.5 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|159042196|ref|YP_001541448.1| - 0.03 14.4 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|159042196|ref|YP_001541448.1| - 0.045 13.7 0.1 0.13 12.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|159042196|ref|YP_001541448.1| - 0.047 13.5 0.0 0.088 12.6 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|159042196|ref|YP_001541448.1| - 0.069 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|159042196|ref|YP_001541448.1| - 0.087 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|159042196|ref|YP_001541448.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_3 PF01381.22 gi|159042196|ref|YP_001541448.1| - 0.13 12.4 0.1 0.33 11.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix GntR PF00392.21 gi|159042196|ref|YP_001541448.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|159042196|ref|YP_001541448.1| - 0.16 11.9 0.0 0.56 10.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain NPCBM_assoc PF10633.9 gi|159042197|ref|YP_001541449.1| - 5.3e-18 65.1 11.9 8.2e-05 22.8 0.3 6.8 7 0 0 7 7 7 4 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|159042197|ref|YP_001541449.1| - 1.8e-06 27.5 10.7 0.023 14.1 0.2 5.1 5 0 0 5 5 5 3 Translocon-associated protein beta (TRAPB) Wzt_C PF14524.6 gi|159042197|ref|YP_001541449.1| - 0.18 11.8 0.8 5.2 7.1 0.0 3.0 4 0 0 4 4 4 0 Wzt C-terminal domain SCPU PF05229.15 gi|159042197|ref|YP_001541449.1| - 0.83 10.1 6.5 7.7 6.9 0.3 3.1 4 0 0 4 4 4 0 Spore Coat Protein U domain DUF11 PF01345.18 gi|159042197|ref|YP_001541449.1| - 7.3 7.0 31.7 0.66 10.3 0.4 6.1 5 2 1 6 6 6 0 Domain of unknown function DUF11 FCD PF07729.12 gi|159042198|ref|YP_001541450.1| - 9.8e-23 80.9 0.4 9.8e-23 80.9 0.4 1.6 2 1 0 2 2 2 1 FCD domain GntR PF00392.21 gi|159042198|ref|YP_001541450.1| - 6.7e-18 64.1 0.3 1.3e-17 63.1 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|159042198|ref|YP_001541450.1| - 9e-05 22.4 0.2 0.00027 20.9 0.1 1.8 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|159042198|ref|YP_001541450.1| - 0.001 18.9 0.0 0.0029 17.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|159042198|ref|YP_001541450.1| - 0.0013 18.3 0.0 0.0033 16.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|159042198|ref|YP_001541450.1| - 0.017 15.6 0.0 0.039 14.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1128 PF06569.11 gi|159042198|ref|YP_001541450.1| - 0.022 14.7 0.4 0.16 12.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1128) HTH_IclR PF09339.10 gi|159042198|ref|YP_001541450.1| - 0.03 14.1 0.0 0.071 12.9 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|159042198|ref|YP_001541450.1| - 0.068 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|159042198|ref|YP_001541450.1| - 0.08 13.2 0.3 0.48 10.7 0.1 2.3 2 1 1 3 3 3 0 PaaX-like protein HTH_29 PF13551.6 gi|159042198|ref|YP_001541450.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF608 PF04685.13 gi|159042199|ref|YP_001541451.1| - 5.8e-70 236.3 0.0 4e-68 230.2 0.0 2.1 1 1 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|159042199|ref|YP_001541451.1| - 4.8e-13 49.3 0.2 1.4e-12 47.8 0.2 1.8 1 1 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term Glyco_hydro_52 PF03512.13 gi|159042199|ref|YP_001541451.1| - 0.19 10.7 0.0 0.31 9.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 52 Carb_kinase PF01256.17 gi|159042201|ref|YP_001541453.1| - 1.5e-45 155.6 0.8 2.6e-45 154.8 0.8 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|159042201|ref|YP_001541453.1| - 9.7e-45 152.5 0.1 1.6e-44 151.8 0.1 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|159042201|ref|YP_001541453.1| - 1.1e-05 25.0 0.1 2e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|159042201|ref|YP_001541453.1| - 0.021 14.2 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase SpoIIM PF01944.17 gi|159042204|ref|YP_001541456.1| - 5.4e-10 39.5 13.7 7.5e-10 39.1 13.7 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M DUF3262 PF11660.8 gi|159042205|ref|YP_001541457.1| - 4.1 7.9 8.8 1.5 9.3 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) Vma12 PF11712.8 gi|159042205|ref|YP_001541457.1| - 6.4 6.8 7.0 58 3.7 7.0 1.9 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Ribosomal_S11 PF00411.19 gi|159042206|ref|YP_001541458.1| - 2.2e-44 150.3 2.6 2.8e-44 150.0 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 BTV_NS2 PF04514.12 gi|159042206|ref|YP_001541458.1| - 0.041 12.7 0.1 0.053 12.3 0.1 1.1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 AIRS PF00586.24 gi|159042207|ref|YP_001541459.1| - 1.6e-12 47.9 0.0 2.8e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1980 PF09323.10 gi|159042207|ref|YP_001541459.1| - 0.13 12.1 0.1 0.21 11.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) CTP_transf_like PF01467.26 gi|159042208|ref|YP_001541460.1| - 3.5e-09 37.0 0.0 5.2e-09 36.4 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase-like T2SSF PF00482.23 gi|159042209|ref|YP_001541461.1| - 2.4e-26 92.1 20.7 1.5e-16 60.5 0.1 4.6 4 0 0 4 4 4 3 Type II secretion system (T2SS), protein F UDG PF03167.19 gi|159042210|ref|YP_001541462.1| - 8.3e-46 155.8 0.0 1e-45 155.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily CdvA PF18822.1 gi|159042211|ref|YP_001541463.1| - 1.3e-09 38.0 14.7 1.5e-06 28.0 10.6 2.5 2 1 0 2 2 2 2 CdvA-like coiled-coil domain Baculo_LEF-11 PF06385.12 gi|159042211|ref|YP_001541463.1| - 0.0053 17.2 2.7 0.011 16.3 0.2 2.4 2 1 1 3 3 2 1 Baculovirus LEF-11 protein SHOCT PF09851.9 gi|159042211|ref|YP_001541463.1| - 0.011 15.4 6.9 0.12 12.1 0.9 2.9 3 0 0 3 3 3 0 Short C-terminal domain PspA_IM30 PF04012.12 gi|159042211|ref|YP_001541463.1| - 0.011 15.3 15.2 0.049 13.2 6.0 2.2 1 1 1 2 2 2 0 PspA/IM30 family GvpG PF05120.12 gi|159042211|ref|YP_001541463.1| - 0.021 14.8 2.5 2.2 8.4 0.4 2.8 1 1 0 2 2 2 0 Gas vesicle protein G MIF4G_like_2 PF09090.11 gi|159042211|ref|YP_001541463.1| - 0.026 14.0 3.5 0.041 13.4 3.5 1.3 1 0 0 1 1 1 0 MIF4G like WXG100 PF06013.12 gi|159042211|ref|YP_001541463.1| - 0.028 14.6 3.5 0.13 12.6 0.1 2.6 3 0 0 3 3 2 0 Proteins of 100 residues with WXG DUF745 PF05335.13 gi|159042211|ref|YP_001541463.1| - 0.041 13.6 11.2 0.016 14.9 2.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF1664 PF07889.12 gi|159042211|ref|YP_001541463.1| - 0.049 13.7 8.7 0.46 10.5 0.9 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) AbiH PF14253.6 gi|159042211|ref|YP_001541463.1| - 0.054 13.4 2.4 0.072 13.0 2.4 1.2 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH Med11 PF10280.9 gi|159042211|ref|YP_001541463.1| - 0.069 13.6 4.5 0.088 13.3 2.2 2.1 1 1 1 2 2 2 0 Mediator complex protein Prefoldin PF02996.17 gi|159042211|ref|YP_001541463.1| - 0.082 12.8 14.3 0.026 14.4 6.5 3.6 2 1 1 3 3 3 0 Prefoldin subunit COG5 PF10392.9 gi|159042211|ref|YP_001541463.1| - 0.11 12.7 6.2 0.15 12.3 3.0 2.5 1 1 2 3 3 3 0 Golgi transport complex subunit 5 YojJ PF10372.9 gi|159042211|ref|YP_001541463.1| - 0.18 11.9 3.1 1.1 9.4 0.2 3.0 3 0 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus Fib_alpha PF08702.10 gi|159042211|ref|YP_001541463.1| - 0.22 11.7 12.0 0.13 12.4 0.5 2.8 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF1657 PF07870.11 gi|159042211|ref|YP_001541463.1| - 0.26 11.2 5.4 2.3 8.2 0.0 3.9 5 0 0 5 5 4 0 Protein of unknown function (DUF1657) XhlA PF10779.9 gi|159042211|ref|YP_001541463.1| - 0.38 11.0 7.3 0.43 10.8 0.3 3.3 2 2 2 4 4 4 0 Haemolysin XhlA Spc7 PF08317.11 gi|159042211|ref|YP_001541463.1| - 0.52 9.1 15.0 0.11 11.3 10.8 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein Nre_C PF04895.12 gi|159042211|ref|YP_001541463.1| - 0.54 10.2 5.0 3.4 7.6 0.5 2.8 2 1 0 2 2 2 0 Archaeal Nre, C-terminal Syntaxin-6_N PF09177.11 gi|159042211|ref|YP_001541463.1| - 0.68 10.5 10.8 91 3.7 10.6 2.9 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Prominin PF05478.11 gi|159042211|ref|YP_001541463.1| - 0.73 7.7 9.3 2 6.3 0.5 2.1 1 1 1 2 2 2 0 Prominin Laminin_II PF06009.12 gi|159042211|ref|YP_001541463.1| - 0.83 9.7 9.6 0.9 9.6 1.0 2.6 2 1 0 2 2 2 0 Laminin Domain II ApoO PF09769.9 gi|159042211|ref|YP_001541463.1| - 1.1 9.2 5.1 8.3 6.4 0.1 2.9 2 1 0 2 2 2 0 Apolipoprotein O DUF1515 PF07439.11 gi|159042211|ref|YP_001541463.1| - 1.2 9.2 6.1 0.66 10.0 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1515) MIP-T3_C PF17749.1 gi|159042211|ref|YP_001541463.1| - 1.4 8.8 13.1 1.1 9.3 2.1 3.3 1 1 3 4 4 4 0 Microtubule-binding protein MIP-T3 C-terminal region COG2 PF06148.11 gi|159042211|ref|YP_001541463.1| - 1.4 9.0 9.6 1.6 8.8 2.6 2.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 zf-CpG_bind_C PF12269.8 gi|159042211|ref|YP_001541463.1| - 1.7 8.4 10.6 0.58 9.9 1.9 2.8 1 1 2 3 3 3 0 CpG binding protein zinc finger C terminal domain eIF3_N PF09440.10 gi|159042211|ref|YP_001541463.1| - 2.3 8.6 11.7 1.9 8.9 0.5 2.7 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain TMPIT PF07851.13 gi|159042211|ref|YP_001541463.1| - 2.6 7.2 9.4 1.7 7.8 7.8 1.6 1 1 0 1 1 1 0 TMPIT-like protein APG6_N PF17675.1 gi|159042211|ref|YP_001541463.1| - 4.2 7.9 12.0 1.7 9.2 8.7 2.0 1 1 1 2 2 2 0 Apg6 coiled-coil region CdvA PF18822.1 gi|159042212|ref|YP_001541464.1| - 5.3e-08 32.7 9.7 3.2e-06 27.0 4.0 2.7 2 1 0 2 2 2 2 CdvA-like coiled-coil domain BST2 PF16716.5 gi|159042212|ref|YP_001541464.1| - 7.3e-08 32.9 2.2 0.0068 17.0 0.0 2.9 3 0 0 3 3 3 2 Bone marrow stromal antigen 2 SHOCT PF09851.9 gi|159042212|ref|YP_001541464.1| - 0.00013 21.5 5.1 0.0014 18.3 0.1 3.4 4 0 0 4 4 3 1 Short C-terminal domain TPR_MLP1_2 PF07926.12 gi|159042212|ref|YP_001541464.1| - 0.0011 19.0 5.3 0.032 14.3 0.0 2.9 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein Cep57_CLD_2 PF14197.6 gi|159042212|ref|YP_001541464.1| - 0.0016 18.5 1.1 0.0016 18.5 1.1 3.0 3 1 0 3 3 3 1 Centrosome localisation domain of PPC89 KASH_CCD PF14662.6 gi|159042212|ref|YP_001541464.1| - 0.0016 18.3 7.5 0.011 15.5 2.4 2.3 2 1 0 2 2 2 1 Coiled-coil region of CCDC155 or KASH Fmp27_WPPW PF10359.9 gi|159042212|ref|YP_001541464.1| - 0.0019 17.2 0.8 0.0027 16.6 0.7 1.4 1 1 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain TMPIT PF07851.13 gi|159042212|ref|YP_001541464.1| - 0.0028 17.0 0.8 0.0044 16.3 0.5 1.4 1 1 0 1 1 1 1 TMPIT-like protein FliJ PF02050.16 gi|159042212|ref|YP_001541464.1| - 0.0028 17.9 4.1 0.58 10.4 0.0 3.1 1 1 2 3 3 3 1 Flagellar FliJ protein GvpG PF05120.12 gi|159042212|ref|YP_001541464.1| - 0.0033 17.4 2.6 0.9 9.6 0.1 2.3 2 0 0 2 2 2 1 Gas vesicle protein G TFA2_Winged_2 PF18121.1 gi|159042212|ref|YP_001541464.1| - 0.0037 16.9 1.3 1.1 9.0 0.1 2.9 2 1 0 2 2 2 1 TFA2 Winged helix domain 2 FapA PF03961.13 gi|159042212|ref|YP_001541464.1| - 0.0037 15.9 4.8 0.0057 15.3 3.8 1.9 1 1 1 2 2 2 1 Flagellar Assembly Protein A DUF16 PF01519.16 gi|159042212|ref|YP_001541464.1| - 0.0047 17.4 6.1 2.3 8.8 0.2 3.0 1 1 2 3 3 3 2 Protein of unknown function DUF16 PspA_IM30 PF04012.12 gi|159042212|ref|YP_001541464.1| - 0.007 16.0 2.2 0.029 14.0 1.5 2.5 1 1 1 2 2 2 1 PspA/IM30 family DUF2203 PF09969.9 gi|159042212|ref|YP_001541464.1| - 0.0087 16.8 3.4 0.56 10.9 0.1 2.7 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2203) Syntaxin PF00804.25 gi|159042212|ref|YP_001541464.1| - 0.011 15.4 1.2 0.023 14.4 1.2 1.6 1 1 0 1 1 1 0 Syntaxin Fib_alpha PF08702.10 gi|159042212|ref|YP_001541464.1| - 0.019 15.1 5.1 2.5 8.3 0.1 3.0 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|159042212|ref|YP_001541464.1| - 0.021 14.2 2.0 0.073 12.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|159042212|ref|YP_001541464.1| - 0.024 13.5 6.0 0.14 11.0 6.1 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein TarH PF02203.15 gi|159042212|ref|YP_001541464.1| - 0.029 14.3 0.4 0.53 10.2 0.1 2.2 2 0 0 2 2 2 0 Tar ligand binding domain homologue Occludin_ELL PF07303.13 gi|159042212|ref|YP_001541464.1| - 0.033 14.9 4.6 0.67 10.7 0.1 2.8 1 1 0 2 2 2 0 Occludin homology domain PI3K_P85_iSH2 PF16454.5 gi|159042212|ref|YP_001541464.1| - 0.037 13.6 4.7 1.3 8.6 0.3 3.0 2 1 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain MbeD_MobD PF04899.12 gi|159042212|ref|YP_001541464.1| - 0.04 14.0 0.6 0.45 10.7 0.0 2.6 2 1 0 2 2 2 0 MbeD/MobD like OEP PF02321.18 gi|159042212|ref|YP_001541464.1| - 0.041 13.7 8.6 0.094 12.5 1.3 2.7 2 1 1 3 3 3 0 Outer membrane efflux protein Arg_decarbox_C PF17944.1 gi|159042212|ref|YP_001541464.1| - 0.047 14.2 3.7 30 5.3 0.2 3.5 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension DUF3053 PF11254.8 gi|159042212|ref|YP_001541464.1| - 0.051 13.2 0.1 0.39 10.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) Lebercilin PF15619.6 gi|159042212|ref|YP_001541464.1| - 0.066 12.9 8.3 3 7.5 1.4 3.5 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Goodbye PF17109.5 gi|159042212|ref|YP_001541464.1| - 0.07 13.6 1.1 3.1 8.3 0.1 2.8 2 1 1 3 3 3 0 fungal STAND N-terminal Goodbye domain DUF1664 PF07889.12 gi|159042212|ref|YP_001541464.1| - 0.096 12.7 1.4 2.1 8.4 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Tropomyosin PF00261.20 gi|159042212|ref|YP_001541464.1| - 0.097 12.0 11.0 1.4 8.2 4.0 2.8 2 1 0 2 2 2 0 Tropomyosin DUF2115 PF09888.9 gi|159042212|ref|YP_001541464.1| - 0.11 13.0 1.7 0.31 11.6 0.4 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) Spectrin PF00435.21 gi|159042212|ref|YP_001541464.1| - 0.13 12.8 3.9 4.5 7.8 0.1 3.2 2 2 0 3 3 3 0 Spectrin repeat DUF3987 PF13148.6 gi|159042212|ref|YP_001541464.1| - 0.14 11.1 0.8 0.21 10.6 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) DUF2524 PF10732.9 gi|159042212|ref|YP_001541464.1| - 0.14 12.4 6.7 1.4 9.2 0.7 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2524) DUF745 PF05335.13 gi|159042212|ref|YP_001541464.1| - 0.15 11.8 1.4 10 5.8 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF745) HMMR_N PF15905.5 gi|159042212|ref|YP_001541464.1| - 0.19 11.2 6.9 0.03 13.8 1.7 1.8 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal TSNAXIP1_N PF15739.5 gi|159042212|ref|YP_001541464.1| - 0.33 11.4 5.3 0.51 10.7 2.2 2.6 1 1 0 2 2 2 0 Translin-associated factor X-interacting N-terminus FlaC_arch PF05377.11 gi|159042212|ref|YP_001541464.1| - 0.35 11.3 7.7 1.5 9.3 0.1 3.8 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|159042212|ref|YP_001541464.1| - 0.37 10.8 8.8 13 5.9 7.8 2.8 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mis14 PF08641.12 gi|159042212|ref|YP_001541464.1| - 0.39 11.0 3.6 2 8.8 1.1 2.7 2 1 0 2 2 2 0 Kinetochore protein Mis14 like 23S_rRNA_IVP PF05635.11 gi|159042212|ref|YP_001541464.1| - 0.47 10.8 4.9 14 6.0 0.7 3.2 1 1 2 3 3 3 0 23S rRNA-intervening sequence protein DUF4298 PF14131.6 gi|159042212|ref|YP_001541464.1| - 0.49 10.4 4.7 30 4.6 0.0 3.7 2 2 1 3 3 3 0 Domain of unknown function (DUF4298) CENP-Q PF13094.6 gi|159042212|ref|YP_001541464.1| - 0.84 9.8 6.0 0.19 11.9 0.7 2.0 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4795 PF16043.5 gi|159042212|ref|YP_001541464.1| - 1.1 8.8 6.8 3.2 7.3 4.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) DHR10 PF18595.1 gi|159042212|ref|YP_001541464.1| - 1.7 8.7 7.8 3.5 7.7 0.4 3.3 1 1 1 3 3 3 0 Designed helical repeat protein 10 domain Rootletin PF15035.6 gi|159042212|ref|YP_001541464.1| - 2.8 7.9 8.3 1.4 8.9 1.2 2.3 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Peptidase_M24 PF00557.24 gi|159042213|ref|YP_001541465.1| - 1.6e-58 197.8 0.2 2.3e-58 197.3 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|159042213|ref|YP_001541465.1| - 5.1e-08 33.6 0.0 9.2e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Creatinase_N_2 PF16189.5 gi|159042213|ref|YP_001541465.1| - 0.083 13.0 0.0 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 Creatinase/Prolidase N-terminal domain Inos-1-P_synth PF01658.17 gi|159042214|ref|YP_001541466.1| - 2.1e-23 82.7 0.0 2.8e-22 79.0 0.0 2.1 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|159042214|ref|YP_001541466.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase Methyltransf_11 PF08241.12 gi|159042215|ref|YP_001541467.1| - 4.7e-21 75.2 0.0 6.5e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159042215|ref|YP_001541467.1| - 1e-18 67.8 0.0 1.5e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|159042215|ref|YP_001541467.1| - 4.9e-17 62.1 0.0 5.8e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|159042215|ref|YP_001541467.1| - 5.4e-14 52.1 0.1 7.2e-14 51.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|159042215|ref|YP_001541467.1| - 9.2e-14 52.0 0.0 1.2e-13 51.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|159042215|ref|YP_001541467.1| - 4.4e-13 49.4 0.0 5.1e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|159042215|ref|YP_001541467.1| - 7.1e-08 32.2 0.0 8.6e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|159042215|ref|YP_001541467.1| - 1.1e-06 28.7 0.4 4.4e-06 26.7 0.4 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 gi|159042215|ref|YP_001541467.1| - 2.2e-06 27.4 0.1 2.8e-06 27.1 0.1 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 gi|159042215|ref|YP_001541467.1| - 2.6e-06 27.2 0.1 3.5e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|159042215|ref|YP_001541467.1| - 1.2e-05 24.7 0.1 1.5e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain TehB PF03848.14 gi|159042215|ref|YP_001541467.1| - 1.2e-05 24.8 0.0 1.5e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|159042215|ref|YP_001541467.1| - 0.00024 20.6 0.0 0.0009 18.7 0.0 1.9 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|159042215|ref|YP_001541467.1| - 0.0011 18.9 0.1 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|159042215|ref|YP_001541467.1| - 0.002 17.6 0.7 0.0038 16.7 0.6 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.12 gi|159042215|ref|YP_001541467.1| - 0.0031 16.6 0.0 0.0041 16.3 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.6 gi|159042215|ref|YP_001541467.1| - 0.0042 17.1 0.0 0.0054 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|159042215|ref|YP_001541467.1| - 0.0046 16.7 0.2 0.0086 15.8 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|159042215|ref|YP_001541467.1| - 0.01 15.9 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_29 PF03141.16 gi|159042215|ref|YP_001541467.1| - 0.076 11.6 0.8 0.42 9.1 0.1 1.8 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_24 PF13578.6 gi|159042215|ref|YP_001541467.1| - 0.12 13.4 0.0 0.2 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Glyco_tranf_2_3 PF13641.6 gi|159042216|ref|YP_001541468.1| - 2.3e-17 63.7 0.0 3.4e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|159042216|ref|YP_001541468.1| - 1.2e-15 57.7 0.0 2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|159042216|ref|YP_001541468.1| - 5.9e-11 42.7 7.8 5.9e-11 42.7 7.8 2.3 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|159042216|ref|YP_001541468.1| - 8.3e-08 31.9 0.0 1.4e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 ABC2_membrane PF01061.24 gi|159042218|ref|YP_001541470.1| - 1.2e-10 41.2 26.5 1.2e-10 41.2 26.5 2.0 1 1 1 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|159042218|ref|YP_001541470.1| - 0.12 11.4 35.0 0.004 16.3 26.0 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|159042218|ref|YP_001541470.1| - 1.7 8.6 20.6 0.1 12.5 14.0 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|159042219|ref|YP_001541471.1| - 8.5e-24 84.6 0.0 1.3e-23 84.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159042219|ref|YP_001541471.1| - 2.1e-13 50.7 0.1 2.3e-08 34.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|159042219|ref|YP_001541471.1| - 0.0015 19.2 0.0 0.0042 17.8 0.0 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|159042219|ref|YP_001541471.1| - 0.0024 17.6 0.1 0.0048 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|159042219|ref|YP_001541471.1| - 0.0027 17.6 0.0 0.0044 16.9 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal Rad17 PF03215.15 gi|159042219|ref|YP_001541471.1| - 0.0062 16.5 0.0 0.0077 16.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|159042219|ref|YP_001541471.1| - 0.0088 16.5 0.0 0.053 14.0 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|159042219|ref|YP_001541471.1| - 0.08 12.6 0.0 2.3 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|159042219|ref|YP_001541471.1| - 0.082 13.1 0.0 0.24 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|159042219|ref|YP_001541471.1| - 0.084 13.4 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|159042219|ref|YP_001541471.1| - 0.1 12.0 0.0 13 5.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|159042219|ref|YP_001541471.1| - 0.16 12.5 0.2 0.37 11.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|159042219|ref|YP_001541471.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|159042219|ref|YP_001541471.1| - 0.21 11.2 0.1 0.35 10.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Auto_anti-p27 PF06677.12 gi|159042220|ref|YP_001541472.1| - 3.7e-13 49.4 1.7 5.2e-13 48.9 1.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_SprT PF17283.2 gi|159042220|ref|YP_001541472.1| - 0.0002 21.2 0.9 0.00028 20.7 0.9 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain GFA PF04828.14 gi|159042220|ref|YP_001541472.1| - 0.00046 20.5 0.1 0.8 10.1 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme zf-FPG_IleRS PF06827.14 gi|159042220|ref|YP_001541472.1| - 0.00094 19.0 0.9 0.0016 18.2 0.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|159042220|ref|YP_001541472.1| - 0.0033 17.4 0.2 0.0051 16.8 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|159042220|ref|YP_001541472.1| - 0.0047 16.4 2.5 0.0079 15.7 2.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|159042220|ref|YP_001541472.1| - 0.007 16.3 0.2 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|159042220|ref|YP_001541472.1| - 0.015 15.2 0.2 0.03 14.2 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.16 gi|159042220|ref|YP_001541472.1| - 0.019 15.0 1.9 0.019 15.0 1.9 2.0 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|159042220|ref|YP_001541472.1| - 0.023 14.8 1.2 5.9 7.1 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|159042220|ref|YP_001541472.1| - 0.025 14.3 1.2 0.058 13.1 1.2 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RRPl_C4 PF17026.5 gi|159042220|ref|YP_001541472.1| - 0.032 14.3 0.3 0.037 14.1 0.3 1.3 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type Elf1 PF05129.13 gi|159042220|ref|YP_001541472.1| - 0.036 14.1 0.6 0.71 10.0 0.6 2.2 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|159042220|ref|YP_001541472.1| - 0.041 13.5 0.7 6.2 6.5 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|159042220|ref|YP_001541472.1| - 0.043 13.2 1.5 0.083 12.2 1.5 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger C1_2 PF03107.16 gi|159042220|ref|YP_001541472.1| - 0.049 14.0 0.3 0.079 13.3 0.3 1.3 1 0 0 1 1 1 0 C1 domain zinc_ribbon_2 PF13240.6 gi|159042220|ref|YP_001541472.1| - 0.053 13.2 3.7 0.8 9.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|159042220|ref|YP_001541472.1| - 0.054 13.5 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|159042220|ref|YP_001541472.1| - 0.07 13.1 0.4 0.1 12.6 0.4 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|159042220|ref|YP_001541472.1| - 0.073 13.3 0.4 1.6 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon RPA_interact_C PF14768.6 gi|159042220|ref|YP_001541472.1| - 0.11 13.1 0.4 0.2 12.2 0.4 1.4 1 1 0 1 1 1 0 Replication protein A interacting C-terminal Sgf11 PF08209.11 gi|159042220|ref|YP_001541472.1| - 0.12 12.0 1.6 1.3 8.6 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.13 gi|159042220|ref|YP_001541472.1| - 0.21 11.3 1.9 2 8.2 0.5 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|159042220|ref|YP_001541472.1| - 0.34 10.4 4.0 0.98 8.9 4.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.16 gi|159042220|ref|YP_001541472.1| - 2.3 8.2 7.5 2.2 8.2 4.2 2.0 1 1 1 2 2 2 0 HIT zinc finger Glyco_hydro_31 PF01055.26 gi|159042221|ref|YP_001541473.1| - 2.4e-99 333.5 0.0 4.1e-99 332.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|159042221|ref|YP_001541473.1| - 1.6e-12 47.6 0.2 4.6e-12 46.1 0.2 1.9 1 0 0 1 1 1 1 Galactose mutarotase-like Glyco_hydro_20 PF00728.22 gi|159042222|ref|YP_001541474.1| - 2.5e-16 60.0 0.0 1.2e-15 57.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain AP_endonuc_2 PF01261.24 gi|159042223|ref|YP_001541475.1| - 1e-27 97.0 0.0 1.4e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|159042223|ref|YP_001541475.1| - 0.00088 19.0 0.0 0.0019 17.9 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus MFS_1 PF07690.16 gi|159042224|ref|YP_001541476.1| - 5.5e-21 74.9 65.4 7.7e-15 54.7 50.0 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159042224|ref|YP_001541476.1| - 0.00018 20.5 6.8 0.00018 20.5 6.8 4.0 2 2 2 4 4 4 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|159042224|ref|YP_001541476.1| - 0.013 14.3 40.6 0.091 11.6 40.6 2.0 1 1 0 1 1 1 0 MFS_1 like family Peptidase_M19 PF01244.21 gi|159042225|ref|YP_001541477.1| - 2.2e-67 227.5 0.0 2.5e-67 227.3 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) bVLRF1 PF18826.1 gi|159042225|ref|YP_001541477.1| - 0.1 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 bacteroidetes VLRF1 release factor DUF2250 PF10007.9 gi|159042226|ref|YP_001541478.1| - 0.0099 16.0 0.0 0.035 14.2 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) AdoHcyase PF05221.17 gi|159042227|ref|YP_001541479.1| - 1.1e-74 251.3 0.0 1.6e-74 250.8 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|159042227|ref|YP_001541479.1| - 2.9e-55 186.8 0.2 4.4e-55 186.2 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|159042227|ref|YP_001541479.1| - 5.1e-08 32.5 0.1 1e-07 31.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|159042227|ref|YP_001541479.1| - 1.5e-05 24.7 0.2 2.7e-05 23.8 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain BcrAD_BadFG PF01869.20 gi|159042228|ref|YP_001541480.1| - 8e-29 101.0 0.9 9.8e-29 100.7 0.9 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|159042228|ref|YP_001541480.1| - 0.00024 20.7 0.0 0.68 9.4 0.0 2.2 2 0 0 2 2 2 2 ROK family Peptidase_S66 PF02016.15 gi|159042229|ref|YP_001541481.1| - 5.7e-32 110.4 0.0 8.9e-32 109.7 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|159042229|ref|YP_001541481.1| - 6e-19 68.8 0.0 8.4e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Radical_SAM PF04055.21 gi|159042230|ref|YP_001541482.1| - 1.9e-24 86.9 0.0 3.8e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|159042230|ref|YP_001541482.1| - 7.7e-22 77.6 0.0 1.2e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|159042230|ref|YP_001541482.1| - 4.7e-07 30.1 0.0 1.1e-06 29.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|159042230|ref|YP_001541482.1| - 4.3e-05 23.6 0.0 9.5e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fib_alpha PF08702.10 gi|159042231|ref|YP_001541483.1| - 0.0016 18.7 7.3 0.0016 18.7 5.3 1.9 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.15 gi|159042231|ref|YP_001541483.1| - 0.014 15.0 1.4 0.02 14.4 1.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DivIC PF04977.15 gi|159042231|ref|YP_001541483.1| - 0.028 14.2 9.6 1.2 9.0 0.2 4.0 3 1 1 4 4 4 0 Septum formation initiator Snapin_Pallidin PF14712.6 gi|159042231|ref|YP_001541483.1| - 0.028 14.8 7.3 0.64 10.5 1.4 3.0 1 1 1 2 2 2 0 Snapin/Pallidin CorA PF01544.18 gi|159042231|ref|YP_001541483.1| - 0.044 13.1 5.5 0.068 12.5 5.5 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein PRC PF05239.16 gi|159042231|ref|YP_001541483.1| - 0.046 13.8 1.2 0.099 12.7 1.2 1.6 1 0 0 1 1 1 0 PRC-barrel domain Apolipoprotein PF01442.18 gi|159042231|ref|YP_001541483.1| - 0.093 12.6 3.7 0.18 11.6 3.7 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain CdvA PF18822.1 gi|159042231|ref|YP_001541483.1| - 0.11 12.3 14.3 0.085 12.7 7.8 2.6 2 1 0 2 2 2 0 CdvA-like coiled-coil domain Spc7 PF08317.11 gi|159042231|ref|YP_001541483.1| - 0.13 11.1 8.7 0.36 9.7 8.8 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein GLTSCR1 PF15249.6 gi|159042231|ref|YP_001541483.1| - 0.17 12.3 4.4 11 6.6 0.1 3.0 1 1 1 2 2 2 0 Conserved region of unknown function on GLTSCR protein ApoLp-III PF07464.11 gi|159042231|ref|YP_001541483.1| - 0.18 11.9 4.1 0.28 11.3 1.0 2.2 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) AAA_23 PF13476.6 gi|159042231|ref|YP_001541483.1| - 0.23 12.0 7.2 0.33 11.4 7.2 1.3 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.19 gi|159042231|ref|YP_001541483.1| - 0.23 9.3 3.2 0.29 9.0 3.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Sec2p PF06428.11 gi|159042231|ref|YP_001541483.1| - 0.23 11.4 8.6 0.5 10.4 1.3 2.6 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p DNA_repr_REX1B PF14966.6 gi|159042231|ref|YP_001541483.1| - 0.3 11.8 2.5 0.61 10.8 1.0 1.9 1 1 1 2 2 2 0 DNA repair REX1-B Baculo_p24 PF05073.12 gi|159042231|ref|YP_001541483.1| - 0.35 10.6 4.6 0.071 12.9 1.5 1.6 2 0 0 2 2 1 0 Baculovirus P24 capsid protein DUF1664 PF07889.12 gi|159042231|ref|YP_001541483.1| - 0.38 10.8 6.9 1.4 8.9 3.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|159042231|ref|YP_001541483.1| - 0.4 11.0 2.9 4.9 7.5 0.8 2.5 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DASH_Duo1 PF08651.10 gi|159042231|ref|YP_001541483.1| - 0.4 10.5 3.1 1.1 9.1 0.6 2.8 2 1 1 3 3 3 0 DASH complex subunit Duo1 BLOC1_2 PF10046.9 gi|159042231|ref|YP_001541483.1| - 0.44 10.9 8.6 0.13 12.5 3.0 2.7 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HalX PF08663.10 gi|159042231|ref|YP_001541483.1| - 0.6 10.5 9.2 1.4 9.3 0.0 3.3 2 1 1 3 3 3 0 HalX domain WD40_alt PF14077.6 gi|159042231|ref|YP_001541483.1| - 0.7 9.8 10.7 1.7 8.5 0.8 3.8 3 1 0 4 4 3 0 Alternative WD40 repeat motif ABC_tran_CTD PF16326.5 gi|159042231|ref|YP_001541483.1| - 0.82 10.0 8.1 3.7 7.9 4.8 2.7 2 1 0 2 2 2 0 ABC transporter C-terminal domain TMPIT PF07851.13 gi|159042231|ref|YP_001541483.1| - 1.2 8.3 5.8 1.9 7.6 4.5 1.9 1 1 1 2 2 2 0 TMPIT-like protein Spc24 PF08286.11 gi|159042231|ref|YP_001541483.1| - 1.5 9.1 8.0 1.5e+02 2.6 8.0 2.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 THOC7 PF05615.13 gi|159042231|ref|YP_001541483.1| - 1.7 8.9 9.2 18 5.6 0.2 2.9 2 1 0 2 2 2 0 Tho complex subunit 7 Ribosomal_L29 PF00831.23 gi|159042231|ref|YP_001541483.1| - 2.9 7.9 8.6 0.39 10.7 0.3 3.1 3 1 0 3 3 3 0 Ribosomal L29 protein SNAPc19 PF15497.6 gi|159042231|ref|YP_001541483.1| - 4 7.9 10.6 4.5 7.8 2.4 2.4 1 1 1 2 2 2 0 snRNA-activating protein complex subunit 19, SNAPc subunit 19 TSC22 PF01166.18 gi|159042231|ref|YP_001541483.1| - 7.2 7.0 8.6 1.1 9.7 0.6 3.3 3 1 0 3 3 3 0 TSC-22/dip/bun family YabA PF06156.13 gi|159042231|ref|YP_001541483.1| - 7.3 7.3 9.1 14 6.3 1.5 2.4 1 1 1 2 2 2 0 Initiation control protein YabA Peptidase_M16 PF00675.20 gi|159042232|ref|YP_001541484.1| - 2.8e-13 50.1 0.0 4.6e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|159042232|ref|YP_001541484.1| - 1.9e-11 44.3 0.0 5e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 Peptidase M16 inactive domain TetR_C_36 PF18598.1 gi|159042232|ref|YP_001541484.1| - 0.15 12.1 0.0 2.8 7.9 0.0 2.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peptidase_M16_C PF05193.21 gi|159042233|ref|YP_001541485.1| - 7.8e-08 32.5 0.0 1.2e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase M16 inactive domain Cation_efflux PF01545.21 gi|159042234|ref|YP_001541486.1| - 8e-27 94.3 17.3 9.7e-27 94.0 17.3 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|159042234|ref|YP_001541486.1| - 2.4e-15 56.4 0.2 4.5e-15 55.5 0.2 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter ACT_6 PF13740.6 gi|159042234|ref|YP_001541486.1| - 0.0077 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_5 PF13710.6 gi|159042234|ref|YP_001541486.1| - 0.042 13.7 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 ACT domain Bac_export_2 PF01312.19 gi|159042234|ref|YP_001541486.1| - 0.093 11.9 1.1 0.18 11.0 1.1 1.5 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family Endonuc_subdom PF09062.10 gi|159042234|ref|YP_001541486.1| - 0.096 13.5 0.0 0.23 12.3 0.0 1.6 1 0 0 1 1 1 0 PI-PfuI Endonuclease subdomain Ldh_1_N PF00056.23 gi|159042236|ref|YP_001541488.1| - 2.4e-39 134.6 0.1 3.5e-39 134.1 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|159042236|ref|YP_001541488.1| - 2.4e-21 76.4 0.0 4.4e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|159042236|ref|YP_001541488.1| - 0.00019 21.0 0.1 0.00052 19.6 0.1 1.6 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|159042236|ref|YP_001541488.1| - 0.0012 18.4 0.4 0.0033 17.0 0.4 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2785 PF10978.8 gi|159042236|ref|YP_001541488.1| - 0.039 13.7 0.0 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) Peptidase_M20 PF01546.28 gi|159042237|ref|YP_001541489.1| - 2.3e-21 76.5 0.0 3.6e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|159042237|ref|YP_001541489.1| - 4.9e-12 45.7 0.0 9.6e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|159042237|ref|YP_001541489.1| - 0.00069 19.4 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 ADH_zinc_N PF00107.26 gi|159042238|ref|YP_001541490.1| - 1e-19 70.8 0.0 1.8e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|159042238|ref|YP_001541490.1| - 6.8e-15 54.9 0.0 1.8e-14 53.5 0.0 1.7 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|159042238|ref|YP_001541490.1| - 0.00015 22.8 0.0 0.00043 21.3 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|159042238|ref|YP_001541490.1| - 0.00016 21.2 0.1 0.0011 18.5 0.1 2.0 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_2 PF16884.5 gi|159042238|ref|YP_001541490.1| - 0.086 12.7 0.1 0.67 9.9 0.1 2.2 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase Lactamase_B_2 PF12706.7 gi|159042239|ref|YP_001541491.1| - 2e-14 53.6 0.1 3e-12 46.5 0.1 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|159042239|ref|YP_001541491.1| - 2e-10 41.0 1.1 1e-07 32.2 0.5 2.5 3 0 0 3 3 3 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|159042239|ref|YP_001541491.1| - 0.011 15.4 0.0 0.03 14.0 0.0 1.7 2 0 0 2 2 2 0 tRNase Z endonuclease Glycoprotein_B PF00606.18 gi|159042239|ref|YP_001541491.1| - 0.034 13.6 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B ectodomain DUF1772 PF08592.11 gi|159042240|ref|YP_001541492.1| - 1.4 9.2 11.3 11 6.3 11.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Pribosyltran PF00156.27 gi|159042241|ref|YP_001541493.1| - 2.7e-17 62.8 0.0 4e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MarR PF01047.22 gi|159042241|ref|YP_001541493.1| - 0.0034 17.3 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 MarR family UPRTase PF14681.6 gi|159042241|ref|YP_001541493.1| - 0.039 13.4 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Dfp1_Him1_M PF08630.10 gi|159042241|ref|YP_001541493.1| - 0.057 13.6 1.0 0.13 12.5 0.6 1.7 2 0 0 2 2 2 0 Dfp1/Him1, central region DUF4194 PF13835.6 gi|159042241|ref|YP_001541493.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) MarR_2 PF12802.7 gi|159042241|ref|YP_001541493.1| - 0.19 11.6 0.0 0.61 10.0 0.0 1.8 2 0 0 2 2 2 0 MarR family OTCace_N PF02729.21 gi|159042242|ref|YP_001541494.1| - 6.7e-47 159.2 0.0 9.2e-47 158.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|159042242|ref|YP_001541494.1| - 1.6e-22 80.3 0.0 2.9e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF871 PF05913.11 gi|159042243|ref|YP_001541495.1| - 2.1e-75 254.2 0.0 2.5e-75 253.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) MetJ PF01340.20 gi|159042243|ref|YP_001541495.1| - 0.023 14.6 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Met Apo-repressor, MetJ Pyr_redox_2 PF07992.14 gi|159042244|ref|YP_001541496.1| - 7.7e-16 58.2 0.1 8.6e-11 41.6 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159042244|ref|YP_001541496.1| - 1.2e-07 32.2 2.7 0.0064 17.0 0.3 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|159042244|ref|YP_001541496.1| - 3.4e-05 23.6 1.3 0.00038 20.1 0.9 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|159042244|ref|YP_001541496.1| - 0.00011 22.3 0.1 0.0003 20.9 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|159042244|ref|YP_001541496.1| - 0.0039 16.1 0.2 0.0055 15.6 0.2 1.2 1 0 0 1 1 1 1 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|159042244|ref|YP_001541496.1| - 0.011 14.9 0.2 0.02 14.0 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.6 gi|159042244|ref|YP_001541496.1| - 0.025 14.6 0.0 0.061 13.3 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|159042244|ref|YP_001541496.1| - 0.29 10.4 2.4 0.25 10.6 0.4 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ADH_N PF08240.12 gi|159042245|ref|YP_001541497.1| - 1.4e-26 92.5 1.1 2.7e-26 91.6 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159042245|ref|YP_001541497.1| - 6.4e-21 74.7 0.7 2.5e-19 69.5 0.1 2.4 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|159042245|ref|YP_001541497.1| - 1.4e-10 42.3 0.0 3.2e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|159042245|ref|YP_001541497.1| - 0.093 12.4 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SIS_2 PF13580.6 gi|159042245|ref|YP_001541497.1| - 0.13 12.3 0.1 0.65 10.0 0.1 2.1 2 0 0 2 2 2 0 SIS domain Cyt_bd_oxida_I PF01654.17 gi|159042246|ref|YP_001541498.1| - 8.7e-19 67.4 13.5 8.7e-19 67.4 13.5 2.1 1 1 0 2 2 2 1 Cytochrome bd terminal oxidase subunit I Romo1 PF10247.9 gi|159042246|ref|YP_001541498.1| - 1.2 9.5 0.0 1.2 9.5 0.0 2.9 3 1 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 Cyt_bd_oxida_I PF01654.17 gi|159042247|ref|YP_001541499.1| - 1.4e-63 215.0 34.5 1.3e-62 211.8 34.5 1.9 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I HTH_3 PF01381.22 gi|159042248|ref|YP_001541500.1| - 9.7e-10 38.4 0.2 1.9e-09 37.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|159042248|ref|YP_001541500.1| - 7.6e-08 32.6 0.2 1.4e-07 31.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|159042248|ref|YP_001541500.1| - 8.1e-06 25.8 0.1 1.6e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|159042248|ref|YP_001541500.1| - 0.0093 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|159042248|ref|YP_001541500.1| - 0.045 13.9 0.3 0.41 10.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_25 PF13413.6 gi|159042248|ref|YP_001541500.1| - 0.11 12.4 0.2 0.22 11.4 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PGM_PMM_I PF02878.16 gi|159042249|ref|YP_001541501.1| - 3e-32 111.2 0.0 5.3e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|159042249|ref|YP_001541501.1| - 1.3e-22 80.4 0.0 3.1e-22 79.1 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|159042249|ref|YP_001541501.1| - 1.6e-18 66.9 0.0 3.1e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|159042249|ref|YP_001541501.1| - 5.8e-17 61.6 0.1 8.1e-16 58.0 0.1 2.5 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF996 PF06195.13 gi|159042250|ref|YP_001541502.1| - 1.7e-34 119.0 19.6 2.9e-34 118.2 19.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF996) Pox_A9 PF04835.12 gi|159042250|ref|YP_001541502.1| - 0.058 13.5 1.5 0.058 13.5 1.5 3.9 3 1 1 4 4 4 0 A9 protein conserved region DHHC PF01529.20 gi|159042250|ref|YP_001541502.1| - 0.71 10.0 15.9 0.49 10.5 5.9 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF308 PF03729.13 gi|159042250|ref|YP_001541502.1| - 1.7 9.0 39.0 0.077 13.3 13.2 3.7 2 2 0 2 2 2 0 Short repeat of unknown function (DUF308) TMEM154 PF15102.6 gi|159042250|ref|YP_001541502.1| - 2.2 8.2 0.0 2.2 8.2 0.0 3.6 2 2 2 4 4 4 0 TMEM154 protein family DUF973 PF06157.11 gi|159042250|ref|YP_001541502.1| - 2.9 6.8 31.1 12 4.8 31.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF973) PRIMA1 PF16101.5 gi|159042250|ref|YP_001541502.1| - 4.7 7.3 4.5 0.79 9.8 0.1 1.9 1 1 1 2 2 2 0 Proline-rich membrane anchor 1 Glycos_transf_2 PF00535.26 gi|159042251|ref|YP_001541503.1| - 7.8e-10 38.8 0.5 2.3e-09 37.3 0.5 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|159042251|ref|YP_001541503.1| - 0.0024 17.8 0.2 0.017 15.0 0.2 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 PaREP1 PF05942.11 gi|159042252|ref|YP_001541504.1| - 4.9e-07 29.7 0.0 5.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glyco_hydro_31 PF01055.26 gi|159042253|ref|YP_001541505.1| - 2.7e-138 461.9 0.0 3.4e-138 461.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|159042253|ref|YP_001541505.1| - 6.7e-20 71.2 0.1 1.5e-19 70.0 0.1 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like BTRD1 PF17660.1 gi|159042253|ref|YP_001541505.1| - 0.0071 16.1 0.2 0.019 14.8 0.2 1.7 1 0 0 1 1 1 1 Bacterial tandem repeat domain 1 GHL15 PF14885.6 gi|159042253|ref|YP_001541505.1| - 0.0071 16.3 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase family 15 DUF5110 PF17137.4 gi|159042253|ref|YP_001541505.1| - 0.059 13.6 0.1 0.2 11.9 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF5110) SNARE_assoc PF09335.11 gi|159042254|ref|YP_001541506.1| - 6.9e-22 78.2 8.7 6.9e-22 78.2 8.7 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein Peptidase_M48 PF01435.18 gi|159042255|ref|YP_001541507.1| - 1.7e-23 83.4 0.1 1.7e-23 83.4 0.1 1.8 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|159042255|ref|YP_001541507.1| - 0.00025 20.4 0.4 0.00025 20.4 0.4 1.9 1 1 0 2 2 2 1 BlaR1 peptidase M56 DUF1761 PF08570.10 gi|159042255|ref|YP_001541507.1| - 0.2 11.9 5.6 0.14 12.5 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1761) SprT-like PF10263.9 gi|159042255|ref|YP_001541507.1| - 0.24 11.3 0.3 0.46 10.3 0.3 1.4 1 0 0 1 1 1 0 SprT-like family Trp_halogenase PF04820.14 gi|159042257|ref|YP_001541509.1| - 5.1e-13 48.7 0.1 7.9e-07 28.3 0.0 2.5 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|159042257|ref|YP_001541509.1| - 7.3e-12 45.2 3.0 6.4e-11 42.1 0.4 2.7 2 1 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|159042257|ref|YP_001541509.1| - 1.6e-10 40.7 0.4 5.9e-06 25.6 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|159042257|ref|YP_001541509.1| - 6.3e-10 39.0 2.1 2.8e-05 23.7 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|159042257|ref|YP_001541509.1| - 3.5e-09 36.7 1.8 0.00025 20.7 0.3 2.6 1 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|159042257|ref|YP_001541509.1| - 1e-05 25.7 0.5 2.8e-05 24.2 0.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|159042257|ref|YP_001541509.1| - 1.4e-05 24.5 0.1 2.9e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|159042257|ref|YP_001541509.1| - 2.8e-05 23.4 0.3 5.1e-05 22.5 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|159042257|ref|YP_001541509.1| - 0.00024 19.9 0.2 0.00045 19.0 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|159042257|ref|YP_001541509.1| - 0.00044 19.6 1.7 0.00053 19.3 0.3 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|159042257|ref|YP_001541509.1| - 0.00052 19.7 0.1 0.00099 18.8 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GMC_oxred_N PF00732.19 gi|159042257|ref|YP_001541509.1| - 0.00073 19.0 0.2 0.049 13.0 0.0 2.1 2 0 0 2 2 2 1 GMC oxidoreductase 3HCDH_N PF02737.18 gi|159042257|ref|YP_001541509.1| - 0.0013 18.6 0.1 0.0022 17.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|159042257|ref|YP_001541509.1| - 0.0035 16.4 0.9 0.12 11.4 0.1 2.6 3 0 0 3 3 3 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|159042257|ref|YP_001541509.1| - 0.0052 17.3 0.3 0.016 15.7 0.2 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|159042257|ref|YP_001541509.1| - 0.075 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox_3 PF13738.6 gi|159042257|ref|YP_001541509.1| - 0.094 11.9 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|159042257|ref|YP_001541509.1| - 0.23 10.8 0.7 1.6 8.0 0.1 2.3 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldolase_II PF00596.21 gi|159042258|ref|YP_001541510.1| - 1.4e-38 132.7 0.0 1.5e-38 132.6 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HTH_5 PF01022.20 gi|159042260|ref|YP_001541512.1| - 4.5e-09 36.0 0.0 7.5e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|159042260|ref|YP_001541512.1| - 3e-08 33.6 0.0 4.7e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|159042260|ref|YP_001541512.1| - 9.4e-06 25.5 0.0 2.1e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|159042260|ref|YP_001541512.1| - 7.7e-05 22.2 0.1 0.00015 21.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|159042260|ref|YP_001541512.1| - 0.00031 20.6 0.0 0.0005 19.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|159042260|ref|YP_001541512.1| - 0.00047 20.1 1.4 0.0014 18.5 0.0 2.1 3 0 0 3 3 2 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|159042260|ref|YP_001541512.1| - 0.0017 18.3 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MarR PF01047.22 gi|159042260|ref|YP_001541512.1| - 0.0021 18.0 0.0 0.0048 16.8 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|159042260|ref|YP_001541512.1| - 0.0034 17.8 0.0 0.006 17.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|159042260|ref|YP_001541512.1| - 0.0051 16.9 0.0 0.0096 16.1 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|159042260|ref|YP_001541512.1| - 0.0065 16.4 0.0 0.0093 15.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|159042260|ref|YP_001541512.1| - 0.033 14.1 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|159042260|ref|YP_001541512.1| - 0.066 12.9 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|159042260|ref|YP_001541512.1| - 0.08 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|159042260|ref|YP_001541512.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|159042260|ref|YP_001541512.1| - 0.18 12.0 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain DUF1116 PF06545.11 gi|159042261|ref|YP_001541513.1| - 0.09 12.2 0.0 0.09 12.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1116) DFP PF04127.15 gi|159042262|ref|YP_001541514.1| - 1.3e-45 155.5 0.2 2.4e-45 154.6 0.2 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|159042262|ref|YP_001541514.1| - 1.3e-34 119.3 0.3 2.5e-34 118.3 0.3 1.5 1 0 0 1 1 1 1 Flavoprotein Na_H_Exchanger PF00999.21 gi|159042263|ref|YP_001541515.1| - 4.7e-25 88.2 56.1 5.5e-25 87.9 56.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF35_N PF12172.8 gi|159042264|ref|YP_001541516.1| - 0.00023 21.0 3.0 0.02 14.8 0.6 2.2 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|159042264|ref|YP_001541516.1| - 0.0012 18.7 3.8 0.19 11.6 0.0 2.3 2 0 0 2 2 2 2 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|159042264|ref|YP_001541516.1| - 0.0022 18.0 1.4 1.2 9.3 0.5 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|159042264|ref|YP_001541516.1| - 0.0084 15.5 4.2 0.17 11.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-CHCC PF10276.9 gi|159042264|ref|YP_001541516.1| - 0.018 15.1 2.6 0.066 13.3 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-BED PF02892.15 gi|159042264|ref|YP_001541516.1| - 0.03 14.3 2.1 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger TF_Zn_Ribbon PF08271.12 gi|159042264|ref|YP_001541516.1| - 0.037 13.5 2.1 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.6 gi|159042264|ref|YP_001541516.1| - 0.04 14.4 1.9 1.2 9.7 0.7 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain CTC1_2 PF15491.6 gi|159042264|ref|YP_001541516.1| - 0.068 12.5 0.2 0.069 12.4 0.2 1.1 1 0 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 Sgf11 PF08209.11 gi|159042264|ref|YP_001541516.1| - 0.085 12.4 6.5 0.66 9.6 2.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF4507 PF14964.6 gi|159042264|ref|YP_001541516.1| - 0.13 11.1 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4507) zinc_ribbon_2 PF13240.6 gi|159042264|ref|YP_001541516.1| - 0.2 11.4 4.9 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|159042264|ref|YP_001541516.1| - 0.34 11.4 6.0 8.8 7.0 3.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.7 gi|159042264|ref|YP_001541516.1| - 0.45 10.5 4.6 2 8.5 4.5 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|159042264|ref|YP_001541516.1| - 4.8 7.5 8.9 10 6.4 0.8 2.6 2 1 0 2 2 2 0 C4-type zinc ribbon domain CBFD_NFYB_HMF PF00808.23 gi|159042265|ref|YP_001541517.1| - 2e-14 53.6 0.1 2.4e-14 53.4 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|159042265|ref|YP_001541517.1| - 5e-06 26.9 0.0 5.7e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|159042265|ref|YP_001541517.1| - 6.2e-06 26.3 0.0 6.3e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|159042265|ref|YP_001541517.1| - 1.7e-05 25.1 0.1 2e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|159042265|ref|YP_001541517.1| - 0.0008 19.5 0.0 0.00093 19.3 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit DUF1931 PF09123.11 gi|159042265|ref|YP_001541517.1| - 0.014 15.5 0.2 0.015 15.4 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) LepA_C PF06421.12 gi|159042265|ref|YP_001541517.1| - 0.03 14.5 0.1 0.034 14.3 0.1 1.1 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus TFIID-18kDa PF02269.16 gi|159042265|ref|YP_001541517.1| - 0.061 13.4 0.1 0.07 13.2 0.1 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Methyltransf_31 PF13847.6 gi|159042266|ref|YP_001541518.1| - 0.0024 17.7 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|159042266|ref|YP_001541518.1| - 0.0039 17.9 0.0 0.005 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|159042266|ref|YP_001541518.1| - 0.0066 16.0 0.0 0.44 10.0 0.0 2.1 2 0 0 2 2 2 2 Histone methylation protein DOT1 RrnaAD PF00398.20 gi|159042266|ref|YP_001541518.1| - 0.011 14.8 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|159042266|ref|YP_001541518.1| - 0.02 14.2 0.0 0.024 13.9 0.0 1.0 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase ERCC4 PF02732.15 gi|159042267|ref|YP_001541519.1| - 5.4e-20 72.2 0.0 7.4e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|159042267|ref|YP_001541519.1| - 0.088 13.4 0.1 0.35 11.5 0.1 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix domain AA_permease_2 PF13520.6 gi|159042269|ref|YP_001541521.1| - 3.3e-12 46.0 62.2 4.9e-12 45.4 62.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|159042269|ref|YP_001541521.1| - 5.2e-10 38.5 64.2 1.1e-09 37.4 64.2 1.5 1 1 0 1 1 1 1 Amino acid permease DUF3930 PF13067.6 gi|159042269|ref|YP_001541521.1| - 0.47 10.7 5.2 0.18 12.1 0.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) Ribosomal_60s PF00428.19 gi|159042270|ref|YP_001541522.1| - 1.5e-17 63.9 17.7 2.1e-17 63.5 17.7 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF3391 PF11871.8 gi|159042270|ref|YP_001541522.1| - 0.054 14.0 4.6 0.068 13.7 4.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) DUF3323 PF11796.8 gi|159042270|ref|YP_001541522.1| - 0.067 13.1 3.2 0.96 9.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function N-terminus (DUF3323) HA2 PF04408.23 gi|159042270|ref|YP_001541522.1| - 0.071 13.4 1.8 0.095 13.0 1.8 1.2 1 0 0 1 1 1 0 Helicase associated domain (HA2) PepSY_2 PF13670.6 gi|159042270|ref|YP_001541522.1| - 1 9.4 11.0 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain POR PF01558.18 gi|159042271|ref|YP_001541523.1| - 9e-25 87.8 0.0 2.1e-24 86.6 0.0 1.5 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|159042272|ref|YP_001541524.1| - 2.9e-16 58.5 18.1 6.5e-09 35.2 6.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159042272|ref|YP_001541524.1| - 5.6e-11 42.4 9.4 7e-11 42.1 9.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159042272|ref|YP_001541524.1| - 6.1e-11 41.9 14.8 2.9e-06 27.1 5.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|159042272|ref|YP_001541524.1| - 3.9e-10 40.2 9.4 7.1e-10 39.3 9.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159042272|ref|YP_001541524.1| - 1e-09 39.2 7.5 3.9e-05 24.5 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|159042272|ref|YP_001541524.1| - 4.9e-09 35.8 12.4 6.2e-05 22.8 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159042272|ref|YP_001541524.1| - 5.3e-09 36.1 21.6 8.3e-06 25.8 11.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|159042272|ref|YP_001541524.1| - 5.7e-08 32.8 9.1 1.5e-07 31.5 9.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|159042272|ref|YP_001541524.1| - 9.3e-08 32.4 3.2 0.007 16.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159042272|ref|YP_001541524.1| - 1.3e-06 28.9 4.3 0.01 16.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159042272|ref|YP_001541524.1| - 5.3e-05 23.4 10.9 0.029 14.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|159042272|ref|YP_001541524.1| - 0.00014 22.4 11.1 0.0064 17.0 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|159042272|ref|YP_001541524.1| - 0.00014 22.5 13.3 0.17 12.7 4.7 2.9 2 1 1 3 3 3 3 4Fe-4S single cluster domain DUF5412 PF17428.2 gi|159042272|ref|YP_001541524.1| - 0.0025 17.6 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5412) Fer4_22 PF17179.4 gi|159042272|ref|YP_001541524.1| - 0.042 14.7 11.0 0.077 13.8 1.4 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|159042272|ref|YP_001541524.1| - 0.09 13.8 6.0 0.09 13.8 6.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|159042272|ref|YP_001541524.1| - 3.3 7.9 10.8 8.4 6.6 2.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|159042273|ref|YP_001541525.1| - 1.1e-63 215.1 0.1 1.4e-63 214.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|159042273|ref|YP_001541525.1| - 6.4e-26 90.6 0.1 5.2e-25 87.7 0.0 2.5 1 1 1 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|159042273|ref|YP_001541525.1| - 0.00063 19.6 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|159042273|ref|YP_001541525.1| - 0.024 14.2 0.4 0.033 13.8 0.4 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|159042274|ref|YP_001541526.1| - 2.7e-20 72.7 0.1 3.7e-20 72.3 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|159042274|ref|YP_001541526.1| - 2.5e-05 23.6 0.0 3.5e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|159042274|ref|YP_001541526.1| - 0.019 13.9 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Glyco_transf_4 PF13439.6 gi|159042274|ref|YP_001541526.1| - 0.055 13.5 0.1 3.9 7.4 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glu_dehyd_C PF16912.5 gi|159042275|ref|YP_001541527.1| - 6.7e-28 97.6 0.0 9.7e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|159042275|ref|YP_001541527.1| - 5.3e-18 64.9 0.0 1.1e-17 63.9 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159042275|ref|YP_001541527.1| - 4.7e-06 26.6 0.0 7.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DHH PF01368.20 gi|159042276|ref|YP_001541528.1| - 1.8e-13 50.6 0.0 3.6e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|159042276|ref|YP_001541528.1| - 8.6e-09 35.9 0.1 1.6e-08 35.1 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain phiKZ_IP PF12699.7 gi|159042277|ref|YP_001541529.1| - 0.00045 19.5 2.3 0.00052 19.3 2.3 1.0 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins HEPN_RiboL-PSP PF18735.1 gi|159042277|ref|YP_001541529.1| - 0.01 15.7 1.5 0.013 15.5 1.5 1.1 1 0 0 1 1 1 0 RiboL-PSP-HEPN ANTH PF07651.16 gi|159042277|ref|YP_001541529.1| - 0.018 14.0 0.1 0.023 13.7 0.1 1.1 1 0 0 1 1 1 0 ANTH domain SPO22 PF08631.10 gi|159042277|ref|YP_001541529.1| - 0.078 12.4 0.7 0.22 11.0 0.7 1.6 1 1 1 2 2 2 0 Meiosis protein SPO22/ZIP4 like MethyltransfD12 PF02086.15 gi|159042278|ref|YP_001541530.1| - 0.0062 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase ParA PF10609.9 gi|159042279|ref|YP_001541531.1| - 4.3e-88 294.9 0.0 5e-88 294.7 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|159042279|ref|YP_001541531.1| - 2e-12 47.3 0.0 1.1e-11 44.9 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|159042279|ref|YP_001541531.1| - 2.7e-05 24.2 1.0 0.00011 22.2 0.3 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|159042279|ref|YP_001541531.1| - 0.00067 18.9 1.4 0.00067 18.9 1.4 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|159042279|ref|YP_001541531.1| - 0.0011 18.3 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|159042279|ref|YP_001541531.1| - 0.014 15.2 0.4 6 6.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|159042279|ref|YP_001541531.1| - 0.019 14.0 0.2 0.029 13.3 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|159042279|ref|YP_001541531.1| - 0.14 11.6 0.1 0.42 10.0 0.2 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|159042279|ref|YP_001541531.1| - 0.21 11.1 0.1 0.53 9.8 0.1 1.6 2 0 0 2 2 2 0 AAA domain ADH_N PF08240.12 gi|159042280|ref|YP_001541532.1| - 4.2e-33 113.5 0.8 4.2e-33 113.5 0.8 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159042280|ref|YP_001541532.1| - 1.5e-32 112.3 0.2 2.5e-32 111.6 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|159042280|ref|YP_001541532.1| - 4.8e-18 66.5 0.3 8.8e-18 65.6 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|159042280|ref|YP_001541532.1| - 1.6e-06 27.8 0.7 2.3e-06 27.3 0.7 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|159042280|ref|YP_001541532.1| - 0.0058 16.0 0.4 0.011 15.0 0.4 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|159042280|ref|YP_001541532.1| - 0.015 14.6 0.1 0.025 13.9 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_10 PF04967.12 gi|159042281|ref|YP_001541533.1| - 5.8e-19 67.7 0.1 1.1e-18 66.7 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|159042281|ref|YP_001541533.1| - 0.008 15.7 0.5 0.095 12.3 0.5 2.6 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|159042281|ref|YP_001541533.1| - 0.048 13.6 0.1 0.15 12.0 0.1 1.9 1 0 0 1 1 1 0 HTH domain Mga PF05043.13 gi|159042281|ref|YP_001541533.1| - 0.057 14.0 0.1 0.16 12.6 0.1 1.8 1 0 0 1 1 1 0 Mga helix-turn-helix domain MarR PF01047.22 gi|159042281|ref|YP_001541533.1| - 0.074 13.0 1.0 0.17 11.8 0.2 2.1 2 1 0 2 2 2 0 MarR family PuR_N PF09182.10 gi|159042281|ref|YP_001541533.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal Glyco_hydro_43 PF04616.14 gi|159042282|ref|YP_001541534.1| - 0.0092 15.3 0.0 0.023 14.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 DUF4493 PF14900.6 gi|159042283|ref|YP_001541535.1| - 0.00085 19.3 0.2 0.0012 18.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4493) DUF87 PF01935.17 gi|159042284|ref|YP_001541536.1| - 9.8e-36 124.0 0.0 1.4e-35 123.5 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|159042284|ref|YP_001541536.1| - 0.00016 20.7 0.0 0.002 17.1 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|159042284|ref|YP_001541536.1| - 0.012 15.9 0.0 6.2 7.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|159042284|ref|YP_001541536.1| - 0.014 15.8 0.1 0.7 10.3 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.12 gi|159042284|ref|YP_001541536.1| - 0.016 13.8 0.0 4 5.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|159042284|ref|YP_001541536.1| - 0.036 14.2 0.5 0.16 12.1 0.4 2.1 2 0 0 2 2 2 0 HAS barrel domain FtsK_SpoIIIE PF01580.18 gi|159042284|ref|YP_001541536.1| - 0.06 12.7 0.1 0.66 9.3 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zot PF05707.12 gi|159042284|ref|YP_001541536.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) ResIII PF04851.15 gi|159042284|ref|YP_001541536.1| - 0.2 11.6 0.0 2.4 8.1 0.0 2.4 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit TGT PF01702.18 gi|159042285|ref|YP_001541537.1| - 0.024 13.8 0.0 0.36 9.9 0.0 2.0 1 1 0 1 1 1 0 Queuine tRNA-ribosyltransferase NTP_transf_3 PF12804.7 gi|159042286|ref|YP_001541538.1| - 9e-17 61.9 0.0 1.4e-16 61.2 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|159042286|ref|YP_001541538.1| - 0.00034 20.3 0.0 0.00069 19.3 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|159042286|ref|YP_001541538.1| - 0.001 19.0 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NeuB PF03102.14 gi|159042286|ref|YP_001541538.1| - 0.019 14.4 0.0 0.024 14.1 0.0 1.1 1 0 0 1 1 1 0 NeuB family DUF43 PF01861.16 gi|159042286|ref|YP_001541538.1| - 0.058 12.6 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Thioredoxin_2 PF13098.6 gi|159042287|ref|YP_001541539.1| - 1.8e-10 41.2 0.0 2.5e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.15 gi|159042287|ref|YP_001541539.1| - 7.8e-10 39.0 25.9 1.6e-09 38.0 19.1 2.3 1 1 1 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|159042287|ref|YP_001541539.1| - 0.00015 21.8 14.2 0.00015 21.8 14.2 2.4 2 1 1 3 3 3 2 Cytochrome C biogenesis protein transmembrane region Thioredoxin_7 PF13899.6 gi|159042287|ref|YP_001541539.1| - 0.0025 17.9 0.0 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_4 PF13462.6 gi|159042287|ref|YP_001541539.1| - 0.0077 16.4 0.2 0.023 14.9 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredox_DsbH PF03190.15 gi|159042287|ref|YP_001541539.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF255 DUF371 PF04027.13 gi|159042288|ref|YP_001541540.1| - 1.1e-45 154.8 0.4 1.3e-45 154.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Polysacc_deac_3 PF15421.6 gi|159042289|ref|YP_001541541.1| - 0.051 12.1 0.2 0.066 11.7 0.2 1.0 1 0 0 1 1 1 0 Putative polysaccharide deacetylase RNase_HII PF01351.18 gi|159042290|ref|YP_001541542.1| - 1.5e-39 135.9 0.0 1.8e-39 135.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII HTH_17 PF12728.7 gi|159042290|ref|YP_001541542.1| - 0.058 13.6 0.5 1.3 9.3 0.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain GlutR_N PF05201.15 gi|159042291|ref|YP_001541543.1| - 6.1e-31 107.2 0.0 1.1e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|159042291|ref|YP_001541543.1| - 3e-27 95.4 0.1 6.2e-27 94.4 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|159042291|ref|YP_001541543.1| - 2.2e-10 41.0 0.1 5.3e-10 39.8 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|159042291|ref|YP_001541543.1| - 3.2e-07 29.9 0.0 7.6e-07 28.7 0.0 1.6 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|159042291|ref|YP_001541543.1| - 1e-05 25.8 0.0 2.7e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|159042291|ref|YP_001541543.1| - 2.3e-05 24.7 0.4 9.7e-05 22.6 0.1 2.2 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GlutR_dimer PF00745.20 gi|159042291|ref|YP_001541543.1| - 7.6e-05 23.1 0.1 0.00017 21.9 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain ThiF PF00899.21 gi|159042291|ref|YP_001541543.1| - 0.0011 18.4 0.1 0.0019 17.6 0.1 1.3 1 0 0 1 1 1 1 ThiF family NAD_binding_10 PF13460.6 gi|159042291|ref|YP_001541543.1| - 0.0014 18.5 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding IlvN PF07991.12 gi|159042291|ref|YP_001541543.1| - 0.0016 18.0 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|159042291|ref|YP_001541543.1| - 0.0021 18.3 0.1 0.0052 17.0 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|159042291|ref|YP_001541543.1| - 0.0028 17.3 0.6 0.0082 15.8 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|159042291|ref|YP_001541543.1| - 0.0053 16.7 0.1 0.012 15.5 0.0 1.7 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|159042291|ref|YP_001541543.1| - 0.011 14.7 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.22 gi|159042291|ref|YP_001541543.1| - 0.012 16.4 0.0 0.03 15.1 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|159042291|ref|YP_001541543.1| - 0.018 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_7 PF13241.6 gi|159042291|ref|YP_001541543.1| - 0.023 15.2 0.0 0.056 13.9 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 gi|159042291|ref|YP_001541543.1| - 0.026 14.0 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.13 gi|159042291|ref|YP_001541543.1| - 0.033 13.8 0.1 0.098 12.2 0.1 1.7 1 1 0 1 1 1 0 NmrA-like family NAD_binding_3 PF03447.16 gi|159042291|ref|YP_001541543.1| - 0.057 14.1 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|159042291|ref|YP_001541543.1| - 0.058 12.7 0.1 0.17 11.2 0.1 1.9 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KR PF08659.10 gi|159042291|ref|YP_001541543.1| - 0.06 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 KR domain DAO PF01266.24 gi|159042291|ref|YP_001541543.1| - 0.097 12.2 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|159042292|ref|YP_001541544.1| - 6e-20 71.6 0.0 2.1e-19 69.9 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|159042292|ref|YP_001541544.1| - 0.00042 20.8 0.1 0.0013 19.3 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase V_ATPase_I_N PF18670.1 gi|159042292|ref|YP_001541544.1| - 0.00053 20.3 0.0 0.001 19.4 0.0 1.5 1 0 0 1 1 1 1 V-type ATPase subunit I, N-terminal domain Pyr_redox_2 PF07992.14 gi|159042292|ref|YP_001541544.1| - 0.00075 18.8 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|159042292|ref|YP_001541544.1| - 0.0015 17.7 0.1 0.0023 17.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|159042292|ref|YP_001541544.1| - 0.0098 15.5 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Spermine_synth PF01564.17 gi|159042292|ref|YP_001541544.1| - 0.011 15.1 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Pyr_redox_3 PF13738.6 gi|159042292|ref|YP_001541544.1| - 0.013 14.8 0.0 0.031 13.5 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|159042292|ref|YP_001541544.1| - 0.017 14.8 0.0 0.084 12.4 0.1 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|159042292|ref|YP_001541544.1| - 0.033 13.5 0.0 0.056 12.7 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|159042292|ref|YP_001541544.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GIDA PF01134.22 gi|159042292|ref|YP_001541544.1| - 0.14 11.2 0.2 0.23 10.5 0.2 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A SP_C-Propep PF08999.10 gi|159042294|ref|YP_001541546.1| - 0.13 12.0 1.0 0.24 11.2 0.8 1.5 1 1 0 1 1 1 0 Surfactant protein C, N terminal propeptide MoCF_biosynth PF00994.24 gi|159042295|ref|YP_001541547.1| - 3.6e-30 104.5 0.1 4.3e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF2124 PF09897.9 gi|159042295|ref|YP_001541547.1| - 0.021 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) DUF3800 PF12686.7 gi|159042295|ref|YP_001541547.1| - 0.15 12.7 0.0 0.22 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) XhlA PF10779.9 gi|159042297|ref|YP_001541549.1| - 0.24 11.7 0.3 0.24 11.7 0.3 1.6 2 0 0 2 2 2 0 Haemolysin XhlA DUF5097 PF17020.5 gi|159042298|ref|YP_001541550.1| - 0.014 15.7 0.4 0.033 14.5 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5097) Iso_dh PF00180.20 gi|159042299|ref|YP_001541551.1| - 1.1e-98 330.7 0.0 1.2e-98 330.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Exo_endo_phos PF03372.23 gi|159042300|ref|YP_001541552.1| - 1e-14 54.6 0.4 2.7e-14 53.2 0.4 1.7 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|159042300|ref|YP_001541552.1| - 7.1e-07 29.1 0.0 1.7e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase HNOBA PF07701.14 gi|159042300|ref|YP_001541552.1| - 0.042 13.3 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 Heme NO binding associated ALAD PF00490.21 gi|159042301|ref|YP_001541553.1| - 1e-142 475.0 0.1 1.1e-142 474.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF2430 PF10353.9 gi|159042301|ref|YP_001541553.1| - 0.14 12.6 0.1 0.29 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2430) Metallophos PF00149.28 gi|159042302|ref|YP_001541554.1| - 4.1e-28 99.3 0.7 5.6e-28 98.8 0.7 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|159042302|ref|YP_001541554.1| - 0.00051 20.3 0.0 0.0009 19.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SPECT1 PF18680.1 gi|159042302|ref|YP_001541554.1| - 0.02 14.6 0.1 0.034 13.8 0.1 1.3 1 0 0 1 1 1 0 Plasmodium host cell traversal SPECT1 Proteasome PF00227.26 gi|159042303|ref|YP_001541555.1| - 1.4e-58 197.6 0.1 2.4e-58 196.7 0.1 1.4 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|159042303|ref|YP_001541555.1| - 8.5e-10 38.1 0.1 8.5e-10 38.1 0.1 2.6 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Mucin PF01456.17 gi|159042304|ref|YP_001541556.1| - 0.25 11.3 22.1 1.5 8.8 22.1 2.3 1 1 0 1 1 1 0 Mucin-like glycoprotein AJAP1_PANP_C PF15298.6 gi|159042304|ref|YP_001541556.1| - 5.4 7.2 22.5 10 6.3 22.5 1.5 1 0 0 1 1 1 0 AJAP1/PANP C-terminus Aldo_ket_red PF00248.21 gi|159042305|ref|YP_001541557.1| - 1.5e-69 234.5 0.0 1.7e-69 234.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GTP_EFTU PF00009.27 gi|159042306|ref|YP_001541558.1| - 4.7e-53 179.6 0.0 5.8e-53 179.3 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|159042306|ref|YP_001541558.1| - 3.1e-35 120.8 0.1 9.2e-35 119.3 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|159042306|ref|YP_001541558.1| - 1.4e-17 63.8 4.5 4.3e-17 62.3 3.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|159042306|ref|YP_001541558.1| - 1.4e-07 31.3 1.3 3.9e-07 29.9 1.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|159042306|ref|YP_001541558.1| - 1.2e-05 25.4 0.0 3.8e-05 23.8 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|159042306|ref|YP_001541558.1| - 0.0082 15.7 0.3 0.31 10.6 0.2 3.0 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|159042306|ref|YP_001541558.1| - 0.017 15.0 0.0 0.22 11.4 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase Glycos_transf_1 PF00534.20 gi|159042307|ref|YP_001541559.1| - 4.4e-19 68.7 0.1 6.2e-19 68.2 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|159042307|ref|YP_001541559.1| - 1.9e-09 38.1 0.0 2.6e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|159042307|ref|YP_001541559.1| - 0.023 14.7 0.0 0.051 13.6 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 tRNA_int_endo PF01974.17 gi|159042308|ref|YP_001541560.1| - 8.6e-06 25.7 0.0 2.1e-05 24.5 0.0 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|159042308|ref|YP_001541560.1| - 0.0026 17.4 0.0 0.0064 16.1 0.0 1.8 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain STAS PF01740.21 gi|159042309|ref|YP_001541561.1| - 0.083 12.5 0.0 0.8 9.4 0.0 2.1 1 1 1 2 2 2 0 STAS domain STAS_2 PF13466.6 gi|159042309|ref|YP_001541561.1| - 0.16 12.3 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 STAS domain Ribosomal_S8 PF00410.19 gi|159042310|ref|YP_001541562.1| - 1.9e-24 86.0 0.1 2.6e-24 85.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Zn-ribbon_8 PF09723.10 gi|159042311|ref|YP_001541563.1| - 0.069 13.3 0.0 0.34 11.1 0.0 1.9 2 0 0 2 2 2 0 Zinc ribbon domain DUF4519 PF15012.6 gi|159042311|ref|YP_001541563.1| - 0.42 10.8 4.1 0.76 10.0 4.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) DUF1512 PF07431.12 gi|159042312|ref|YP_001541564.1| - 2.5e-128 428.0 0.0 3e-128 427.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Alba PF01918.21 gi|159042312|ref|YP_001541564.1| - 0.04 13.7 0.4 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Alba Pico_P2B PF01552.17 gi|159042312|ref|YP_001541564.1| - 0.084 13.0 0.3 0.29 11.3 0.1 2.0 2 0 0 2 2 2 0 Picornavirus 2B protein DUF3829 PF12889.7 gi|159042312|ref|YP_001541564.1| - 0.15 11.5 1.5 8.1 5.8 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3829) Fib_alpha PF08702.10 gi|159042312|ref|YP_001541564.1| - 0.23 11.6 1.2 0.53 10.5 0.7 1.7 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Fe_dep_repr_C PF02742.15 gi|159042313|ref|YP_001541565.1| - 2.5e-21 75.5 0.2 7e-20 70.9 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|159042313|ref|YP_001541565.1| - 4.5e-05 23.6 0.3 0.0001 22.5 0.3 1.7 2 0 0 2 2 2 1 FeoA domain Fe_dep_repress PF01325.19 gi|159042313|ref|YP_001541565.1| - 0.0015 18.7 0.0 0.0078 16.4 0.0 2.0 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|159042313|ref|YP_001541565.1| - 0.0016 18.2 0.0 0.0033 17.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|159042313|ref|YP_001541565.1| - 0.0028 17.6 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PGP_phosphatase PF09419.10 gi|159042313|ref|YP_001541565.1| - 0.051 13.2 0.0 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase HTH_45 PF14947.6 gi|159042313|ref|YP_001541565.1| - 0.061 13.3 0.0 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|159042313|ref|YP_001541565.1| - 0.081 12.5 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HHH_4 PF14490.6 gi|159042313|ref|YP_001541565.1| - 0.082 12.9 0.0 0.84 9.7 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain HTH_11 PF08279.12 gi|159042313|ref|YP_001541565.1| - 0.11 12.5 0.0 0.45 10.5 0.0 2.2 2 1 0 2 2 1 0 HTH domain HTH_27 PF13463.6 gi|159042313|ref|YP_001541565.1| - 0.13 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Topoisom_bac PF01131.20 gi|159042313|ref|YP_001541565.1| - 0.14 11.1 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase CLTH PF10607.9 gi|159042314|ref|YP_001541566.1| - 0.074 12.9 0.2 1.2 9.0 0.1 2.0 1 1 1 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain Ribosomal_L10 PF00466.20 gi|159042315|ref|YP_001541567.1| - 4.5e-24 84.5 0.0 7.2e-24 83.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|159042315|ref|YP_001541567.1| - 7.3e-20 70.8 0.0 1.4e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P DUF5395 PF17373.2 gi|159042315|ref|YP_001541567.1| - 0.036 14.7 0.1 7.7 7.2 0.0 2.7 2 1 1 3 3 3 0 Family of unknown function (DUF5395) Ribosomal_S3Ae PF01015.18 gi|159042316|ref|YP_001541568.1| - 2.1e-57 194.0 0.3 2.4e-57 193.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Arcadin_1 PF18653.1 gi|159042317|ref|YP_001541569.1| - 5.6e-29 100.4 0.1 6.2e-29 100.3 0.1 1.0 1 0 0 1 1 1 1 Arcadin 1 adh_short_C2 PF13561.6 gi|159042318|ref|YP_001541570.1| - 3.7e-67 226.3 0.0 4.8e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159042318|ref|YP_001541570.1| - 1.9e-53 180.8 0.1 2.6e-53 180.4 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159042318|ref|YP_001541570.1| - 3.7e-09 36.8 0.1 6.1e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|159042318|ref|YP_001541570.1| - 0.055 12.9 0.1 0.1 12.0 0.1 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family ILVD_EDD PF00920.21 gi|159042319|ref|YP_001541571.1| - 8.9e-206 684.5 0.1 1e-205 684.3 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family MazE_antitoxin PF04014.18 gi|159042319|ref|YP_001541571.1| - 0.02 14.8 4.2 5.2 7.1 1.1 3.1 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Acetyltransf_9 PF13527.7 gi|159042322|ref|YP_001541574.1| - 3.3e-15 56.3 0.1 5.6e-15 55.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|159042322|ref|YP_001541574.1| - 3e-05 24.3 0.1 5.7e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|159042322|ref|YP_001541574.1| - 7.4e-05 22.3 0.1 0.00053 19.5 0.1 2.1 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_10 PF13673.7 gi|159042322|ref|YP_001541574.1| - 0.0013 18.7 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|159042322|ref|YP_001541574.1| - 0.002 18.3 0.1 0.0038 17.4 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|159042322|ref|YP_001541574.1| - 0.0027 17.7 0.1 0.0059 16.6 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein MFS_1 PF07690.16 gi|159042323|ref|YP_001541575.1| - 1.4e-42 145.9 56.5 1.4e-42 145.9 56.5 2.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159042323|ref|YP_001541575.1| - 8.4e-06 24.9 20.8 8.4e-06 24.9 20.8 2.6 2 1 1 3 3 3 1 Sugar (and other) transporter AAA_assoc_C PF09821.9 gi|159042325|ref|YP_001541577.1| - 4.1e-05 24.1 0.0 6.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_45 PF14947.6 gi|159042325|ref|YP_001541577.1| - 0.12 12.4 0.3 6.9 6.7 0.3 2.8 2 1 0 2 2 2 0 Winged helix-turn-helix NMD3 PF04981.13 gi|159042326|ref|YP_001541578.1| - 1.9e-38 132.3 0.2 2.5e-38 131.9 0.2 1.2 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|159042326|ref|YP_001541578.1| - 0.01 15.8 3.1 10 6.3 2.7 3.0 2 1 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|159042326|ref|YP_001541578.1| - 0.082 13.0 4.2 1.8 8.8 0.7 3.2 3 1 0 3 3 3 0 Zinc ribbon domain DUF1272 PF06906.11 gi|159042326|ref|YP_001541578.1| - 0.22 11.7 3.0 19 5.4 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) Rpr2 PF04032.16 gi|159042326|ref|YP_001541578.1| - 0.27 11.6 2.2 24 5.3 0.0 3.1 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain TackOD1 PF18551.1 gi|159042326|ref|YP_001541578.1| - 0.35 10.5 2.2 4.4 6.9 0.6 2.4 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|159042326|ref|YP_001541578.1| - 0.55 10.2 6.1 6.7 6.7 1.2 3.2 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.6 gi|159042326|ref|YP_001541578.1| - 0.83 9.0 3.9 15 5.0 0.0 3.3 3 0 0 3 3 3 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|159042326|ref|YP_001541578.1| - 0.9 9.6 4.9 14 5.7 2.2 2.9 2 1 0 2 2 2 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|159042326|ref|YP_001541578.1| - 1.3 9.1 5.2 34 4.5 3.3 3.2 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.13 gi|159042326|ref|YP_001541578.1| - 1.5 8.9 3.8 19 5.4 0.0 3.2 4 0 0 4 4 4 0 Putative zinc finger motif, C2HC5-type DNA_ligase_ZBD PF03119.16 gi|159042326|ref|YP_001541578.1| - 2.4 8.2 10.1 6.9 6.8 0.1 3.7 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain Gln-synt_C PF00120.24 gi|159042327|ref|YP_001541579.1| - 1.3e-99 333.5 0.0 1.6e-99 333.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|159042327|ref|YP_001541579.1| - 2.7e-15 55.9 0.1 5.4e-15 54.9 0.1 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ABC_tran PF00005.27 gi|159042328|ref|YP_001541580.1| - 3.8e-24 85.7 0.0 4.9e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159042328|ref|YP_001541580.1| - 1.3e-12 48.2 0.7 2.3e-07 30.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159042328|ref|YP_001541580.1| - 5.5e-08 32.5 0.0 0.00038 20.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|159042328|ref|YP_001541580.1| - 4.3e-05 23.5 0.1 0.00023 21.1 0.1 2.0 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|159042328|ref|YP_001541580.1| - 4.7e-05 23.8 0.1 8.4e-05 23.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|159042328|ref|YP_001541580.1| - 4.7e-05 23.3 0.0 0.28 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|159042328|ref|YP_001541580.1| - 0.00015 22.2 0.0 0.00054 20.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|159042328|ref|YP_001541580.1| - 0.00028 20.7 0.0 0.00049 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|159042328|ref|YP_001541580.1| - 0.00057 20.4 0.0 0.00098 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|159042328|ref|YP_001541580.1| - 0.0011 18.6 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|159042328|ref|YP_001541580.1| - 0.0013 19.0 0.1 0.0021 18.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|159042328|ref|YP_001541580.1| - 0.0025 18.3 0.2 0.0088 16.6 0.1 2.0 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|159042328|ref|YP_001541580.1| - 0.0026 17.7 0.0 0.01 15.8 0.0 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|159042328|ref|YP_001541580.1| - 0.0028 16.9 0.0 0.0046 16.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.12 gi|159042328|ref|YP_001541580.1| - 0.0033 17.4 0.2 0.011 15.6 0.2 1.9 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.17 gi|159042328|ref|YP_001541580.1| - 0.0038 17.0 0.0 0.2 11.3 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|159042328|ref|YP_001541580.1| - 0.005 16.7 0.0 0.009 15.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 gi|159042328|ref|YP_001541580.1| - 0.006 15.7 0.0 0.01 14.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NB-ARC PF00931.22 gi|159042328|ref|YP_001541580.1| - 0.0072 15.5 0.3 0.019 14.1 0.3 1.8 1 1 0 1 1 1 1 NB-ARC domain AAA_28 PF13521.6 gi|159042328|ref|YP_001541580.1| - 0.0079 16.5 0.0 0.018 15.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|159042328|ref|YP_001541580.1| - 0.0083 16.3 0.3 0.02 15.1 0.1 1.6 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|159042328|ref|YP_001541580.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain cobW PF02492.19 gi|159042328|ref|YP_001541580.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|159042328|ref|YP_001541580.1| - 0.024 14.5 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|159042328|ref|YP_001541580.1| - 0.034 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|159042328|ref|YP_001541580.1| - 0.048 13.7 0.0 0.12 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|159042328|ref|YP_001541580.1| - 0.055 13.2 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain MMR_HSR1 PF01926.23 gi|159042328|ref|YP_001541580.1| - 0.058 13.5 0.0 0.26 11.4 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|159042328|ref|YP_001541580.1| - 0.059 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Cytidylate_kin PF02224.18 gi|159042328|ref|YP_001541580.1| - 0.077 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase MobB PF03205.14 gi|159042328|ref|YP_001541580.1| - 0.11 12.4 0.2 0.25 11.3 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 gi|159042328|ref|YP_001541580.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|159042328|ref|YP_001541580.1| - 0.26 11.0 0.1 0.42 10.3 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Molydop_binding PF01568.21 gi|159042329|ref|YP_001541581.1| - 4.4e-05 23.5 1.2 0.0019 18.2 0.5 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain Peptidase_A24 PF01478.18 gi|159042330|ref|YP_001541582.1| - 8.3e-05 22.9 5.3 8.3e-05 22.9 5.3 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|159042330|ref|YP_001541582.1| - 0.0032 18.0 2.2 0.0048 17.4 0.2 2.2 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II DEAD PF00270.29 gi|159042331|ref|YP_001541583.1| - 1.1e-41 142.5 0.1 4.6e-41 140.5 0.1 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|159042331|ref|YP_001541583.1| - 6.9e-29 100.4 0.1 1.6e-27 96.0 0.0 2.3 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|159042331|ref|YP_001541583.1| - 0.00015 21.9 0.0 0.00026 21.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PALP PF00291.25 gi|159042332|ref|YP_001541584.1| - 7.1e-64 216.0 0.3 8.6e-64 215.8 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.12 gi|159042332|ref|YP_001541584.1| - 6.9e-06 25.5 0.5 1.3e-05 24.7 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|159042332|ref|YP_001541584.1| - 0.0026 17.8 0.1 0.0049 16.9 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|159042332|ref|YP_001541584.1| - 0.0086 16.2 1.9 0.016 15.3 1.9 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|159042332|ref|YP_001541584.1| - 0.013 15.2 5.4 0.028 14.1 5.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|159042332|ref|YP_001541584.1| - 0.013 15.3 0.8 4.7 7.2 0.1 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|159042332|ref|YP_001541584.1| - 0.014 15.3 1.2 0.027 14.4 1.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|159042332|ref|YP_001541584.1| - 0.022 14.4 0.5 0.57 9.9 1.1 2.3 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.11 gi|159042332|ref|YP_001541584.1| - 0.022 14.7 9.2 1.3 9.1 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|159042332|ref|YP_001541584.1| - 0.046 13.7 4.4 1.6 8.8 0.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|159042332|ref|YP_001541584.1| - 0.048 13.7 1.3 0.086 12.9 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF4781 PF16013.5 gi|159042332|ref|YP_001541584.1| - 0.059 12.2 0.0 0.51 9.1 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4781) zinc-ribbons_6 PF07191.12 gi|159042332|ref|YP_001541584.1| - 0.091 12.7 0.3 0.15 12.1 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|159042332|ref|YP_001541584.1| - 0.15 11.7 0.9 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf_C2H2_10 PF18414.1 gi|159042332|ref|YP_001541584.1| - 0.15 11.6 4.0 2.9 7.5 0.9 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger Mu-like_Com PF10122.9 gi|159042332|ref|YP_001541584.1| - 0.16 11.5 1.1 7.7 6.1 0.1 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-RRN7 PF11781.8 gi|159042332|ref|YP_001541584.1| - 0.35 10.6 2.5 1.9 8.2 2.5 2.0 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-HIT PF04438.16 gi|159042332|ref|YP_001541584.1| - 0.39 10.6 3.1 5.3 7.0 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-Mss51 PF13824.6 gi|159042332|ref|YP_001541584.1| - 1.5 9.0 4.9 7.2 6.8 4.9 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|159042332|ref|YP_001541584.1| - 1.6 8.2 7.1 7.8 6.1 0.4 2.2 1 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|159042332|ref|YP_001541584.1| - 2.2 8.3 4.4 8.5 6.4 0.2 2.5 1 1 1 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|159042332|ref|YP_001541584.1| - 3.9 7.5 4.0 21 5.2 0.4 2.3 1 1 1 2 2 2 0 CpXC protein SCP2 PF02036.17 gi|159042333|ref|YP_001541585.1| - 7.8e-12 45.6 0.0 9.3e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.6 gi|159042333|ref|YP_001541585.1| - 0.00011 22.5 0.0 0.00012 22.3 0.0 1.1 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Asparaginase_2 PF01112.18 gi|159042335|ref|YP_001541587.1| - 6.2e-90 301.3 4.3 6.9e-90 301.2 4.3 1.0 1 0 0 1 1 1 1 Asparaginase SP_C-Propep PF08999.10 gi|159042337|ref|YP_001541589.1| - 0.018 14.8 0.8 0.05 13.4 0.8 1.7 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide Pilin_N PF07790.11 gi|159042337|ref|YP_001541589.1| - 0.031 15.2 1.6 0.077 13.9 1.2 1.8 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal KduI PF04962.12 gi|159042338|ref|YP_001541590.1| - 7.8e-26 90.9 0.2 1.5e-25 90.0 0.2 1.4 1 1 0 1 1 1 1 KduI/IolB family Pirin_C_2 PF17954.1 gi|159042338|ref|YP_001541590.1| - 0.072 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain CDC45 PF02724.14 gi|159042338|ref|YP_001541590.1| - 0.13 10.5 0.0 0.15 10.3 0.0 1.1 1 0 0 1 1 1 0 CDC45-like protein AA_permease PF00324.21 gi|159042339|ref|YP_001541591.1| - 1.6e-30 106.2 49.4 8.3e-30 103.8 49.4 1.9 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|159042339|ref|YP_001541591.1| - 3.6e-30 105.1 49.4 5.1e-30 104.7 49.4 1.1 1 0 0 1 1 1 1 Amino acid permease Aldedh PF00171.22 gi|159042340|ref|YP_001541592.1| - 4.6e-168 559.5 0.0 5.2e-168 559.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|159042340|ref|YP_001541592.1| - 0.0002 20.5 0.0 0.00029 20.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) P22_Cro PF14549.6 gi|159042340|ref|YP_001541592.1| - 0.017 14.9 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro MFS_1 PF07690.16 gi|159042341|ref|YP_001541593.1| - 1e-40 139.8 43.6 1e-40 139.8 43.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|159042341|ref|YP_001541593.1| - 0.82 8.5 20.9 0.02 13.7 13.4 1.9 2 0 0 2 2 2 0 MFS_1 like family PPS_PS PF02006.16 gi|159042342|ref|YP_001541594.1| - 1.1e-77 259.6 2.3 1.3e-77 259.3 2.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Pantoate_transf PF02548.15 gi|159042343|ref|YP_001541595.1| - 3.2e-109 364.3 0.0 3.6e-109 364.1 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|159042343|ref|YP_001541595.1| - 1e-06 28.4 0.8 4.7e-06 26.2 0.8 2.0 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Robl_LC7 PF03259.17 gi|159042343|ref|YP_001541595.1| - 0.027 14.2 0.1 0.23 11.2 0.2 2.1 2 0 0 2 2 2 0 Roadblock/LC7 domain Asp_protease_2 PF13650.6 gi|159042344|ref|YP_001541596.1| - 2.9e-09 37.5 0.4 6.2e-09 36.4 0.4 1.7 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|159042344|ref|YP_001541596.1| - 3.4e-08 33.9 0.3 5.3e-08 33.3 0.3 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|159042344|ref|YP_001541596.1| - 5.6e-05 23.4 0.2 9.4e-05 22.7 0.2 1.4 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp PF00026.23 gi|159042344|ref|YP_001541596.1| - 0.045 13.2 0.0 0.045 13.2 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease Peptidase_A3 PF02160.15 gi|159042344|ref|YP_001541596.1| - 0.068 12.6 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) DUF257 PF03192.13 gi|159042344|ref|YP_001541596.1| - 0.097 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 GHMP_kinases_N PF00288.26 gi|159042346|ref|YP_001541598.1| - 7e-09 35.8 0.4 1.1e-08 35.1 0.4 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.11 gi|159042346|ref|YP_001541598.1| - 0.61 10.0 2.9 0.45 10.4 0.4 1.8 1 1 1 2 2 2 0 Translocated intimin receptor (Tir) C-terminus ApbA_C PF08546.11 gi|159042347|ref|YP_001541599.1| - 5.7e-33 113.8 0.1 9.6e-33 113.1 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|159042347|ref|YP_001541599.1| - 2.7e-11 43.3 0.8 2.7e-11 43.3 0.8 2.2 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA SNO PF01174.19 gi|159042348|ref|YP_001541600.1| - 2.9e-45 154.4 0.0 3.3e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|159042348|ref|YP_001541600.1| - 1.2e-08 34.9 0.0 1.6e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.14 gi|159042348|ref|YP_001541600.1| - 5.8e-06 26.0 0.1 7.5e-06 25.7 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|159042348|ref|YP_001541600.1| - 0.0024 17.7 0.0 0.019 14.7 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SOR_SNZ PF01680.17 gi|159042349|ref|YP_001541601.1| - 1.8e-95 318.6 1.5 2.7e-95 318.0 1.5 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|159042349|ref|YP_001541601.1| - 4.9e-06 26.0 3.0 5.5e-06 25.9 0.2 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|159042349|ref|YP_001541601.1| - 0.001 18.6 0.6 0.31 10.5 0.2 3.1 2 1 1 3 3 3 2 Histidine biosynthesis protein Dus PF01207.17 gi|159042349|ref|YP_001541601.1| - 0.0014 17.8 2.2 0.76 8.8 0.0 3.2 3 0 0 3 3 3 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|159042349|ref|YP_001541601.1| - 0.0078 15.6 0.1 0.0078 15.6 0.1 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.21 gi|159042349|ref|YP_001541601.1| - 0.0084 15.3 0.0 0.13 11.4 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|159042349|ref|YP_001541601.1| - 0.05 13.2 0.1 0.59 9.7 0.0 2.3 2 1 0 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TetR_C_27 PF17935.1 gi|159042349|ref|YP_001541601.1| - 0.077 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Glu_synthase PF01645.17 gi|159042349|ref|YP_001541601.1| - 0.095 11.8 0.8 0.21 10.7 0.2 1.7 1 1 1 2 2 2 0 Conserved region in glutamate synthase PGK PF00162.19 gi|159042350|ref|YP_001541602.1| - 1.6e-103 346.6 0.1 1.8e-103 346.4 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|159042351|ref|YP_001541603.1| - 2.3e-18 66.3 3.1 3.6e-18 65.7 3.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|159042351|ref|YP_001541603.1| - 1.5e-12 47.7 0.3 3.8e-12 46.4 0.2 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|159042351|ref|YP_001541603.1| - 1.1e-06 29.0 1.1 5.3e-06 26.7 0.0 2.6 3 1 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|159042351|ref|YP_001541603.1| - 0.00088 20.1 0.9 0.0021 18.9 0.1 2.0 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|159042351|ref|YP_001541603.1| - 0.0027 18.3 1.5 0.0067 17.1 0.0 2.5 3 1 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|159042351|ref|YP_001541603.1| - 0.0066 15.8 0.8 0.13 11.6 0.1 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|159042351|ref|YP_001541603.1| - 0.12 12.6 1.1 0.41 10.9 0.0 2.4 3 1 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain Usp PF00582.26 gi|159042352|ref|YP_001541604.1| - 4.9e-20 72.5 0.0 2.5e-18 67.0 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family NadA PF02445.16 gi|159042353|ref|YP_001541605.1| - 5.2e-100 334.5 0.0 5.9e-100 334.3 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF2063 PF09836.9 gi|159042353|ref|YP_001541605.1| - 0.13 12.5 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative DNA-binding domain FAD_binding_2 PF00890.24 gi|159042354|ref|YP_001541606.1| - 3.3e-75 253.8 0.1 4e-75 253.5 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|159042354|ref|YP_001541606.1| - 7e-13 48.9 0.8 2.9e-11 43.6 0.7 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|159042354|ref|YP_001541606.1| - 2.1e-11 43.9 0.2 2.7e-10 40.3 0.2 2.4 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|159042354|ref|YP_001541606.1| - 4.6e-09 35.9 1.1 6.2e-05 22.4 0.8 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|159042354|ref|YP_001541606.1| - 2.6e-07 30.1 0.1 0.014 14.5 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|159042354|ref|YP_001541606.1| - 1.8e-05 24.7 0.1 0.00075 19.5 0.0 2.7 2 1 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|159042354|ref|YP_001541606.1| - 0.00053 20.2 0.3 0.0014 18.8 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|159042354|ref|YP_001541606.1| - 0.0096 14.7 1.9 0.076 11.7 0.6 2.6 2 1 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|159042354|ref|YP_001541606.1| - 0.029 13.6 0.0 0.37 10.0 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|159042354|ref|YP_001541606.1| - 0.043 12.7 0.5 5.6 5.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase SPASM PF13186.6 gi|159042355|ref|YP_001541607.1| - 1.7e-15 57.3 1.2 3.8e-15 56.2 1.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|159042355|ref|YP_001541607.1| - 3.7e-08 33.9 0.0 7.5e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Asparaginase PF00710.20 gi|159042356|ref|YP_001541608.1| - 1e-56 191.5 0.4 1.7e-56 190.8 0.4 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|159042356|ref|YP_001541608.1| - 4.6e-33 113.8 0.0 3.8e-32 110.9 0.0 2.3 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|159042356|ref|YP_001541608.1| - 2.9e-16 58.5 0.0 7.6e-16 57.2 0.0 1.8 1 0 0 1 1 1 1 GatD N-terminal domain DUF4127 PF13552.6 gi|159042356|ref|YP_001541608.1| - 0.044 12.4 0.0 0.061 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) Peripla_BP_4 PF13407.6 gi|159042356|ref|YP_001541608.1| - 0.15 11.6 0.0 11 5.5 0.0 2.3 2 0 0 2 2 2 0 Periplasmic binding protein domain COXG PF06240.13 gi|159042357|ref|YP_001541609.1| - 1.1e-20 73.9 0.0 1.4e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|159042357|ref|YP_001541609.1| - 1.8e-07 31.5 0.0 2.2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport FliMN_C PF01052.20 gi|159042357|ref|YP_001541609.1| - 0.072 13.1 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term DAO PF01266.24 gi|159042358|ref|YP_001541610.1| - 4.5e-45 154.7 0.2 5.2e-45 154.5 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|159042358|ref|YP_001541610.1| - 9.9e-05 21.6 1.8 0.0002 20.6 1.4 1.7 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|159042358|ref|YP_001541610.1| - 0.00014 20.7 0.4 0.00025 19.9 0.3 1.4 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|159042358|ref|YP_001541610.1| - 0.00033 20.0 0.2 0.00085 18.6 0.2 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|159042358|ref|YP_001541610.1| - 0.00041 19.7 0.0 0.0006 19.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|159042358|ref|YP_001541610.1| - 0.00083 18.7 1.8 0.0029 16.9 1.0 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|159042358|ref|YP_001541610.1| - 0.0017 18.5 2.5 0.0017 18.5 2.5 2.1 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|159042358|ref|YP_001541610.1| - 0.003 17.0 1.9 0.0034 16.8 1.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|159042358|ref|YP_001541610.1| - 0.004 16.3 0.4 0.0075 15.4 0.4 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|159042358|ref|YP_001541610.1| - 0.21 10.4 0.4 0.31 9.9 0.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FGGY_N PF00370.21 gi|159042359|ref|YP_001541611.1| - 8.6e-71 238.4 0.0 1.2e-70 237.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|159042359|ref|YP_001541611.1| - 3.5e-55 186.8 0.1 6.7e-55 185.9 0.1 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|159042359|ref|YP_001541611.1| - 0.031 13.8 0.0 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Aminotran_1_2 PF00155.21 gi|159042360|ref|YP_001541612.1| - 1.5e-18 67.2 0.0 2e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3922 PF13059.6 gi|159042360|ref|YP_001541612.1| - 0.074 13.5 0.0 0.28 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3992) DUF1286 PF06939.11 gi|159042361|ref|YP_001541613.1| - 1.7e-35 121.7 8.4 1.7e-35 121.7 8.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|159042361|ref|YP_001541613.1| - 0.00029 20.2 9.5 0.0023 17.3 9.5 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|159042361|ref|YP_001541613.1| - 0.12 12.1 4.9 0.34 10.6 2.5 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) HTH_10 PF04967.12 gi|159042362|ref|YP_001541614.1| - 4.5e-16 58.4 0.1 7.4e-16 57.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Thioredoxin_6 PF13848.6 gi|159042362|ref|YP_001541614.1| - 7.3e-05 22.8 0.3 0.00014 21.9 0.3 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GerE PF00196.19 gi|159042362|ref|YP_001541614.1| - 0.00064 19.2 1.2 0.0011 18.5 0.3 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|159042362|ref|YP_001541614.1| - 0.0037 17.7 0.1 0.36 11.3 0.0 2.9 4 0 0 4 4 4 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|159042362|ref|YP_001541614.1| - 0.0099 15.5 0.0 0.044 13.5 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|159042362|ref|YP_001541614.1| - 0.011 15.2 0.0 0.026 14.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|159042362|ref|YP_001541614.1| - 0.017 15.4 0.5 0.27 11.5 0.1 2.3 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_DeoR PF08220.12 gi|159042362|ref|YP_001541614.1| - 0.04 13.7 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Spo0A_C PF08769.11 gi|159042362|ref|YP_001541614.1| - 0.041 14.0 0.1 0.095 12.8 0.1 1.6 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal HTH_5 PF01022.20 gi|159042362|ref|YP_001541614.1| - 0.099 12.5 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Ribonuclease_P PF00825.18 gi|159042362|ref|YP_001541614.1| - 0.12 12.5 0.4 0.58 10.3 0.2 2.0 2 0 0 2 2 2 0 Ribonuclease P HTH_11 PF08279.12 gi|159042362|ref|YP_001541614.1| - 0.15 12.0 0.1 0.46 10.5 0.0 1.9 2 0 0 2 2 2 0 HTH domain FeoC PF09012.10 gi|159042362|ref|YP_001541614.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator Sugar_tr PF00083.24 gi|159042363|ref|YP_001541615.1| - 3.6e-26 92.1 30.2 4.7e-26 91.7 30.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159042363|ref|YP_001541615.1| - 6.9e-25 87.7 45.2 6.9e-25 87.7 45.2 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|159042363|ref|YP_001541615.1| - 0.098 11.2 44.4 0.027 13.1 8.6 3.3 3 1 1 4 4 4 0 MFS/sugar transport protein DUF697 PF05128.12 gi|159042363|ref|YP_001541615.1| - 1.7 8.3 6.3 3.1 7.5 0.8 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF697) NAD_binding_2 PF03446.15 gi|159042364|ref|YP_001541616.1| - 4.9e-28 98.3 0.0 7e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|159042364|ref|YP_001541616.1| - 1.2e-20 74.0 0.0 2e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|159042364|ref|YP_001541616.1| - 3.6e-06 26.5 0.0 5.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BCA_ABC_TP_C PF12399.8 gi|159042364|ref|YP_001541616.1| - 0.0062 16.4 0.0 0.33 10.9 0.0 2.4 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter F420_oxidored PF03807.17 gi|159042364|ref|YP_001541616.1| - 0.0086 16.6 0.0 0.016 15.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|159042364|ref|YP_001541616.1| - 0.011 15.6 0.1 0.023 14.6 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFOR_C PF01314.18 gi|159042365|ref|YP_001541617.1| - 1.2e-115 386.6 0.0 5e-115 384.6 0.0 1.8 1 1 1 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|159042365|ref|YP_001541617.1| - 9.9e-67 224.7 1.0 1.6e-66 224.0 1.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AMP-binding PF00501.28 gi|159042366|ref|YP_001541618.1| - 0.12 10.9 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 AMP-binding enzyme RHH_1 PF01402.21 gi|159042367|ref|YP_001541619.1| - 5.9e-06 26.0 0.2 9e-06 25.4 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VAPB_antitox PF02697.14 gi|159042367|ref|YP_001541619.1| - 0.00048 20.8 0.0 0.0006 20.5 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin MatP_C PF17414.2 gi|159042367|ref|YP_001541619.1| - 0.017 15.3 0.9 0.028 14.6 0.1 1.7 2 1 0 2 2 2 0 MatP C-terminal ribbon-helix-helix domain G-gamma PF00631.22 gi|159042367|ref|YP_001541619.1| - 0.06 13.4 0.2 0.076 13.0 0.2 1.2 1 0 0 1 1 1 0 GGL domain RelB PF04221.12 gi|159042367|ref|YP_001541619.1| - 0.09 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 RelB antitoxin NTP_transf_2 PF01909.23 gi|159042368|ref|YP_001541620.1| - 7.2e-09 35.8 0.0 8.3e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|159042368|ref|YP_001541620.1| - 0.00012 22.1 0.0 0.00017 21.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase FANC_SAP PF18081.1 gi|159042368|ref|YP_001541620.1| - 0.14 12.4 0.4 0.19 11.9 0.4 1.2 1 0 0 1 1 1 0 Fanconi anemia-associated nuclease SAP domain DUF294 PF03445.13 gi|159042368|ref|YP_001541620.1| - 0.14 11.9 0.0 0.38 10.6 0.0 1.7 1 1 1 2 2 2 0 Putative nucleotidyltransferase DUF294 Sugar_tr PF00083.24 gi|159042369|ref|YP_001541621.1| - 9.9e-25 87.3 31.6 1.4e-24 86.8 31.6 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|159042369|ref|YP_001541621.1| - 1.2e-22 80.3 68.5 2.5e-19 69.4 44.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|159042369|ref|YP_001541621.1| - 0.12 10.9 42.2 0.029 12.9 17.4 3.9 2 2 0 3 3 3 0 MFS/sugar transport protein ADH_N PF08240.12 gi|159042370|ref|YP_001541622.1| - 7.9e-23 80.4 0.7 1.3e-22 79.7 0.7 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|159042370|ref|YP_001541622.1| - 0.0004 20.4 0.0 0.00095 19.2 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|159042370|ref|YP_001541622.1| - 0.014 14.9 0.1 0.028 13.9 0.1 1.5 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus DHquinase_I PF01487.15 gi|159042371|ref|YP_001541623.1| - 7.1e-44 150.8 0.0 8.5e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Cupin_2 PF07883.11 gi|159042372|ref|YP_001541624.1| - 2.7e-18 65.4 0.1 3.5e-18 65.1 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|159042372|ref|YP_001541624.1| - 2.4e-07 30.5 0.0 3.4e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|159042372|ref|YP_001541624.1| - 1.8e-06 27.9 0.0 2.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|159042372|ref|YP_001541624.1| - 0.00011 22.1 0.0 0.00014 21.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|159042372|ref|YP_001541624.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|159042372|ref|YP_001541624.1| - 0.0036 17.2 0.0 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain EutQ PF06249.12 gi|159042372|ref|YP_001541624.1| - 0.0092 15.7 0.0 0.01 15.6 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ DMSP_lyase PF16867.5 gi|159042372|ref|YP_001541624.1| - 0.032 13.9 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase CDO_I PF05995.12 gi|159042372|ref|YP_001541624.1| - 0.04 13.2 0.0 0.31 10.4 0.0 1.9 1 1 0 1 1 1 0 Cysteine dioxygenase type I Ectoine_synth PF06339.12 gi|159042372|ref|YP_001541624.1| - 0.051 13.8 0.0 0.069 13.3 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase TPP_enzyme_N PF02776.18 gi|159042373|ref|YP_001541625.1| - 1.4e-58 197.3 0.4 1.1e-52 178.1 0.1 2.7 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|159042373|ref|YP_001541625.1| - 5.6e-42 142.7 0.0 1.4e-41 141.4 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|159042373|ref|YP_001541625.1| - 8.7e-39 132.8 0.0 9.7e-38 129.3 0.0 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HMGL-like PF00682.19 gi|159042374|ref|YP_001541626.1| - 2.1e-48 165.2 0.1 3.1e-48 164.6 0.1 1.3 1 0 0 1 1 1 1 HMGL-like HTH_19 PF12844.7 gi|159042374|ref|YP_001541626.1| - 0.0087 16.1 0.7 5.9 7.0 0.0 3.5 3 1 0 3 3 3 2 Helix-turn-helix domain CoA_transf_3 PF02515.17 gi|159042375|ref|YP_001541627.1| - 6e-99 331.6 0.0 7e-99 331.4 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III HTH_10 PF04967.12 gi|159042376|ref|YP_001541628.1| - 3.5e-21 74.8 0.0 4.8e-20 71.1 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_5 PF01022.20 gi|159042376|ref|YP_001541628.1| - 0.0023 17.7 0.0 0.007 16.2 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|159042376|ref|YP_001541628.1| - 0.0033 17.3 0.0 0.016 15.1 0.0 1.9 2 0 0 2 2 2 1 MarR family TetR_N PF00440.23 gi|159042376|ref|YP_001541628.1| - 0.0093 15.7 0.0 0.026 14.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_24 PF13412.6 gi|159042376|ref|YP_001541628.1| - 0.012 15.2 0.4 0.05 13.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|159042376|ref|YP_001541628.1| - 0.024 14.3 0.1 0.059 13.0 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|159042376|ref|YP_001541628.1| - 0.032 14.0 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain LacI PF00356.21 gi|159042376|ref|YP_001541628.1| - 0.049 13.4 0.0 0.2 11.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_Tnp_Tc3_1 PF11427.8 gi|159042376|ref|YP_001541628.1| - 0.1 12.4 0.2 1.9 8.4 0.0 2.6 2 1 0 2 2 2 0 Tc3 transposase UxuA PF03786.13 gi|159042377|ref|YP_001541629.1| - 8.1e-64 215.6 0.0 1e-63 215.3 0.0 1.1 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|159042377|ref|YP_001541629.1| - 5.6e-11 42.3 0.0 8e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HEPN PF05168.14 gi|159042377|ref|YP_001541629.1| - 1.2e-07 31.8 0.0 2.1e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 HEPN domain DUF917 PF06032.12 gi|159042379|ref|YP_001541631.1| - 2.2e-135 451.0 0.0 2.5e-135 450.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Hydant_A_N PF05378.13 gi|159042380|ref|YP_001541632.1| - 1.6e-38 132.2 0.5 1.6e-38 132.2 0.5 2.6 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|159042380|ref|YP_001541632.1| - 1.6e-26 93.3 9.7 5.7e-23 81.6 3.3 3.4 2 2 0 3 3 3 2 Hydantoinase/oxoprolinase BcrAD_BadFG PF01869.20 gi|159042380|ref|YP_001541632.1| - 3e-07 30.2 4.0 1.9e-06 27.6 0.2 2.9 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|159042380|ref|YP_001541632.1| - 0.0011 18.6 1.2 0.0076 15.8 0.3 2.6 3 0 0 3 3 3 1 ROK family DEDD_Tnp_IS110 PF01548.17 gi|159042380|ref|YP_001541632.1| - 0.015 15.2 0.1 0.032 14.1 0.1 1.5 1 0 0 1 1 1 0 Transposase FtsA PF14450.6 gi|159042380|ref|YP_001541632.1| - 0.016 15.6 3.8 0.55 10.7 0.4 3.2 2 2 0 2 2 2 0 Cell division protein FtsA DUF1177 PF06675.11 gi|159042381|ref|YP_001541633.1| - 5.8e-123 409.0 0.4 5.8e-123 409.0 0.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1177) IncE PF17627.2 gi|159042381|ref|YP_001541633.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Inclusion membrane protein E AroM PF07302.11 gi|159042382|ref|YP_001541634.1| - 2.4e-74 249.4 0.1 2.7e-74 249.2 0.1 1.0 1 0 0 1 1 1 1 AroM protein DUF4828 PF16110.5 gi|159042382|ref|YP_001541634.1| - 0.05 14.1 0.1 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4828) Viral_cys_rich PF08008.12 gi|159042382|ref|YP_001541634.1| - 0.13 12.3 0.1 0.53 10.4 0.0 2.0 2 0 0 2 2 2 0 Viral cysteine rich Transp_cyt_pur PF02133.15 gi|159042383|ref|YP_001541635.1| - 1.5e-19 70.1 46.4 2.6e-19 69.3 46.4 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Radical_SAM PF04055.21 gi|159042384|ref|YP_001541636.1| - 4.4e-10 40.2 0.0 8.3e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|159042384|ref|YP_001541636.1| - 0.06 13.0 4.4 2.2 7.9 3.7 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) Nre_N PF04894.12 gi|159042385|ref|YP_001541637.1| - 1.1e-99 333.6 0.0 1.4e-99 333.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|159042385|ref|YP_001541637.1| - 2.1e-38 130.6 0.0 3.4e-38 129.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Ubiq_cyt_C_chap PF03981.12 gi|159042385|ref|YP_001541637.1| - 0.21 11.6 0.4 22 5.1 0.0 2.2 1 1 1 2 2 2 0 Ubiquinol-cytochrome C chaperone Ribosomal_L5_C PF00673.21 gi|159042386|ref|YP_001541638.1| - 1.9e-16 60.0 0.0 3.1e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|159042386|ref|YP_001541638.1| - 1.9e-15 56.9 0.0 3e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 DUF2862 PF11061.8 gi|159042386|ref|YP_001541638.1| - 0.048 13.5 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) Ribosomal_S4e PF00900.20 gi|159042387|ref|YP_001541639.1| - 9.3e-24 83.1 0.1 1.5e-23 82.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|159042387|ref|YP_001541639.1| - 5.1e-10 38.9 0.2 2.8e-09 36.5 0.1 2.1 2 0 0 2 2 2 1 S4 domain RS4NT PF08071.12 gi|159042387|ref|YP_001541639.1| - 1.8e-08 34.3 5.4 2.9e-08 33.7 5.4 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain Ribosomal_L26 PF16906.5 gi|159042388|ref|YP_001541640.1| - 1.4e-25 89.5 0.3 2.2e-25 88.9 0.3 1.3 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|159042388|ref|YP_001541640.1| - 9.7e-09 34.9 2.8 9.7e-09 34.9 2.8 2.1 2 0 0 2 2 2 1 KOW motif IF2_N PF04760.15 gi|159042389|ref|YP_001541641.1| - 0.06 13.2 0.6 0.72 9.7 0.4 2.7 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF3385 PF11865.8 gi|159042389|ref|YP_001541641.1| - 0.064 13.2 0.1 0.077 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3385) Nepo_coat_N PF03689.15 gi|159042390|ref|YP_001541642.1| - 0.014 15.3 0.0 0.044 13.7 0.0 1.8 1 1 1 2 2 2 0 Nepovirus coat protein, N-terminal domain VERL PF11386.8 gi|159042390|ref|YP_001541642.1| - 0.094 12.9 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Vitelline envelope receptor for lysin PRC PF05239.16 gi|159042391|ref|YP_001541643.1| - 8.2e-07 29.0 6.4 0.0014 18.6 0.4 2.4 2 0 0 2 2 2 2 PRC-barrel domain UL45 PF05473.12 gi|159042391|ref|YP_001541643.1| - 0.13 11.8 0.0 0.13 11.8 0.0 1.8 3 0 0 3 3 3 0 UL45 protein, carbohydrate-binding C-type lectin-like Med26_M PF15694.5 gi|159042391|ref|YP_001541643.1| - 0.21 11.6 2.0 0.32 11.0 2.0 1.1 1 0 0 1 1 1 0 Mediator complex subunit 26 middle domain Ribosomal_L6 PF00347.23 gi|159042392|ref|YP_001541644.1| - 4.1e-23 81.8 8.6 8.9e-12 45.5 0.6 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 AA_kinase PF00696.28 gi|159042393|ref|YP_001541645.1| - 1.1e-31 110.3 0.1 1.4e-31 109.9 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family UPF0051 PF01458.17 gi|159042394|ref|YP_001541646.1| - 1.2e-36 126.4 1.4 2.4e-36 125.5 1.0 1.6 1 1 1 2 2 2 2 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|159042395|ref|YP_001541647.1| - 2.2e-67 226.9 0.2 3.9e-67 226.1 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Phosphatase PF15698.5 gi|159042395|ref|YP_001541647.1| - 0.058 12.5 0.1 0.12 11.5 0.0 1.5 2 0 0 2 2 2 0 Phosphatase ABC_tran PF00005.27 gi|159042396|ref|YP_001541648.1| - 6e-22 78.6 0.0 7.9e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|159042396|ref|YP_001541648.1| - 1.4e-09 38.2 0.1 0.00015 21.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|159042396|ref|YP_001541648.1| - 0.00067 19.6 0.3 0.0038 17.1 0.0 2.3 3 0 0 3 3 3 1 RsgA GTPase SMC_N PF02463.19 gi|159042396|ref|YP_001541648.1| - 0.001 18.6 0.0 0.082 12.3 0.1 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|159042396|ref|YP_001541648.1| - 0.001 18.9 0.0 1.2 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|159042396|ref|YP_001541648.1| - 0.0022 17.7 0.1 0.0061 16.3 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|159042396|ref|YP_001541648.1| - 0.003 18.1 0.0 0.0045 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|159042396|ref|YP_001541648.1| - 0.01 16.0 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159042396|ref|YP_001541648.1| - 0.014 15.8 0.1 0.064 13.7 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|159042396|ref|YP_001541648.1| - 0.015 14.9 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|159042396|ref|YP_001541648.1| - 0.041 12.5 0.0 2.4 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|159042396|ref|YP_001541648.1| - 0.058 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|159042396|ref|YP_001541648.1| - 0.087 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|159042396|ref|YP_001541648.1| - 0.09 13.0 0.1 0.33 11.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|159042396|ref|YP_001541648.1| - 0.14 12.5 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Ribosomal_S14 PF00253.21 gi|159042397|ref|YP_001541649.1| - 2.9e-11 42.9 4.7 3.8e-11 42.6 4.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|159042397|ref|YP_001541649.1| - 0.006 16.4 4.7 0.0084 16.0 4.7 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS91 PF14319.6 gi|159042397|ref|YP_001541649.1| - 0.0081 16.2 0.3 0.0084 16.1 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain DUF1451 PF07295.11 gi|159042397|ref|YP_001541649.1| - 0.031 14.3 0.3 0.037 14.1 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn_ribbon_SprT PF17283.2 gi|159042397|ref|YP_001541649.1| - 0.14 12.1 5.2 0.24 11.4 5.2 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Lys_export PF03956.13 gi|159042398|ref|YP_001541650.1| - 2.4e-41 141.4 28.0 1.5e-40 138.8 18.4 2.0 2 0 0 2 2 2 2 Lysine exporter LysO CbiG_N PF11760.8 gi|159042398|ref|YP_001541650.1| - 0.0088 16.0 0.8 0.025 14.6 0.8 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal DUF5325 PF17259.2 gi|159042398|ref|YP_001541650.1| - 1.2 9.0 10.6 0.68 9.8 0.3 3.6 2 1 0 2 2 2 0 Family of unknown function (DUF5325) AAA PF00004.29 gi|159042399|ref|YP_001541651.1| - 5.1e-23 81.9 0.0 8.1e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|159042399|ref|YP_001541651.1| - 0.0017 17.6 0.0 0.0037 16.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|159042399|ref|YP_001541651.1| - 0.01 16.2 0.1 0.098 13.0 0.1 2.2 2 0 0 2 2 2 0 AAA ATPase domain RuvB_N PF05496.12 gi|159042399|ref|YP_001541651.1| - 0.012 15.3 0.0 0.06 13.1 0.0 2.0 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|159042399|ref|YP_001541651.1| - 0.02 14.1 0.0 0.042 13.1 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_22 PF13401.6 gi|159042399|ref|YP_001541651.1| - 0.022 15.1 0.4 0.49 10.7 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|159042399|ref|YP_001541651.1| - 0.084 12.9 0.6 0.39 10.7 0.2 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|159042399|ref|YP_001541651.1| - 0.1 12.2 0.8 2.3 7.7 0.5 2.2 1 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|159042399|ref|YP_001541651.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|159042399|ref|YP_001541651.1| - 0.18 11.2 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|159042399|ref|YP_001541651.1| - 0.18 11.2 0.1 0.34 10.3 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein ATPase_2 PF01637.18 gi|159042399|ref|YP_001541651.1| - 0.2 11.5 0.0 10 5.9 0.1 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|159042399|ref|YP_001541651.1| - 0.23 10.8 0.0 0.51 9.7 0.0 1.5 2 0 0 2 2 2 0 KaiC AAA_2 PF07724.14 gi|159042399|ref|YP_001541651.1| - 0.27 11.3 0.0 0.79 9.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF2067 PF09840.9 gi|159042400|ref|YP_001541652.1| - 3.8e-29 101.6 3.9 4.5e-29 101.3 3.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF1717 PF05414.11 gi|159042400|ref|YP_001541652.1| - 0.024 15.0 0.1 0.046 14.2 0.1 1.5 1 0 0 1 1 1 0 Viral domain of unknown function (DUF1717) Glyco_hydro_65C PF03633.15 gi|159042400|ref|YP_001541652.1| - 0.12 12.3 0.3 0.39 10.7 0.1 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_L7Ae PF01248.26 gi|159042401|ref|YP_001541653.1| - 3.5e-30 103.6 0.0 4.7e-30 103.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|159042401|ref|YP_001541653.1| - 0.00069 19.4 0.0 0.0013 18.6 0.0 1.5 1 1 0 1 1 1 1 PELOTA RNA binding domain Ribosomal_S28e PF01200.18 gi|159042402|ref|YP_001541654.1| - 4.9e-30 103.3 4.8 5.6e-30 103.1 4.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e SBP_bac_5 PF00496.22 gi|159042403|ref|YP_001541655.1| - 1.5e-27 96.6 7.5 3.5e-27 95.3 7.5 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|159042403|ref|YP_001541655.1| - 0.16 11.8 12.7 0.24 11.3 12.7 1.2 1 0 0 1 1 1 0 Rifin Fer2_3 PF13085.6 gi|159042404|ref|YP_001541656.1| - 0.89 9.6 3.9 1.4 9.0 3.9 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain EPSP_synthase PF00275.20 gi|159042405|ref|YP_001541657.1| - 1.4e-72 244.7 0.0 1.8e-72 244.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Usp PF00582.26 gi|159042406|ref|YP_001541658.1| - 1.5e-37 129.2 0.8 1.8e-37 129.0 0.8 1.1 1 0 0 1 1 1 1 Universal stress protein family RNA_binding PF01877.17 gi|159042407|ref|YP_001541659.1| - 2.5e-32 111.6 0.8 3e-32 111.4 0.8 1.1 1 0 0 1 1 1 1 RNA binding Radical_SAM PF04055.21 gi|159042408|ref|YP_001541660.1| - 1.9e-11 44.6 0.0 3.5e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily zinc_ribbon_4 PF13717.6 gi|159042409|ref|YP_001541661.1| - 1.1e-06 28.5 0.9 0.019 14.9 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|159042409|ref|YP_001541661.1| - 5.4e-05 22.4 2.7 0.12 11.8 0.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|159042409|ref|YP_001541661.1| - 0.00015 21.8 0.5 0.00041 20.4 0.5 1.7 1 1 1 2 2 2 2 Zinc ribbon domain UPF0547 PF10571.9 gi|159042409|ref|YP_001541661.1| - 0.0003 20.8 4.1 0.011 15.8 0.5 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 CpXC PF14353.6 gi|159042409|ref|YP_001541661.1| - 0.00032 20.7 0.2 0.46 10.6 0.1 2.1 2 0 0 2 2 2 2 CpXC protein zf_UBZ PF18439.1 gi|159042409|ref|YP_001541661.1| - 0.00052 19.6 0.8 0.028 14.0 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger Lar_restr_allev PF14354.6 gi|159042409|ref|YP_001541661.1| - 0.00054 20.3 0.5 0.00064 20.1 0.5 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.6 gi|159042409|ref|YP_001541661.1| - 0.0007 19.4 1.1 0.12 12.3 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG Zn_ribbon_17 PF17120.5 gi|159042409|ref|YP_001541661.1| - 0.0011 18.5 0.2 0.0015 18.1 0.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon, C4HC2 type zf-Di19 PF05605.12 gi|159042409|ref|YP_001541661.1| - 0.0012 19.1 0.7 1.4 9.3 0.1 2.1 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_5 PF13719.6 gi|159042409|ref|YP_001541661.1| - 0.0015 18.3 1.2 0.017 14.8 1.3 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|159042409|ref|YP_001541661.1| - 0.0015 19.2 1.3 1 10.4 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger YacG PF03884.14 gi|159042409|ref|YP_001541661.1| - 0.0025 17.5 0.5 0.4 10.4 0.1 2.2 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG FYDLN_acid PF09538.10 gi|159042409|ref|YP_001541661.1| - 0.0026 18.4 0.6 1 10.1 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.12 gi|159042409|ref|YP_001541661.1| - 0.003 17.0 0.4 0.73 9.4 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding DUF983 PF06170.12 gi|159042409|ref|YP_001541661.1| - 0.0032 17.8 0.2 1.2 9.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF983) zf-H2C2_2 PF13465.6 gi|159042409|ref|YP_001541661.1| - 0.0033 17.8 1.3 1.4 9.5 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|159042409|ref|YP_001541661.1| - 0.0036 17.2 2.8 0.46 10.5 0.1 2.1 1 1 1 2 2 2 1 Transposase zinc-ribbon domain HypA PF01155.19 gi|159042409|ref|YP_001541661.1| - 0.004 17.2 0.1 0.0057 16.7 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|159042409|ref|YP_001541661.1| - 0.0048 16.6 6.0 0.57 10.0 0.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-CHCC PF10276.9 gi|159042409|ref|YP_001541661.1| - 0.0051 16.8 1.8 0.43 10.7 0.3 2.3 2 0 0 2 2 2 1 Zinc-finger domain DUF3268 PF11672.8 gi|159042409|ref|YP_001541661.1| - 0.0052 17.1 0.2 0.006 16.9 0.2 1.2 1 0 0 1 1 1 1 zinc-finger-containing domain zf-AN1 PF01428.16 gi|159042409|ref|YP_001541661.1| - 0.0053 16.9 0.7 3.7 7.8 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_9 PF14369.6 gi|159042409|ref|YP_001541661.1| - 0.0053 17.0 0.2 2.5 8.5 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon Rad50_zn_hook PF04423.14 gi|159042409|ref|YP_001541661.1| - 0.0069 16.2 0.7 2.8 7.9 0.1 2.2 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-BED PF02892.15 gi|159042409|ref|YP_001541661.1| - 0.0082 16.1 0.1 1.4 9.0 0.0 2.2 2 0 0 2 2 2 1 BED zinc finger YhfH PF14149.6 gi|159042409|ref|YP_001541661.1| - 0.0095 15.9 0.2 5.2 7.1 0.1 2.3 2 0 0 2 2 2 0 YhfH-like protein DZR PF12773.7 gi|159042409|ref|YP_001541661.1| - 0.012 15.6 0.2 0.026 14.5 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|159042409|ref|YP_001541661.1| - 0.014 14.7 0.1 0.69 9.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Nudix_N_2 PF14803.6 gi|159042409|ref|YP_001541661.1| - 0.016 15.1 1.2 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2HC_2 PF13913.6 gi|159042409|ref|YP_001541661.1| - 0.017 15.0 4.6 0.34 10.9 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type ADK_lid PF05191.14 gi|159042409|ref|YP_001541661.1| - 0.022 14.7 0.4 2.2 8.3 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid IBR PF01485.21 gi|159042409|ref|YP_001541661.1| - 0.023 14.9 0.5 0.046 13.9 0.5 1.5 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain XPA_N PF01286.18 gi|159042409|ref|YP_001541661.1| - 0.034 14.2 1.1 0.18 11.9 0.0 2.2 2 1 0 2 2 2 0 XPA protein N-terminal zf-IS66 PF13005.7 gi|159042409|ref|YP_001541661.1| - 0.035 14.5 0.2 13 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C2H2 PF00096.26 gi|159042409|ref|YP_001541661.1| - 0.036 14.5 5.7 2.2 8.9 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ogr_Delta PF04606.12 gi|159042409|ref|YP_001541661.1| - 0.038 14.0 0.5 9.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn-C2H2_12 PF18112.1 gi|159042409|ref|YP_001541661.1| - 0.042 14.3 1.4 3.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain TerY_C PF15616.6 gi|159042409|ref|YP_001541661.1| - 0.042 13.9 0.2 0.085 13.0 0.2 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain zf-RING_2 PF13639.6 gi|159042409|ref|YP_001541661.1| - 0.044 14.1 0.2 0.07 13.5 0.2 1.4 1 0 0 1 1 1 0 Ring finger domain Terminase_GpA PF05876.12 gi|159042409|ref|YP_001541661.1| - 0.059 11.9 0.2 0.073 11.6 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc-ribbons_6 PF07191.12 gi|159042409|ref|YP_001541661.1| - 0.061 13.3 0.3 0.21 11.6 0.3 1.8 1 1 0 1 1 1 0 zinc-ribbons DUF2256 PF10013.9 gi|159042409|ref|YP_001541661.1| - 0.069 13.3 0.6 14 5.9 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-ISL3 PF14690.6 gi|159042409|ref|YP_001541661.1| - 0.07 13.8 0.7 11 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UBZ_FAAP20 PF15750.5 gi|159042409|ref|YP_001541661.1| - 0.074 13.0 0.8 9.6 6.2 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-binding zinc-finger Acetone_carb_G PF08882.11 gi|159042409|ref|YP_001541661.1| - 0.08 13.1 0.7 0.5 10.5 0.1 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Prok-RING_1 PF14446.6 gi|159042409|ref|YP_001541661.1| - 0.083 12.8 1.6 0.38 10.7 1.6 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_S27e PF01667.17 gi|159042409|ref|YP_001541661.1| - 0.088 12.5 0.6 5 6.9 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 DUF35_N PF12172.8 gi|159042409|ref|YP_001541661.1| - 0.091 12.7 1.4 3.7 7.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF4379 PF14311.6 gi|159042409|ref|YP_001541661.1| - 0.12 12.7 1.9 2.9 8.3 2.3 2.4 1 1 2 3 3 3 0 Probable Zinc-ribbon domain TFIIS_C PF01096.18 gi|159042409|ref|YP_001541661.1| - 0.13 12.2 1.8 8.9 6.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DiS_P_DiS PF06750.13 gi|159042409|ref|YP_001541661.1| - 0.13 12.4 0.6 5.6 7.2 0.0 2.1 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|159042409|ref|YP_001541661.1| - 0.21 11.5 1.4 0.94 9.4 1.2 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|159042409|ref|YP_001541661.1| - 0.23 10.9 3.1 3.7 7.1 0.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2_6 PF13912.6 gi|159042409|ref|YP_001541661.1| - 0.33 11.0 5.0 6.6 6.9 0.5 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger PhnA_Zn_Ribbon PF08274.12 gi|159042409|ref|YP_001541661.1| - 0.45 10.5 3.3 8.2 6.5 3.3 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF1610 PF07754.11 gi|159042409|ref|YP_001541661.1| - 0.81 9.7 5.3 0.89 9.6 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-tcix PF14952.6 gi|159042409|ref|YP_001541661.1| - 0.98 9.1 4.5 15 5.3 0.9 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf_C2H2_10 PF18414.1 gi|159042409|ref|YP_001541661.1| - 4.8 6.8 5.6 2.1 8.0 0.7 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger RNA_pol_Rpb5_C PF01191.19 gi|159042410|ref|YP_001541662.1| - 1.3e-26 92.3 0.0 1.7e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain HSP20 PF00011.21 gi|159042411|ref|YP_001541663.1| - 1.4e-14 54.1 1.5 7.3e-13 48.5 1.5 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|159042411|ref|YP_001541663.1| - 6.1e-13 48.1 0.0 9.2e-13 47.6 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|159042411|ref|YP_001541663.1| - 0.0012 19.8 0.1 0.0018 19.2 0.1 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|159042411|ref|YP_001541663.1| - 0.0042 17.2 0.1 0.0064 16.6 0.1 1.3 1 0 0 1 1 1 1 GvpH FKBP26_C PF18046.1 gi|159042411|ref|YP_001541663.1| - 0.019 15.1 4.4 0.67 10.1 0.0 2.7 3 0 0 3 3 3 0 FKBP26_C-terminal PIH1_CS PF18201.1 gi|159042411|ref|YP_001541663.1| - 0.051 14.0 0.0 0.084 13.3 0.0 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain GHMP_kinases_N PF00288.26 gi|159042412|ref|YP_001541664.1| - 5.3e-10 39.4 3.3 1.1e-09 38.3 3.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|159042412|ref|YP_001541664.1| - 0.00012 22.4 0.3 0.0013 19.0 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal eRF1_1 PF03463.15 gi|159042413|ref|YP_001541665.1| - 2.5e-14 53.4 0.0 4.2e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|159042413|ref|YP_001541665.1| - 1.1e-13 51.6 0.2 9.1e-13 48.7 0.0 2.3 2 0 0 2 2 2 1 eRF1 domain 3 DUF2107 PF09880.9 gi|159042413|ref|YP_001541665.1| - 0.12 12.4 0.4 0.26 11.4 0.4 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) RNA_pol_Rpb5_C PF01191.19 gi|159042414|ref|YP_001541666.1| - 0.058 13.3 0.0 0.67 9.9 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain TPP_enzyme_C PF02775.21 gi|159042415|ref|YP_001541667.1| - 9.2e-25 87.2 1.3 1.2e-24 86.8 0.5 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|159042416|ref|YP_001541668.1| - 4.5e-74 249.1 0.6 5.7e-74 248.7 0.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|159042416|ref|YP_001541668.1| - 4.8e-23 81.4 0.0 9.2e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|159042416|ref|YP_001541668.1| - 8.9e-05 22.4 0.0 0.0002 21.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|159042417|ref|YP_001541669.1| - 5.5e-14 51.3 15.0 5e-08 32.4 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159042417|ref|YP_001541669.1| - 1e-09 38.4 6.7 2e-09 37.4 6.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159042417|ref|YP_001541669.1| - 1.3e-09 38.5 31.2 2e-06 28.3 10.9 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159042417|ref|YP_001541669.1| - 2.4e-09 36.9 14.2 3e-05 23.9 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|159042417|ref|YP_001541669.1| - 1.2e-08 34.9 7.6 1.8e-08 34.3 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159042417|ref|YP_001541669.1| - 8.3e-08 33.1 9.7 0.00077 20.4 2.8 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|159042417|ref|YP_001541669.1| - 8.7e-08 31.8 13.2 0.0009 19.2 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159042417|ref|YP_001541669.1| - 1.5e-06 28.2 18.4 1.1e-05 25.5 9.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|159042417|ref|YP_001541669.1| - 5.1e-06 26.8 5.6 8.4e-06 26.1 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|159042417|ref|YP_001541669.1| - 3.7e-05 24.4 9.2 0.008 16.9 0.3 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|159042417|ref|YP_001541669.1| - 0.00046 20.5 10.6 0.13 12.8 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|159042417|ref|YP_001541669.1| - 0.0036 17.8 13.0 0.033 14.7 2.2 2.5 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|159042417|ref|YP_001541669.1| - 0.0083 16.7 11.4 0.11 13.1 11.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|159042417|ref|YP_001541669.1| - 0.099 13.5 9.3 0.15 12.9 1.7 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF678 PF05077.12 gi|159042417|ref|YP_001541669.1| - 0.21 11.7 2.5 2.8 8.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF678) POR PF01558.18 gi|159042418|ref|YP_001541670.1| - 2.7e-34 118.8 1.0 3.1e-34 118.6 1.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase RtcB PF01139.17 gi|159042419|ref|YP_001541671.1| - 2.1e-161 537.7 0.0 4.3e-161 536.7 0.0 1.4 2 0 0 2 2 2 1 tRNA-splicing ligase RtcB DUF3656 PF12392.8 gi|159042419|ref|YP_001541671.1| - 0.061 14.0 0.0 0.14 12.8 0.0 1.5 1 0 0 1 1 1 0 Collagenase DUF126 PF01989.16 gi|159042420|ref|YP_001541672.1| - 2.7e-23 81.5 0.4 5.6e-23 80.5 0.4 1.5 1 0 0 1 1 1 1 Aconitase X swivel domain ThiF PF00899.21 gi|159042422|ref|YP_001541674.1| - 8.4e-58 195.6 0.0 9.8e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 ThiF family ST7 PF04184.12 gi|159042422|ref|YP_001541674.1| - 0.014 13.9 0.0 0.017 13.6 0.0 1.0 1 0 0 1 1 1 0 ST7 protein Shikimate_DH PF01488.20 gi|159042422|ref|YP_001541674.1| - 0.047 13.7 2.2 0.53 10.4 1.3 2.1 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Methyltransf_12 PF08242.12 gi|159042422|ref|YP_001541674.1| - 0.062 14.1 0.1 0.17 12.6 0.1 1.8 2 1 0 2 2 2 0 Methyltransferase domain Cas6 PF09559.10 gi|159042422|ref|YP_001541674.1| - 0.11 12.5 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Cas6 Crispr Herpes_PAP PF03325.13 gi|159042422|ref|YP_001541674.1| - 0.11 12.0 0.2 0.17 11.4 0.2 1.2 1 0 0 1 1 1 0 Herpesvirus polymerase accessory protein MS_channel PF00924.18 gi|159042423|ref|YP_001541675.1| - 5.6e-21 75.0 0.5 1.1e-20 74.1 0.5 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2177 PF09945.9 gi|159042423|ref|YP_001541675.1| - 0.1 12.7 10.1 0.89 9.7 1.0 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2177) FAD_binding_2 PF00890.24 gi|159042424|ref|YP_001541676.1| - 5.4e-104 348.6 0.1 6.4e-104 348.3 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|159042424|ref|YP_001541676.1| - 2.2e-42 144.1 0.2 3.6e-42 143.4 0.2 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Thi4 PF01946.17 gi|159042424|ref|YP_001541676.1| - 2e-05 23.9 1.5 0.0098 15.1 0.1 2.6 3 0 0 3 3 3 2 Thi4 family Pyr_redox_2 PF07992.14 gi|159042424|ref|YP_001541676.1| - 0.00013 21.4 0.5 0.0023 17.2 0.3 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|159042424|ref|YP_001541676.1| - 0.0068 15.8 0.1 0.86 8.9 0.1 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase DUF4294 PF14127.6 gi|159042424|ref|YP_001541676.1| - 0.011 15.7 0.0 1.5 8.7 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4294) DAO PF01266.24 gi|159042424|ref|YP_001541676.1| - 0.038 13.6 0.1 0.062 12.9 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|159042424|ref|YP_001541676.1| - 0.43 9.6 2.1 0.74 8.8 0.9 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A MetOD2 PF18548.1 gi|159042425|ref|YP_001541677.1| - 0.0033 17.5 0.5 0.25 11.5 0.1 2.2 2 0 0 2 2 2 1 Metanogen output domain 2 Prefoldin PF02996.17 gi|159042425|ref|YP_001541677.1| - 0.0078 16.1 0.2 2.6 8.0 0.0 2.3 2 0 0 2 2 2 2 Prefoldin subunit BLOC1_2 PF10046.9 gi|159042425|ref|YP_001541677.1| - 0.015 15.6 0.6 0.51 10.7 0.1 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4988 PF16378.5 gi|159042425|ref|YP_001541677.1| - 0.025 14.3 2.9 0.45 10.2 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function DASH_Dad2 PF08654.10 gi|159042425|ref|YP_001541677.1| - 0.099 13.1 0.4 2.1 8.8 0.1 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad2 FliJ PF02050.16 gi|159042425|ref|YP_001541677.1| - 0.13 12.5 0.0 0.24 11.7 0.0 1.5 2 0 0 2 2 2 0 Flagellar FliJ protein TEX12 PF15219.6 gi|159042425|ref|YP_001541677.1| - 0.16 12.3 0.9 0.96 9.8 0.1 2.0 1 1 1 2 2 2 0 Testis-expressed 12 OMPdecase PF00215.24 gi|159042426|ref|YP_001541678.1| - 2.5e-21 76.3 2.2 4.5e-21 75.5 2.2 1.4 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|159042426|ref|YP_001541678.1| - 0.019 14.7 1.0 0.063 13.0 1.1 1.7 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain NTP_transf_2 PF01909.23 gi|159042426|ref|YP_001541678.1| - 0.098 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyltransferase domain CobA_CobO_BtuR PF02572.15 gi|159042427|ref|YP_001541679.1| - 3.3e-42 144.6 0.0 5.2e-42 144.0 0.0 1.3 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TniB PF05621.11 gi|159042427|ref|YP_001541679.1| - 0.00022 20.7 0.0 0.00033 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|159042427|ref|YP_001541679.1| - 0.02 15.3 0.0 0.044 14.2 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Ribosomal_L13 PF00572.18 gi|159042428|ref|YP_001541680.1| - 3.2e-11 43.5 0.7 4.7e-09 36.6 0.7 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Flp1_like PF16982.5 gi|159042429|ref|YP_001541681.1| - 0.038 13.4 4.1 0.078 12.4 4.1 1.5 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain DUF4245 PF14030.6 gi|159042429|ref|YP_001541681.1| - 0.089 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) Big_1 PF02369.16 gi|159042429|ref|YP_001541681.1| - 0.19 11.8 2.8 0.58 10.2 2.8 1.9 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 1) GPI-anchored PF10342.9 gi|159042429|ref|YP_001541681.1| - 0.51 11.1 3.3 1.6 9.5 3.3 1.9 1 0 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF4115 PF13464.6 gi|159042430|ref|YP_001541682.1| - 0.0093 16.1 0.4 0.42 10.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4115) DUF2341 PF10102.9 gi|159042431|ref|YP_001541683.1| - 0.0077 16.8 0.1 0.0077 16.8 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Pilin_N PF07790.11 gi|159042432|ref|YP_001541684.1| - 0.0097 16.8 3.3 0.0097 16.8 3.3 1.8 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal PsaL PF02605.15 gi|159042432|ref|YP_001541684.1| - 0.044 13.4 0.3 0.097 12.3 0.3 1.7 1 1 0 1 1 1 0 Photosystem I reaction centre subunit XI DEAD PF00270.29 gi|159042434|ref|YP_001541686.1| - 1.2e-30 106.6 0.0 1.4e-28 99.9 0.0 2.9 2 1 1 3 3 3 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|159042434|ref|YP_001541686.1| - 1.4e-26 93.5 0.0 2.9e-26 92.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|159042434|ref|YP_001541686.1| - 2.8e-17 63.0 0.0 5.2e-16 59.0 0.1 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|159042434|ref|YP_001541686.1| - 1.1e-06 28.7 0.0 2.3e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|159042434|ref|YP_001541686.1| - 0.0068 16.4 0.0 0.02 14.9 0.0 1.8 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_19 PF13245.6 gi|159042434|ref|YP_001541686.1| - 0.036 14.4 0.0 0.19 12.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain HTH_23 PF13384.6 gi|159042434|ref|YP_001541686.1| - 0.043 13.6 0.1 0.78 9.6 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain HTH_11 PF08279.12 gi|159042434|ref|YP_001541686.1| - 0.059 13.3 0.1 0.18 11.7 0.1 1.8 1 0 0 1 1 1 0 HTH domain AAA_25 PF13481.6 gi|159042434|ref|YP_001541686.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Trm112p PF03966.16 gi|159042435|ref|YP_001541687.1| - 4.2e-15 56.1 0.4 6.1e-15 55.5 0.4 1.3 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|159042435|ref|YP_001541687.1| - 0.17 12.1 2.3 0.53 10.5 1.1 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain SMC_N PF02463.19 gi|159042437|ref|YP_001541689.1| - 1.8e-17 63.5 0.0 4.6e-17 62.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|159042437|ref|YP_001541689.1| - 1.6e-15 58.2 48.2 4.5e-07 30.6 37.4 4.8 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|159042437|ref|YP_001541689.1| - 2e-12 47.5 15.7 8.3e-06 25.7 8.9 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|159042437|ref|YP_001541689.1| - 8.5e-07 29.1 10.8 0.00021 21.2 2.3 2.8 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Sec34 PF04136.15 gi|159042437|ref|YP_001541689.1| - 9e-07 28.9 20.8 0.0057 16.5 0.3 5.7 4 3 1 5 5 5 2 Sec34-like family AAA_29 PF13555.6 gi|159042437|ref|YP_001541689.1| - 5.7e-05 22.8 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|159042437|ref|YP_001541689.1| - 8.3e-05 22.3 11.6 0.00046 19.8 0.1 4.2 3 1 2 5 5 5 1 AAA domain DUF948 PF06103.11 gi|159042437|ref|YP_001541689.1| - 0.0001 22.5 13.1 0.12 12.6 0.2 5.8 5 3 1 6 6 5 1 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|159042437|ref|YP_001541689.1| - 0.00011 22.6 15.7 2.3 8.7 0.0 7.2 3 3 2 6 6 6 1 Nucleopolyhedrovirus P10 protein LOH1CR12 PF10158.9 gi|159042437|ref|YP_001541689.1| - 0.00072 19.6 14.4 2.2 8.3 0.5 4.9 4 0 0 4 4 4 2 Tumour suppressor protein Spc7 PF08317.11 gi|159042437|ref|YP_001541689.1| - 0.00083 18.3 3.1 0.00083 18.3 3.1 4.3 3 1 1 4 4 4 2 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|159042437|ref|YP_001541689.1| - 0.00096 19.4 44.7 0.16 12.3 3.1 7.8 3 3 6 9 9 9 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|159042437|ref|YP_001541689.1| - 0.00099 19.1 34.8 0.26 11.3 0.9 6.1 5 1 0 6 6 6 3 Laminin Domain II GAS PF13851.6 gi|159042437|ref|YP_001541689.1| - 0.0033 16.8 45.8 0.038 13.4 4.0 4.7 4 0 0 4 4 4 3 Growth-arrest specific micro-tubule binding Snapin_Pallidin PF14712.6 gi|159042437|ref|YP_001541689.1| - 0.0096 16.3 0.5 0.0096 16.3 0.5 7.1 4 3 2 8 8 7 2 Snapin/Pallidin Laminin_I PF06008.14 gi|159042437|ref|YP_001541689.1| - 0.027 14.2 37.7 0.014 15.1 3.3 4.5 2 1 2 4 4 4 0 Laminin Domain I CENP-F_leu_zip PF10473.9 gi|159042437|ref|YP_001541689.1| - 0.037 14.1 52.1 0.2 11.7 6.9 4.9 3 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2203 PF09969.9 gi|159042437|ref|YP_001541689.1| - 0.058 14.1 30.2 0.32 11.7 1.6 5.9 2 1 5 7 7 7 0 Uncharacterized conserved protein (DUF2203) DUF1664 PF07889.12 gi|159042437|ref|YP_001541689.1| - 0.058 13.4 28.3 0.63 10.1 1.0 6.0 4 2 2 6 6 6 0 Protein of unknown function (DUF1664) APG17 PF04108.12 gi|159042437|ref|YP_001541689.1| - 0.059 12.5 40.0 0.085 12.0 4.4 4.6 1 1 3 5 5 5 0 Autophagy protein Apg17 Occludin_ELL PF07303.13 gi|159042437|ref|YP_001541689.1| - 0.07 13.9 34.2 0.63 10.8 2.8 6.1 3 2 2 5 5 5 0 Occludin homology domain WXG100 PF06013.12 gi|159042437|ref|YP_001541689.1| - 0.076 13.3 11.4 19 5.6 0.1 5.9 6 1 1 7 7 5 0 Proteins of 100 residues with WXG OmpH PF03938.14 gi|159042437|ref|YP_001541689.1| - 0.091 13.1 30.3 2.7 8.3 0.4 4.9 3 1 2 5 5 5 0 Outer membrane protein (OmpH-like) AAA_16 PF13191.6 gi|159042437|ref|YP_001541689.1| - 0.11 12.9 7.6 0.62 10.4 0.0 3.8 2 1 0 3 3 3 0 AAA ATPase domain ABC_tran PF00005.27 gi|159042437|ref|YP_001541689.1| - 0.24 11.9 3.7 4.2 7.9 0.0 3.7 2 1 0 3 3 3 0 ABC transporter Spectrin PF00435.21 gi|159042437|ref|YP_001541689.1| - 0.25 11.9 30.3 3.2 8.3 0.4 6.2 2 2 3 5 5 5 0 Spectrin repeat Syntaxin_2 PF14523.6 gi|159042437|ref|YP_001541689.1| - 0.25 11.7 23.1 10 6.6 0.4 5.2 4 0 0 4 4 4 0 Syntaxin-like protein HypD PF01924.16 gi|159042437|ref|YP_001541689.1| - 0.27 10.3 0.4 15 4.5 0.1 2.3 2 0 0 2 2 2 0 Hydrogenase formation hypA family FapA PF03961.13 gi|159042437|ref|YP_001541689.1| - 0.31 9.6 43.7 0.59 8.7 4.7 4.6 2 2 3 5 5 5 0 Flagellar Assembly Protein A TMPIT PF07851.13 gi|159042437|ref|YP_001541689.1| - 0.38 10.0 26.6 0.037 13.3 1.2 4.7 2 1 3 5 5 5 0 TMPIT-like protein DUF5344 PF17279.2 gi|159042437|ref|YP_001541689.1| - 0.41 11.3 23.3 1.8 9.2 0.7 5.9 4 1 1 5 5 5 0 Family of unknown function (DUF5344) Seryl_tRNA_N PF02403.22 gi|159042437|ref|YP_001541689.1| - 0.65 10.3 43.9 2.5 8.4 4.7 6.3 2 1 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain MtrG PF04210.13 gi|159042437|ref|YP_001541689.1| - 0.86 9.5 10.4 15 5.6 0.1 5.5 6 0 0 6 6 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G SAS4 PF15460.6 gi|159042437|ref|YP_001541689.1| - 1.1 9.4 0.0 1.1 9.4 0.0 5.7 4 2 2 7 7 6 0 Something about silencing, SAS, complex subunit 4 Fib_alpha PF08702.10 gi|159042437|ref|YP_001541689.1| - 1.1 9.5 33.6 0.84 9.8 1.3 5.0 2 1 3 5 5 5 0 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.15 gi|159042437|ref|YP_001541689.1| - 1.1 8.7 32.1 0.27 10.8 3.9 3.7 1 1 2 3 3 3 0 Exonuclease VII, large subunit AAA_18 PF13238.6 gi|159042437|ref|YP_001541689.1| - 1.6 9.3 0.0 1.6 9.3 0.0 4.0 3 2 1 4 4 3 0 AAA domain V_ATPase_I PF01496.19 gi|159042437|ref|YP_001541689.1| - 1.7 6.5 26.4 0.54 8.1 4.3 2.9 1 1 1 3 3 3 0 V-type ATPase 116kDa subunit family HSBP1 PF06825.12 gi|159042437|ref|YP_001541689.1| - 1.8 8.5 17.8 4.4 7.2 0.8 5.5 5 1 0 5 5 5 0 Heat shock factor binding protein 1 DUF3450 PF11932.8 gi|159042437|ref|YP_001541689.1| - 3.3 6.9 34.9 0.039 13.3 1.9 5.2 3 1 1 5 5 5 0 Protein of unknown function (DUF3450) FliD_N PF02465.18 gi|159042437|ref|YP_001541689.1| - 3.9 8.2 16.9 3.7 8.3 0.3 6.1 4 4 1 5 5 5 0 Flagellar hook-associated protein 2 N-terminus Prefoldin_2 PF01920.20 gi|159042437|ref|YP_001541689.1| - 4.6 7.2 40.1 0.18 11.8 1.3 7.8 5 3 0 6 6 6 0 Prefoldin subunit KxDL PF10241.9 gi|159042437|ref|YP_001541689.1| - 7.7 6.9 24.1 0.26 11.6 0.2 6.8 4 4 3 7 7 7 0 Uncharacterized conserved protein DUF16 PF01519.16 gi|159042437|ref|YP_001541689.1| - 8.3 7.0 31.4 0.33 11.5 3.5 5.7 2 2 3 5 5 5 0 Protein of unknown function DUF16 ABC_tran_CTD PF16326.5 gi|159042437|ref|YP_001541689.1| - 9.4 6.6 47.0 4.2 7.7 0.5 8.8 5 3 4 9 9 9 0 ABC transporter C-terminal domain SKA2 PF16740.5 gi|159042437|ref|YP_001541689.1| - 9.8 6.0 26.3 0.9 9.3 0.8 6.1 3 2 2 5 5 5 0 Spindle and kinetochore-associated protein 2 Glyco_trans_4_2 PF13477.6 gi|159042438|ref|YP_001541690.1| - 0.047 13.7 0.0 0.58 10.2 0.0 2.6 1 1 1 2 2 2 0 Glycosyl transferase 4-like Rimk_N PF18030.1 gi|159042438|ref|YP_001541690.1| - 0.074 13.4 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 RimK PreATP-grasp domain tRNA-synt_2 PF00152.20 gi|159042440|ref|YP_001541692.1| - 9.9e-93 310.6 0.0 1.2e-92 310.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|159042440|ref|YP_001541692.1| - 8.4e-16 57.7 0.5 1.7e-15 56.8 0.5 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|159042440|ref|YP_001541692.1| - 0.0053 16.3 0.3 0.048 13.1 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Mtp PF03821.16 gi|159042441|ref|YP_001541693.1| - 0.0099 15.5 4.9 0.011 15.3 4.9 1.1 1 0 0 1 1 1 1 Golgi 4-transmembrane spanning transporter RRM_DME PF15628.6 gi|159042441|ref|YP_001541693.1| - 0.11 12.7 0.2 0.75 10.0 0.1 2.0 1 1 1 2 2 2 0 RRM in Demeter SUR7 PF06687.12 gi|159042441|ref|YP_001541693.1| - 3 7.4 9.9 4.9 6.7 9.9 1.3 1 1 0 1 1 1 0 SUR7/PalI family HhH-GPD PF00730.25 gi|159042442|ref|YP_001541694.1| - 2e-20 73.2 0.0 2.6e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|159042442|ref|YP_001541694.1| - 2.4e-05 24.0 0.0 6.8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|159042442|ref|YP_001541694.1| - 0.02 15.5 0.0 0.094 13.3 0.0 2.2 2 2 0 2 2 2 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|159042442|ref|YP_001541694.1| - 0.27 11.6 7.4 0.41 11.0 7.4 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Ribosomal_L38e PF01781.18 gi|159042443|ref|YP_001541695.1| - 0.0014 18.7 0.3 0.0016 18.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L38e protein family Coprogen_oxidas PF01218.18 gi|159042443|ref|YP_001541695.1| - 0.022 13.5 0.0 0.023 13.4 0.0 1.0 1 0 0 1 1 1 0 Coproporphyrinogen III oxidase ABC_tran PF00005.27 gi|159042444|ref|YP_001541696.1| - 7.9e-33 113.9 0.0 1.2e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159042444|ref|YP_001541696.1| - 5.9e-05 23.5 0.0 0.00011 22.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|159042444|ref|YP_001541696.1| - 0.0016 18.8 0.2 0.11 12.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|159042444|ref|YP_001541696.1| - 0.028 14.8 0.0 0.038 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|159042444|ref|YP_001541696.1| - 0.038 13.9 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|159042444|ref|YP_001541696.1| - 0.067 13.2 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|159042444|ref|YP_001541696.1| - 0.098 12.4 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|159042444|ref|YP_001541696.1| - 0.11 12.3 0.8 9.9 5.9 0.0 2.2 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF188 PF02639.14 gi|159042444|ref|YP_001541696.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 AAA_30 PF13604.6 gi|159042444|ref|YP_001541696.1| - 0.2 11.4 0.1 0.47 10.1 0.1 1.5 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|159042444|ref|YP_001541696.1| - 0.21 11.3 0.4 0.38 10.5 0.4 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 gi|159042445|ref|YP_001541697.1| - 3.9e-26 92.2 0.0 5.3e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|159042445|ref|YP_001541697.1| - 5.3e-19 68.5 0.0 8.8e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|159042445|ref|YP_001541697.1| - 1e-09 38.7 1.0 8.5e-07 29.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|159042445|ref|YP_001541697.1| - 7.9e-08 32.0 0.1 1.3e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|159042445|ref|YP_001541697.1| - 2.4e-05 24.2 0.4 0.0079 16.0 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|159042445|ref|YP_001541697.1| - 7.4e-05 22.4 0.1 0.00015 21.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|159042445|ref|YP_001541697.1| - 0.0017 18.6 0.4 0.023 15.0 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|159042445|ref|YP_001541697.1| - 0.0094 16.3 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|159042445|ref|YP_001541697.1| - 0.012 16.1 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|159042445|ref|YP_001541697.1| - 0.024 14.4 0.1 0.49 10.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.29 gi|159042445|ref|YP_001541697.1| - 0.027 14.9 0.1 0.081 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|159042445|ref|YP_001541697.1| - 0.034 14.2 0.0 0.07 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|159042445|ref|YP_001541697.1| - 0.045 13.7 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PRK PF00485.18 gi|159042445|ref|YP_001541697.1| - 0.047 13.4 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|159042445|ref|YP_001541697.1| - 0.061 12.5 0.2 0.061 12.5 0.2 1.7 3 0 0 3 3 3 0 NB-ARC domain DUF87 PF01935.17 gi|159042445|ref|YP_001541697.1| - 0.077 13.1 0.1 0.21 11.6 0.1 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|159042445|ref|YP_001541697.1| - 0.08 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|159042445|ref|YP_001541697.1| - 0.095 12.1 0.2 0.23 10.9 0.1 1.6 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.22 gi|159042445|ref|YP_001541697.1| - 0.13 12.7 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|159042445|ref|YP_001541697.1| - 0.14 11.5 0.3 1.4 8.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Hepar_II_III PF07940.13 gi|159042446|ref|YP_001541698.1| - 3.2e-29 102.2 0.6 5.3e-29 101.5 0.6 1.3 1 0 0 1 1 1 1 Heparinase II/III-like protein Hepar_II_III_N PF16889.5 gi|159042446|ref|YP_001541698.1| - 1.1e-05 24.9 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Heparinase II/III N-terminus Ribosomal_L15e PF00827.17 gi|159042447|ref|YP_001541699.1| - 9.4e-64 214.7 7.1 1.1e-63 214.4 7.1 1.1 1 0 0 1 1 1 1 Ribosomal L15 PGM_PMM_I PF02878.16 gi|159042448|ref|YP_001541700.1| - 5.9e-37 126.5 0.0 9.9e-37 125.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|159042448|ref|YP_001541700.1| - 4.2e-24 85.2 0.1 8.7e-24 84.1 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|159042448|ref|YP_001541700.1| - 1.6e-17 63.7 0.0 2.9e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|159042448|ref|YP_001541700.1| - 3.6e-08 33.5 0.0 9.2e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF99 PF01949.16 gi|159042449|ref|YP_001541701.1| - 1.1e-55 188.0 0.0 1.2e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Nuc_deoxyrib_tr PF05014.15 gi|159042450|ref|YP_001541702.1| - 6.9e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase LDcluster4 PF18306.1 gi|159042450|ref|YP_001541702.1| - 0.027 14.0 0.0 0.065 12.8 0.0 1.6 1 0 0 1 1 1 0 SLOG cluster4 family SIS_2 PF13580.6 gi|159042451|ref|YP_001541703.1| - 6.5e-44 149.3 0.0 8.6e-44 148.9 0.0 1.2 1 0 0 1 1 1 1 SIS domain DUF2529 PF10740.9 gi|159042451|ref|YP_001541703.1| - 8.9e-05 22.2 0.0 0.0069 16.1 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF2529) SIS PF01380.22 gi|159042451|ref|YP_001541703.1| - 0.0017 18.2 0.1 0.0071 16.2 0.0 2.0 2 0 0 2 2 2 1 SIS domain DMRL_synthase PF00885.19 gi|159042451|ref|YP_001541703.1| - 0.057 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase DUF1343 PF07075.11 gi|159042452|ref|YP_001541704.1| - 5.6e-117 391.0 0.0 6.3e-117 390.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1343) tRNA-synt_2c PF01411.19 gi|159042453|ref|YP_001541705.1| - 8.6e-121 404.1 0.0 1.2e-120 403.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|159042453|ref|YP_001541705.1| - 1.9e-13 50.3 1.2 4e-13 49.2 1.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|159042453|ref|YP_001541705.1| - 2.7e-07 31.1 0.5 5.9e-07 30.0 0.5 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|159042453|ref|YP_001541705.1| - 0.0064 15.8 0.2 0.013 14.8 0.2 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Focal_AT PF03623.13 gi|159042453|ref|YP_001541705.1| - 0.066 13.2 0.1 0.31 11.0 0.0 2.0 2 0 0 2 2 2 0 Focal adhesion targeting region MazE_antitoxin PF04014.18 gi|159042454|ref|YP_001541706.1| - 4.2e-11 42.5 0.1 2.7e-07 30.3 0.0 2.2 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin Radical_SAM PF04055.21 gi|159042455|ref|YP_001541707.1| - 1.1e-17 64.9 0.0 2.1e-17 64.0 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|159042455|ref|YP_001541707.1| - 2.2e-07 31.2 0.0 3.9e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|159042455|ref|YP_001541707.1| - 0.00099 19.6 0.0 0.00099 19.6 0.0 1.6 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|159042455|ref|YP_001541707.1| - 0.002 18.3 0.0 0.0056 16.8 0.0 1.8 1 1 1 2 2 2 1 4Fe-4S single cluster domain HEM4 PF02602.15 gi|159042456|ref|YP_001541708.1| - 1e-33 116.6 0.0 1.3e-33 116.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD ATP-synt_C PF00137.21 gi|159042457|ref|YP_001541709.1| - 6.4e-11 42.4 17.4 6.4e-11 42.4 17.4 1.5 2 0 0 2 2 2 1 ATP synthase subunit C CxxCxxCC PF03692.15 gi|159042459|ref|YP_001541711.1| - 1.9e-08 34.8 0.3 3.2e-08 34.1 0.3 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Peptidase_C39 PF03412.15 gi|159042459|ref|YP_001541711.1| - 0.017 14.9 0.1 2.2 8.1 0.0 2.2 1 1 1 2 2 2 0 Peptidase C39 family DUF483 PF04467.12 gi|159042459|ref|YP_001541711.1| - 0.059 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF483) Ribosomal_S30 PF04758.14 gi|159042461|ref|YP_001541713.1| - 1.3e-10 41.3 0.8 1.6e-10 41.0 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 FAM181 PF15238.6 gi|159042461|ref|YP_001541713.1| - 0.0056 16.6 0.2 0.0056 16.6 0.2 1.0 1 0 0 1 1 1 1 FAM181 SHE3 PF17078.5 gi|159042462|ref|YP_001541714.1| - 0.00011 22.0 7.5 0.00019 21.2 7.5 1.3 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 APG6_N PF17675.1 gi|159042462|ref|YP_001541714.1| - 0.00034 21.1 29.1 0.001 19.6 8.9 3.0 2 1 1 3 3 3 2 Apg6 coiled-coil region Prominin PF05478.11 gi|159042462|ref|YP_001541714.1| - 0.0014 16.7 3.4 0.0021 16.1 3.4 1.2 1 0 0 1 1 1 1 Prominin COG6 PF06419.11 gi|159042462|ref|YP_001541714.1| - 0.0036 15.6 6.0 0.0051 15.1 6.0 1.3 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 TMF_DNA_bd PF12329.8 gi|159042462|ref|YP_001541714.1| - 0.0065 16.4 10.9 0.0065 16.4 10.9 3.2 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding SinI PF08671.10 gi|159042462|ref|YP_001541714.1| - 0.0076 16.0 0.0 0.027 14.2 0.0 2.0 1 0 0 1 1 1 1 Anti-repressor SinI Iso_dh PF00180.20 gi|159042462|ref|YP_001541714.1| - 0.027 13.6 0.3 0.068 12.3 0.3 1.6 1 1 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase zf-C4H2 PF10146.9 gi|159042462|ref|YP_001541714.1| - 0.038 14.3 14.7 0.16 12.3 15.1 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein RE_AlwI PF09491.10 gi|159042462|ref|YP_001541714.1| - 0.039 12.8 7.9 0.058 12.2 7.9 1.3 1 0 0 1 1 1 0 AlwI restriction endonuclease GlnE PF03710.15 gi|159042462|ref|YP_001541714.1| - 0.051 13.0 5.8 0.069 12.6 0.1 2.5 1 1 2 3 3 3 0 Glutamate-ammonia ligase adenylyltransferase DUF4763 PF15960.5 gi|159042462|ref|YP_001541714.1| - 0.066 12.5 7.3 0.068 12.5 6.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) DUF3449 PF11931.8 gi|159042462|ref|YP_001541714.1| - 0.077 12.8 5.3 0.14 11.9 4.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3449) AAA_23 PF13476.6 gi|159042462|ref|YP_001541714.1| - 0.084 13.4 10.8 3.6 8.0 10.8 2.2 1 1 0 1 1 1 0 AAA domain DUF4224 PF13986.6 gi|159042462|ref|YP_001541714.1| - 0.12 12.2 0.9 2 8.4 0.0 3.1 3 1 0 3 3 2 0 Domain of unknown function (DUF4224) Allexi_40kDa PF05549.11 gi|159042462|ref|YP_001541714.1| - 0.15 11.6 3.1 0.3 10.6 3.1 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein Sec34 PF04136.15 gi|159042462|ref|YP_001541714.1| - 0.17 11.8 6.2 2.5 8.0 0.5 2.5 1 1 1 2 2 2 0 Sec34-like family CCDC-167 PF15188.6 gi|159042462|ref|YP_001541714.1| - 0.18 12.1 22.3 0.19 12.1 9.9 3.0 3 1 0 3 3 2 0 Coiled-coil domain-containing protein 167 EzrA PF06160.12 gi|159042462|ref|YP_001541714.1| - 0.22 9.6 20.2 0.069 11.3 9.0 2.4 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA Fib_alpha PF08702.10 gi|159042462|ref|YP_001541714.1| - 0.23 11.7 11.0 0.16 12.1 8.8 1.9 2 1 0 2 2 1 0 Fibrinogen alpha/beta chain family NAPRTase_C PF17956.1 gi|159042462|ref|YP_001541714.1| - 0.23 11.9 4.1 12 6.4 0.6 2.7 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain UPF0242 PF06785.11 gi|159042462|ref|YP_001541714.1| - 0.32 11.1 13.6 0.041 14.0 9.6 1.6 2 0 0 2 2 1 0 Uncharacterised protein family (UPF0242) N-terminus EMP24_GP25L PF01105.24 gi|159042462|ref|YP_001541714.1| - 0.4 10.6 10.0 4.1 7.3 3.6 2.4 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Golgin_A5 PF09787.9 gi|159042462|ref|YP_001541714.1| - 0.4 10.1 13.6 0.06 12.8 10.0 1.5 2 0 0 2 2 1 0 Golgin subfamily A member 5 DUF948 PF06103.11 gi|159042462|ref|YP_001541714.1| - 0.42 10.9 3.2 10 6.4 0.2 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Nif11 PF07862.11 gi|159042462|ref|YP_001541714.1| - 0.61 10.4 2.9 1.2 9.5 0.1 3.0 4 0 0 4 4 1 0 Nif11 domain FapA PF03961.13 gi|159042462|ref|YP_001541714.1| - 0.68 8.5 15.0 0.97 8.0 12.3 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF2482 PF10655.9 gi|159042462|ref|YP_001541714.1| - 0.87 10.1 6.9 0.37 11.3 0.3 2.8 1 1 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) DUF4709 PF15821.5 gi|159042462|ref|YP_001541714.1| - 0.92 9.8 7.9 5.5 7.3 7.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4709) HMMR_N PF15905.5 gi|159042462|ref|YP_001541714.1| - 0.94 8.9 15.8 0.073 12.5 10.3 1.9 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal 5_nucleotid PF05761.14 gi|159042462|ref|YP_001541714.1| - 0.99 8.2 4.6 1.4 7.7 4.6 1.4 1 0 0 1 1 1 0 5' nucleotidase family Cluap1 PF10234.9 gi|159042462|ref|YP_001541714.1| - 1 8.7 13.9 0.2 11.1 8.1 2.0 2 0 0 2 2 2 0 Clusterin-associated protein-1 YabA PF06156.13 gi|159042462|ref|YP_001541714.1| - 1.2 9.8 12.8 8.6 7.1 12.8 2.3 1 1 0 1 1 1 0 Initiation control protein YabA AAA_13 PF13166.6 gi|159042462|ref|YP_001541714.1| - 1.3 7.5 14.3 0.2 10.3 10.7 1.3 2 0 0 2 2 1 0 AAA domain TMPIT PF07851.13 gi|159042462|ref|YP_001541714.1| - 1.4 8.1 10.7 0.46 9.7 7.5 1.7 2 1 0 2 2 2 0 TMPIT-like protein AAA_11 PF13086.6 gi|159042462|ref|YP_001541714.1| - 1.5 8.6 5.0 2.2 8.0 5.0 1.3 1 0 0 1 1 1 0 AAA domain Phage_GPO PF05929.11 gi|159042462|ref|YP_001541714.1| - 1.6 8.3 5.3 2.7 7.5 5.3 1.4 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Tweety PF04906.13 gi|159042462|ref|YP_001541714.1| - 1.8 7.1 4.8 5 5.7 4.8 1.7 1 1 0 1 1 1 0 Tweety Cytochrom_C_2 PF01322.20 gi|159042462|ref|YP_001541714.1| - 1.9 9.4 4.8 1.7 9.6 3.1 1.8 1 1 0 1 1 1 0 Cytochrome C' GAS PF13851.6 gi|159042462|ref|YP_001541714.1| - 2.4 7.5 22.8 0.6 9.4 17.3 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|159042462|ref|YP_001541714.1| - 2.4 8.4 20.6 0.37 11.0 14.8 2.6 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|159042462|ref|YP_001541714.1| - 2.4 8.2 9.1 32 4.6 7.0 3.1 2 1 2 4 4 3 0 Protein of unknown function (DUF1664) Cep57_CLD_2 PF14197.6 gi|159042462|ref|YP_001541714.1| - 3.3 7.9 15.6 2.2 8.5 8.5 3.3 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 JAKMIP_CC3 PF16034.5 gi|159042462|ref|YP_001541714.1| - 3.4 7.6 17.2 3.4e+02 1.0 17.2 2.4 1 1 0 1 1 1 0 JAKMIP CC3 domain V_ATPase_I PF01496.19 gi|159042462|ref|YP_001541714.1| - 3.4 5.5 8.8 4.5 5.1 8.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF632 PF04782.12 gi|159042462|ref|YP_001541714.1| - 4.2 6.6 16.2 2.1 7.6 7.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF632) Jnk-SapK_ap_N PF09744.9 gi|159042462|ref|YP_001541714.1| - 4.4 7.5 20.4 2.5 8.3 18.1 1.8 2 1 0 2 2 1 0 JNK_SAPK-associated protein-1 Phage_GP20 PF06810.11 gi|159042462|ref|YP_001541714.1| - 4.8 7.0 16.7 3.5 7.4 13.0 2.3 2 1 0 2 2 2 0 Phage minor structural protein GP20 Cauli_AT PF03233.13 gi|159042462|ref|YP_001541714.1| - 7.4 6.5 9.8 9.5 6.1 8.0 2.1 1 1 1 2 2 2 0 Aphid transmission protein DNA_pol_alpha_N PF12254.8 gi|159042462|ref|YP_001541714.1| - 7.6 6.7 9.3 44 4.2 3.9 3.1 1 1 2 3 3 3 0 DNA polymerase alpha subunit p180 N terminal EB_dh PF09459.10 gi|159042465|ref|YP_001541717.1| - 1.1e-77 261.4 0.0 1.3e-77 261.2 0.0 1.0 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Rieske PF00355.26 gi|159042466|ref|YP_001541718.1| - 5.2e-12 45.6 0.0 9.3e-12 44.7 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|159042466|ref|YP_001541718.1| - 0.043 13.7 0.5 0.043 13.7 0.5 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.6 gi|159042467|ref|YP_001541719.1| - 1.1e-44 152.5 4.8 1.1e-44 152.5 4.8 3.0 2 1 1 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|159042467|ref|YP_001541719.1| - 1.2e-19 70.8 11.1 1.2e-19 70.8 11.1 2.1 2 0 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|159042467|ref|YP_001541719.1| - 0.0057 16.9 3.7 0.0057 16.9 3.7 3.0 3 1 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD TrbC PF04956.13 gi|159042467|ref|YP_001541719.1| - 0.086 13.1 9.8 1.9 8.8 1.7 3.7 3 0 0 3 3 3 0 TrbC/VIRB2 family ECH_1 PF00378.20 gi|159042468|ref|YP_001541720.1| - 1.6e-16 60.4 0.0 2e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|159042468|ref|YP_001541720.1| - 3.8e-12 46.4 0.0 4.5e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Glu_cyclase_2 PF05096.12 gi|159042468|ref|YP_001541720.1| - 0.17 11.3 0.4 0.24 10.8 0.4 1.1 1 0 0 1 1 1 0 Glutamine cyclotransferase DUF4382 PF14321.6 gi|159042469|ref|YP_001541721.1| - 1e-20 74.4 0.0 1.3e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) Vut_1 PF02592.15 gi|159042470|ref|YP_001541722.1| - 3.9e-22 79.2 5.9 3.9e-22 79.2 5.9 2.0 2 0 0 2 2 2 1 Putative vitamin uptake transporter PEPcase_2 PF14010.6 gi|159042471|ref|YP_001541723.1| - 8.2e-205 681.0 0.0 9.2e-205 680.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Peptidase_M30 PF10460.9 gi|159042471|ref|YP_001541723.1| - 0.027 13.4 0.0 0.052 12.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase M30 HMGL-like PF00682.19 gi|159042472|ref|YP_001541724.1| - 1.5e-31 109.9 0.0 2.4e-31 109.3 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Acyl-CoA_dh_1 PF00441.24 gi|159042473|ref|YP_001541725.1| - 1.4e-36 126.0 1.3 2.7e-36 125.0 1.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|159042473|ref|YP_001541725.1| - 1.5e-23 83.6 0.1 3.7e-23 82.3 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|159042473|ref|YP_001541725.1| - 5.3e-23 81.0 0.0 9.2e-23 80.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|159042473|ref|YP_001541725.1| - 7.8e-16 58.6 0.1 1.2e-15 58.0 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Pilin_N PF07790.11 gi|159042474|ref|YP_001541726.1| - 7.8e-07 29.9 0.9 1.5e-06 29.0 0.9 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Flp1_like PF16982.5 gi|159042474|ref|YP_001541726.1| - 0.069 12.6 0.5 0.11 11.9 0.5 1.3 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain Kelch_6 PF13964.6 gi|159042474|ref|YP_001541726.1| - 0.12 12.7 1.3 0.38 11.1 0.5 2.3 1 1 1 2 2 2 0 Kelch motif Vpu PF00558.19 gi|159042474|ref|YP_001541726.1| - 0.52 10.1 1.4 0.81 9.5 1.4 1.2 1 0 0 1 1 1 0 Vpu protein DUF2749 PF10907.8 gi|159042474|ref|YP_001541726.1| - 4.6 7.5 6.2 14 6.0 4.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) TMP_2 PF06791.13 gi|159042475|ref|YP_001541727.1| - 0.033 13.9 0.6 0.033 13.9 0.6 1.7 2 0 0 2 2 2 0 Prophage tail length tape measure protein DUF5337 PF17272.2 gi|159042475|ref|YP_001541727.1| - 0.1 12.4 1.7 0.27 11.1 1.7 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5337) Mrr_cat PF04471.12 gi|159042476|ref|YP_001541728.1| - 7.1e-08 32.5 0.1 1.4e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|159042476|ref|YP_001541728.1| - 1.6e-05 25.0 0.1 2.9e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NucS PF01939.16 gi|159042476|ref|YP_001541728.1| - 0.00024 20.5 0.2 0.00034 20.0 0.2 1.2 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 gi|159042476|ref|YP_001541728.1| - 0.12 12.6 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) MlaD PF02470.20 gi|159042476|ref|YP_001541728.1| - 0.2 12.0 1.0 0.46 10.8 0.8 1.6 1 1 0 1 1 1 0 MlaD protein MazE_antitoxin PF04014.18 gi|159042477|ref|YP_001541729.1| - 0.035 14.0 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin CDP-OH_P_transf PF01066.21 gi|159042479|ref|YP_001541731.1| - 5.6e-11 43.1 0.8 5.6e-11 43.1 0.8 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PadR PF03551.14 gi|159042480|ref|YP_001541732.1| - 9.3e-12 44.7 0.4 1.3e-11 44.3 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|159042480|ref|YP_001541732.1| - 7.5e-05 23.1 0.0 0.00012 22.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|159042480|ref|YP_001541732.1| - 0.012 15.3 0.1 0.019 14.7 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF505 PF04458.12 gi|159042480|ref|YP_001541732.1| - 0.021 13.2 0.1 0.023 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TrmB PF01978.19 gi|159042480|ref|YP_001541732.1| - 0.03 14.2 0.4 0.1 12.5 0.4 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|159042480|ref|YP_001541732.1| - 0.098 12.8 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Ribosomal_S19e PF01090.19 gi|159042481|ref|YP_001541733.1| - 1.3e-47 161.0 0.0 1.4e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|159042481|ref|YP_001541733.1| - 0.00012 21.9 0.0 0.0046 16.8 0.0 2.3 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|159042481|ref|YP_001541733.1| - 0.005 16.8 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_CodY PF08222.11 gi|159042481|ref|YP_001541733.1| - 0.015 14.8 0.1 0.027 14.0 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_12 PF08461.10 gi|159042481|ref|YP_001541733.1| - 0.019 14.9 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Mrr_N PF14338.6 gi|159042481|ref|YP_001541733.1| - 0.11 12.7 0.0 0.46 10.7 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain HemN_C PF06969.16 gi|159042481|ref|YP_001541733.1| - 0.12 12.4 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain PBP PF01161.20 gi|159042482|ref|YP_001541734.1| - 1.8e-37 128.6 0.0 2.1e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Ribosomal_L1 PF00687.21 gi|159042483|ref|YP_001541735.1| - 3.6e-45 154.2 0.1 4.3e-45 154.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family PMT2_N PF17987.1 gi|159042483|ref|YP_001541735.1| - 0.036 14.3 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoethanolamine N-methyltransferase 2 N-terminal UPF0126 PF03458.13 gi|159042484|ref|YP_001541736.1| - 4.8e-45 151.3 17.3 4.2e-24 84.2 3.7 2.3 2 0 0 2 2 2 2 UPF0126 domain EamA PF00892.20 gi|159042484|ref|YP_001541736.1| - 5.9 7.1 16.0 0.26 11.5 2.3 2.6 1 1 0 2 2 2 0 EamA-like transporter family Ribosomal_L22 PF00237.19 gi|159042485|ref|YP_001541737.1| - 2.2e-22 79.2 0.0 3e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S7 PF00177.21 gi|159042486|ref|YP_001541738.1| - 5.3e-42 143.0 0.2 7e-42 142.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Metallophos PF00149.28 gi|159042487|ref|YP_001541739.1| - 5e-10 40.2 0.3 2.1e-09 38.2 0.3 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|159042487|ref|YP_001541739.1| - 7.3e-10 39.3 0.0 2.1e-08 34.6 0.0 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|159042487|ref|YP_001541739.1| - 0.00011 21.7 3.8 0.072 12.4 0.0 3.1 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily RNA_pol_Rpb1_6 PF04992.14 gi|159042487|ref|YP_001541739.1| - 0.051 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 6 ATPase_2 PF01637.18 gi|159042488|ref|YP_001541740.1| - 8.2e-18 65.2 0.2 1.5e-17 64.3 0.2 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|159042488|ref|YP_001541740.1| - 4.1e-09 36.6 0.1 0.00075 19.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|159042488|ref|YP_001541740.1| - 3.6e-07 30.7 0.0 6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|159042488|ref|YP_001541740.1| - 5.6e-05 23.4 0.0 0.00023 21.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|159042488|ref|YP_001541740.1| - 0.0036 17.7 0.0 0.011 16.2 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Baculo_PEP_C PF04513.12 gi|159042488|ref|YP_001541740.1| - 0.033 14.2 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF815 PF05673.13 gi|159042488|ref|YP_001541740.1| - 0.12 11.5 0.0 0.44 9.7 0.0 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF815) SoxE PF06525.11 gi|159042490|ref|YP_001541742.1| - 9e-07 28.5 4.8 9e-07 28.5 4.8 2.5 2 1 0 2 2 2 1 Sulfocyanin (SoxE) domain Copper-bind PF00127.20 gi|159042490|ref|YP_001541742.1| - 0.00066 20.1 0.9 0.0094 16.4 0.0 2.9 2 1 1 3 3 3 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.14 gi|159042490|ref|YP_001541742.1| - 0.0013 18.4 2.7 0.029 14.1 0.0 2.9 3 1 0 3 3 3 1 Multicopper oxidase FSA_C PF10479.9 gi|159042490|ref|YP_001541742.1| - 0.0087 14.2 7.2 0.011 13.9 7.2 1.1 1 0 0 1 1 1 1 Fragile site-associated protein C-terminus Cu-oxidase_3 PF07732.15 gi|159042490|ref|YP_001541742.1| - 0.018 15.0 0.3 0.51 10.4 0.1 2.6 2 0 0 2 2 2 0 Multicopper oxidase Shisa PF13908.6 gi|159042490|ref|YP_001541742.1| - 0.079 13.2 7.7 0.13 12.5 7.7 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator GHBP PF12772.7 gi|159042490|ref|YP_001541742.1| - 0.16 11.4 6.3 0.22 11.0 6.3 1.1 1 0 0 1 1 1 0 Growth hormone receptor binding SecD-TM1 PF13721.6 gi|159042490|ref|YP_001541742.1| - 0.32 11.5 2.0 0.64 10.5 2.0 1.4 1 0 0 1 1 1 0 SecD export protein N-terminal TM region Mucin PF01456.17 gi|159042490|ref|YP_001541742.1| - 0.9 9.5 27.9 1.5 8.8 27.9 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF2897 PF11446.8 gi|159042490|ref|YP_001541742.1| - 1.5 8.8 3.4 2.7 8.0 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) COX2 PF00116.20 gi|159042491|ref|YP_001541743.1| - 0.098 12.5 3.6 0.79 9.6 0.0 2.7 1 1 2 3 3 3 0 Cytochrome C oxidase subunit II, periplasmic domain MerT PF02411.15 gi|159042491|ref|YP_001541743.1| - 0.5 10.4 5.4 0.091 12.8 0.7 2.1 3 0 0 3 3 3 0 MerT mercuric transport protein COX1 PF00115.20 gi|159042492|ref|YP_001541744.1| - 3.1e-65 220.7 62.8 3.1e-65 220.7 62.8 1.5 1 1 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I LZ_Tnp_IS481 PF13011.6 gi|159042492|ref|YP_001541744.1| - 0.015 15.8 0.0 0.11 13.0 0.0 2.3 3 0 0 3 3 3 0 leucine-zipper of insertion element IS481 Rieske PF00355.26 gi|159042493|ref|YP_001541745.1| - 2.7e-12 46.4 0.1 4.8e-12 45.7 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|159042493|ref|YP_001541745.1| - 0.0084 15.9 0.4 0.0084 15.9 0.4 2.8 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.10 gi|159042493|ref|YP_001541745.1| - 0.018 15.1 0.0 0.057 13.5 0.0 2.0 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Cytochrom_B_N_2 PF13631.6 gi|159042494|ref|YP_001541746.1| - 1.2e-47 162.0 8.9 1.8e-47 161.5 3.6 2.4 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|159042494|ref|YP_001541746.1| - 2.1e-22 79.9 10.6 2.1e-22 79.9 10.6 1.8 2 0 0 2 2 2 1 Cytochrome b/b6/petB DUF4405 PF14358.6 gi|159042494|ref|YP_001541746.1| - 8.3e-06 26.3 11.4 0.012 16.2 3.4 3.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4405) Cytochrom_B_C PF00032.17 gi|159042494|ref|YP_001541746.1| - 0.00025 21.3 2.2 0.00025 21.3 2.2 3.7 5 1 1 6 6 6 1 Cytochrome b(C-terminal)/b6/petD DUF420 PF04238.12 gi|159042494|ref|YP_001541746.1| - 0.19 12.0 0.1 0.19 12.0 0.1 3.9 4 2 1 5 5 5 0 Protein of unknown function (DUF420) Fer4_10 PF13237.6 gi|159042495|ref|YP_001541747.1| - 2.6e-07 30.7 6.9 4.1e-07 30.0 6.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|159042495|ref|YP_001541747.1| - 7.9e-06 26.4 5.4 7.9e-06 26.4 5.4 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|159042495|ref|YP_001541747.1| - 2.6e-05 24.1 9.2 0.032 14.3 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|159042495|ref|YP_001541747.1| - 0.00014 21.9 5.5 0.00029 20.9 5.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|159042495|ref|YP_001541747.1| - 0.0014 18.6 7.3 0.21 11.8 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|159042495|ref|YP_001541747.1| - 0.0049 17.0 0.9 0.0095 16.0 0.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|159042495|ref|YP_001541747.1| - 0.0095 15.7 13.4 0.092 12.6 0.8 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|159042495|ref|YP_001541747.1| - 0.013 15.7 4.7 0.03 14.4 4.7 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|159042495|ref|YP_001541747.1| - 0.18 12.4 8.3 15 6.2 8.4 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|159042495|ref|YP_001541747.1| - 0.27 12.2 9.8 1.6 9.7 0.4 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|159042495|ref|YP_001541747.1| - 0.45 10.3 6.5 0.075 12.8 1.4 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|159042495|ref|YP_001541747.1| - 0.67 10.2 2.7 1.5 9.1 2.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|159042495|ref|YP_001541747.1| - 2.2 9.0 10.7 5.5 7.8 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Thiolase_N PF00108.23 gi|159042496|ref|YP_001541748.1| - 2.3e-76 256.6 0.0 3.1e-76 256.2 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|159042496|ref|YP_001541748.1| - 1.4e-40 137.8 0.2 2.9e-40 136.7 0.0 1.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|159042496|ref|YP_001541748.1| - 3.3e-06 26.9 0.2 1.6e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain tRNA-synt_1b PF00579.25 gi|159042497|ref|YP_001541749.1| - 2e-26 93.0 0.0 1.6e-25 90.1 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) CxxCxxCC PF03692.15 gi|159042498|ref|YP_001541750.1| - 6.6e-18 65.2 1.5 9.1e-18 64.7 1.5 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|159042498|ref|YP_001541750.1| - 0.076 12.8 0.1 0.076 12.8 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) PsbH PF00737.20 gi|159042498|ref|YP_001541750.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein Ribosomal_S26e PF01283.19 gi|159042499|ref|YP_001541751.1| - 5.4e-32 110.4 4.2 6.8e-32 110.1 4.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.17 gi|159042499|ref|YP_001541751.1| - 0.00087 19.2 0.4 0.4 10.6 0.0 2.3 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger zf-RING_7 PF02591.15 gi|159042499|ref|YP_001541751.1| - 0.031 14.4 0.5 0.093 12.9 0.1 2.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|159042499|ref|YP_001541751.1| - 0.27 10.7 2.8 0.76 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|159042499|ref|YP_001541751.1| - 0.57 9.8 1.6 0.64 9.7 0.1 1.8 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger CLIP1_ZNF PF16641.5 gi|159042499|ref|YP_001541751.1| - 2.2 8.2 7.8 1.1 9.2 0.6 2.3 2 0 0 2 2 2 0 CLIP1 zinc knuckle HALZ PF02183.18 gi|159042500|ref|YP_001541752.1| - 4.8e-05 23.5 4.4 0.41 10.9 0.1 3.5 2 1 1 3 3 3 2 Homeobox associated leucine zipper KIP1 PF07765.12 gi|159042500|ref|YP_001541752.1| - 0.0019 18.3 0.4 0.0071 16.4 0.2 2.0 2 0 0 2 2 2 1 KIP1-like protein PI3K_P85_iSH2 PF16454.5 gi|159042500|ref|YP_001541752.1| - 0.16 11.6 3.5 0.3 10.7 1.7 2.2 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Mod_r PF07200.13 gi|159042500|ref|YP_001541752.1| - 0.16 12.1 3.1 14 5.8 0.0 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein CLZ PF16526.5 gi|159042500|ref|YP_001541752.1| - 0.17 12.3 0.9 7.4 7.0 0.0 2.6 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels IFT57 PF10498.9 gi|159042500|ref|YP_001541752.1| - 6.2 5.7 7.8 16 4.3 2.8 2.3 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 FR47 PF08445.10 gi|159042502|ref|YP_001541754.1| - 9.9e-14 51.1 0.1 2.6e-13 49.7 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|159042502|ref|YP_001541754.1| - 5.5e-12 46.0 0.0 1.3e-11 44.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|159042502|ref|YP_001541754.1| - 4.1e-09 36.4 0.0 6.4e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|159042502|ref|YP_001541754.1| - 1.4e-05 24.8 0.0 2.3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_7 PF13508.7 gi|159042502|ref|YP_001541754.1| - 0.00012 22.4 0.0 0.00022 21.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|159042502|ref|YP_001541754.1| - 0.015 15.5 0.0 0.035 14.3 0.0 1.6 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_15 PF17013.5 gi|159042502|ref|YP_001541754.1| - 0.016 14.7 0.1 0.17 11.3 0.0 2.3 2 1 1 3 3 3 0 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|159042502|ref|YP_001541754.1| - 0.021 15.5 0.0 0.034 14.8 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|159042502|ref|YP_001541754.1| - 0.1 12.6 0.0 0.61 10.2 0.0 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Hist_deacetyl PF00850.19 gi|159042503|ref|YP_001541755.1| - 1.2e-65 222.0 0.0 1.8e-65 221.4 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain Robl_LC7 PF03259.17 gi|159042504|ref|YP_001541756.1| - 0.033 14.0 0.0 0.05 13.4 0.0 1.5 1 1 0 1 1 1 0 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|159042504|ref|YP_001541756.1| - 0.081 12.7 1.2 0.21 11.4 1.2 1.7 1 1 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting IF-2B PF01008.17 gi|159042505|ref|YP_001541757.1| - 4.3e-12 45.8 0.3 9.8e-10 38.1 0.3 2.5 1 1 0 1 1 1 1 Initiation factor 2 subunit family UDPG_MGDP_dh_N PF03721.14 gi|159042506|ref|YP_001541758.1| - 4.6e-28 98.1 0.1 9.4e-28 97.1 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|159042506|ref|YP_001541758.1| - 1.8e-24 85.8 0.0 3.9e-24 84.7 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|159042506|ref|YP_001541758.1| - 1.1e-21 77.2 0.0 4.4e-21 75.3 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 gi|159042506|ref|YP_001541758.1| - 8.8e-06 25.2 0.1 0.011 15.1 0.0 2.8 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|159042506|ref|YP_001541758.1| - 4.2e-05 23.5 0.0 0.00015 21.8 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|159042506|ref|YP_001541758.1| - 0.00017 22.1 0.1 0.9 10.2 0.0 3.5 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|159042506|ref|YP_001541758.1| - 0.00024 21.3 0.0 0.011 15.9 0.0 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|159042506|ref|YP_001541758.1| - 0.00042 20.3 0.0 0.033 14.2 0.0 2.5 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|159042506|ref|YP_001541758.1| - 0.001 18.4 0.3 0.0031 16.8 0.1 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|159042506|ref|YP_001541758.1| - 0.025 14.9 1.2 0.46 10.8 0.1 3.3 4 0 0 4 4 4 0 TrkA-N domain ApbA PF02558.16 gi|159042506|ref|YP_001541758.1| - 0.025 14.2 0.2 0.064 12.9 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 gi|159042506|ref|YP_001541758.1| - 0.048 13.1 0.0 0.083 12.3 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Rossmann-like PF10727.9 gi|159042506|ref|YP_001541758.1| - 0.064 13.1 0.1 0.68 9.8 0.0 2.4 3 0 0 3 3 3 0 Rossmann-like domain THUMP PF02926.17 gi|159042507|ref|YP_001541759.1| - 9.5e-15 55.0 1.4 1.1e-14 54.7 1.4 1.1 1 0 0 1 1 1 1 THUMP domain Ribosomal_L21e PF01157.18 gi|159042508|ref|YP_001541760.1| - 6.8e-26 90.1 0.0 8.1e-26 89.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L21e RHH_1 PF01402.21 gi|159042510|ref|YP_001541762.1| - 7.9e-13 47.8 0.9 1.1e-12 47.4 0.9 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|159042510|ref|YP_001541762.1| - 0.0035 17.5 0.0 0.0038 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|159042510|ref|YP_001541762.1| - 0.088 12.7 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB TFIIE_alpha PF02002.17 gi|159042511|ref|YP_001541763.1| - 0.019 14.8 0.2 0.033 14.0 0.2 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit COX5A PF02284.16 gi|159042511|ref|YP_001541763.1| - 0.019 15.0 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Va HTH_27 PF13463.6 gi|159042511|ref|YP_001541763.1| - 0.031 14.8 0.0 0.059 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFA2_Winged_2 PF18121.1 gi|159042511|ref|YP_001541763.1| - 0.078 12.7 0.2 0.4 10.4 0.1 2.1 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 FlgI PF02119.16 gi|159042511|ref|YP_001541763.1| - 0.087 11.7 0.1 0.097 11.6 0.1 1.2 1 0 0 1 1 1 0 Flagellar P-ring protein Flavi_capsid PF01003.19 gi|159042511|ref|YP_001541763.1| - 0.094 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Flavivirus capsid protein C FeoC PF09012.10 gi|159042511|ref|YP_001541763.1| - 0.14 12.3 0.3 1.7 8.8 0.0 2.5 1 1 1 3 3 3 0 FeoC like transcriptional regulator Thioredoxin_4 PF13462.6 gi|159042512|ref|YP_001541764.1| - 2.6e-07 30.9 0.0 5.2e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|159042512|ref|YP_001541764.1| - 5.6e-06 26.8 0.0 1.9e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|159042512|ref|YP_001541764.1| - 0.0013 18.6 0.1 0.04 13.7 0.0 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain YqgF PF14639.6 gi|159042513|ref|YP_001541765.1| - 0.0084 15.9 0.2 0.015 15.0 0.2 1.4 1 1 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 ComFB PF10719.9 gi|159042513|ref|YP_001541765.1| - 0.056 13.5 0.2 0.53 10.4 0.1 2.3 2 0 0 2 2 2 0 Late competence development protein ComFB tRNA-synt_1 PF00133.22 gi|159042514|ref|YP_001541766.1| - 5.2e-64 216.5 0.0 3.6e-63 213.8 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|159042514|ref|YP_001541766.1| - 8.2e-23 80.8 0.3 5.5e-10 38.5 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|159042514|ref|YP_001541766.1| - 1.2e-21 77.3 0.4 3.2e-21 75.9 0.4 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|159042514|ref|YP_001541766.1| - 3.8e-13 49.4 0.1 5.3e-08 32.6 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|159042514|ref|YP_001541766.1| - 7.6e-08 32.1 0.1 2.9e-06 26.9 0.0 2.4 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|159042514|ref|YP_001541766.1| - 0.0021 17.0 1.2 0.0033 16.4 0.0 1.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) CxxCxxCC PF03692.15 gi|159042515|ref|YP_001541767.1| - 7.5e-08 33.0 0.7 1.1e-07 32.4 0.7 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain RibD_C PF01872.17 gi|159042516|ref|YP_001541768.1| - 3e-34 118.6 0.0 3.7e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF359 PF04019.12 gi|159042517|ref|YP_001541769.1| - 1.6e-26 92.4 0.0 2.2e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Aminotran_1_2 PF00155.21 gi|159042518|ref|YP_001541770.1| - 3.2e-42 145.0 0.0 3.7e-42 144.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|159042518|ref|YP_001541770.1| - 9.7e-14 51.0 0.0 1.5e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|159042518|ref|YP_001541770.1| - 0.00032 20.1 0.0 0.0007 19.0 0.0 1.6 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|159042518|ref|YP_001541770.1| - 0.045 13.0 0.0 0.071 12.4 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase PhoU_div PF01865.16 gi|159042519|ref|YP_001541771.1| - 1.3e-16 60.6 8.3 1.7e-16 60.2 8.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PHO4 PF01384.20 gi|159042520|ref|YP_001541772.1| - 1.3e-13 50.8 28.6 2e-12 46.9 28.6 2.1 1 1 0 1 1 1 1 Phosphate transporter family bact-PGI_C PF10432.9 gi|159042521|ref|YP_001541773.1| - 1.5e-37 129.0 0.0 2.4e-37 128.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|159042521|ref|YP_001541773.1| - 2e-06 27.7 0.6 0.0004 20.3 0.1 3.1 2 1 0 2 2 2 1 SIS domain UPF0227 PF05728.12 gi|159042521|ref|YP_001541773.1| - 0.031 14.2 0.7 0.52 10.2 0.1 2.4 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0227) Glyco_trans_1_4 PF13692.6 gi|159042521|ref|YP_001541773.1| - 0.11 12.9 0.1 0.62 10.5 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 MFS_1 PF07690.16 gi|159042522|ref|YP_001541774.1| - 2.3e-50 171.5 77.9 7.2e-45 153.4 45.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|159042522|ref|YP_001541774.1| - 3.5e-08 32.7 34.4 4.3e-07 29.1 11.7 3.5 2 1 1 3 3 3 3 Sugar (and other) transporter OATP PF03137.20 gi|159042522|ref|YP_001541774.1| - 1.6e-06 26.8 4.2 1.6e-06 26.8 4.2 2.7 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family NADHdh_A3 PF14987.6 gi|159042522|ref|YP_001541774.1| - 0.21 11.9 1.5 3.3 8.1 0.1 2.8 2 0 0 2 2 2 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 Gram_pos_anchor PF00746.21 gi|159042522|ref|YP_001541774.1| - 3.1 7.8 0.0 3.1 7.8 0.0 5.9 8 1 0 8 8 8 0 LPXTG cell wall anchor motif MAF_flag10 PF01973.18 gi|159042523|ref|YP_001541775.1| - 2.2e-10 40.5 0.0 3.2e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Glycos_transf_2 PF00535.26 gi|159042524|ref|YP_001541776.1| - 1.4e-20 73.8 0.0 2e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|159042524|ref|YP_001541776.1| - 9.2e-07 29.4 0.0 1.3e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_3 PF13641.6 gi|159042524|ref|YP_001541776.1| - 2.1e-06 27.8 0.0 2.9e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|159042524|ref|YP_001541776.1| - 2.6e-05 24.7 0.0 4.3e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.23 gi|159042524|ref|YP_001541776.1| - 0.0008 19.1 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase DUF1158 PF06643.11 gi|159042524|ref|YP_001541776.1| - 1.6 9.3 5.4 6.2 7.4 5.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1158) Fe-ADH_2 PF13685.6 gi|159042525|ref|YP_001541777.1| - 9.9e-66 222.0 1.7 1.2e-65 221.7 1.7 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|159042525|ref|YP_001541777.1| - 6.8e-25 87.7 0.5 7.7e-24 84.2 0.5 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase UBA PF00627.31 gi|159042525|ref|YP_001541777.1| - 0.0098 15.8 0.8 0.27 11.2 0.0 3.0 2 1 1 3 3 3 1 UBA/TS-N domain tRNA-synt_2b PF00587.25 gi|159042526|ref|YP_001541778.1| - 8.4e-25 87.8 0.2 1.5e-24 86.9 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|159042526|ref|YP_001541778.1| - 1.7e-24 85.7 0.0 3.3e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|159042526|ref|YP_001541778.1| - 2.2e-12 47.0 0.0 3e-11 43.4 0.0 2.3 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal PmbA_TldD PF01523.16 gi|159042527|ref|YP_001541779.1| - 2.4e-55 188.4 0.1 3.1e-55 188.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ham1p_like PF01725.16 gi|159042528|ref|YP_001541780.1| - 5.1e-46 156.9 0.0 5.8e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Phage_holin_3_6 PF07332.11 gi|159042529|ref|YP_001541781.1| - 3.7e-05 23.7 1.5 4.8e-05 23.4 1.5 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4574 PF15141.6 gi|159042529|ref|YP_001541781.1| - 0.0023 17.8 0.9 0.024 14.6 0.0 2.0 2 0 0 2 2 2 1 Ubiquinol-cytochrome-c reductase complex assembly factor 3 PIG-P PF08510.12 gi|159042529|ref|YP_001541781.1| - 0.0056 16.6 0.0 0.0062 16.4 0.0 1.1 1 0 0 1 1 1 1 PIG-P T2SSM PF04612.12 gi|159042529|ref|YP_001541781.1| - 0.029 14.4 4.6 2.7 8.0 0.0 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF2614 PF11023.8 gi|159042529|ref|YP_001541781.1| - 0.03 14.4 0.3 0.038 14.1 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF4131 PF13567.6 gi|159042529|ref|YP_001541781.1| - 0.045 13.4 0.1 0.049 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2642 PF10842.8 gi|159042530|ref|YP_001541782.1| - 0.064 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) Cas_csx3 PF09620.10 gi|159042530|ref|YP_001541782.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) Acylphosphatase PF00708.18 gi|159042531|ref|YP_001541783.1| - 8.5e-29 99.8 0.0 9.5e-29 99.6 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Na_Ca_ex PF01699.24 gi|159042532|ref|YP_001541784.1| - 3.3e-15 56.3 39.6 1.2e-09 38.3 14.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein EamA PF00892.20 gi|159042534|ref|YP_001541786.1| - 3.7e-29 101.6 42.2 4e-16 59.4 18.5 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|159042534|ref|YP_001541786.1| - 0.12 11.7 17.4 27 4.0 17.4 2.5 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF655 PF04919.12 gi|159042535|ref|YP_001541787.1| - 2.5e-55 187.2 4.5 3e-55 187.0 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|159042535|ref|YP_001541787.1| - 1.2e-06 28.7 0.3 8e-06 26.0 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|159042535|ref|YP_001541787.1| - 0.02 15.2 0.3 0.11 12.7 0.1 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif MoaE PF02391.17 gi|159042535|ref|YP_001541787.1| - 0.027 14.7 0.0 0.042 14.1 0.0 1.5 1 1 0 1 1 1 0 MoaE protein FliL PF03748.14 gi|159042535|ref|YP_001541787.1| - 0.085 13.4 0.2 0.45 11.1 0.0 2.0 2 0 0 2 2 2 0 Flagellar basal body-associated protein FliL HHH PF00633.23 gi|159042535|ref|YP_001541787.1| - 0.14 12.1 0.1 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|159042536|ref|YP_001541788.1| - 3.5e-12 46.7 0.5 4.9e-12 46.3 0.5 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 SMC_ScpB PF04079.16 gi|159042536|ref|YP_001541788.1| - 0.023 14.3 0.7 1.8 8.2 0.1 2.6 1 1 2 3 3 3 0 Segregation and condensation complex subunit ScpB NIR_SIR_ferr PF03460.17 gi|159042536|ref|YP_001541788.1| - 0.03 14.2 1.0 5 7.1 0.1 3.5 2 1 1 3 3 3 0 Nitrite/Sulfite reductase ferredoxin-like half domain Helicase_C_3 PF13625.6 gi|159042536|ref|YP_001541788.1| - 0.062 13.5 0.0 0.1 12.8 0.0 1.5 1 1 0 1 1 1 0 Helicase conserved C-terminal domain DnaB_2 PF07261.11 gi|159042536|ref|YP_001541788.1| - 0.12 12.1 0.3 0.45 10.3 0.1 2.1 2 2 0 2 2 2 0 Replication initiation and membrane attachment RebB PF11747.8 gi|159042537|ref|YP_001541789.1| - 0.11 12.6 0.1 0.33 11.1 0.1 1.7 1 0 0 1 1 1 0 Killing trait DUF2929 PF11151.8 gi|159042537|ref|YP_001541789.1| - 0.34 11.2 0.1 0.34 11.2 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) Nitrate_red_gam PF02665.14 gi|159042537|ref|YP_001541789.1| - 2.7 7.5 8.2 0.22 11.0 1.9 2.3 2 2 0 2 2 2 0 Nitrate reductase gamma subunit Pyr_redox_2 PF07992.14 gi|159042538|ref|YP_001541790.1| - 3.1e-13 49.6 1.4 1.6e-07 30.8 0.1 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase SO_alpha_A3 PF17806.1 gi|159042538|ref|YP_001541790.1| - 1.4e-10 41.3 0.0 1e-09 38.6 0.0 2.3 3 0 0 3 3 2 1 Sarcosine oxidase A3 domain NAD_binding_8 PF13450.6 gi|159042538|ref|YP_001541790.1| - 1.5e-09 37.9 0.3 4.4e-09 36.4 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|159042538|ref|YP_001541790.1| - 1.4e-07 30.9 0.4 2.2e-07 30.4 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|159042538|ref|YP_001541790.1| - 1.3e-06 28.2 1.0 2.5e-06 27.4 1.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|159042538|ref|YP_001541790.1| - 2.2e-06 28.2 0.6 6.6e-06 26.6 0.6 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|159042538|ref|YP_001541790.1| - 2.8e-06 26.3 0.3 4.5e-06 25.6 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.7 gi|159042538|ref|YP_001541790.1| - 3.2e-06 26.8 1.1 4.4e-06 26.3 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|159042538|ref|YP_001541790.1| - 4.9e-06 26.1 0.1 9.6e-06 25.1 0.1 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|159042538|ref|YP_001541790.1| - 1e-05 25.0 2.1 1.6e-05 24.3 2.1 1.2 1 0 0 1 1 1 1 FAD binding domain Fer2_BFD PF04324.15 gi|159042538|ref|YP_001541790.1| - 1.7e-05 25.0 0.4 0.00056 20.2 0.4 2.4 1 1 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Thi4 PF01946.17 gi|159042538|ref|YP_001541790.1| - 8.8e-05 21.9 0.4 0.00016 21.0 0.4 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|159042538|ref|YP_001541790.1| - 0.00038 19.7 0.1 0.00061 19.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|159042538|ref|YP_001541790.1| - 0.0013 17.8 0.4 0.0013 17.8 0.4 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|159042538|ref|YP_001541790.1| - 0.0031 16.8 0.1 0.0057 16.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|159042538|ref|YP_001541790.1| - 0.008 15.5 0.2 0.021 14.1 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|159042538|ref|YP_001541790.1| - 0.16 11.9 0.4 0.29 11.1 0.4 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|159042538|ref|YP_001541790.1| - 0.32 9.8 0.6 0.47 9.2 0.6 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DAO PF01266.24 gi|159042539|ref|YP_001541791.1| - 6.6e-57 193.7 0.2 7.4e-57 193.5 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|159042539|ref|YP_001541791.1| - 2.8e-08 33.9 0.7 5.5e-08 32.9 0.7 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|159042539|ref|YP_001541791.1| - 1e-07 31.4 3.4 3e-07 29.9 3.4 1.7 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|159042539|ref|YP_001541791.1| - 1.1e-07 31.6 0.1 1.6e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|159042539|ref|YP_001541791.1| - 7.7e-07 28.6 0.7 7.7e-07 28.6 0.7 1.6 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|159042539|ref|YP_001541791.1| - 5.6e-06 25.7 3.9 0.00024 20.3 0.8 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|159042539|ref|YP_001541791.1| - 6.1e-05 22.4 5.9 0.0008 18.7 5.9 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|159042539|ref|YP_001541791.1| - 0.00018 20.9 2.8 0.00035 19.9 2.6 1.6 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|159042539|ref|YP_001541791.1| - 0.0018 17.6 1.6 0.0043 16.4 1.6 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|159042539|ref|YP_001541791.1| - 0.0031 16.8 0.6 0.029 13.6 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|159042539|ref|YP_001541791.1| - 0.0032 18.0 4.4 0.0032 18.0 4.4 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|159042539|ref|YP_001541791.1| - 0.0055 17.1 0.2 0.01 16.3 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding HI0933_like PF03486.14 gi|159042539|ref|YP_001541791.1| - 0.0089 14.8 5.0 0.018 13.7 3.2 1.9 2 0 0 2 2 2 1 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 gi|159042539|ref|YP_001541791.1| - 0.013 15.1 2.1 0.027 14.0 2.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|159042539|ref|YP_001541791.1| - 0.02 14.8 3.1 0.074 12.9 3.2 1.9 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|159042539|ref|YP_001541791.1| - 0.027 13.5 1.4 0.027 13.5 1.4 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.16 gi|159042539|ref|YP_001541791.1| - 0.069 12.8 1.1 0.12 12.1 1.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|159042539|ref|YP_001541791.1| - 0.14 12.1 0.4 0.31 11.0 0.4 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|159042539|ref|YP_001541791.1| - 0.35 9.7 0.7 0.48 9.2 0.7 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Glyco_hydro_12 PF01670.16 gi|159042542|ref|YP_001541794.1| - 1.8e-09 37.9 1.5 2.9e-09 37.2 1.5 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 PARM PF17061.5 gi|159042542|ref|YP_001541794.1| - 0.2 11.7 3.2 0.33 11.0 3.2 1.3 1 0 0 1 1 1 0 PARM Beta-Casp PF10996.8 gi|159042543|ref|YP_001541795.1| - 1e-15 57.9 0.0 1.8e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|159042543|ref|YP_001541795.1| - 2e-14 54.0 0.0 3.6e-14 53.2 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|159042543|ref|YP_001541795.1| - 4.9e-13 48.8 0.6 1e-12 47.8 0.1 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|159042543|ref|YP_001541795.1| - 7.7e-12 45.1 0.0 1.4e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|159042543|ref|YP_001541795.1| - 8e-08 32.0 0.0 2.2e-07 30.6 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|159042543|ref|YP_001541795.1| - 0.017 15.0 0.0 0.059 13.3 0.0 1.9 1 1 1 2 2 2 0 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|159042543|ref|YP_001541795.1| - 0.036 14.3 0.0 0.078 13.2 0.0 1.7 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase TP_methylase PF00590.20 gi|159042544|ref|YP_001541796.1| - 1.4e-33 116.6 0.1 1.7e-33 116.4 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MoCF_biosynth PF00994.24 gi|159042544|ref|YP_001541796.1| - 0.097 12.3 0.0 0.9 9.2 0.0 1.9 1 1 1 2 2 2 0 Probable molybdopterin binding domain FPL PF09758.9 gi|159042545|ref|YP_001541797.1| - 0.14 12.1 0.3 0.3 11.1 0.3 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein AAA_5 PF07728.14 gi|159042546|ref|YP_001541798.1| - 8.6e-13 48.5 0.0 7e-12 45.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|159042546|ref|YP_001541798.1| - 3.6e-08 34.0 0.1 1e-05 26.0 0.1 3.5 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|159042546|ref|YP_001541798.1| - 5.8e-07 30.0 0.1 1.6e-05 25.4 0.0 3.3 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|159042546|ref|YP_001541798.1| - 0.00023 21.5 0.0 0.0018 18.7 0.0 2.3 1 1 0 1 1 1 1 RNA helicase AAA_18 PF13238.6 gi|159042546|ref|YP_001541798.1| - 0.00026 21.6 0.6 0.0087 16.6 0.0 3.1 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|159042546|ref|YP_001541798.1| - 0.00031 20.5 0.1 0.0006 19.6 0.1 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|159042546|ref|YP_001541798.1| - 0.00065 20.0 0.0 0.044 14.0 0.0 3.5 3 1 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|159042546|ref|YP_001541798.1| - 0.002 18.3 0.0 0.0036 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|159042546|ref|YP_001541798.1| - 0.0032 18.0 0.1 0.0093 16.5 0.1 1.8 1 0 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.17 gi|159042546|ref|YP_001541798.1| - 0.0072 16.1 0.0 0.042 13.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|159042546|ref|YP_001541798.1| - 0.018 15.3 0.0 0.032 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|159042546|ref|YP_001541798.1| - 0.021 14.4 0.1 0.059 12.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|159042546|ref|YP_001541798.1| - 0.027 13.9 0.1 0.043 13.2 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|159042546|ref|YP_001541798.1| - 0.048 13.6 0.0 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain TniB PF05621.11 gi|159042546|ref|YP_001541798.1| - 0.059 12.8 0.0 3.3 7.1 0.0 3.2 3 0 0 3 3 3 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|159042546|ref|YP_001541798.1| - 0.065 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|159042546|ref|YP_001541798.1| - 0.072 12.8 0.3 0.2 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|159042546|ref|YP_001541798.1| - 0.09 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|159042546|ref|YP_001541798.1| - 0.12 12.2 0.0 0.42 10.5 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|159042546|ref|YP_001541798.1| - 0.18 11.4 0.1 0.35 10.5 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|159042546|ref|YP_001541798.1| - 0.23 11.9 1.1 0.74 10.2 0.2 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|159042547|ref|YP_001541799.1| - 1.8e-44 151.8 0.0 3.7e-22 78.8 0.0 2.5 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.6 gi|159042547|ref|YP_001541799.1| - 8.9e-07 28.7 0.0 3.2e-06 26.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|159042547|ref|YP_001541799.1| - 1.7e-06 27.5 0.0 3.8e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Rad51 GvpD PF07088.11 gi|159042547|ref|YP_001541799.1| - 8.6e-05 21.3 0.0 0.021 13.4 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|159042547|ref|YP_001541799.1| - 9.7e-05 21.8 0.0 0.00025 20.4 0.0 1.7 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|159042547|ref|YP_001541799.1| - 0.00017 21.4 0.0 0.00034 20.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|159042547|ref|YP_001541799.1| - 0.001 19.4 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|159042547|ref|YP_001541799.1| - 0.0011 19.3 0.0 0.0024 18.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|159042547|ref|YP_001541799.1| - 0.0023 18.0 0.0 0.0039 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain DAP3 PF10236.9 gi|159042547|ref|YP_001541799.1| - 0.0036 16.5 0.0 0.0051 16.0 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 DUF2075 PF09848.9 gi|159042547|ref|YP_001541799.1| - 0.0045 16.3 0.0 0.0061 15.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|159042547|ref|YP_001541799.1| - 0.0064 16.2 0.0 0.031 14.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|159042547|ref|YP_001541799.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|159042547|ref|YP_001541799.1| - 0.093 12.4 0.0 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|159042547|ref|YP_001541799.1| - 0.12 12.9 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|159042547|ref|YP_001541799.1| - 0.12 12.2 0.0 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain RecA PF00154.21 gi|159042547|ref|YP_001541799.1| - 0.17 11.3 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein Epimerase PF01370.21 gi|159042548|ref|YP_001541800.1| - 6.6e-15 55.2 0.0 8.7e-15 54.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|159042548|ref|YP_001541800.1| - 1e-09 37.9 0.0 1.4e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|159042548|ref|YP_001541800.1| - 4.4e-07 30.2 0.1 8e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3Beta_HSD PF01073.19 gi|159042548|ref|YP_001541800.1| - 4.3e-06 25.9 0.0 1e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|159042548|ref|YP_001541800.1| - 0.00098 18.6 0.2 0.0039 16.6 0.2 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|159042548|ref|YP_001541800.1| - 0.0033 16.6 0.0 0.005 16.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|159042548|ref|YP_001541800.1| - 0.012 15.5 0.0 0.041 13.8 0.0 1.9 2 0 0 2 2 2 0 NAD(P)H-binding Shikimate_DH PF01488.20 gi|159042548|ref|YP_001541800.1| - 0.046 13.8 0.1 0.17 11.9 0.1 2.0 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase AbiEi_3 PF11459.8 gi|159042548|ref|YP_001541800.1| - 0.091 12.5 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Pyr_redox PF00070.27 gi|159042548|ref|YP_001541800.1| - 0.15 12.6 0.1 0.29 11.7 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|159042549|ref|YP_001541801.1| - 1.9e-45 155.3 0.0 2.4e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|159042549|ref|YP_001541801.1| - 6.8e-41 139.9 0.0 8.5e-41 139.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|159042549|ref|YP_001541801.1| - 0.00076 19.4 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|159042549|ref|YP_001541801.1| - 0.0055 16.2 0.2 0.017 14.6 0.2 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|159042549|ref|YP_001541801.1| - 0.096 12.0 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) EzrA PF06160.12 gi|159042550|ref|YP_001541802.1| - 1.5e-07 30.0 10.8 1.5e-07 30.0 10.8 1.7 1 1 0 2 2 2 1 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|159042550|ref|YP_001541802.1| - 4e-07 30.1 2.5 0.0036 17.3 0.3 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Occludin_ELL PF07303.13 gi|159042550|ref|YP_001541802.1| - 9.6e-07 29.5 9.4 0.00025 21.7 3.2 3.3 1 1 3 4 4 4 2 Occludin homology domain WXG100 PF06013.12 gi|159042550|ref|YP_001541802.1| - 1.2e-06 28.6 2.5 0.00068 19.8 0.1 3.4 2 1 1 3 3 3 1 Proteins of 100 residues with WXG IFT57 PF10498.9 gi|159042550|ref|YP_001541802.1| - 1.2e-06 27.7 2.9 1e-05 24.7 3.4 1.9 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 V-SNARE_C PF12352.8 gi|159042550|ref|YP_001541802.1| - 1.8e-06 28.1 2.9 0.54 10.6 0.1 5.0 2 1 3 5 5 5 1 Snare region anchored in the vesicle membrane C-terminus BLOC1_2 PF10046.9 gi|159042550|ref|YP_001541802.1| - 4.1e-06 27.0 2.3 0.00087 19.5 0.9 3.4 2 1 1 3 3 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|159042550|ref|YP_001541802.1| - 8.5e-06 26.2 7.1 0.056 13.9 0.1 3.2 1 1 1 2 2 2 2 Protein of unknown function DUF16 Fib_alpha PF08702.10 gi|159042550|ref|YP_001541802.1| - 9.4e-06 25.9 2.6 0.034 14.3 1.6 3.0 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Tropomyosin PF00261.20 gi|159042550|ref|YP_001541802.1| - 1.4e-05 24.6 2.7 1.4e-05 24.6 2.7 1.7 2 0 0 2 2 2 1 Tropomyosin TMPIT PF07851.13 gi|159042550|ref|YP_001541802.1| - 1.7e-05 24.3 3.3 0.0027 17.0 0.9 2.5 2 1 1 3 3 3 2 TMPIT-like protein Phage_GPO PF05929.11 gi|159042550|ref|YP_001541802.1| - 2.9e-05 23.8 2.6 0.014 15.0 1.3 2.2 1 1 1 2 2 2 2 Phage capsid scaffolding protein (GPO) serine peptidase Laminin_II PF06009.12 gi|159042550|ref|YP_001541802.1| - 4.7e-05 23.4 0.2 0.0013 18.7 0.2 2.3 1 1 1 2 2 2 1 Laminin Domain II UPF0242 PF06785.11 gi|159042550|ref|YP_001541802.1| - 6.3e-05 23.2 0.7 0.00012 22.3 0.7 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus RmuC PF02646.16 gi|159042550|ref|YP_001541802.1| - 7e-05 22.1 2.7 0.061 12.5 2.6 2.8 1 1 0 1 1 1 1 RmuC family Apolipoprotein PF01442.18 gi|159042550|ref|YP_001541802.1| - 0.0001 22.2 0.8 0.00035 20.5 0.8 1.8 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain SesA PF17107.5 gi|159042550|ref|YP_001541802.1| - 0.00012 22.3 0.9 0.012 15.8 0.6 3.3 1 1 1 2 2 2 1 N-terminal domain on NACHT_NTPase and P-loop NTPases Exonuc_VII_L PF02601.15 gi|159042550|ref|YP_001541802.1| - 0.00012 21.8 3.7 0.00014 21.5 3.2 1.4 1 1 0 1 1 1 1 Exonuclease VII, large subunit Spc7 PF08317.11 gi|159042550|ref|YP_001541802.1| - 0.00014 20.9 0.2 0.00024 20.1 0.2 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein COG6 PF06419.11 gi|159042550|ref|YP_001541802.1| - 0.00025 19.4 1.5 0.058 11.6 0.2 2.3 1 1 1 2 2 2 2 Conserved oligomeric complex COG6 Baculo_PEP_C PF04513.12 gi|159042550|ref|YP_001541802.1| - 0.00068 19.7 0.0 0.36 10.9 0.1 2.4 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Lipoprotein_7 PF01540.16 gi|159042550|ref|YP_001541802.1| - 0.00078 18.8 3.1 0.0014 18.0 3.1 1.4 1 0 0 1 1 1 1 Adhesin lipoprotein FapA PF03961.13 gi|159042550|ref|YP_001541802.1| - 0.00078 18.2 5.8 0.0015 17.2 3.3 2.3 1 1 0 2 2 2 1 Flagellar Assembly Protein A Tropomyosin_1 PF12718.7 gi|159042550|ref|YP_001541802.1| - 0.00099 19.3 2.8 0.00099 19.3 2.8 2.2 2 1 1 3 3 2 1 Tropomyosin like Sec34 PF04136.15 gi|159042550|ref|YP_001541802.1| - 0.0012 18.8 1.0 0.027 14.4 1.0 2.5 1 1 0 1 1 1 1 Sec34-like family Laminin_I PF06008.14 gi|159042550|ref|YP_001541802.1| - 0.0015 18.3 0.9 0.0015 18.3 0.9 2.0 1 1 0 2 2 1 1 Laminin Domain I DUF2802 PF10975.8 gi|159042550|ref|YP_001541802.1| - 0.0017 18.4 7.1 38 4.5 4.4 5.2 2 2 1 3 3 2 0 Protein of unknown function (DUF2802) Snapin_Pallidin PF14712.6 gi|159042550|ref|YP_001541802.1| - 0.0021 18.4 2.0 0.18 12.2 1.0 3.2 1 1 1 3 3 3 1 Snapin/Pallidin DUF3584 PF12128.8 gi|159042550|ref|YP_001541802.1| - 0.0023 15.5 5.8 0.15 9.6 1.8 1.5 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) NPV_P10 PF05531.12 gi|159042550|ref|YP_001541802.1| - 0.0026 18.2 0.3 1.2 9.6 0.2 3.1 1 1 1 3 3 3 1 Nucleopolyhedrovirus P10 protein Nup54 PF13874.6 gi|159042550|ref|YP_001541802.1| - 0.0031 17.6 4.1 0.009 16.1 4.1 1.9 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 Rab5-bind PF09311.11 gi|159042550|ref|YP_001541802.1| - 0.0035 16.8 5.0 0.0045 16.4 4.5 1.4 1 1 0 1 1 1 1 Rabaptin-like protein YkyA PF10368.9 gi|159042550|ref|YP_001541802.1| - 0.0035 17.0 13.6 0.049 13.3 1.0 3.1 1 1 1 3 3 3 2 Putative cell-wall binding lipoprotein DUF3782 PF12644.7 gi|159042550|ref|YP_001541802.1| - 0.0041 17.2 6.8 0.14 12.3 0.5 3.6 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) DUF3450 PF11932.8 gi|159042550|ref|YP_001541802.1| - 0.0042 16.4 1.2 0.0042 16.4 1.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) CLZ PF16526.5 gi|159042550|ref|YP_001541802.1| - 0.0055 17.0 7.5 0.17 12.3 0.6 3.9 2 1 2 4 4 3 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spectrin PF00435.21 gi|159042550|ref|YP_001541802.1| - 0.0062 17.0 1.3 1.3 9.6 1.3 3.1 1 1 0 1 1 1 1 Spectrin repeat Seryl_tRNA_N PF02403.22 gi|159042550|ref|YP_001541802.1| - 0.0065 16.7 6.5 0.57 10.4 0.9 3.5 2 1 1 3 3 3 2 Seryl-tRNA synthetase N-terminal domain SOAR PF16533.5 gi|159042550|ref|YP_001541802.1| - 0.0066 16.4 5.0 5.4 7.0 0.2 3.6 1 1 2 3 3 3 0 STIM1 Orai1-activating region MAP65_ASE1 PF03999.12 gi|159042550|ref|YP_001541802.1| - 0.007 15.1 4.9 0.011 14.5 4.9 1.3 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) FPP PF05911.11 gi|159042550|ref|YP_001541802.1| - 0.0073 14.6 0.1 0.01 14.1 0.1 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil GAS PF13851.6 gi|159042550|ref|YP_001541802.1| - 0.0075 15.6 6.4 0.12 11.7 3.4 2.3 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding GST_C PF00043.25 gi|159042550|ref|YP_001541802.1| - 0.0084 16.3 0.4 4.7 7.5 0.1 3.7 2 1 1 3 3 2 0 Glutathione S-transferase, C-terminal domain VasL PF12486.8 gi|159042550|ref|YP_001541802.1| - 0.011 15.6 2.3 15 5.4 1.2 4.0 1 1 2 3 3 3 0 Type VI secretion system, EvfB, or VasL TBK1_CCD1 PF18394.1 gi|159042550|ref|YP_001541802.1| - 0.011 15.3 3.2 0.33 10.5 2.1 3.0 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 DASH_Dam1 PF08653.10 gi|159042550|ref|YP_001541802.1| - 0.017 14.9 5.9 11 5.9 0.3 4.6 1 1 2 3 3 3 0 DASH complex subunit Dam1 KxDL PF10241.9 gi|159042550|ref|YP_001541802.1| - 0.017 15.4 9.7 0.27 11.5 3.4 3.5 2 1 1 3 3 2 0 Uncharacterized conserved protein HemX PF04375.14 gi|159042550|ref|YP_001541802.1| - 0.017 14.4 0.0 0.061 12.6 0.0 1.9 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF948 PF06103.11 gi|159042550|ref|YP_001541802.1| - 0.018 15.3 0.0 0.57 10.5 0.0 2.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) APG17 PF04108.12 gi|159042550|ref|YP_001541802.1| - 0.018 14.2 7.9 0.063 12.4 0.3 2.8 1 1 2 3 3 3 0 Autophagy protein Apg17 Dynamitin PF04912.14 gi|159042550|ref|YP_001541802.1| - 0.018 14.4 0.7 2.3 7.5 0.0 2.2 1 1 1 2 2 2 0 Dynamitin FH2 PF02181.23 gi|159042550|ref|YP_001541802.1| - 0.02 14.0 5.8 0.04 13.0 5.3 1.6 1 1 0 1 1 1 0 Formin Homology 2 Domain Prominin PF05478.11 gi|159042550|ref|YP_001541802.1| - 0.021 12.8 0.2 0.029 12.4 0.2 1.2 1 0 0 1 1 1 0 Prominin TACC_C PF05010.14 gi|159042550|ref|YP_001541802.1| - 0.024 14.4 5.0 0.063 13.1 5.0 1.7 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DASH_Duo1 PF08651.10 gi|159042550|ref|YP_001541802.1| - 0.029 14.1 0.2 0.84 9.5 0.1 2.7 1 1 2 3 3 3 0 DASH complex subunit Duo1 Allexi_40kDa PF05549.11 gi|159042550|ref|YP_001541802.1| - 0.033 13.7 0.2 0.1 12.1 0.2 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF3552 PF12072.8 gi|159042550|ref|YP_001541802.1| - 0.033 13.6 11.1 0.73 9.2 1.2 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) TRPM_tetra PF16519.5 gi|159042550|ref|YP_001541802.1| - 0.035 14.2 11.4 0.46 10.6 0.5 3.4 1 1 3 4 4 4 0 Tetramerisation domain of TRPM Med30 PF11315.8 gi|159042550|ref|YP_001541802.1| - 0.036 14.2 9.4 4.8 7.4 1.7 3.7 1 1 2 3 3 3 0 Mediator complex subunit 30 MCPsignal PF00015.21 gi|159042550|ref|YP_001541802.1| - 0.039 13.8 0.0 0.22 11.3 0.0 2.2 2 1 1 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain PI3K_P85_iSH2 PF16454.5 gi|159042550|ref|YP_001541802.1| - 0.04 13.5 9.1 0.18 11.4 6.3 3.0 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Clusterin PF01093.17 gi|159042550|ref|YP_001541802.1| - 0.045 12.8 10.9 0.25 10.3 3.1 2.2 1 1 1 2 2 2 0 Clusterin Nup88 PF10168.9 gi|159042550|ref|YP_001541802.1| - 0.05 11.4 6.5 0.071 10.9 5.9 1.4 1 1 0 1 1 1 0 Nuclear pore component SHE3 PF17078.5 gi|159042550|ref|YP_001541802.1| - 0.062 13.0 5.0 0.22 11.2 5.0 2.1 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 FlaC_arch PF05377.11 gi|159042550|ref|YP_001541802.1| - 0.068 13.6 1.8 5.8 7.4 0.4 3.4 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) YabA PF06156.13 gi|159042550|ref|YP_001541802.1| - 0.069 13.8 5.2 1 10.0 0.1 2.9 1 1 2 3 3 3 0 Initiation control protein YabA DUF2884 PF11101.8 gi|159042550|ref|YP_001541802.1| - 0.074 12.6 5.2 0.27 10.7 5.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) FliD_C PF07195.12 gi|159042550|ref|YP_001541802.1| - 0.075 12.4 4.9 3.2 7.1 2.6 2.6 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF1366 PF07104.11 gi|159042550|ref|YP_001541802.1| - 0.085 12.6 7.3 6 6.6 0.7 3.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1366) Vac_Fusion PF02346.16 gi|159042550|ref|YP_001541802.1| - 0.096 12.3 10.8 12 5.7 0.2 4.7 2 1 4 6 6 5 0 Chordopoxvirus multifunctional envelope protein A27 T3SSipB PF16535.5 gi|159042550|ref|YP_001541802.1| - 0.1 13.1 0.0 1.6 9.2 0.0 2.2 1 1 1 2 2 2 0 Type III cell invasion protein SipB DUF4298 PF14131.6 gi|159042550|ref|YP_001541802.1| - 0.12 12.4 3.5 10 6.1 0.2 3.6 2 1 2 4 4 3 0 Domain of unknown function (DUF4298) DUF1043 PF06295.12 gi|159042550|ref|YP_001541802.1| - 0.12 12.3 0.1 0.85 9.6 0.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) DUF4665 PF15679.5 gi|159042550|ref|YP_001541802.1| - 0.16 12.6 4.2 3.6 8.3 0.8 3.5 2 1 2 4 4 2 0 Domain of unknown function (DUF4665) Jnk-SapK_ap_N PF09744.9 gi|159042550|ref|YP_001541802.1| - 0.18 12.0 7.4 0.16 12.2 4.6 2.3 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF4763 PF15960.5 gi|159042550|ref|YP_001541802.1| - 0.19 11.0 4.6 1.8 7.8 4.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) GCN5L1 PF06320.13 gi|159042550|ref|YP_001541802.1| - 0.22 11.7 2.6 3 8.0 2.1 2.6 1 1 2 3 3 2 0 GCN5-like protein 1 (GCN5L1) Cauli_AT PF03233.13 gi|159042550|ref|YP_001541802.1| - 0.24 11.3 9.1 1.4 8.8 0.2 3.0 2 1 1 3 3 3 0 Aphid transmission protein ISG65-75 PF11727.8 gi|159042550|ref|YP_001541802.1| - 0.27 10.5 0.6 11 5.1 0.3 2.4 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF4047 PF13256.6 gi|159042550|ref|YP_001541802.1| - 0.3 11.3 2.7 13 6.0 0.3 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4047) Sipho_Gp157 PF05565.11 gi|159042550|ref|YP_001541802.1| - 0.32 11.0 7.2 0.41 10.6 3.4 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 Phage_Mu_Gam PF07352.12 gi|159042550|ref|YP_001541802.1| - 0.33 10.9 6.1 0.68 9.8 0.1 2.9 2 1 0 3 3 3 0 Bacteriophage Mu Gam like protein Lebercilin PF15619.6 gi|159042550|ref|YP_001541802.1| - 0.4 10.3 8.9 0.085 12.5 4.2 2.1 2 1 0 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease Peptidase_M75 PF09375.10 gi|159042550|ref|YP_001541802.1| - 0.4 10.1 2.4 15 5.0 2.4 2.9 1 1 0 1 1 1 0 Imelysin Noelin-1 PF12308.8 gi|159042550|ref|YP_001541802.1| - 0.42 10.6 3.3 6.6 6.8 3.3 2.6 1 1 0 1 1 1 0 Neurogenesis glycoprotein Prefoldin_2 PF01920.20 gi|159042550|ref|YP_001541802.1| - 0.46 10.5 7.2 13 5.8 3.8 3.6 2 1 0 2 2 1 0 Prefoldin subunit DUF1351 PF07083.11 gi|159042550|ref|YP_001541802.1| - 0.5 10.1 9.9 8.6 6.1 8.5 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1351) V_ATPase_I PF01496.19 gi|159042550|ref|YP_001541802.1| - 0.55 8.1 9.8 0.74 7.7 9.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Golgin_A5 PF09787.9 gi|159042550|ref|YP_001541802.1| - 0.55 9.7 8.9 0.28 10.6 6.3 1.7 1 1 1 2 2 1 0 Golgin subfamily A member 5 Ferritin-like PF12902.7 gi|159042550|ref|YP_001541802.1| - 0.58 10.0 3.6 6.1 6.6 3.5 2.3 1 1 0 1 1 1 0 Ferritin-like XhlA PF10779.9 gi|159042550|ref|YP_001541802.1| - 0.58 10.4 10.9 0.77 10.0 1.3 3.9 2 1 3 5 5 4 0 Haemolysin XhlA MscS_porin PF12795.7 gi|159042550|ref|YP_001541802.1| - 0.58 9.7 4.6 0.1 12.2 0.9 1.6 2 0 0 2 2 1 0 Mechanosensitive ion channel porin domain L31 PF09784.9 gi|159042550|ref|YP_001541802.1| - 0.61 10.5 5.0 41 4.7 4.9 3.2 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 Syntaxin_2 PF14523.6 gi|159042550|ref|YP_001541802.1| - 0.86 10.0 6.4 13 6.2 6.4 2.7 1 1 0 1 1 1 0 Syntaxin-like protein DUF1465 PF07323.12 gi|159042550|ref|YP_001541802.1| - 1 9.2 4.6 6.3 6.6 0.2 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF1465) DUF4164 PF13747.6 gi|159042550|ref|YP_001541802.1| - 1.2 9.5 13.0 4.9 7.5 0.2 3.4 2 1 2 4 4 3 0 Domain of unknown function (DUF4164) CorA PF01544.18 gi|159042550|ref|YP_001541802.1| - 1.5 8.1 16.3 1.9 7.7 7.9 3.0 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein WASH_WAHD PF11945.8 gi|159042550|ref|YP_001541802.1| - 1.5 8.2 11.8 3.4e+02 0.5 11.1 3.0 1 1 0 1 1 1 0 WAHD domain of WASH complex DUF4795 PF16043.5 gi|159042550|ref|YP_001541802.1| - 1.6 8.3 12.1 2.8e+02 0.9 12.0 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Med3 PF11593.8 gi|159042550|ref|YP_001541802.1| - 1.7 7.7 5.7 7.4 5.7 4.1 2.0 1 1 1 2 2 2 0 Mediator complex subunit 3 fungal ING PF12998.7 gi|159042550|ref|YP_001541802.1| - 3.9 8.1 10.6 20 5.8 6.6 3.3 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding ZapA PF05164.13 gi|159042550|ref|YP_001541802.1| - 4.4 7.8 12.3 58 4.2 1.7 5.5 3 1 3 6 6 4 0 Cell division protein ZapA HalX PF08663.10 gi|159042550|ref|YP_001541802.1| - 5 7.5 17.0 2.3 8.6 0.2 4.7 2 1 2 4 4 3 0 HalX domain DUF3850 PF12961.7 gi|159042551|ref|YP_001541803.1| - 0.014 15.4 0.0 0.022 14.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3850) ASCH PF04266.14 gi|159042551|ref|YP_001541803.1| - 0.17 12.5 0.0 0.2 12.3 0.0 1.2 1 0 0 1 1 1 0 ASCH domain Ribosomal_S28e PF01200.18 gi|159042551|ref|YP_001541803.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S28e AAA_17 PF13207.6 gi|159042552|ref|YP_001541804.1| - 1.5e-11 44.9 0.1 2.2e-11 44.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|159042552|ref|YP_001541804.1| - 2.8e-11 44.1 0.0 3.8e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|159042552|ref|YP_001541804.1| - 4.5e-07 30.1 0.0 7.5e-07 29.4 0.0 1.4 2 0 0 2 2 2 1 AAA domain CoaE PF01121.20 gi|159042552|ref|YP_001541804.1| - 0.00094 18.9 0.0 0.0019 17.9 0.0 1.5 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_28 PF13521.6 gi|159042552|ref|YP_001541804.1| - 0.0012 19.1 0.1 0.0019 18.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|159042552|ref|YP_001541804.1| - 0.0017 17.9 0.0 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ADK PF00406.22 gi|159042552|ref|YP_001541804.1| - 0.015 15.4 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Adenylate kinase APS_kinase PF01583.20 gi|159042552|ref|YP_001541804.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase ATP_bind_2 PF03668.15 gi|159042552|ref|YP_001541804.1| - 0.07 12.4 0.2 0.25 10.6 0.2 1.8 1 1 0 1 1 1 0 P-loop ATPase protein family Torsin PF06309.11 gi|159042552|ref|YP_001541804.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Torsin AAA_30 PF13604.6 gi|159042552|ref|YP_001541804.1| - 0.18 11.5 0.2 0.38 10.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|159042552|ref|YP_001541804.1| - 0.29 11.4 1.3 0.9 9.8 0.6 2.0 1 1 0 2 2 2 0 AAA domain RNA_binding PF01877.17 gi|159042553|ref|YP_001541805.1| - 2.2e-14 53.8 0.2 3.1e-14 53.3 0.2 1.2 1 0 0 1 1 1 1 RNA binding EamA PF00892.20 gi|159042554|ref|YP_001541806.1| - 2.2e-24 86.2 41.8 1.5e-14 54.3 15.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family Ribosomal_S2 PF00318.20 gi|159042555|ref|YP_001541807.1| - 3.1e-23 82.2 0.0 7e-16 58.1 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Caldivirga_maquilingensis_IC_167_uid58711/NC_009954.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Caldivirga_maquilingensis_IC_167_uid58711/NC_009954.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Caldivirga_maquilingensis_IC_167_uid58711/NC_009954.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Caldivirga_maquilingensis_IC_167_uid58711/NC_009954.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 10:50:50 2019 # [ok]