# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4191 PF13829.1 gi|14600380|ref|NP_146894.1| - 3.9 6.5 11.0 5.8 5.9 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) PadR PF03551.9 gi|14600381|ref|NP_146895.1| - 1.9e-22 78.7 0.2 2.4e-22 78.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|14600381|ref|NP_146895.1| - 0.003 17.1 0.1 0.0072 15.9 0.0 1.6 1 1 1 2 2 2 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|14600381|ref|NP_146895.1| - 0.0057 16.6 0.0 0.0099 15.8 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|14600381|ref|NP_146895.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|14600381|ref|NP_146895.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal DUF505 PF04458.7 gi|14600381|ref|NP_146895.1| - 0.019 13.0 0.0 0.022 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_20 PF12840.2 gi|14600381|ref|NP_146895.1| - 0.057 13.2 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Abi PF02517.11 gi|14600382|ref|NP_146896.1| - 2.7e-11 43.4 7.1 2.7e-11 43.4 4.9 2.7 2 1 0 2 2 2 1 CAAX protease self-immunity DUF2232 PF09991.4 gi|14600382|ref|NP_146896.1| - 0.0043 16.0 5.1 0.0043 16.0 3.5 2.9 2 2 0 2 2 2 2 Predicted membrane protein (DUF2232) DUF4401 PF14351.1 gi|118430836|ref|NP_146897.2| - 0.0068 15.4 1.1 0.0085 15.1 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) DUF3816 PF12822.2 gi|118430836|ref|NP_146897.2| - 0.0071 16.2 1.2 0.0085 16.0 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) Glucos_trans_II PF14264.1 gi|118430836|ref|NP_146897.2| - 0.025 13.5 1.3 0.04 12.9 0.9 1.3 1 0 0 1 1 1 0 Glucosyl transferase GtrII O-antigen_lig PF13425.1 gi|118430836|ref|NP_146897.2| - 0.053 13.5 2.6 0.068 13.1 1.8 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Pox_A14 PF05767.7 gi|118430836|ref|NP_146897.2| - 0.061 13.2 1.3 0.11 12.4 0.9 1.4 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 PQQ PF01011.16 gi|118430837|ref|NP_146898.2| - 0.0011 18.3 0.7 0.71 9.5 0.0 4.1 4 1 1 5 5 5 2 PQQ enzyme repeat PQQ_2 PF13360.1 gi|118430837|ref|NP_146898.2| - 0.012 15.0 0.3 0.048 13.1 0.2 2.0 2 0 0 2 2 2 0 PQQ-like domain HMA PF00403.21 gi|118430838|ref|NP_146899.2| - 7.5e-13 48.4 0.1 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain PMSR PF01625.16 gi|118430838|ref|NP_146899.2| - 0.002 18.0 0.5 0.83 9.5 0.0 2.4 2 1 1 3 3 3 2 Peptide methionine sulfoxide reductase AA_permease_2 PF13520.1 gi|118430839|ref|NP_146900.2| - 1.1e-29 103.2 40.3 1.5e-29 102.8 28.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|118430839|ref|NP_146900.2| - 2.8e-25 88.6 40.7 4.1e-25 88.0 28.2 1.3 1 0 0 1 1 1 1 Amino acid permease NTP_transf_2 PF01909.18 gi|118430839|ref|NP_146900.2| - 2.3e-08 34.2 0.0 6.4e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|118430839|ref|NP_146900.2| - 0.0054 16.7 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase beta palm DeoC PF01791.4 gi|118430840|ref|NP_146901.2| - 1.6e-33 115.9 0.0 1.9e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|118430840|ref|NP_146901.2| - 1.8e-05 23.9 0.3 0.00014 21.0 0.2 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Peptidase_C26 PF07722.8 gi|118430840|ref|NP_146901.2| - 0.0041 16.5 0.0 1.7 7.9 0.0 2.1 2 0 0 2 2 2 2 Peptidase C26 PfkB PF00294.19 gi|14600388|ref|NP_146902.1| - 5.2e-62 209.6 0.1 6.8e-62 209.2 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|14600388|ref|NP_146902.1| - 3.4e-09 36.2 0.0 4.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ILVD_EDD PF00920.16 gi|118430841|ref|NP_146903.2| - 3.3e-202 672.5 0.0 3.7e-202 672.3 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family FGGY_N PF00370.16 gi|118430842|ref|NP_146905.2| - 3.6e-41 141.0 0.0 7.7e-41 140.0 0.0 1.5 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|118430842|ref|NP_146905.2| - 3e-28 98.8 0.4 5.5e-28 97.9 0.3 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|118430842|ref|NP_146905.2| - 0.011 14.9 0.1 1.1 8.4 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DUF4445 PF14574.1 gi|118430842|ref|NP_146905.2| - 0.038 12.2 0.2 0.096 10.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4445) Pyridoxal_deC PF00282.14 gi|118430843|ref|NP_146906.2| - 3.6e-29 101.3 0.0 5.4e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|118430843|ref|NP_146906.2| - 4.7e-09 35.4 0.0 2.1e-08 33.3 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|118430843|ref|NP_146906.2| - 2e-07 30.3 0.1 3.4e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|118430843|ref|NP_146906.2| - 1.9e-06 27.1 0.0 1.2e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Acid_PPase PF12689.2 gi|118430844|ref|NP_146907.2| - 5.8e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 1 0 1 1 1 1 Acid Phosphatase NIF PF03031.13 gi|118430844|ref|NP_146907.2| - 0.062 12.9 0.0 0.077 12.6 0.0 1.3 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase TrmB PF01978.14 gi|118430846|ref|NP_146909.2| - 3.5e-27 93.9 0.1 4.8e-27 93.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|118430846|ref|NP_146909.2| - 5.7e-05 22.7 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|118430846|ref|NP_146909.2| - 0.00027 20.4 0.0 0.00047 19.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|118430846|ref|NP_146909.2| - 0.012 15.0 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|118430846|ref|NP_146909.2| - 0.021 14.5 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|118430846|ref|NP_146909.2| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PPDK_N PF01326.14 gi|14600396|ref|NP_146910.1| - 3.1e-98 328.8 0.0 4.9e-98 328.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|14600397|ref|NP_146911.1| - 1.3e-25 88.7 0.0 2.1e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|14600397|ref|NP_146911.1| - 0.048 13.4 0.0 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal MFS_1 PF07690.11 gi|118430847|ref|NP_146912.2| - 5.7e-59 199.5 64.8 1.1e-48 165.7 28.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|118430847|ref|NP_146912.2| - 0.0037 15.7 38.6 0.033 12.6 16.7 3.7 2 1 1 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|118430847|ref|NP_146912.2| - 0.087 12.6 0.2 0.087 12.6 0.1 3.4 4 0 0 4 4 4 0 MFS_1 like family DUF2370 PF10176.4 gi|118430847|ref|NP_146912.2| - 0.1 11.9 0.6 0.21 10.8 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) PEPCK_ATP PF01293.15 gi|118430848|ref|NP_146913.2| - 4.4e-81 272.7 0.0 1.4e-80 271.1 0.0 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.1 gi|118430848|ref|NP_146913.2| - 0.0028 17.5 0.0 0.005 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118430848|ref|NP_146913.2| - 0.11 13.3 0.0 0.38 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|118430848|ref|NP_146913.2| - 0.2 11.2 0.0 1.1 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain SBP_bac_1 PF01547.20 gi|118430849|ref|NP_146914.2| - 1.8e-32 113.3 8.1 2.4e-32 112.9 5.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|118430849|ref|NP_146914.2| - 3e-24 86.2 2.3 4.2e-24 85.7 1.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|118430849|ref|NP_146914.2| - 0.0004 20.0 0.0 0.032 13.8 0.0 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DivIC PF04977.10 gi|118430849|ref|NP_146914.2| - 0.0087 15.5 0.2 0.019 14.4 0.1 1.5 1 0 0 1 1 1 1 Septum formation initiator IncA PF04156.9 gi|118430849|ref|NP_146914.2| - 0.013 15.0 0.6 0.022 14.3 0.4 1.2 1 0 0 1 1 1 0 IncA protein UPF0118 PF01594.11 gi|118430849|ref|NP_146914.2| - 0.015 14.3 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF20 DUF948 PF06103.6 gi|118430849|ref|NP_146914.2| - 0.025 14.4 0.3 0.061 13.1 0.2 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|118430849|ref|NP_146914.2| - 0.086 12.5 0.9 0.19 11.5 0.6 1.5 1 0 0 1 1 1 0 Laminin Domain II DUF4363 PF14276.1 gi|118430849|ref|NP_146914.2| - 0.12 12.0 0.8 0.25 11.0 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) COG2 PF06148.6 gi|118430849|ref|NP_146914.2| - 0.15 11.9 0.3 0.28 11.0 0.2 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.6 gi|118430849|ref|NP_146914.2| - 0.17 11.8 1.9 0.37 10.7 1.3 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Transposase_22 PF02994.9 gi|118430849|ref|NP_146914.2| - 0.32 9.4 1.8 0.63 8.4 1.3 1.4 1 1 0 1 1 1 0 L1 transposable element BPD_transp_1 PF00528.17 gi|118430850|ref|NP_146915.2| - 1.1e-20 73.9 20.5 1.1e-20 73.9 14.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|118430851|ref|NP_146916.2| - 4.6e-21 75.1 17.3 4.6e-21 75.1 12.0 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|118430852|ref|NP_146917.2| - 2.6e-34 118.4 0.0 3.7e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|118430852|ref|NP_146917.2| - 1.3e-11 44.4 0.0 1.1e-10 41.4 0.0 2.7 3 0 0 3 3 3 1 TOBE domain TOBE_2 PF08402.5 gi|118430852|ref|NP_146917.2| - 5.9e-11 42.2 0.0 2.8e-10 40.0 0.0 2.2 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|118430852|ref|NP_146917.2| - 4.6e-07 30.0 0.0 0.015 15.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|118430852|ref|NP_146917.2| - 0.00041 20.2 0.0 0.00092 19.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|118430852|ref|NP_146917.2| - 0.00047 19.4 0.0 0.0021 17.3 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|118430852|ref|NP_146917.2| - 0.0014 18.6 0.2 0.0032 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|118430852|ref|NP_146917.2| - 0.0031 17.6 0.0 0.0089 16.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118430852|ref|NP_146917.2| - 0.0057 16.8 0.0 0.013 15.7 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|118430852|ref|NP_146917.2| - 0.0059 15.7 0.1 1.4 7.9 0.0 2.2 2 0 0 2 2 2 2 Zeta toxin AAA_23 PF13476.1 gi|118430852|ref|NP_146917.2| - 0.0068 16.7 0.0 0.01 16.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|118430852|ref|NP_146917.2| - 0.012 15.3 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|118430852|ref|NP_146917.2| - 0.014 16.2 0.4 0.047 14.5 0.1 2.2 2 1 0 2 2 1 0 AAA domain AAA_15 PF13175.1 gi|118430852|ref|NP_146917.2| - 0.014 14.4 0.0 0.082 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|118430852|ref|NP_146917.2| - 0.024 14.6 0.0 0.067 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|118430852|ref|NP_146917.2| - 0.028 13.0 0.0 0.036 12.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|118430852|ref|NP_146917.2| - 0.056 12.6 0.0 0.089 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|118430852|ref|NP_146917.2| - 0.079 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|118430852|ref|NP_146917.2| - 0.12 11.8 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain PBP_like_2 PF12849.2 gi|14600404|ref|NP_146918.1| - 1.6e-48 165.5 2.8 2e-48 165.2 1.9 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|14600404|ref|NP_146918.1| - 1.4e-13 51.3 8.2 2.1e-13 50.6 5.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|14600404|ref|NP_146918.1| - 5.1e-07 28.8 0.0 2.9e-06 26.3 0.0 2.3 1 1 0 1 1 1 1 PBP superfamily domain Prenyltrans_1 PF13243.1 gi|14600404|ref|NP_146918.1| - 0.077 13.0 0.0 0.37 10.8 0.0 2.1 3 0 0 3 3 3 0 Prenyltransferase-like BPD_transp_1 PF00528.17 gi|118430853|ref|NP_146919.2| - 6.8e-13 48.5 15.7 6.8e-13 48.5 10.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|14600406|ref|NP_146920.1| - 7.8e-16 58.1 12.3 7.8e-16 58.1 8.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|14600407|ref|NP_146921.1| - 5.3e-36 123.9 0.0 7.2e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14600407|ref|NP_146921.1| - 5e-14 52.9 0.1 3e-07 30.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|14600407|ref|NP_146921.1| - 7.2e-08 31.9 0.0 0.00099 18.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|14600407|ref|NP_146921.1| - 2.1e-05 23.9 0.0 4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|14600407|ref|NP_146921.1| - 2.6e-05 23.4 0.3 0.0076 15.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|14600407|ref|NP_146921.1| - 7e-05 22.8 0.1 0.00029 20.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|14600407|ref|NP_146921.1| - 7.5e-05 22.3 0.1 0.0097 15.6 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain DUF258 PF03193.11 gi|14600407|ref|NP_146921.1| - 0.00054 19.1 0.0 0.00095 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|14600407|ref|NP_146921.1| - 0.00064 19.2 0.1 0.021 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|14600407|ref|NP_146921.1| - 0.0016 19.2 0.0 0.0031 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|14600407|ref|NP_146921.1| - 0.0019 17.6 0.2 0.02 14.3 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|14600407|ref|NP_146921.1| - 0.0029 17.9 0.2 0.0058 16.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|14600407|ref|NP_146921.1| - 0.0039 17.0 0.0 0.005 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|14600407|ref|NP_146921.1| - 0.0041 17.4 0.0 0.011 16.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain Rad17 PF03215.10 gi|14600407|ref|NP_146921.1| - 0.0047 15.6 0.0 0.0069 15.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|14600407|ref|NP_146921.1| - 0.0066 16.5 0.2 0.016 15.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain Adeno_IVa2 PF02456.10 gi|14600407|ref|NP_146921.1| - 0.0087 14.7 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 1 Adenovirus IVa2 protein ABC_ATPase PF09818.4 gi|14600407|ref|NP_146921.1| - 0.0095 14.5 0.2 0.45 9.0 0.1 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MobB PF03205.9 gi|14600407|ref|NP_146921.1| - 0.01 15.5 0.3 0.05 13.3 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|14600407|ref|NP_146921.1| - 0.013 15.0 0.1 0.14 11.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|14600407|ref|NP_146921.1| - 0.017 14.8 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|14600407|ref|NP_146921.1| - 0.024 14.0 0.0 0.067 12.6 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|14600407|ref|NP_146921.1| - 0.03 14.5 0.0 0.68 10.1 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|14600407|ref|NP_146921.1| - 0.044 13.3 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|14600407|ref|NP_146921.1| - 0.05 13.5 0.0 0.44 10.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.12 gi|14600407|ref|NP_146921.1| - 0.058 13.2 0.2 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 RNA12 PF10443.4 gi|14600407|ref|NP_146921.1| - 0.064 11.7 0.3 0.21 10.0 0.0 1.8 2 0 0 2 2 2 0 RNA12 protein AAA_PrkA PF08298.6 gi|14600407|ref|NP_146921.1| - 0.11 11.2 0.0 0.18 10.4 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain NB-ARC PF00931.17 gi|14600407|ref|NP_146921.1| - 0.15 10.8 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain PhoU PF01895.14 gi|14600408|ref|NP_146922.1| - 5.9e-23 81.1 9.9 2e-15 56.9 3.0 2.1 2 0 0 2 2 2 2 PhoU domain PMC2NT PF08066.7 gi|14600408|ref|NP_146922.1| - 0.097 12.9 0.3 0.25 11.6 0.1 1.8 2 0 0 2 2 2 0 PMC2NT (NUC016) domain PsbN PF02468.10 gi|118430854|ref|NP_146923.2| - 0.55 9.8 2.8 1.1 8.8 1.9 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) FAA_hydrolase PF01557.13 gi|118430855|ref|NP_146924.2| - 3.5e-56 190.0 0.0 4.4e-56 189.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family CitMHS PF03600.11 gi|14600412|ref|NP_146926.1| - 7.6e-22 77.3 23.4 1e-21 76.9 15.7 1.6 1 1 1 2 2 2 1 Citrate transporter DctM PF06808.7 gi|14600412|ref|NP_146926.1| - 2.4 6.6 29.9 0.14 10.6 7.9 2.5 2 1 0 2 2 2 0 DctM-like transporters ECH PF00378.15 gi|118430857|ref|NP_146927.2| - 2.8e-45 154.3 0.0 3.1e-45 154.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Pribosyltran PF00156.22 gi|118430859|ref|NP_146931.2| - 4.3e-12 45.8 0.4 8e-12 44.9 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_31 PF13560.1 gi|118430859|ref|NP_146931.2| - 1.6e-06 28.1 2.6 6.5e-06 26.2 1.8 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|118430859|ref|NP_146931.2| - 6e-05 22.8 0.1 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|118430859|ref|NP_146931.2| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UPRTase PF14681.1 gi|118430859|ref|NP_146931.2| - 0.05 12.8 0.1 0.12 11.5 0.0 1.6 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|118430859|ref|NP_146931.2| - 0.055 13.1 1.0 0.1 12.2 0.2 1.9 2 0 0 2 2 2 0 Homeodomain-like domain PRTase_2 PF15609.1 gi|118430859|ref|NP_146931.2| - 0.056 12.7 0.0 0.11 11.8 0.0 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase RepB PF07506.6 gi|118430859|ref|NP_146931.2| - 0.11 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_24 PF13412.1 gi|118430859|ref|NP_146931.2| - 0.15 11.5 0.0 0.32 10.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Bmp PF02608.9 gi|118430860|ref|NP_146932.2| - 1.5e-17 63.3 0.0 2.1e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|118430860|ref|NP_146932.2| - 0.00044 20.0 3.1 0.00044 20.0 2.1 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|118430860|ref|NP_146932.2| - 0.082 12.0 0.3 0.17 11.0 0.2 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CytB6-F_Fe-S PF08802.5 gi|118430860|ref|NP_146932.2| - 2.4 8.2 5.4 0.44 10.5 0.5 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit ABC_tran PF00005.22 gi|14600419|ref|NP_146933.1| - 2.4e-40 137.9 0.0 1.1e-21 77.5 0.0 2.8 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|14600419|ref|NP_146933.1| - 5.2e-09 36.4 0.0 2.1e-05 24.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|14600419|ref|NP_146933.1| - 7.2e-06 25.4 0.2 3.1e-05 23.3 0.1 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|14600419|ref|NP_146933.1| - 3.4e-05 24.2 0.0 5.2e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|14600419|ref|NP_146933.1| - 0.00084 18.7 1.5 0.019 14.3 0.1 2.6 3 0 0 3 3 3 1 AAA domain SMC_N PF02463.14 gi|14600419|ref|NP_146933.1| - 0.0017 17.6 0.0 0.076 12.2 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|14600419|ref|NP_146933.1| - 0.0038 17.2 0.1 0.058 13.3 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain DLIC PF05783.6 gi|14600419|ref|NP_146933.1| - 0.006 15.2 0.1 0.0092 14.6 0.1 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) FeoA PF04023.9 gi|14600419|ref|NP_146933.1| - 0.011 15.7 1.2 0.025 14.5 0.0 2.2 2 1 0 2 2 2 0 FeoA domain AAA_15 PF13175.1 gi|14600419|ref|NP_146933.1| - 0.015 14.3 0.0 0.064 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|14600419|ref|NP_146933.1| - 0.018 14.7 0.3 0.046 13.3 0.2 1.7 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|14600419|ref|NP_146933.1| - 0.025 14.1 1.0 0.04 13.5 0.2 1.6 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|14600419|ref|NP_146933.1| - 0.026 14.4 0.0 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|14600419|ref|NP_146933.1| - 0.028 13.8 0.4 0.37 10.1 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|14600419|ref|NP_146933.1| - 0.054 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|14600419|ref|NP_146933.1| - 0.071 12.5 0.4 0.14 11.5 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|14600419|ref|NP_146933.1| - 0.09 11.6 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|14600419|ref|NP_146933.1| - 0.12 12.5 0.4 0.68 10.0 0.0 2.4 3 0 0 3 3 3 0 AAA domain SbcCD_C PF13558.1 gi|14600419|ref|NP_146933.1| - 0.15 12.0 0.0 21 5.0 0.0 2.4 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|14600419|ref|NP_146933.1| - 0.17 12.3 0.0 0.34 11.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein ABC_ATPase PF09818.4 gi|14600419|ref|NP_146933.1| - 0.19 10.2 2.6 0.33 9.4 0.3 2.2 3 0 0 3 3 3 0 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|14600419|ref|NP_146933.1| - 0.23 10.6 0.1 0.41 9.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BPD_transp_2 PF02653.11 gi|14600420|ref|NP_146934.1| - 1.3e-20 73.4 37.6 1.3e-20 73.4 26.1 1.8 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|118430861|ref|NP_146935.2| - 5.7e-35 120.5 39.6 1e-34 119.7 27.4 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_OmpA PF13436.1 gi|118430861|ref|NP_146935.2| - 2.9 7.5 12.5 9.9 5.8 8.7 1.9 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Nitro_FeMo-Co PF02579.12 gi|118430862|ref|YP_874799.1| - 1.2e-07 31.6 0.0 2.7e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor dUTPase PF00692.14 gi|118430863|ref|NP_146937.2| - 1.6e-11 43.7 0.0 2.4e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 dUTPase Oxidored_molyb PF00174.14 gi|118430865|ref|NP_146939.2| - 1e-38 132.3 0.0 1.3e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_C_asm PF01578.15 gi|14600426|ref|NP_146940.1| - 2e-19 69.9 4.9 2e-19 69.9 3.4 2.0 2 1 0 2 2 2 1 Cytochrome C assembly protein BCLP PF12304.3 gi|14600426|ref|NP_146940.1| - 0.069 12.5 1.0 0.18 11.2 0.7 1.7 1 0 0 1 1 1 0 Beta-casein like protein MerC PF03203.9 gi|14600426|ref|NP_146940.1| - 0.32 11.3 9.1 2.6 8.4 0.6 2.9 1 1 0 2 2 2 0 MerC mercury resistance protein DUF4131 PF13567.1 gi|14600426|ref|NP_146940.1| - 1.1 8.6 14.8 2.9 7.2 0.1 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) Methyltransf_26 PF13659.1 gi|118430866|ref|NP_146941.2| - 3.4e-09 36.7 0.0 2.6e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|118430866|ref|NP_146941.2| - 1.1e-06 28.3 0.0 8.5e-06 25.4 0.0 2.0 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|118430866|ref|NP_146941.2| - 9.6e-06 25.2 0.0 0.00069 19.1 0.0 2.2 2 0 0 2 2 2 1 DNA methylase MethyltransfD12 PF02086.10 gi|118430866|ref|NP_146941.2| - 0.0017 17.8 0.4 0.003 17.0 0.0 1.5 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|118430866|ref|NP_146941.2| - 0.0029 17.0 0.0 0.0061 15.9 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|118430866|ref|NP_146941.2| - 0.032 13.8 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF4248 PF14053.1 gi|118430866|ref|NP_146941.2| - 0.14 11.8 0.0 0.39 10.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) EamA PF00892.15 gi|118430867|ref|NP_146944.2| - 2.5e-28 98.6 28.0 4.3e-15 55.8 5.5 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|118430867|ref|NP_146944.2| - 3.1e-06 27.3 30.2 7.2e-05 22.9 7.1 3.6 2 2 2 4 4 4 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|118430867|ref|NP_146944.2| - 0.072 11.9 5.4 0.15 10.9 0.5 2.2 2 0 0 2 2 2 0 UAA transporter family TPT PF03151.11 gi|118430867|ref|NP_146944.2| - 0.32 10.6 13.1 0.85 9.2 2.1 2.9 1 1 1 2 2 2 0 Triose-phosphate Transporter family DUF2953 PF11167.3 gi|118430867|ref|NP_146944.2| - 1.2 9.0 3.6 22 5.0 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) MdcE PF06833.6 gi|118430867|ref|NP_146944.2| - 2.7 7.1 7.6 0.079 12.1 0.7 1.7 2 0 0 2 2 2 0 Malonate decarboxylase gamma subunit (MdcE) MoCF_biosynth PF00994.19 gi|14600431|ref|NP_146945.1| - 2e-28 98.6 0.0 2.4e-28 98.3 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain ATP-synt_F PF01990.12 gi|14600431|ref|NP_146945.1| - 0.0084 16.4 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit FokI_N PF02981.10 gi|14600431|ref|NP_146945.1| - 0.14 11.7 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease FokI, recognition domain AdoMet_dc PF02675.10 gi|14600432|ref|NP_146946.1| - 2.9e-32 110.7 0.0 3.3e-32 110.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase AAA_10 PF12846.2 gi|118430869|ref|NP_146947.2| - 1.2e-18 67.5 0.2 3.2e-11 43.2 0.0 2.4 2 1 0 2 2 2 2 AAA-like domain HAS-barrel PF09378.5 gi|118430869|ref|NP_146947.2| - 1.3e-10 41.0 0.2 2.5e-10 40.0 0.1 1.6 1 0 0 1 1 1 1 HAS barrel domain DUF87 PF01935.12 gi|118430869|ref|NP_146947.2| - 7e-09 35.8 0.0 1.7e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|118430869|ref|NP_146947.2| - 8.8e-09 35.1 1.5 8.8e-06 25.3 0.1 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|118430869|ref|NP_146947.2| - 6.3e-07 29.6 0.0 0.012 15.7 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA PF00004.24 gi|118430869|ref|NP_146947.2| - 7e-07 29.5 0.0 0.0017 18.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.7 gi|118430869|ref|NP_146947.2| - 2e-06 26.4 0.0 0.027 12.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|118430869|ref|NP_146947.2| - 6.4e-06 25.0 0.0 2e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|118430869|ref|NP_146947.2| - 1.3e-05 24.7 0.0 0.00047 19.6 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|118430869|ref|NP_146947.2| - 7.3e-05 22.2 0.0 0.17 11.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|118430869|ref|NP_146947.2| - 0.00038 19.4 0.1 0.001 18.0 0.1 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|118430869|ref|NP_146947.2| - 0.00069 19.1 0.0 0.51 9.8 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|118430869|ref|NP_146947.2| - 0.0013 18.7 0.2 0.032 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain ResIII PF04851.10 gi|118430869|ref|NP_146947.2| - 0.0017 18.2 0.0 1.1 8.9 0.0 2.5 3 0 0 3 3 2 1 Type III restriction enzyme, res subunit AAA_29 PF13555.1 gi|118430869|ref|NP_146947.2| - 0.0024 17.3 0.1 0.0046 16.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|118430869|ref|NP_146947.2| - 0.0037 16.9 0.0 0.027 14.1 0.0 2.1 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.22 gi|118430869|ref|NP_146947.2| - 0.0043 17.3 0.0 0.014 15.7 0.0 1.8 2 0 0 2 2 1 1 ABC transporter MobB PF03205.9 gi|118430869|ref|NP_146947.2| - 0.0078 15.9 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|118430869|ref|NP_146947.2| - 0.0091 15.4 0.1 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|118430869|ref|NP_146947.2| - 0.011 15.4 0.0 0.029 14.1 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|118430869|ref|NP_146947.2| - 0.024 14.3 0.0 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase AAA_17 PF13207.1 gi|118430869|ref|NP_146947.2| - 0.05 14.4 0.0 0.12 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|118430869|ref|NP_146947.2| - 0.066 13.5 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|118430869|ref|NP_146947.2| - 0.072 13.5 0.0 0.44 11.0 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein AAA_14 PF13173.1 gi|118430869|ref|NP_146947.2| - 0.076 12.9 0.0 0.68 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|118430869|ref|NP_146947.2| - 0.082 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_33 PF13671.1 gi|118430869|ref|NP_146947.2| - 0.085 12.7 0.0 0.27 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|118430869|ref|NP_146947.2| - 0.09 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|118430869|ref|NP_146947.2| - 0.15 11.0 0.1 5.2 5.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_21 PF13304.1 gi|118430869|ref|NP_146947.2| - 0.16 11.9 0.1 5.2 6.9 0.0 2.6 3 0 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.12 gi|118430869|ref|NP_146947.2| - 0.18 11.2 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein G-alpha PF00503.15 gi|118430869|ref|NP_146947.2| - 0.26 9.9 0.2 0.39 9.3 0.1 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NurA PF09376.5 gi|118430870|ref|NP_146948.2| - 5.1e-21 75.2 2.0 6.3e-21 74.9 1.4 1.1 1 0 0 1 1 1 1 NurA domain Nitroreductase PF00881.19 gi|118430871|ref|NP_146950.2| - 6.8e-20 71.5 0.0 9.5e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family SHS2_FTSA PF02491.15 gi|118430871|ref|NP_146950.2| - 0.053 13.4 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA PHP PF02811.14 gi|118430872|ref|NP_146951.2| - 3.7e-17 62.6 0.0 5.3e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|118430872|ref|NP_146951.2| - 2.8e-14 52.3 0.3 1.2e-13 50.2 0.0 2.3 3 0 0 3 3 3 1 PHP-associated AP_endonuc_2 PF01261.19 gi|118430872|ref|NP_146951.2| - 0.1 11.8 0.1 0.28 10.4 0.1 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel AhpC-TSA PF00578.16 gi|14600438|ref|NP_146952.1| - 5.5e-40 135.8 0.0 6.6e-40 135.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|14600438|ref|NP_146952.1| - 4.1e-25 88.0 0.0 5e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|14600438|ref|NP_146952.1| - 2.2e-05 24.3 0.0 2.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|14600438|ref|NP_146952.1| - 0.0027 17.1 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) GSHPx PF00255.14 gi|14600438|ref|NP_146952.1| - 0.042 13.2 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase DUF2175 PF09943.4 gi|118430874|ref|NP_146953.2| - 8.8e-32 109.1 0.0 9.9e-32 109.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) zf-RING_2 PF13639.1 gi|118430874|ref|NP_146953.2| - 0.041 13.7 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Ring finger domain Vps39_2 PF10367.4 gi|118430874|ref|NP_146953.2| - 0.073 13.2 0.0 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 Antitoxin-MazE PF04014.13 gi|118430875|ref|NP_146954.2| - 4.4e-08 32.6 0.7 1.1e-07 31.3 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE PmbA_TldD PF01523.11 gi|118430876|ref|NP_146955.2| - 1.1e-62 211.9 2.0 1.4e-62 211.6 1.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|14600442|ref|NP_146956.1| - 5.5e-38 130.9 0.1 9.1e-38 130.1 0.0 1.4 1 1 0 1 1 1 1 Putative modulator of DNA gyrase Hist_deacetyl PF00850.14 gi|14602183|ref|NP_146957.1| - 1.1e-63 215.3 0.0 1.4e-63 215.0 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Homeobox_KN PF05920.6 gi|14602183|ref|NP_146957.1| - 0.31 10.7 1.0 0.54 9.9 0.0 1.8 2 0 0 2 2 2 0 Homeobox KN domain Antitoxin-MazE PF04014.13 gi|118430877|ref|NP_146958.2| - 8.2e-09 35.0 0.2 1.9e-08 33.8 0.2 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ALMS_motif PF15309.1 gi|118430878|ref|NP_146961.2| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 ALMS motif DUF429 PF04250.8 gi|118430879|ref|NP_146962.2| - 9.8e-23 80.5 0.4 2.5e-21 75.9 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Tim17 PF02466.14 gi|118430879|ref|NP_146962.2| - 0.14 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family DNA_pol_B PF00136.16 gi|14600448|ref|NP_146963.1| - 9.2e-85 285.1 0.0 1.4e-84 284.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|14600448|ref|NP_146963.1| - 6.9e-27 94.1 0.0 1.3e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|14600448|ref|NP_146963.1| - 4.1e-07 29.9 0.1 1.4e-05 24.9 0.1 2.4 1 1 0 1 1 1 1 RNase_H superfamily tRNA-synt_1g PF09334.6 gi|14600448|ref|NP_146963.1| - 0.0039 15.9 0.0 0.0063 15.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) DNA_pol_B_exo2 PF10108.4 gi|14600448|ref|NP_146963.1| - 0.026 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF4050 PF13259.1 gi|14600448|ref|NP_146963.1| - 0.037 13.9 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4050) CCG PF02754.11 gi|118430880|ref|NP_146964.2| - 4.3e-27 93.9 0.0 8.3e-13 48.1 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|118430880|ref|NP_146964.2| - 1.4e-12 47.4 3.0 1.4e-12 47.4 2.1 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|118430880|ref|NP_146964.2| - 1.2e-09 37.8 5.2 3.4e-09 36.3 3.6 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|118430880|ref|NP_146964.2| - 2.3e-05 24.7 9.4 0.017 15.5 0.1 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|118430880|ref|NP_146964.2| - 3.4e-05 23.5 16.7 0.0023 17.7 1.1 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|118430880|ref|NP_146964.2| - 4.3e-05 23.6 20.6 6e-05 23.2 7.2 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|118430880|ref|NP_146964.2| - 0.00076 19.8 10.4 0.00076 19.8 7.2 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|118430880|ref|NP_146964.2| - 0.0011 19.1 17.6 0.026 14.8 2.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|118430880|ref|NP_146964.2| - 0.0013 19.0 14.2 0.0073 16.6 7.7 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|118430880|ref|NP_146964.2| - 0.0013 18.2 17.8 0.0071 15.8 0.7 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Nitrate_red_gam PF02665.9 gi|118430880|ref|NP_146964.2| - 0.0018 17.6 2.7 0.0031 16.8 1.8 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_6 PF12837.2 gi|118430880|ref|NP_146964.2| - 0.0022 17.7 1.6 0.0022 17.7 1.1 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|118430880|ref|NP_146964.2| - 0.085 12.7 11.5 0.2 11.5 0.3 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain RNA_pol_N PF01194.12 gi|118430880|ref|NP_146964.2| - 0.13 12.3 2.4 0.21 11.6 0.0 2.5 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit Fer4_16 PF13484.1 gi|118430880|ref|NP_146964.2| - 0.17 12.6 13.7 4.9 7.9 9.9 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|118430880|ref|NP_146964.2| - 0.3 11.6 5.6 11 6.7 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain HSP20 PF00011.16 gi|118430881|ref|NP_146965.2| - 9.3e-06 25.4 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PAC2 PF09754.4 gi|118430882|ref|NP_146966.2| - 1.4e-29 103.5 0.1 1.7e-29 103.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family SBP_bac_11 PF13531.1 gi|118430882|ref|NP_146966.2| - 0.13 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Fer4_15 PF13459.1 gi|118430883|ref|NP_146967.2| - 4e-14 52.9 0.7 4.5e-14 52.7 0.5 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|118430883|ref|NP_146967.2| - 6.4e-09 36.0 0.1 9.5e-09 35.5 0.1 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|118430883|ref|NP_146967.2| - 0.22 11.3 2.4 0.89 9.4 1.7 1.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.2 gi|118430883|ref|NP_146967.2| - 2.5 8.1 6.3 0.24 11.3 0.7 2.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|118430883|ref|NP_146967.2| - 4.9 7.9 5.9 7.9 7.3 1.2 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain MMR_HSR1 PF01926.18 gi|14600453|ref|NP_146968.1| - 1.2e-11 44.6 0.4 2.6e-08 33.8 0.0 2.3 2 1 0 2 2 2 2 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|14600453|ref|NP_146968.1| - 4.2e-08 33.1 1.5 0.0017 18.2 0.1 3.2 3 0 0 3 3 3 2 Dynamin family DUF258 PF03193.11 gi|14600453|ref|NP_146968.1| - 8.9e-05 21.7 0.0 0.00014 21.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|14600453|ref|NP_146968.1| - 0.00014 21.3 0.5 0.0013 18.2 0.1 2.2 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|14600453|ref|NP_146968.1| - 0.0014 17.9 0.1 0.45 9.7 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B LNS2 PF08235.8 gi|14600453|ref|NP_146968.1| - 0.063 12.8 0.0 0.53 9.8 0.0 2.0 2 0 0 2 2 2 0 LNS2 (Lipin/Ned1/Smp2) cobW PF02492.14 gi|14600453|ref|NP_146968.1| - 0.069 12.5 0.4 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|14600453|ref|NP_146968.1| - 0.17 12.4 0.0 0.94 9.9 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein DUF2892 PF11127.3 gi|118430884|ref|NP_146969.2| - 1.3 8.8 8.7 1.8 8.4 1.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) DctQ PF04290.7 gi|118430884|ref|NP_146969.2| - 2.1 8.1 6.1 11 5.8 4.2 2.0 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF87 PF01935.12 gi|14600455|ref|NP_146970.1| - 6.6e-49 166.7 0.0 1.1e-48 166.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|14600455|ref|NP_146970.1| - 1.3e-17 64.1 0.0 2.1e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|14600455|ref|NP_146970.1| - 2.9e-09 36.7 0.5 1.1e-08 34.8 0.3 2.0 1 1 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|14600455|ref|NP_146970.1| - 4.2e-08 31.9 0.1 9.9e-06 24.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|14600455|ref|NP_146970.1| - 0.0011 18.5 0.5 0.3 10.5 0.0 2.9 3 0 0 3 3 3 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|14600455|ref|NP_146970.1| - 0.0025 16.5 0.0 0.16 10.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|118430885|ref|NP_146971.2| - 9.7e-42 143.1 0.0 1.1e-41 142.9 0.0 1.1 1 0 0 1 1 1 1 NurA domain SMC_N PF02463.14 gi|14600457|ref|NP_146972.1| - 4.6e-22 78.3 3.7 7.8e-11 41.6 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|14600457|ref|NP_146972.1| - 1.1e-16 60.5 38.8 4.3e-05 22.2 0.5 5.7 2 1 3 5 5 5 5 AAA domain AAA_21 PF13304.1 gi|14600457|ref|NP_146972.1| - 2.5e-15 57.2 0.0 3.3e-07 30.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|14600457|ref|NP_146972.1| - 7.5e-14 52.5 61.7 1.2e-07 32.2 27.2 5.4 1 1 1 2 2 1 1 AAA domain Rad50_zn_hook PF04423.9 gi|14600457|ref|NP_146972.1| - 2e-12 46.3 0.0 2e-12 46.3 0.0 4.9 4 0 0 4 4 3 1 Rad50 zinc hook motif AAA_15 PF13175.1 gi|14600457|ref|NP_146972.1| - 7.2e-10 38.4 0.0 1.2e-05 24.5 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|14600457|ref|NP_146972.1| - 1.3e-09 37.8 0.0 3.1e-08 33.4 0.0 2.7 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|14600457|ref|NP_146972.1| - 5e-07 29.1 0.0 9e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|14600457|ref|NP_146972.1| - 2.4e-06 27.9 12.5 9.5e-05 22.7 0.0 5.0 3 2 0 3 3 3 1 ABC transporter IncA PF04156.9 gi|14600457|ref|NP_146972.1| - 1.1e-05 25.0 99.5 0.053 13.1 10.1 6.2 1 1 5 6 6 6 4 IncA protein NPV_P10 PF05531.7 gi|14600457|ref|NP_146972.1| - 0.0013 18.9 16.2 1.3 9.2 0.3 7.5 4 3 2 7 7 7 1 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.1 gi|14600457|ref|NP_146972.1| - 0.0021 18.4 0.5 0.0021 18.4 0.4 9.8 4 2 4 8 8 7 1 N-terminal domain of unknown function (DUF4140) BRE1 PF08647.6 gi|14600457|ref|NP_146972.1| - 0.0037 17.2 10.7 0.0037 17.2 7.4 7.0 4 2 2 6 6 4 1 BRE1 E3 ubiquitin ligase BLOC1_2 PF10046.4 gi|14600457|ref|NP_146972.1| - 0.0063 16.6 41.4 0.34 11.0 4.3 7.5 3 2 3 7 7 7 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ERM PF00769.14 gi|14600457|ref|NP_146972.1| - 0.0073 15.8 18.9 0.0073 15.8 13.1 5.7 2 1 2 5 5 5 2 Ezrin/radixin/moesin family FtsK_SpoIIIE PF01580.13 gi|14600457|ref|NP_146972.1| - 0.0088 15.5 0.0 0.0088 15.5 0.0 5.0 2 1 0 2 2 1 1 FtsK/SpoIIIE family MukB PF04310.7 gi|14600457|ref|NP_146972.1| - 0.021 14.1 0.0 0.05 12.9 0.0 1.6 1 0 0 1 1 1 0 MukB N-terminal DUF1664 PF07889.7 gi|14600457|ref|NP_146972.1| - 0.032 14.0 37.0 0.11 12.2 1.4 6.1 4 2 3 7 7 7 0 Protein of unknown function (DUF1664) DUF258 PF03193.11 gi|14600457|ref|NP_146972.1| - 0.041 13.0 0.0 0.11 11.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|14600457|ref|NP_146972.1| - 0.048 13.0 0.9 0.95 8.8 0.0 3.6 2 1 1 3 3 3 0 AAA domain Reo_sigmaC PF04582.7 gi|14600457|ref|NP_146972.1| - 0.062 12.4 22.0 0.12 11.5 0.3 4.7 2 2 2 5 5 5 0 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|14600457|ref|NP_146972.1| - 0.068 10.8 90.9 1.7 6.2 12.8 5.3 3 1 1 5 5 5 0 AAA domain V_ATPase_I PF01496.14 gi|14600457|ref|NP_146972.1| - 0.096 10.5 52.8 0.0078 14.1 8.6 3.5 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family MMR_HSR1 PF01926.18 gi|14600457|ref|NP_146972.1| - 0.12 12.3 0.0 0.41 10.6 0.0 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF948 PF06103.6 gi|14600457|ref|NP_146972.1| - 0.17 11.7 14.2 34 4.3 0.1 6.5 5 1 2 7 7 7 0 Bacterial protein of unknown function (DUF948) AAA_22 PF13401.1 gi|14600457|ref|NP_146972.1| - 1 9.5 0.0 1 9.5 0.0 3.6 2 1 0 2 2 1 0 AAA domain GAS PF13851.1 gi|14600457|ref|NP_146972.1| - 1.6 7.8 84.6 0.061 12.5 11.9 6.1 2 2 5 7 7 7 0 Growth-arrest specific micro-tubule binding Dynamin_N PF00350.18 gi|14600457|ref|NP_146972.1| - 1.9 8.2 0.0 1.9 8.2 0.0 3.6 3 1 0 3 3 2 0 Dynamin family Metallophos_2 PF12850.2 gi|14600458|ref|NP_146973.1| - 5.7e-10 39.2 0.0 9.9e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|14600458|ref|NP_146973.1| - 6.7e-10 38.6 0.0 1.3e-09 37.8 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Ribosomal_L40e PF01020.12 gi|14600459|ref|NP_146974.1| - 7.3e-08 31.8 7.1 8.5e-08 31.6 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|14600459|ref|NP_146974.1| - 0.0037 16.7 0.4 0.0049 16.3 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|14600459|ref|NP_146974.1| - 0.0054 16.5 1.6 0.0065 16.2 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|14600459|ref|NP_146974.1| - 0.0065 15.6 1.9 0.0085 15.2 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain YgbA_NO PF11756.3 gi|14600459|ref|NP_146974.1| - 0.026 14.5 0.6 0.026 14.5 0.4 1.0 1 0 0 1 1 1 0 Nitrous oxide-stimulated promoter DnaJ_CXXCXGXG PF00684.14 gi|14600459|ref|NP_146974.1| - 0.046 13.7 0.6 0.052 13.5 0.4 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-RanBP PF00641.13 gi|14600459|ref|NP_146974.1| - 0.057 12.5 4.5 0.1 11.7 3.0 1.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-FPG_IleRS PF06827.9 gi|14600459|ref|NP_146974.1| - 0.67 9.6 7.8 3.1 7.5 0.3 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS RNA_POL_M_15KD PF02150.11 gi|14600459|ref|NP_146974.1| - 0.67 9.6 4.2 1.2 8.9 0.0 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|14600459|ref|NP_146974.1| - 0.86 9.5 3.7 3.8 7.5 2.5 2.0 1 1 1 2 2 2 0 Zinc ribbon domain YhfH PF14149.1 gi|14600459|ref|NP_146974.1| - 0.88 9.4 0.1 0.88 9.4 0.1 2.3 3 0 0 3 3 3 0 YhfH-like protein UPF0547 PF10571.4 gi|14600459|ref|NP_146974.1| - 1.1 9.0 3.6 2 8.1 2.5 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.4 gi|14600459|ref|NP_146974.1| - 1.1 8.3 10.2 0.36 9.9 0.4 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-trcl PF13451.1 gi|14600459|ref|NP_146974.1| - 4.3 7.0 7.0 6.3 6.5 2.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain Ribosomal_L37e PF01907.14 gi|14600459|ref|NP_146974.1| - 8.4 6.2 10.3 7.7 6.3 1.4 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e XPG_I PF00867.13 gi|77640971|ref|NP_146975.2| - 3.2e-26 91.1 0.0 5.2e-26 90.5 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|77640971|ref|NP_146975.2| - 6.5e-22 77.7 0.0 1e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain ASCH PF04266.9 gi|118430886|ref|NP_146976.2| - 1.8e-15 57.1 0.1 2.7e-15 56.6 0.1 1.3 1 0 0 1 1 1 1 ASCH domain Imm34 PF15596.1 gi|118430886|ref|NP_146976.2| - 0.13 12.4 0.0 0.34 11.1 0.0 1.7 2 0 0 2 2 2 0 Immunity protein 34 Lar_restr_allev PF14354.1 gi|118430887|ref|YP_874802.1| - 0.018 15.3 0.1 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|118430887|ref|YP_874802.1| - 0.018 14.8 0.4 5 7.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.1 gi|118430887|ref|YP_874802.1| - 0.027 14.2 0.5 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|118430887|ref|YP_874802.1| - 0.13 12.0 2.0 9.8 5.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 tRNA-Thr_ED PF08915.6 gi|118430888|ref|NP_146977.2| - 3.8e-46 156.4 0.0 6e-46 155.8 0.0 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|118430888|ref|NP_146977.2| - 1.1e-15 57.3 0.1 1.6e-15 56.8 0.1 1.3 1 0 0 1 1 1 1 Anticodon binding domain Rad51 PF08423.6 gi|14600463|ref|NP_146978.1| - 1.3e-95 319.1 0.0 1.6e-95 318.9 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|14600463|ref|NP_146978.1| - 5.2e-15 55.3 0.1 7e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|14600463|ref|NP_146978.1| - 4.3e-14 52.4 0.2 9.8e-14 51.2 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|14600463|ref|NP_146978.1| - 8.9e-13 48.0 0.0 1.3e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|14600463|ref|NP_146978.1| - 8.9e-12 44.6 0.0 1.2e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|14600463|ref|NP_146978.1| - 1.4e-05 24.9 0.0 3.7e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|14600463|ref|NP_146978.1| - 8.2e-05 22.4 0.0 0.0002 21.2 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.18 gi|14600463|ref|NP_146978.1| - 0.00011 21.7 1.4 0.00032 20.2 0.0 2.6 4 0 0 4 4 4 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|14600463|ref|NP_146978.1| - 0.00013 21.4 0.0 0.00036 20.0 0.0 1.8 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda 5_3_exonuc PF01367.15 gi|14600463|ref|NP_146978.1| - 0.0024 18.0 0.1 0.012 15.8 0.0 2.0 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF4332 PF14229.1 gi|14600463|ref|NP_146978.1| - 0.0028 17.6 0.3 0.025 14.5 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) AAA_18 PF13238.1 gi|14600463|ref|NP_146978.1| - 0.0054 17.0 0.1 0.015 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|14600463|ref|NP_146978.1| - 0.012 15.7 0.0 0.034 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|14600463|ref|NP_146978.1| - 0.014 15.4 0.0 0.058 13.4 0.0 2.1 2 0 0 2 2 1 0 IMS family HHH motif AAA_24 PF13479.1 gi|14600463|ref|NP_146978.1| - 0.018 14.6 0.0 0.067 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain HHH_8 PF14716.1 gi|14600463|ref|NP_146978.1| - 0.091 12.9 0.0 0.28 11.4 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF1240 PF06836.7 gi|14600464|ref|NP_146979.1| - 0.072 13.3 0.1 0.19 11.9 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1240) HIT PF01230.18 gi|118430889|ref|NP_146980.2| - 3.5e-14 53.0 0.0 5.2e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|118430889|ref|NP_146980.2| - 6.3e-08 32.8 0.0 8.9e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|118430889|ref|NP_146980.2| - 3e-07 30.1 0.0 4.3e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DHH PF01368.15 gi|14600466|ref|NP_146981.1| - 6.2e-10 38.8 0.0 1.3e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|14600466|ref|NP_146981.1| - 2.3e-06 27.2 0.4 9.9e-06 25.1 0.1 2.1 2 0 0 2 2 2 1 DHHA1 domain DUF4129 PF13559.1 gi|118430890|ref|NP_146982.2| - 4e-16 58.7 1.4 4e-16 58.7 1.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF2863 PF11062.3 gi|118430890|ref|NP_146982.2| - 0.031 12.3 0.0 0.048 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) Snf7 PF03357.16 gi|118430890|ref|NP_146982.2| - 0.22 10.9 0.5 0.36 10.1 0.3 1.2 1 0 0 1 1 1 0 Snf7 DUF4392 PF14336.1 gi|118430891|ref|NP_146983.2| - 0.026 13.3 0.0 0.12 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4392) DUF4350 PF14258.1 gi|118430891|ref|NP_146983.2| - 0.046 13.9 1.0 0.15 12.3 0.1 2.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4350) AAA_3 PF07726.6 gi|14600469|ref|NP_146984.1| - 9.6e-59 196.6 0.0 1.4e-58 196.1 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|14600469|ref|NP_146984.1| - 9.6e-15 54.5 0.0 2e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|14600469|ref|NP_146984.1| - 4.5e-09 35.5 0.2 0.00079 18.3 0.0 2.8 1 1 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|14600469|ref|NP_146984.1| - 1.5e-05 25.1 0.0 4.1e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|14600469|ref|NP_146984.1| - 0.00012 21.1 0.5 0.0025 16.8 0.3 2.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|14600469|ref|NP_146984.1| - 0.00048 19.3 1.3 0.17 11.0 0.4 2.2 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|14600469|ref|NP_146984.1| - 0.00072 20.3 0.0 0.0087 16.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|14600469|ref|NP_146984.1| - 0.00092 18.7 0.0 0.044 13.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF58 PF01882.13 gi|118430892|ref|NP_146985.2| - 5e-17 61.8 0.0 1e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 FLILHELTA PF10306.4 gi|118430893|ref|NP_146986.2| - 0.054 13.5 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Hypothetical protein FLILHELTA DUF424 PF04242.8 gi|118430895|ref|NP_146988.2| - 6.5e-23 80.5 0.2 7.2e-23 80.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ETF PF01012.16 gi|118430896|ref|NP_146989.2| - 1.2e-32 112.9 1.0 1.2e-32 112.9 0.7 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Usp PF00582.21 gi|118430896|ref|NP_146989.2| - 0.2 11.8 2.6 0.13 12.4 0.3 1.7 2 0 0 2 2 2 0 Universal stress protein family ETF_alpha PF00766.14 gi|14600475|ref|NP_146990.1| - 1e-29 101.9 0.0 1.8e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|14600475|ref|NP_146990.1| - 3.2e-12 46.4 0.0 2.4e-11 43.6 0.0 2.1 2 0 0 2 2 2 1 Electron transfer flavoprotein domain DUF1646 PF07854.7 gi|118430897|ref|NP_146991.2| - 1.3e-154 514.5 31.7 1.5e-154 514.2 22.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) G_glu_transpept PF01019.16 gi|14600477|ref|NP_146992.1| - 2.8e-114 382.4 0.0 3.4e-114 382.1 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase EII-Sor PF03609.9 gi|14600477|ref|NP_146992.1| - 0.36 10.0 3.4 0.51 9.5 2.3 1.2 1 0 0 1 1 1 0 PTS system sorbose-specific iic component Usp PF00582.21 gi|118430898|ref|NP_146993.2| - 1.3e-38 132.3 4.1 3.6e-19 69.3 0.8 2.1 2 0 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.13 gi|118430898|ref|NP_146993.2| - 0.0024 17.6 0.1 1.4 8.6 0.0 2.8 2 1 0 2 2 2 2 DNA photolyase Methyltrans_SAM PF10672.4 gi|118430899|ref|NP_146994.2| - 8.3e-17 60.9 0.0 1.2e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|118430899|ref|NP_146994.2| - 7.5e-14 51.5 0.0 1.3e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|118430899|ref|NP_146994.2| - 3e-08 33.5 0.0 4.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|118430899|ref|NP_146994.2| - 1.5e-07 31.4 0.0 3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118430899|ref|NP_146994.2| - 0.00037 19.8 0.0 0.00063 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|118430899|ref|NP_146994.2| - 0.00084 18.5 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PUA PF01472.15 gi|118430899|ref|NP_146994.2| - 0.0078 15.9 0.1 0.025 14.2 0.1 1.9 1 0 0 1 1 1 1 PUA domain Methyltransf_18 PF12847.2 gi|118430899|ref|NP_146994.2| - 0.0082 16.7 0.0 0.022 15.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|118430899|ref|NP_146994.2| - 0.028 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Fe_dep_repress PF01325.14 gi|14600480|ref|NP_146995.1| - 1.6e-09 37.5 0.0 3e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|14600480|ref|NP_146995.1| - 1.3e-06 27.9 0.0 2.3e-05 23.9 0.0 2.4 2 0 0 2 2 2 1 MarR family Fe_dep_repr_C PF02742.10 gi|14600480|ref|NP_146995.1| - 1.8e-06 27.5 0.0 3.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.17 gi|14600480|ref|NP_146995.1| - 7e-05 22.4 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|14600480|ref|NP_146995.1| - 0.0044 16.5 0.0 0.0085 15.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|14600480|ref|NP_146995.1| - 0.0091 15.6 0.1 0.071 12.7 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|14600480|ref|NP_146995.1| - 0.011 15.2 0.1 0.023 14.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|14600480|ref|NP_146995.1| - 0.032 13.6 0.0 0.11 11.9 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|14600480|ref|NP_146995.1| - 0.037 13.3 0.1 0.094 12.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Crp_2 PF13545.1 gi|14600480|ref|NP_146995.1| - 0.039 13.7 0.4 0.073 12.8 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|14600480|ref|NP_146995.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|14600480|ref|NP_146995.1| - 0.11 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3096 PF11295.3 gi|14600480|ref|NP_146995.1| - 0.24 10.9 1.3 18 4.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) Snf7 PF03357.16 gi|118430900|ref|NP_146996.2| - 1.7e-06 27.4 2.1 2.3e-06 27.0 1.5 1.1 1 0 0 1 1 1 1 Snf7 Baculo_PEP_C PF04513.7 gi|118430900|ref|NP_146996.2| - 0.006 16.4 0.0 0.87 9.4 0.0 2.2 2 0 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus NEP PF10167.4 gi|118430900|ref|NP_146996.2| - 0.0098 15.5 0.4 2.4 7.8 0.2 2.7 1 1 2 3 3 3 2 Uncharacterised conserved protein Epimerase_2 PF02350.14 gi|118430900|ref|NP_146996.2| - 0.033 12.9 0.3 0.056 12.1 0.1 1.5 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase SMC_Nse1 PF07574.8 gi|118430900|ref|NP_146996.2| - 0.061 12.9 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex RHSP PF07999.6 gi|118430900|ref|NP_146996.2| - 0.082 11.4 0.1 0.11 11.0 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon hot spot protein DUF1664 PF07889.7 gi|14600482|ref|NP_146997.1| - 0.0012 18.5 1.9 0.0069 16.1 0.4 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) MCPsignal PF00015.16 gi|14600482|ref|NP_146997.1| - 0.011 15.2 1.7 0.018 14.6 1.2 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain AKNA PF12443.3 gi|14600482|ref|NP_146997.1| - 0.019 14.9 0.1 0.044 13.8 0.1 1.6 1 0 0 1 1 1 0 AT-hook-containing transcription factor HDV_ag PF01517.13 gi|14600482|ref|NP_146997.1| - 0.048 13.3 0.5 0.048 13.3 0.4 1.9 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen CCDC144C PF14915.1 gi|14600482|ref|NP_146997.1| - 0.053 12.4 4.7 0.024 13.5 1.0 1.8 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region DUF4618 PF15397.1 gi|14600482|ref|NP_146997.1| - 0.059 12.6 2.9 0.09 12.1 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Fzo_mitofusin PF04799.8 gi|14600482|ref|NP_146997.1| - 0.073 12.4 1.7 0.095 12.0 0.6 1.5 1 1 0 1 1 1 0 fzo-like conserved region DUF552 PF04472.7 gi|14600482|ref|NP_146997.1| - 0.085 12.7 1.4 17 5.4 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF552) TMF_DNA_bd PF12329.3 gi|14600482|ref|NP_146997.1| - 0.15 11.9 6.7 0.87 9.4 0.2 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF2228 PF10228.4 gi|14600482|ref|NP_146997.1| - 0.23 10.9 2.2 0.31 10.5 1.6 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) COG5 PF10392.4 gi|14600482|ref|NP_146997.1| - 0.96 9.4 3.9 2.6 7.9 1.5 2.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Atg14 PF10186.4 gi|14600482|ref|NP_146997.1| - 2.9 6.7 7.0 3.9 6.3 4.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 P5CR_dimer PF14748.1 gi|118430901|ref|NP_146998.2| - 6.5e-31 106.5 0.1 1.1e-30 105.7 0.1 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|118430901|ref|NP_146998.2| - 2e-18 66.5 0.6 4.5e-18 65.4 0.4 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|118430901|ref|NP_146998.2| - 2.4e-08 33.5 0.4 4.8e-08 32.5 0.3 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|118430901|ref|NP_146998.2| - 5.6e-05 22.9 1.2 0.0013 18.4 0.8 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|118430901|ref|NP_146998.2| - 8.2e-05 21.8 0.1 0.00013 21.1 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|118430901|ref|NP_146998.2| - 0.00018 21.3 0.2 0.00042 20.1 0.1 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|118430901|ref|NP_146998.2| - 0.0013 18.7 2.3 0.0028 17.6 0.7 2.1 2 1 0 2 2 2 1 NADH(P)-binding PDH PF02153.12 gi|118430901|ref|NP_146998.2| - 0.0084 15.0 0.0 0.029 13.2 0.0 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase AlaDh_PNT_C PF01262.16 gi|118430901|ref|NP_146998.2| - 0.013 15.0 0.3 0.04 13.4 0.3 1.7 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N PF00107.21 gi|118430901|ref|NP_146998.2| - 0.023 14.2 0.0 0.06 12.8 0.0 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Rossmann-like PF10727.4 gi|118430901|ref|NP_146998.2| - 0.042 13.5 1.2 0.074 12.7 0.9 1.4 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|118430901|ref|NP_146998.2| - 0.12 12.0 0.8 0.38 10.3 0.6 1.8 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|118430901|ref|NP_146998.2| - 0.62 9.8 3.4 1.8 8.3 2.4 1.8 1 0 0 1 1 1 0 ThiF family Phage_holin_5 PF06946.6 gi|118430901|ref|NP_146998.2| - 1.1 9.5 4.6 4.7 7.4 0.0 3.1 2 1 1 3 3 3 0 Phage holin Peptidase_M54 PF07998.6 gi|118430902|ref|NP_146999.2| - 4.9e-32 111.2 0.0 5.7e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|118430902|ref|NP_146999.2| - 0.00027 20.7 0.0 0.00028 20.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|118430902|ref|NP_146999.2| - 0.0033 16.3 0.0 0.0039 16.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_4 PF13583.1 gi|118430902|ref|NP_146999.2| - 0.0057 16.2 0.0 0.0077 15.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|118430902|ref|NP_146999.2| - 0.028 12.8 0.1 0.038 12.4 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_2 PF13574.1 gi|118430902|ref|NP_146999.2| - 0.055 13.5 0.0 0.062 13.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like CoiA PF06054.6 gi|118430902|ref|NP_146999.2| - 0.063 12.1 0.3 0.15 10.9 0.2 1.5 2 0 0 2 2 2 0 Competence protein CoiA-like family Reprolysin_5 PF13688.1 gi|118430902|ref|NP_146999.2| - 0.098 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|118430902|ref|NP_146999.2| - 0.12 12.8 0.2 0.22 12.0 0.1 1.3 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like GAF PF01590.21 gi|118430902|ref|NP_146999.2| - 0.14 12.2 0.1 0.85 9.7 0.0 2.1 2 1 0 2 2 2 0 GAF domain Archease PF01951.11 gi|118430903|ref|NP_147000.2| - 3.1e-41 140.5 0.0 3.5e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|118430903|ref|NP_147000.2| - 0.026 14.1 0.1 0.17 11.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) HhH-GPD PF00730.20 gi|118430904|ref|NP_147001.2| - 2.4e-21 76.0 0.0 3.1e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|118430904|ref|NP_147001.2| - 1.3e-05 24.5 0.1 0.00024 20.6 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|118430904|ref|NP_147001.2| - 0.0002 21.4 0.8 0.06 13.5 0.2 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|118430904|ref|NP_147001.2| - 0.0029 17.7 10.4 0.0046 17.0 7.2 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Ets PF00178.17 gi|118430904|ref|NP_147001.2| - 0.0067 16.5 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 Ets-domain HHH_8 PF14716.1 gi|118430904|ref|NP_147001.2| - 0.038 14.1 0.2 0.61 10.3 0.0 2.7 1 1 0 2 2 2 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|118430904|ref|NP_147001.2| - 0.046 13.8 0.0 0.15 12.1 0.0 1.9 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family DUF1445 PF07286.7 gi|118430905|ref|NP_147002.2| - 0.012 15.2 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1445) Cdc6_C PF09079.6 gi|118430906|ref|NP_147003.2| - 3e-09 36.4 0.0 9.2e-09 34.9 0.0 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|118430906|ref|NP_147003.2| - 5.1e-08 33.1 0.0 1.3e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|118430906|ref|NP_147003.2| - 0.00056 18.6 0.0 0.0042 15.7 0.0 2.3 3 0 0 3 3 3 1 AAA-like domain AAA_16 PF13191.1 gi|118430906|ref|NP_147003.2| - 0.043 13.7 0.2 0.38 10.7 0.1 2.3 1 1 0 1 1 1 0 AAA ATPase domain HTH_5 PF01022.15 gi|118430907|ref|YP_874803.1| - 0.002 17.7 0.2 0.002 17.7 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|118430907|ref|YP_874803.1| - 0.007 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Cdc6_C PF09079.6 gi|118430907|ref|YP_874803.1| - 0.018 14.7 0.2 0.031 13.9 0.1 1.5 1 1 0 1 1 1 0 CDC6, C terminal HTH_20 PF12840.2 gi|118430907|ref|YP_874803.1| - 0.021 14.5 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|118430907|ref|YP_874803.1| - 0.029 14.2 0.2 0.082 12.7 0.1 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|118430907|ref|YP_874803.1| - 0.042 13.2 0.3 0.074 12.4 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|118430907|ref|YP_874803.1| - 0.048 13.3 0.1 0.07 12.8 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|118430907|ref|YP_874803.1| - 0.064 12.9 0.5 0.13 11.9 0.3 1.6 1 1 0 1 1 1 0 HTH domain MarR_2 PF12802.2 gi|118430907|ref|YP_874803.1| - 0.077 12.6 0.2 0.14 11.8 0.1 1.5 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|118430908|ref|NP_147005.2| - 1.4e-14 53.5 1.8 1.9e-11 43.4 0.0 3.3 1 1 2 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|118430908|ref|NP_147005.2| - 0.0026 17.5 0.0 0.58 10.0 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_28 PF13518.1 gi|118430908|ref|NP_147005.2| - 0.004 17.1 0.3 0.12 12.4 0.0 3.0 4 0 0 4 4 4 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|118430908|ref|NP_147005.2| - 0.028 14.0 2.2 1.2 8.9 0.4 2.9 3 0 0 3 3 3 0 MarR family HTH_29 PF13551.1 gi|118430908|ref|NP_147005.2| - 0.089 12.9 0.4 0.41 10.8 0.0 2.3 3 1 0 3 3 3 0 Winged helix-turn helix Tn7_TnsC_Int PF11426.3 gi|14600490|ref|NP_147006.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Tn7 transposition regulator TnsC MgtE PF01769.11 gi|118430910|ref|NP_147008.2| - 5.7e-10 39.6 44.1 4.1e-09 36.8 8.0 3.6 1 1 3 4 4 4 2 Divalent cation transporter 5-FTHF_cyc-lig PF01812.15 gi|14600493|ref|NP_147009.1| - 3.1e-40 137.9 0.0 3.6e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family YcaO PF02624.11 gi|14600493|ref|NP_147009.1| - 0.098 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 YcaO-like family MTHFR PF02219.12 gi|118430911|ref|NP_147010.2| - 0.00011 21.4 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase UbiA PF01040.13 gi|14600495|ref|NP_147011.1| - 5.3e-35 120.8 23.3 7e-35 120.4 16.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family tRNA-synt_1f PF01921.13 gi|118430912|ref|NP_147012.2| - 2.6e-106 355.3 0.0 3.4e-106 354.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) Zn_Tnp_IS1595 PF12760.2 gi|118430912|ref|NP_147012.2| - 0.044 13.5 1.0 0.1 12.3 0.7 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-CCHC_4 PF14392.1 gi|118430912|ref|NP_147012.2| - 0.21 11.3 1.2 1.6 8.4 0.1 2.5 2 0 0 2 2 2 0 Zinc knuckle PCNA_N PF00705.13 gi|14600497|ref|NP_147013.1| - 2.9e-10 39.7 0.0 1.7e-09 37.2 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|14600497|ref|NP_147013.1| - 3.5e-06 26.9 0.0 0.00015 21.6 0.0 2.6 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|14600497|ref|NP_147013.1| - 0.04 13.0 0.0 0.12 11.4 0.0 1.8 1 1 1 2 2 2 0 Rad9 Aldedh PF00171.17 gi|118430913|ref|NP_147014.2| - 3.8e-26 91.4 0.1 3.6e-25 88.2 0.1 2.2 1 1 0 1 1 1 1 Aldehyde dehydrogenase family Cob_adeno_trans PF01923.13 gi|118430914|ref|NP_147015.2| - 3.6e-46 156.9 0.0 4e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HTH_3 PF01381.17 gi|118430915|ref|NP_147017.2| - 7.7e-07 28.8 1.0 1.4e-06 28.0 0.0 1.9 3 0 0 3 3 3 1 Helix-turn-helix HTH_11 PF08279.7 gi|118430915|ref|NP_147017.2| - 0.0002 20.9 0.4 0.0025 17.4 0.1 2.4 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|118430915|ref|NP_147017.2| - 0.0026 17.0 0.5 0.0064 15.8 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|118430915|ref|NP_147017.2| - 0.0056 16.2 0.5 0.016 14.8 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|118430915|ref|NP_147017.2| - 0.0067 15.8 0.1 0.02 14.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|118430915|ref|NP_147017.2| - 0.007 16.5 0.1 0.007 16.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|118430915|ref|NP_147017.2| - 0.0081 16.0 0.3 0.027 14.3 0.2 2.0 1 1 0 1 1 1 1 Transposase HTH_19 PF12844.2 gi|118430915|ref|NP_147017.2| - 0.0097 15.9 0.0 0.035 14.1 0.0 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|118430915|ref|NP_147017.2| - 0.021 14.3 0.3 0.021 14.3 0.2 2.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Trp_repressor PF01371.14 gi|118430915|ref|NP_147017.2| - 0.046 13.6 0.3 0.12 12.3 0.1 1.7 2 1 0 2 2 2 0 Trp repressor protein HTH_10 PF04967.7 gi|118430915|ref|NP_147017.2| - 0.061 12.9 0.3 0.23 11.0 0.0 2.0 2 1 0 2 2 2 0 HTH DNA binding domain HTH_20 PF12840.2 gi|118430915|ref|NP_147017.2| - 0.068 12.9 0.4 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|118430916|ref|NP_147018.2| - 2.7e-37 128.5 0.0 3.2e-37 128.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|118430916|ref|NP_147018.2| - 5.5e-11 41.6 0.0 1.3e-10 40.4 0.0 1.5 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.14 gi|118430916|ref|NP_147018.2| - 5.8e-05 21.9 0.0 9.1e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|118430916|ref|NP_147018.2| - 0.00085 18.4 0.2 0.0028 16.7 0.1 1.9 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|118430916|ref|NP_147018.2| - 0.031 13.4 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Gp_dh_N PF00044.19 gi|118430917|ref|NP_147019.2| - 3.6e-22 78.9 0.1 1.8e-21 76.6 0.0 2.1 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|118430917|ref|NP_147019.2| - 1.7e-17 63.3 0.1 2.5e-17 62.7 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|118430917|ref|NP_147019.2| - 1.9e-11 43.9 0.1 5.2e-11 42.5 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|118430917|ref|NP_147019.2| - 3.3e-05 24.3 0.1 0.00018 21.9 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|118430917|ref|NP_147019.2| - 0.00041 19.5 0.7 0.35 10.0 0.2 2.8 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|118430917|ref|NP_147019.2| - 0.0076 16.5 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PGK PF00162.14 gi|118430918|ref|NP_147020.2| - 2.2e-103 345.8 0.0 2.5e-103 345.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lactamase_B_3 PF13483.1 gi|118430919|ref|NP_147021.2| - 2.8e-34 118.1 0.1 3.5e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|118430919|ref|NP_147021.2| - 2.2e-12 46.9 0.8 5.1e-11 42.4 0.6 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|118430919|ref|NP_147021.2| - 0.56 9.8 5.7 2.9 7.4 1.9 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily MoeA_N PF03453.12 gi|14600506|ref|NP_147022.1| - 2.6e-34 117.9 0.0 4.7e-34 117.0 0.0 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|14600506|ref|NP_147022.1| - 2.3e-14 52.9 0.0 7.9e-14 51.2 0.0 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain MobB PF03205.9 gi|118430920|ref|NP_147023.2| - 1.2e-33 115.7 0.2 1.4e-33 115.5 0.1 1.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|118430920|ref|NP_147023.2| - 1.7e-05 24.4 0.0 2e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain CbiA PF01656.18 gi|118430920|ref|NP_147023.2| - 1.8e-05 24.2 0.3 4.7e-05 22.8 0.2 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|118430920|ref|NP_147023.2| - 2.5e-05 24.3 0.2 5.2e-05 23.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|118430920|ref|NP_147023.2| - 0.00015 21.2 0.0 0.00024 20.6 0.0 1.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|118430920|ref|NP_147023.2| - 0.0003 20.9 0.0 0.00037 20.6 0.0 1.2 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|118430920|ref|NP_147023.2| - 0.0014 18.8 0.0 0.0016 18.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter LpxK PF02606.9 gi|118430920|ref|NP_147023.2| - 0.0017 17.3 0.9 0.0037 16.2 0.6 1.6 1 1 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_17 PF13207.1 gi|118430920|ref|NP_147023.2| - 0.0021 18.8 0.1 0.0038 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|118430920|ref|NP_147023.2| - 0.0023 17.4 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_26 PF13500.1 gi|118430920|ref|NP_147023.2| - 0.0025 17.4 0.3 0.046 13.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|118430920|ref|NP_147023.2| - 0.0027 17.5 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|118430920|ref|NP_147023.2| - 0.0044 16.7 0.0 0.0072 16.0 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase ATP_bind_1 PF03029.12 gi|118430920|ref|NP_147023.2| - 0.0068 15.9 0.2 0.045 13.2 0.3 1.9 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.15 gi|118430920|ref|NP_147023.2| - 0.0071 16.0 0.1 0.014 15.0 0.0 1.5 2 0 0 2 2 1 1 Adenylylsulphate kinase AAA PF00004.24 gi|118430920|ref|NP_147023.2| - 0.0092 16.1 0.0 0.012 15.8 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.1 gi|118430920|ref|NP_147023.2| - 0.0093 14.6 0.0 0.011 14.3 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|118430920|ref|NP_147023.2| - 0.01 15.5 0.4 0.019 14.6 0.3 1.6 1 1 0 1 1 1 0 Part of AAA domain PRK PF00485.13 gi|118430920|ref|NP_147023.2| - 0.011 15.3 0.2 0.13 11.7 0.1 2.0 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zot PF05707.7 gi|118430920|ref|NP_147023.2| - 0.011 15.2 0.2 0.076 12.4 0.1 2.0 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) NTPase_1 PF03266.10 gi|118430920|ref|NP_147023.2| - 0.012 15.3 0.4 0.031 14.0 0.1 1.7 2 0 0 2 2 2 0 NTPase Miro PF08477.8 gi|118430920|ref|NP_147023.2| - 0.021 15.3 0.4 0.029 14.8 0.3 1.5 1 1 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|118430920|ref|NP_147023.2| - 0.024 14.2 0.1 0.047 13.3 0.0 1.4 2 0 0 2 2 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|118430920|ref|NP_147023.2| - 0.025 14.5 0.3 0.058 13.3 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_11 PF13086.1 gi|118430920|ref|NP_147023.2| - 0.026 14.0 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|118430920|ref|NP_147023.2| - 0.028 13.9 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.17 gi|118430920|ref|NP_147023.2| - 0.028 13.8 0.1 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF2746 PF10874.3 gi|118430920|ref|NP_147023.2| - 0.031 14.4 0.1 0.068 13.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2746) AAA_30 PF13604.1 gi|118430920|ref|NP_147023.2| - 0.031 13.8 0.1 0.056 13.0 0.0 1.3 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|118430920|ref|NP_147023.2| - 0.032 13.3 0.0 0.048 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|118430920|ref|NP_147023.2| - 0.036 13.2 1.1 0.12 11.5 0.6 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|118430920|ref|NP_147023.2| - 0.037 14.3 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|118430920|ref|NP_147023.2| - 0.046 12.5 0.4 0.046 12.5 0.3 1.7 2 0 0 2 2 2 0 ArgK protein SMC_N PF02463.14 gi|118430920|ref|NP_147023.2| - 0.048 12.8 0.0 0.094 11.9 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|118430920|ref|NP_147023.2| - 0.055 12.3 0.1 0.16 10.8 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.1 gi|118430920|ref|NP_147023.2| - 0.064 12.8 0.1 0.1 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|118430920|ref|NP_147023.2| - 0.072 12.5 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|118430920|ref|NP_147023.2| - 0.074 12.4 0.2 0.21 10.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain RecA PF00154.16 gi|118430920|ref|NP_147023.2| - 0.1 11.6 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein TK PF00265.13 gi|118430920|ref|NP_147023.2| - 0.1 12.1 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 Thymidine kinase Abhydrolase_5 PF12695.2 gi|118430920|ref|NP_147023.2| - 0.13 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase family Pox_A32 PF04665.7 gi|118430920|ref|NP_147023.2| - 0.15 11.2 0.1 0.38 10.0 0.0 1.6 1 1 1 2 2 2 0 Poxvirus A32 protein MipZ PF09140.6 gi|118430920|ref|NP_147023.2| - 0.27 10.2 1.3 4 6.4 0.2 2.2 1 1 0 2 2 2 0 ATPase MipZ NTP_transf_3 PF12804.2 gi|14600508|ref|NP_147024.1| - 1e-20 74.3 0.7 1.7e-20 73.7 0.5 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|14600508|ref|NP_147024.1| - 0.0071 15.8 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ribosomal_L38e PF01781.13 gi|14600510|ref|NP_147026.1| - 1.9e-09 37.1 2.0 2.3e-09 36.8 1.4 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family LSM PF01423.17 gi|14600510|ref|NP_147026.1| - 0.047 13.2 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 LSM domain Beta-Casp PF10996.3 gi|14600511|ref|NP_147027.1| - 2.9e-21 75.7 0.0 4.5e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|14600511|ref|NP_147027.1| - 1.7e-18 66.9 1.7 3e-18 66.1 1.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|14600511|ref|NP_147027.1| - 3.5e-13 49.1 0.1 6.9e-13 48.1 0.1 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|14600511|ref|NP_147027.1| - 4.3e-13 49.2 0.0 5.9e-12 45.5 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|14600511|ref|NP_147027.1| - 0.00026 20.7 0.0 0.0031 17.2 0.0 2.2 1 1 1 2 2 2 2 Beta-lactamase superfamily domain DUF167 PF02594.11 gi|118430921|ref|NP_147028.2| - 2.4e-22 78.6 0.0 2.9e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Tub PF01167.13 gi|118430921|ref|NP_147028.2| - 0.088 11.7 0.0 0.088 11.7 0.0 1.1 1 0 0 1 1 1 0 Tub family TauE PF01925.14 gi|118430922|ref|NP_147029.2| - 1.6e-46 158.6 40.5 1.8e-46 158.5 28.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MFS_1 PF07690.11 gi|118430923|ref|NP_147030.2| - 9.2e-26 90.3 43.8 7e-15 54.5 20.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|118430923|ref|NP_147030.2| - 1.5e-09 36.7 25.1 3.7e-09 35.4 5.7 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein Nuc_H_symport PF03825.11 gi|118430923|ref|NP_147030.2| - 5.4e-05 22.1 17.0 8.9e-05 21.4 11.8 1.3 1 0 0 1 1 1 1 Nucleoside H+ symporter LacY_symp PF01306.14 gi|118430923|ref|NP_147030.2| - 6.1e-05 21.7 9.6 9e-05 21.1 6.6 1.3 1 0 0 1 1 1 1 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|118430923|ref|NP_147030.2| - 0.00025 20.7 2.7 0.0033 17.1 0.1 3.0 2 0 0 2 2 2 1 MFS_1 like family Sld5 PF05916.6 gi|14600516|ref|NP_147032.1| - 1.1e-09 38.4 0.2 1.5e-09 38.0 0.2 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.18 gi|118430924|ref|NP_147033.2| - 8.7e-136 452.0 0.0 1.1e-135 451.7 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|118430924|ref|NP_147033.2| - 1.7e-24 86.6 0.4 5.2e-24 85.0 0.1 2.1 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|118430924|ref|NP_147033.2| - 1e-07 31.3 0.0 2.2e-05 23.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|118430924|ref|NP_147033.2| - 4.5e-07 29.6 0.0 1e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RPA_C PF08784.6 gi|118430924|ref|NP_147033.2| - 0.0021 18.4 0.0 0.005 17.2 0.0 1.6 1 0 0 1 1 1 1 Replication protein A C terminal AAA_3 PF07726.6 gi|118430924|ref|NP_147033.2| - 0.0055 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.14 gi|118430924|ref|NP_147033.2| - 0.045 13.4 0.1 0.098 12.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEAD PF00270.24 gi|118430925|ref|NP_147034.2| - 4.1e-21 75.1 0.0 7.4e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|118430925|ref|NP_147034.2| - 7.4e-14 51.6 0.7 3.2e-12 46.4 0.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|118430925|ref|NP_147034.2| - 6.5e-13 48.3 0.0 1.3e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH PF00633.18 gi|118430925|ref|NP_147034.2| - 2.4e-09 36.3 0.0 1.7e-05 24.2 0.0 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif ResIII PF04851.10 gi|118430925|ref|NP_147034.2| - 3.2e-09 36.9 0.0 7.4e-09 35.6 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|118430925|ref|NP_147034.2| - 5.2e-08 32.6 0.0 3.7e-07 29.9 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|118430925|ref|NP_147034.2| - 8.2e-05 22.0 0.0 0.0003 20.2 0.0 2.0 2 1 0 2 2 1 1 Fingers domain of DNA polymerase lambda Flavi_DEAD PF07652.9 gi|118430925|ref|NP_147034.2| - 0.00039 20.1 0.0 0.0028 17.4 0.0 2.2 2 0 0 2 2 2 1 Flavivirus DEAD domain IstB_IS21 PF01695.12 gi|118430925|ref|NP_147034.2| - 0.0004 19.8 0.1 0.0013 18.1 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein HHH_3 PF12836.2 gi|118430925|ref|NP_147034.2| - 0.00055 19.8 0.0 0.017 15.0 0.0 2.8 3 0 0 3 3 2 1 Helix-hairpin-helix motif DUF4332 PF14229.1 gi|118430925|ref|NP_147034.2| - 0.00058 19.8 0.0 0.0023 17.8 0.0 2.0 2 0 0 2 2 1 1 Domain of unknown function (DUF4332) AAA_10 PF12846.2 gi|118430925|ref|NP_147034.2| - 0.003 17.0 0.0 0.019 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|118430925|ref|NP_147034.2| - 0.0054 16.1 0.1 0.023 14.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|118430925|ref|NP_147034.2| - 0.011 14.6 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Cdd1 PF11731.3 gi|118430925|ref|NP_147034.2| - 0.012 15.4 0.0 0.19 11.6 0.0 2.6 2 1 1 3 3 2 0 Pathogenicity locus PhoH PF02562.11 gi|118430925|ref|NP_147034.2| - 0.02 14.1 0.0 0.038 13.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|118430925|ref|NP_147034.2| - 0.022 14.5 7.3 0.022 14.4 0.1 3.4 3 0 0 3 3 3 0 Part of AAA domain HHH_8 PF14716.1 gi|118430925|ref|NP_147034.2| - 0.026 14.7 0.0 0.11 12.6 0.0 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|118430925|ref|NP_147034.2| - 0.031 14.4 0.1 0.68 10.0 0.0 2.9 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|118430925|ref|NP_147034.2| - 0.034 13.5 0.0 0.083 12.3 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.24 gi|118430925|ref|NP_147034.2| - 0.051 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sec63 PF02889.11 gi|118430925|ref|NP_147034.2| - 0.088 12.0 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Sec63 Brl domain UvrD-helicase PF00580.16 gi|118430925|ref|NP_147034.2| - 0.19 10.9 0.8 0.51 9.5 0.1 1.8 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Herpes_ori_bp PF02399.10 gi|118430925|ref|NP_147034.2| - 0.7 7.7 1.3 3.2 5.5 0.9 1.8 1 1 0 1 1 1 0 Origin of replication binding protein Saccharop_dh PF03435.13 gi|14602185|ref|NP_147035.1| - 4.8e-10 38.9 0.0 7.1e-10 38.4 0.0 1.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|14602185|ref|NP_147035.1| - 1.1e-05 24.8 0.0 2.2e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|14602185|ref|NP_147035.1| - 0.00014 21.5 0.0 0.00033 20.3 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|14602185|ref|NP_147035.1| - 0.00019 21.2 0.3 0.00047 20.0 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|14602185|ref|NP_147035.1| - 0.0026 17.7 0.0 0.0042 17.0 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain DAO PF01266.19 gi|14602185|ref|NP_147035.1| - 0.003 16.5 0.4 0.0055 15.6 0.2 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|14602185|ref|NP_147035.1| - 0.0096 15.9 1.0 0.16 12.0 0.3 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|14602185|ref|NP_147035.1| - 0.011 15.1 0.1 0.02 14.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|14602185|ref|NP_147035.1| - 0.028 13.7 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|14602185|ref|NP_147035.1| - 0.04 13.9 0.8 0.14 12.1 0.3 2.0 2 1 1 3 3 3 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|14602185|ref|NP_147035.1| - 0.043 12.9 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|14602185|ref|NP_147035.1| - 0.087 11.8 0.1 0.13 11.2 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.16 gi|14602185|ref|NP_147035.1| - 0.19 11.5 0.1 0.31 10.8 0.1 1.3 1 0 0 1 1 1 0 ThiF family HTH_AsnC-type PF13404.1 gi|118430926|ref|YP_874804.1| - 0.011 15.2 0.3 0.018 14.5 0.2 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RuvB_C PF05491.8 gi|118430926|ref|YP_874804.1| - 0.067 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus DUF746 PF05344.6 gi|118430926|ref|YP_874804.1| - 0.077 12.5 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) Tail_P2_I PF09684.5 gi|118430926|ref|YP_874804.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) HTH_31 PF13560.1 gi|118430927|ref|NP_147038.2| - 7.7e-08 32.4 0.0 2e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|118430927|ref|NP_147038.2| - 1.2e-06 28.4 0.0 2.3e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|118430927|ref|NP_147038.2| - 4.7e-06 26.3 0.0 1.7e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_38 PF13936.1 gi|118430927|ref|NP_147038.2| - 0.025 14.1 0.0 0.058 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2493 PF10686.4 gi|118430927|ref|NP_147038.2| - 0.065 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) HTH_37 PF13744.1 gi|118430927|ref|NP_147038.2| - 0.079 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|118430927|ref|NP_147038.2| - 0.1 12.2 0.0 0.41 10.3 0.0 2.2 3 0 0 3 3 3 0 MarR family Sigma70_r4 PF04545.11 gi|118430927|ref|NP_147038.2| - 0.12 11.7 0.1 0.36 10.1 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 UBA PF00627.26 gi|118430928|ref|NP_147039.2| - 1.3e-08 34.4 0.5 2.8e-08 33.3 0.3 1.6 1 0 0 1 1 1 1 UBA/TS-N domain NAC PF01849.13 gi|118430928|ref|NP_147039.2| - 0.00083 18.8 0.0 0.0019 17.7 0.0 1.7 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.1 gi|118430928|ref|NP_147039.2| - 0.036 13.6 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain PMT_2 PF13231.1 gi|118430929|ref|NP_147040.2| - 2.7e-07 30.6 12.0 2.7e-07 30.6 8.3 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|118430929|ref|NP_147040.2| - 0.00036 19.9 8.5 0.00036 19.9 5.9 2.9 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TusA PF01206.12 gi|14600524|ref|NP_147041.1| - 0.13 11.8 0.0 0.65 9.6 0.0 2.1 3 0 0 3 3 3 0 Sulfurtransferase TusA tRNA_bind_2 PF13725.1 gi|14600524|ref|NP_147041.1| - 0.16 12.1 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Possible tRNA binding domain NAD_binding_8 PF13450.1 gi|118430930|ref|NP_147042.2| - 0.00092 19.1 0.5 0.0025 17.7 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|118430930|ref|NP_147042.2| - 0.033 14.0 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|118430930|ref|NP_147042.2| - 0.033 13.8 0.1 0.049 13.2 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amidase PF01425.16 gi|118430930|ref|NP_147042.2| - 0.14 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Amidase Zip PF02535.17 gi|118430932|ref|NP_147044.2| - 2.3e-06 26.8 12.5 8.9e-06 24.9 2.2 2.7 2 1 1 3 3 3 2 ZIP Zinc transporter Form_Nir_trans PF01226.12 gi|118430932|ref|NP_147044.2| - 0.042 12.7 0.5 0.042 12.7 0.4 3.2 2 2 1 3 3 3 0 Formate/nitrite transporter PTS_2-RNA PF01885.11 gi|118430933|ref|NP_147045.2| - 7.5e-40 136.2 0.0 9.3e-40 135.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Auto_anti-p27 PF06677.7 gi|14600529|ref|NP_147046.1| - 5e-20 70.9 1.0 8.3e-20 70.2 0.7 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cupin_6 PF12852.2 gi|14600529|ref|NP_147046.1| - 0.044 13.3 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Cupin Peptidase_M50 PF02163.17 gi|118430934|ref|NP_147048.2| - 8.8e-16 57.4 5.3 8.8e-16 57.4 3.7 2.6 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|118430934|ref|NP_147048.2| - 1.8e-08 34.1 1.4 3.7e-08 33.1 0.0 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|118430934|ref|NP_147048.2| - 4.7e-05 23.4 0.0 0.00012 22.1 0.0 1.7 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_M50B PF13398.1 gi|118430934|ref|NP_147048.2| - 0.017 14.4 0.2 0.017 14.4 0.1 2.7 3 1 0 3 3 3 0 Peptidase M50B-like PDZ_1 PF12812.2 gi|118430934|ref|NP_147048.2| - 0.025 14.4 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 PDZ-like domain Tricorn_PDZ PF14685.1 gi|118430934|ref|NP_147048.2| - 0.038 13.7 0.1 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Tricorn protease PDZ domain GRASP55_65 PF04495.9 gi|118430934|ref|NP_147048.2| - 0.08 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain PfkB PF00294.19 gi|118430935|ref|NP_147049.2| - 6.8e-08 31.9 0.0 4.5e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Peptidase_M16 PF00675.15 gi|118430936|ref|NP_147050.2| - 1.9e-21 76.3 0.0 3.1e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|118430936|ref|NP_147050.2| - 1.2e-19 70.6 0.0 1.9e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase M16 inactive domain NTP_transf_2 PF01909.18 gi|118430937|ref|NP_147051.2| - 1.4e-08 34.9 0.0 2.4e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_24 PF13412.1 gi|118430937|ref|NP_147051.2| - 0.03 13.7 0.1 0.067 12.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_8 PF02954.14 gi|118430937|ref|NP_147051.2| - 0.065 12.7 0.0 0.79 9.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF294 PF03445.8 gi|118430937|ref|NP_147051.2| - 0.069 12.7 0.0 0.14 11.7 0.0 1.6 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Sigma70_r4 PF04545.11 gi|118430937|ref|NP_147051.2| - 0.092 12.0 4.2 0.17 11.2 0.4 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 Methyltransf_11 PF08241.7 gi|118430939|ref|NP_147054.2| - 9.2e-15 54.9 0.0 1.9e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|118430939|ref|NP_147054.2| - 4.2e-09 36.1 0.0 5.6e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|118430939|ref|NP_147054.2| - 6e-09 35.8 0.0 7.7e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|118430939|ref|NP_147054.2| - 1.4e-07 31.7 0.0 2.5e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|118430939|ref|NP_147054.2| - 4.4e-07 30.2 0.0 7.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|118430939|ref|NP_147054.2| - 6.4e-07 29.9 0.0 8.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|118430939|ref|NP_147054.2| - 2.6e-06 27.4 0.0 4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|118430939|ref|NP_147054.2| - 1.6e-05 24.1 0.0 2e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|118430939|ref|NP_147054.2| - 0.0009 18.6 0.0 0.0016 17.8 0.0 1.6 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|118430939|ref|NP_147054.2| - 0.083 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|118430939|ref|NP_147054.2| - 0.12 11.0 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Ribosomal_L2_C PF03947.13 gi|14600538|ref|NP_147055.1| - 2.6e-44 150.1 0.4 3.5e-44 149.7 0.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|14600538|ref|NP_147055.1| - 4.8e-14 52.0 0.0 1e-13 51.0 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain AAA_10 PF12846.2 gi|14600539|ref|NP_147056.1| - 3e-17 63.0 0.0 4.5e-10 39.4 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|14600539|ref|NP_147056.1| - 3.2e-06 26.7 0.0 0.00016 21.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|14600539|ref|NP_147056.1| - 5.7e-06 24.9 0.0 0.0059 15.0 0.0 2.4 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|14600539|ref|NP_147056.1| - 1.5e-05 24.9 0.0 2.3e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|14600539|ref|NP_147056.1| - 0.00015 21.9 0.0 0.00034 20.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|14600539|ref|NP_147056.1| - 0.00033 19.4 0.0 0.0076 14.9 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|14600539|ref|NP_147056.1| - 0.00039 20.0 0.1 0.0016 18.1 0.1 2.1 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|14600539|ref|NP_147056.1| - 0.002 17.5 0.1 0.0092 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|14600539|ref|NP_147056.1| - 0.0029 17.4 0.0 0.049 13.4 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|14600539|ref|NP_147056.1| - 0.016 14.8 0.1 0.032 13.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|14600539|ref|NP_147056.1| - 0.049 13.6 0.8 0.16 11.9 0.1 2.2 2 1 0 2 2 2 0 AAA ATPase domain T4SS-DNA_transf PF02534.9 gi|14600539|ref|NP_147056.1| - 0.057 11.9 0.0 0.081 11.4 0.0 1.1 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer T2SE PF00437.15 gi|14600539|ref|NP_147056.1| - 0.17 10.7 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein TraG-D_C PF12696.2 gi|14600539|ref|NP_147056.1| - 0.17 11.7 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG IstB_IS21 PF01695.12 gi|14600539|ref|NP_147056.1| - 0.18 11.2 0.0 0.37 10.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF340 PF03956.8 gi|118430940|ref|YP_874805.1| - 0.021 14.1 0.3 0.024 13.9 0.2 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function (DUF340) DUF3311 PF11755.3 gi|118430940|ref|YP_874805.1| - 3.3 7.3 7.3 0.49 9.9 0.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3311) DUF2953 PF11167.3 gi|118430940|ref|YP_874805.1| - 8.8 6.3 6.7 2.9 7.8 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) PEP_mutase PF13714.1 gi|118430941|ref|NP_147059.2| - 4.5e-57 193.0 2.0 5.3e-57 192.7 1.4 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|118430941|ref|NP_147059.2| - 9.7e-16 57.0 2.1 5.4e-15 54.5 1.0 1.9 1 1 1 2 2 2 2 Isocitrate lyase family Methyltrn_RNA_3 PF02598.12 gi|118430942|ref|NP_147061.2| - 6e-42 143.9 0.0 7.7e-42 143.6 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|118430942|ref|NP_147061.2| - 0.055 13.3 0.0 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 SpoU rRNA Methylase family Ribosomal_L3 PF00297.17 gi|14600545|ref|NP_147062.1| - 1.2e-62 211.7 0.0 1.3e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|118430943|ref|NP_147063.2| - 3.4e-39 134.2 0.3 4e-39 133.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|118430944|ref|NP_147064.2| - 2.8e-18 65.6 3.5 7.2e-18 64.3 2.4 1.6 1 1 0 1 1 1 1 Ribosomal protein L23 DNA_mis_repair PF01119.14 gi|118430944|ref|NP_147064.2| - 0.035 13.5 0.1 0.041 13.3 0.0 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain TusA PF01206.12 gi|118430944|ref|NP_147064.2| - 0.11 12.1 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA ParA PF10609.4 gi|118430945|ref|NP_147065.2| - 2.1e-28 97.9 0.3 9.3e-28 95.9 0.0 2.1 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|118430945|ref|NP_147065.2| - 1.2e-16 60.7 0.1 2.3e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|118430945|ref|NP_147065.2| - 4.4e-10 39.1 0.2 0.00012 21.4 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|118430945|ref|NP_147065.2| - 2.5e-07 30.7 0.0 1.1e-06 28.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|118430945|ref|NP_147065.2| - 1.7e-05 24.5 0.3 0.002 17.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|118430945|ref|NP_147065.2| - 6e-05 22.5 0.0 0.00023 20.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|118430945|ref|NP_147065.2| - 6.7e-05 22.0 0.0 0.00011 21.3 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.6 gi|118430945|ref|NP_147065.2| - 0.00018 20.7 0.1 0.00033 19.8 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|118430945|ref|NP_147065.2| - 0.00024 20.2 0.6 0.0022 17.0 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase ArgK PF03308.11 gi|118430945|ref|NP_147065.2| - 0.012 14.3 0.3 0.055 12.2 0.1 1.9 2 0 0 2 2 2 0 ArgK protein YhjQ PF06564.7 gi|118430945|ref|NP_147065.2| - 0.013 14.8 0.1 0.078 12.3 0.1 2.0 2 0 0 2 2 2 0 YhjQ protein AAA_30 PF13604.1 gi|118430945|ref|NP_147065.2| - 0.015 14.8 0.2 0.023 14.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain MtrA PF04208.9 gi|118430945|ref|NP_147065.2| - 0.022 14.2 0.1 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit A IstB_IS21 PF01695.12 gi|118430945|ref|NP_147065.2| - 0.04 13.3 0.0 0.086 12.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|118430945|ref|NP_147065.2| - 0.046 13.1 0.1 0.064 12.6 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain PhoH PF02562.11 gi|118430945|ref|NP_147065.2| - 0.072 12.3 0.2 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|118430945|ref|NP_147065.2| - 0.15 11.8 0.5 0.67 9.7 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain DASH_Dad3 PF08656.5 gi|118430945|ref|NP_147065.2| - 0.16 11.7 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Dad3 CBS PF00571.23 gi|14600549|ref|NP_147066.1| - 5.6e-55 182.8 15.0 5.9e-17 61.1 0.5 4.1 4 0 0 4 4 4 4 CBS domain DUF2786 PF10979.3 gi|14600549|ref|NP_147066.1| - 0.032 13.9 0.8 6 6.6 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) CBS PF00571.23 gi|14600550|ref|NP_147067.1| - 7.2e-49 163.3 10.9 4.3e-13 48.8 0.5 4.2 4 0 0 4 4 4 4 CBS domain S4_2 PF13275.1 gi|14600550|ref|NP_147067.1| - 0.057 13.0 0.7 0.14 11.7 0.1 1.9 2 0 0 2 2 2 0 S4 domain CBS PF00571.23 gi|14600551|ref|NP_147068.1| - 9.4e-46 153.3 11.8 1.2e-12 47.3 0.8 4.1 4 0 0 4 4 4 4 CBS domain Oxidored_nitro PF00148.14 gi|14600551|ref|NP_147068.1| - 0.092 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AIRS PF00586.19 gi|118430946|ref|NP_147069.2| - 9.9e-05 22.5 0.2 0.00023 21.3 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TP_methylase PF00590.15 gi|118430947|ref|NP_147070.2| - 9.2e-43 146.3 0.3 1.1e-42 146.0 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Chlor_dismutase PF06778.7 gi|118430948|ref|NP_147071.2| - 6.7e-51 172.7 0.0 8.1e-51 172.4 0.0 1.0 1 0 0 1 1 1 1 Chlorite dismutase CAP18_C PF12153.3 gi|14600555|ref|NP_147072.1| - 0.11 12.1 0.5 0.11 12.1 0.4 2.2 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) DUF4097 PF13349.1 gi|14600557|ref|NP_147074.1| - 0.028 13.9 0.2 0.061 12.8 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) Crystall_2 PF09076.5 gi|14600557|ref|NP_147074.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Beta/Gamma crystallin DUF2057 PF09829.4 gi|14600557|ref|NP_147074.1| - 0.12 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2057) HMA PF00403.21 gi|14600557|ref|NP_147074.1| - 1.3 9.2 4.3 19 5.4 0.0 3.4 3 1 1 4 4 4 0 Heavy-metal-associated domain BON PF04972.12 gi|14600557|ref|NP_147074.1| - 2.1 8.1 5.8 1.6 8.5 0.0 3.4 4 1 1 5 5 5 0 BON domain PSII_Pbs27 PF13326.1 gi|118430949|ref|YP_874806.1| - 0.035 14.0 0.2 0.085 12.8 0.2 1.5 1 1 1 2 2 2 0 Photosystem II Pbs27 NUFIP1 PF10453.4 gi|118430949|ref|YP_874806.1| - 0.075 12.5 0.2 0.15 11.5 0.1 1.6 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) SnAC PF14619.1 gi|118430949|ref|YP_874806.1| - 0.6 10.3 3.4 0.83 9.8 2.4 1.6 1 1 0 1 1 1 0 Snf2-ATP coupling, chromatin remodelling complex zf-B_box PF00643.19 gi|118430950|ref|NP_147076.2| - 0.00064 19.5 5.7 0.00064 19.5 4.0 3.7 2 1 2 4 4 4 3 B-box zinc finger C6_DPF PF10170.4 gi|118430950|ref|NP_147076.2| - 0.0047 16.9 0.9 0.0047 16.9 0.6 2.5 1 1 1 2 2 2 1 Cysteine-rich domain DZR PF12773.2 gi|118430950|ref|NP_147076.2| - 0.3 10.9 22.9 0.35 10.7 5.5 3.1 1 1 2 3 3 3 0 Double zinc ribbon Thioredoxin_8 PF13905.1 gi|14600560|ref|NP_147077.1| - 0.0011 19.0 0.1 0.12 12.4 0.1 2.2 1 1 1 2 2 2 2 Thioredoxin-like Redoxin PF08534.5 gi|14600560|ref|NP_147077.1| - 0.0012 18.3 0.2 0.005 16.3 0.1 1.8 1 1 1 2 2 2 1 Redoxin Thioredoxin PF00085.15 gi|14600560|ref|NP_147077.1| - 0.0023 17.5 0.1 0.0052 16.4 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|14600560|ref|NP_147077.1| - 0.0033 17.6 0.0 0.0051 16.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain SNO PF01174.14 gi|118430951|ref|NP_147078.2| - 4e-50 170.0 0.0 4.5e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|118430951|ref|NP_147078.2| - 1.9e-09 37.2 0.0 2.9e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|118430951|ref|NP_147078.2| - 1.1e-08 34.8 0.0 1.4e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|118430951|ref|NP_147078.2| - 2.6e-06 27.2 0.0 3.1e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|118430951|ref|NP_147078.2| - 0.14 11.5 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family SOR_SNZ PF01680.12 gi|118430952|ref|NP_147079.2| - 2.1e-91 305.1 3.4 3.1e-91 304.6 2.3 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|118430952|ref|NP_147079.2| - 4e-05 22.8 0.6 4e-05 22.8 0.4 2.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|118430952|ref|NP_147079.2| - 0.0012 18.2 1.2 0.48 9.6 0.1 3.2 2 1 1 3 3 3 2 Histidine biosynthesis protein NMO PF03060.10 gi|118430952|ref|NP_147079.2| - 0.0013 17.9 7.1 0.0021 17.2 0.2 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.12 gi|118430952|ref|NP_147079.2| - 0.003 16.4 0.7 0.29 9.9 0.1 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|118430952|ref|NP_147079.2| - 0.0067 15.5 0.0 0.13 11.2 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|118430952|ref|NP_147079.2| - 0.0076 15.2 0.3 0.41 9.5 0.0 2.4 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase VitK2_biosynth PF02621.9 gi|118430953|ref|NP_147080.2| - 6e-76 254.9 0.0 6.8e-76 254.7 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Radical_SAM PF04055.16 gi|118430954|ref|NP_147081.2| - 1.2e-17 64.5 0.0 1.8e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily TrmB PF01978.14 gi|118430954|ref|NP_147081.2| - 0.047 13.4 0.1 1.4 8.6 0.0 2.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Fer4_14 PF13394.1 gi|118430954|ref|NP_147081.2| - 0.067 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|14600565|ref|NP_147082.1| - 7.3e-15 55.5 0.1 1.2e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.9 gi|14600566|ref|NP_147083.1| - 6.1e-11 41.9 0.0 8.3e-11 41.5 0.0 1.3 1 1 0 1 1 1 1 Menaquinone biosynthesis NTP_transferase PF00483.18 gi|118430955|ref|NP_147084.2| - 1.6e-26 93.0 0.0 1.9e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|118430955|ref|NP_147084.2| - 1.6e-14 54.3 0.0 1.9e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF359 PF04019.7 gi|14600568|ref|NP_147085.1| - 1.4e-31 108.4 0.0 1.8e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) IspD PF01128.14 gi|14600568|ref|NP_147085.1| - 0.026 14.0 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Spt4 PF06093.8 gi|118430956|ref|NP_147086.2| - 2.4e-11 43.3 0.1 2.9e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.1 gi|118430956|ref|NP_147086.2| - 3.3e-07 29.3 2.3 4.2e-07 28.9 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|118430956|ref|NP_147086.2| - 1e-05 25.2 0.2 1.1e-05 25.1 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|118430956|ref|NP_147086.2| - 7.5e-05 22.0 4.2 0.00012 21.4 2.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|118430956|ref|NP_147086.2| - 0.0001 21.9 4.5 0.00016 21.2 3.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|118430956|ref|NP_147086.2| - 0.00025 20.2 1.9 0.022 14.0 0.2 2.4 2 1 0 2 2 2 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|118430956|ref|NP_147086.2| - 0.0017 17.7 1.4 0.072 12.5 0.1 2.1 2 0 0 2 2 2 1 A2L zinc ribbon domain DUF35_N PF12172.3 gi|118430956|ref|NP_147086.2| - 0.0026 17.6 1.4 0.0039 17.0 1.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|118430956|ref|NP_147086.2| - 0.016 15.1 3.5 2 8.4 3.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|118430956|ref|NP_147086.2| - 0.026 14.1 0.2 0.031 13.9 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|118430956|ref|NP_147086.2| - 0.037 13.6 0.8 0.052 13.2 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NOB1_Zn_bind PF08772.6 gi|118430956|ref|NP_147086.2| - 0.049 13.4 0.1 0.057 13.2 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-NADH-PPase PF09297.6 gi|118430956|ref|NP_147086.2| - 0.053 13.0 1.2 0.31 10.5 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2072 PF09845.4 gi|118430956|ref|NP_147086.2| - 0.059 13.3 0.1 0.059 13.3 0.1 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) NRDD PF13597.1 gi|118430956|ref|NP_147086.2| - 0.061 11.3 0.3 0.072 11.1 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase GFA PF04828.9 gi|118430956|ref|NP_147086.2| - 0.1 12.5 1.4 2.7 8.0 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|118430956|ref|NP_147086.2| - 0.11 12.4 0.4 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-HYPF PF07503.7 gi|118430956|ref|NP_147086.2| - 0.14 11.5 1.5 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 HypF finger DNA_RNApol_7kD PF03604.8 gi|118430956|ref|NP_147086.2| - 0.27 10.7 2.0 3.8 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|118430956|ref|NP_147086.2| - 0.28 10.8 3.7 1.6 8.4 0.3 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|118430956|ref|NP_147086.2| - 0.36 10.8 3.3 3 7.9 2.3 2.1 1 1 0 1 1 1 0 zinc-finger Prok-RING_1 PF14446.1 gi|118430956|ref|NP_147086.2| - 0.39 10.4 3.5 1.9 8.2 2.4 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1610 PF07754.6 gi|118430956|ref|NP_147086.2| - 0.43 10.7 6.2 4.3 7.5 4.3 2.6 2 1 0 2 2 1 0 Domain of unknown function (DUF1610) Lar_restr_allev PF14354.1 gi|118430956|ref|NP_147086.2| - 0.49 10.7 3.0 3.6 7.9 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|118430956|ref|NP_147086.2| - 0.58 9.8 2.5 11 5.7 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.12 gi|118430956|ref|NP_147086.2| - 0.9 9.1 3.8 4.1 7.0 0.4 2.1 1 1 1 2 2 2 0 Ribosomal protein S27 Nudix_N_2 PF14803.1 gi|118430956|ref|NP_147086.2| - 1.1 9.0 3.3 10 5.9 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|118430956|ref|NP_147086.2| - 1.2 9.0 4.6 0.97 9.2 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|118430956|ref|NP_147086.2| - 1.6 8.1 7.5 0.51 9.7 0.4 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Auto_anti-p27 PF06677.7 gi|118430956|ref|NP_147086.2| - 2 8.2 4.6 8.2 6.2 3.4 1.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SHS2_Rpb7-N PF03876.12 gi|14600570|ref|NP_147087.1| - 2.1e-12 46.9 0.0 3.4e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|14600570|ref|NP_147087.1| - 1.3e-09 38.0 0.6 2.7e-09 36.9 0.4 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Fer4_18 PF13746.1 gi|14600571|ref|NP_147088.1| - 4e-06 27.1 0.5 4.7e-06 26.9 0.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|14600571|ref|NP_147088.1| - 7.6e-06 25.8 0.2 9.7e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|14600571|ref|NP_147088.1| - 0.0001 21.7 3.6 0.00014 21.2 2.5 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|14600571|ref|NP_147088.1| - 0.00011 22.3 0.3 0.00013 22.1 0.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|14600571|ref|NP_147088.1| - 0.00019 21.1 0.1 0.00019 21.1 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|14600571|ref|NP_147088.1| - 0.00036 20.8 0.1 0.00045 20.5 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|14600571|ref|NP_147088.1| - 0.0004 20.7 0.3 0.00049 20.4 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|14600571|ref|NP_147088.1| - 0.00046 19.9 0.4 0.00055 19.7 0.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|14600571|ref|NP_147088.1| - 0.0023 17.7 2.8 0.0031 17.3 2.0 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|14600571|ref|NP_147088.1| - 0.0038 17.6 5.0 0.0051 17.2 3.5 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|14600571|ref|NP_147088.1| - 0.012 15.8 1.9 0.017 15.4 1.3 1.2 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|14600571|ref|NP_147088.1| - 0.013 16.2 0.1 0.013 16.2 0.1 1.2 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|14600571|ref|NP_147088.1| - 0.018 14.6 0.1 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SCO1-SenC PF02630.9 gi|14600571|ref|NP_147088.1| - 0.034 13.7 0.0 0.034 13.7 0.0 1.0 1 0 0 1 1 1 0 SCO1/SenC Fer4_6 PF12837.2 gi|14600571|ref|NP_147088.1| - 0.034 14.0 3.6 0.05 13.4 2.5 1.2 1 0 0 1 1 1 0 4Fe-4S binding domain DUF162 PF02589.10 gi|118430957|ref|NP_147089.2| - 5.2e-55 185.9 2.3 9.1e-55 185.1 1.6 1.4 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DHO_dh PF01180.16 gi|118430958|ref|NP_147090.2| - 1.7e-51 174.9 0.0 1.9e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|118430958|ref|NP_147090.2| - 4.9e-07 28.8 0.0 2.3e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.1 gi|118430958|ref|NP_147090.2| - 0.00061 19.0 1.7 0.48 9.5 0.0 3.1 2 1 0 3 3 3 2 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.16 gi|118430958|ref|NP_147090.2| - 0.0026 17.0 1.2 0.027 13.7 0.0 2.7 2 1 0 3 3 3 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|118430958|ref|NP_147090.2| - 0.046 12.5 4.0 0.12 11.1 0.1 2.7 4 0 0 4 4 4 0 FMN-dependent dehydrogenase DHDPS PF00701.17 gi|118430958|ref|NP_147090.2| - 0.093 11.3 1.1 4.9 5.6 0.0 2.3 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family IMPDH PF00478.20 gi|118430958|ref|NP_147090.2| - 0.11 11.3 2.4 0.7 8.7 0.0 2.3 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|118430958|ref|NP_147090.2| - 0.13 11.2 0.3 0.85 8.6 0.0 2.2 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator NMO PF03060.10 gi|118430958|ref|NP_147090.2| - 0.49 9.4 14.9 0.029 13.5 0.8 3.0 2 1 0 3 3 3 0 Nitronate monooxygenase Amidohydro_4 PF13147.1 gi|118430959|ref|NP_147091.2| - 5e-14 53.0 3.5 7.9e-14 52.3 2.4 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|118430959|ref|NP_147091.2| - 4.7e-07 29.7 0.2 7.7e-07 29.0 0.1 1.4 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|118430959|ref|NP_147091.2| - 0.00025 20.8 0.0 0.00062 19.5 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.19 gi|118430959|ref|NP_147091.2| - 0.079 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel RINGv PF12906.2 gi|118430959|ref|NP_147091.2| - 0.097 12.7 1.1 0.2 11.7 0.7 1.4 1 0 0 1 1 1 0 RING-variant domain GDPD PF03009.12 gi|14600575|ref|NP_147092.1| - 6.1e-17 61.9 0.0 7e-15 55.2 0.0 2.0 1 1 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|14600575|ref|NP_147092.1| - 3.4e-05 23.8 0.6 9.1e-05 22.5 0.3 1.9 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family NMO PF03060.10 gi|14600575|ref|NP_147092.1| - 0.0046 16.1 0.1 0.0062 15.7 0.0 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase HAD PF12710.2 gi|14600575|ref|NP_147092.1| - 0.0059 16.7 0.0 0.011 15.8 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ADH_zinc_N PF00107.21 gi|14600575|ref|NP_147092.1| - 0.014 14.9 0.0 0.035 13.6 0.0 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase EAL PF00563.15 gi|14600575|ref|NP_147092.1| - 0.029 13.8 0.1 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 EAL domain TMP-TENI PF02581.12 gi|14600575|ref|NP_147092.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI NAD_binding_5 PF07994.7 gi|14600575|ref|NP_147092.1| - 0.13 11.7 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase Peptidase_S8 PF00082.17 gi|118430960|ref|NP_147093.2| - 2e-58 197.7 5.6 2.7e-58 197.3 3.9 1.1 1 0 0 1 1 1 1 Subtilase family Leu_Phe_trans PF03588.9 gi|118430960|ref|NP_147093.2| - 0.25 10.4 0.1 0.44 9.6 0.0 1.3 1 0 0 1 1 1 0 Leucyl/phenylalanyl-tRNA protein transferase EF-hand_5 PF13202.1 gi|118430960|ref|NP_147093.2| - 3.6 7.1 4.8 20 4.7 0.2 3.3 3 0 0 3 3 3 0 EF hand DUF4145 PF13643.1 gi|118430961|ref|NP_147094.2| - 0.00013 21.7 0.7 0.00021 21.0 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4145) Fis1_TPR_N PF14852.1 gi|14600578|ref|NP_147095.1| - 0.14 11.4 0.0 0.29 10.4 0.0 1.5 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat DUF3082 PF11282.3 gi|14600578|ref|NP_147095.1| - 0.85 9.7 4.3 1.2 9.2 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3082) CBS PF00571.23 gi|14600580|ref|NP_147097.1| - 5.5e-34 115.6 5.0 1.5e-17 63.1 1.1 2.1 2 0 0 2 2 2 2 CBS domain Robl_LC7 PF03259.12 gi|14600580|ref|NP_147097.1| - 0.016 14.7 0.2 5.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Roadblock/LC7 domain AFOR_C PF01314.13 gi|118430962|ref|NP_147096.2| - 1.8e-80 270.4 0.0 2.3e-80 270.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|118430962|ref|NP_147096.2| - 1.1e-60 204.4 0.0 1.7e-60 203.8 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF131 PF01998.12 gi|118430963|ref|NP_147099.2| - 9e-15 53.7 11.3 9e-15 53.7 7.9 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF131 DUF2768 PF10966.3 gi|118430963|ref|NP_147099.2| - 0.044 13.9 2.7 0.044 13.9 1.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2768) DUF872 PF05915.7 gi|118430963|ref|NP_147099.2| - 0.095 12.5 7.9 0.079 12.8 4.8 1.4 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF4131 PF13567.1 gi|118430963|ref|NP_147099.2| - 3.6 6.9 6.0 5.2 6.4 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4064 PF13273.1 gi|118430963|ref|NP_147099.2| - 5.9 7.0 10.4 16 5.6 7.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF1625 PF07787.7 gi|118430963|ref|NP_147099.2| - 9.1 5.4 9.1 23 4.0 6.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1625) BPD_transp_1 PF00528.17 gi|118430964|ref|NP_147101.2| - 7e-19 68.0 13.6 7e-19 68.0 9.4 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|118430965|ref|NP_147102.2| - 2.4e-22 79.7 0.0 2.8e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|118430965|ref|NP_147102.2| - 0.001 18.0 0.1 0.0013 17.7 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.2 gi|118430965|ref|NP_147102.2| - 0.0042 16.4 0.2 0.0061 15.9 0.1 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PIN PF01850.16 gi|14600586|ref|NP_147103.1| - 1.1e-20 74.1 0.2 1.4e-20 73.8 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|14600586|ref|NP_147103.1| - 0.00019 22.0 0.1 0.00027 21.5 0.0 1.3 1 1 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|118430966|ref|YP_874807.1| - 2.8e-21 75.3 4.4 3.2e-21 75.1 3.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Methyltransf_23 PF13489.1 gi|118430967|ref|YP_874808.1| - 0.00036 20.2 0.0 0.00043 20.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain N2227 PF07942.7 gi|118430967|ref|YP_874808.1| - 0.00038 19.5 0.2 0.00042 19.3 0.1 1.3 1 1 0 1 1 1 1 N2227-like protein Methyltransf_18 PF12847.2 gi|118430967|ref|YP_874808.1| - 0.038 14.5 0.0 0.067 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF218 PF02698.12 gi|118430967|ref|YP_874808.1| - 0.039 13.4 0.0 0.047 13.1 0.0 1.1 1 0 0 1 1 1 0 DUF218 domain CMAS PF02353.15 gi|118430967|ref|YP_874808.1| - 0.098 11.7 0.0 0.098 11.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|118430967|ref|YP_874808.1| - 0.15 11.2 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_11 PF08241.7 gi|118430967|ref|YP_874808.1| - 0.15 12.5 0.1 2 8.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain HhH-GPD PF00730.20 gi|118430968|ref|NP_147105.2| - 5.5e-06 26.6 0.0 8.2e-06 26.0 0.0 1.3 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|118430968|ref|NP_147105.2| - 0.0038 17.3 0.2 0.056 13.6 0.1 2.2 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|118430968|ref|NP_147105.2| - 0.024 14.5 0.1 3.3 7.7 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH PF00633.18 gi|118430968|ref|NP_147105.2| - 0.11 12.2 2.2 0.12 12.1 0.0 2.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF4393 PF14337.1 gi|118430968|ref|NP_147105.2| - 0.12 11.8 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) DUF2283 PF10049.4 gi|118430969|ref|YP_874809.1| - 5.7e-22 77.3 1.4 7e-22 77.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) PNP_UDP_1 PF01048.15 gi|118430970|ref|NP_147106.2| - 1.8e-08 33.6 0.0 2e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DUF724 PF05266.9 gi|118430970|ref|NP_147106.2| - 0.051 13.1 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3368 PF11848.3 gi|118430971|ref|NP_147107.2| - 5.4e-19 67.4 0.5 1.4e-18 66.1 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN PF01850.16 gi|118430971|ref|NP_147107.2| - 0.0056 17.0 1.7 0.73 10.1 0.7 2.9 2 1 0 2 2 2 1 PIN domain UPF0175 PF03683.8 gi|118430972|ref|YP_874810.1| - 4.7e-27 93.2 0.1 5.5e-27 93.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) zf-Mss51 PF13824.1 gi|118430972|ref|YP_874810.1| - 0.032 14.0 0.0 0.043 13.6 0.0 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 GIDA_assoc_3 PF13932.1 gi|118430972|ref|YP_874810.1| - 0.051 13.6 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 GidA associated domain 3 PIN_2 PF10130.4 gi|14600592|ref|NP_147109.1| - 2e-15 57.0 1.2 2.5e-15 56.6 0.8 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|14600592|ref|NP_147109.1| - 1.1e-09 38.9 0.3 1.3e-09 38.7 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|14600592|ref|NP_147109.1| - 0.0065 16.7 2.5 0.0092 16.3 1.8 1.2 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|14600592|ref|NP_147109.1| - 0.038 14.0 1.7 0.082 13.0 1.2 1.6 1 1 0 1 1 1 0 PIN domain PIN PF01850.16 gi|118430974|ref|NP_147110.2| - 1.9e-07 31.4 1.2 2.4e-07 31.0 0.8 1.1 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|118430975|ref|NP_147111.2| - 8.6e-21 73.7 1.6 1e-20 73.5 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 IMS_C PF11799.3 gi|118430975|ref|NP_147111.2| - 0.043 13.7 0.1 0.051 13.5 0.1 1.1 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain DUF4446 PF14584.1 gi|118430976|ref|NP_147114.2| - 9.9 5.9 6.4 5.8 6.7 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4446) DUF104 PF01954.11 gi|118430977|ref|YP_874812.1| - 4.7e-15 55.3 0.9 4.9e-15 55.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Cadherin PF00028.12 gi|118430977|ref|YP_874812.1| - 0.019 15.1 0.0 0.021 15.0 0.0 1.0 1 0 0 1 1 1 0 Cadherin domain Protoglobin PF11563.3 gi|14600601|ref|NP_147118.1| - 1.6e-36 125.3 0.0 1.8e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Protoglobin EcoEI_R_C PF08463.5 gi|14600601|ref|NP_147118.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 EcoEI R protein C-terminal HALZ PF02183.13 gi|14600601|ref|NP_147118.1| - 0.49 10.1 2.2 0.35 10.6 0.2 1.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper MarR_2 PF12802.2 gi|14600602|ref|NP_147119.1| - 3.2e-14 52.3 0.0 7.4e-14 51.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|14600602|ref|NP_147119.1| - 3.3e-10 40.1 0.0 5.2e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|14600602|ref|NP_147119.1| - 2e-09 37.0 0.0 3.6e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|14600602|ref|NP_147119.1| - 1.6e-06 27.7 0.1 1.9e-05 24.2 0.0 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|14600602|ref|NP_147119.1| - 2.1e-05 24.1 0.2 0.00013 21.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|14600602|ref|NP_147119.1| - 0.00013 21.7 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF1495 PF07381.6 gi|14600602|ref|NP_147119.1| - 0.0002 20.9 0.0 0.024 14.3 0.0 2.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_20 PF12840.2 gi|14600602|ref|NP_147119.1| - 0.0007 19.3 0.0 0.003 17.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|14600602|ref|NP_147119.1| - 0.0049 16.2 0.1 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|14600602|ref|NP_147119.1| - 0.01 15.5 0.0 0.052 13.3 0.0 2.3 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|14600602|ref|NP_147119.1| - 0.015 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|14600602|ref|NP_147119.1| - 0.036 13.8 0.0 0.48 10.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix LexA_DNA_bind PF01726.11 gi|14600602|ref|NP_147119.1| - 0.045 13.3 0.0 0.18 11.3 0.0 2.1 1 1 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.7 gi|14600602|ref|NP_147119.1| - 0.045 13.3 0.0 0.14 11.7 0.0 1.9 1 1 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.1 gi|14600602|ref|NP_147119.1| - 0.064 12.6 0.1 0.3 10.5 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|118430978|ref|NP_147120.2| - 4.7e-13 48.7 0.6 7.8e-13 48.0 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|118430978|ref|NP_147120.2| - 2.6e-07 30.2 2.2 3.9e-07 29.7 0.4 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|118430978|ref|NP_147120.2| - 2.7e-07 30.1 1.2 2e-06 27.3 0.9 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|118430978|ref|NP_147120.2| - 3.8e-06 26.9 0.7 1.1e-05 25.4 0.1 1.8 2 0 0 2 2 2 1 Penicillinase repressor TBPIP PF07106.8 gi|118430978|ref|NP_147120.2| - 0.0003 20.3 0.1 0.00038 20.0 0.1 1.2 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IF2_N PF04760.10 gi|118430978|ref|NP_147120.2| - 0.0025 17.4 0.9 0.94 9.1 0.0 2.7 2 1 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region FUR PF01475.14 gi|118430978|ref|NP_147120.2| - 0.013 15.4 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family DUF760 PF05542.6 gi|118430978|ref|NP_147120.2| - 0.034 14.3 0.2 0.33 11.1 0.1 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF760) EKR PF10371.4 gi|118430978|ref|NP_147120.2| - 0.055 13.0 0.3 0.18 11.4 0.0 1.9 3 0 0 3 3 3 0 Domain of unknown function HTH_38 PF13936.1 gi|118430978|ref|NP_147120.2| - 0.096 12.2 1.2 0.3 10.6 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain AhpC-TSA PF00578.16 gi|118430979|ref|YP_874813.1| - 0.047 13.3 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family AhpC-TSA PF00578.16 gi|14600604|ref|NP_147121.1| - 6.6e-30 103.3 0.0 7.5e-30 103.1 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|14600604|ref|NP_147121.1| - 7.7e-21 74.1 0.0 8.8e-21 73.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin GSHPx PF00255.14 gi|14600604|ref|NP_147121.1| - 0.059 12.7 0.0 0.09 12.1 0.0 1.4 1 1 0 1 1 1 0 Glutathione peroxidase DUF899 PF05988.7 gi|14600604|ref|NP_147121.1| - 0.13 11.6 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Lung_7-TM_R PF06814.8 gi|118430980|ref|YP_874814.1| - 0.12 11.2 1.1 0.14 11.0 0.7 1.2 1 0 0 1 1 1 0 Lung seven transmembrane receptor Pyridox_ox_2 PF12900.2 gi|118430980|ref|YP_874814.1| - 0.14 12.0 0.1 0.16 11.7 0.1 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Bax1-I PF01027.15 gi|118430980|ref|YP_874814.1| - 0.28 10.7 9.2 0.29 10.7 6.4 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF3995 PF13160.1 gi|118430980|ref|YP_874814.1| - 0.36 10.8 9.6 0.17 11.9 5.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) DUF2207 PF09972.4 gi|118430980|ref|YP_874814.1| - 0.4 9.2 3.5 0.41 9.1 2.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3487 PF11990.3 gi|118430980|ref|YP_874814.1| - 0.82 9.0 6.8 0.46 9.8 3.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3487) DUF308 PF03729.8 gi|118430980|ref|YP_874814.1| - 1.2 9.1 8.1 1.9 8.5 4.6 2.0 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF2157 PF09925.4 gi|118430980|ref|YP_874814.1| - 1.8 8.1 9.3 2.2 7.8 6.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Phage_holin_1 PF04531.8 gi|118430980|ref|YP_874814.1| - 2.4 8.3 4.5 1.9 8.6 2.1 1.6 1 1 1 2 2 2 0 Bacteriophage holin CopD PF05425.8 gi|118430980|ref|YP_874814.1| - 5.9 7.1 13.9 21 5.3 9.7 1.8 1 1 0 1 1 1 0 Copper resistance protein D DUF485 PF04341.7 gi|118430980|ref|YP_874814.1| - 9.6 5.9 12.4 1 9.1 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function, DUF485 HTH_5 PF01022.15 gi|14600606|ref|NP_147123.1| - 8e-10 38.2 0.6 1.1e-09 37.8 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|14600606|ref|NP_147123.1| - 1.6e-08 34.1 1.8 2.6e-08 33.5 1.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|14600606|ref|NP_147123.1| - 0.0002 20.9 0.0 0.00028 20.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|14600606|ref|NP_147123.1| - 0.00029 20.4 0.3 0.00049 19.7 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|14600606|ref|NP_147123.1| - 0.00081 18.7 0.1 0.0012 18.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|14600606|ref|NP_147123.1| - 0.0027 17.3 0.2 0.006 16.2 0.1 1.6 1 1 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|14600606|ref|NP_147123.1| - 0.0034 17.5 0.3 0.0046 17.0 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|14600606|ref|NP_147123.1| - 0.0064 16.0 0.1 0.013 15.0 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.7 gi|14600606|ref|NP_147123.1| - 0.015 14.9 0.1 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|14600606|ref|NP_147123.1| - 0.017 14.6 3.0 0.033 13.7 2.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|14600606|ref|NP_147123.1| - 0.044 13.6 0.0 0.055 13.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|14600606|ref|NP_147123.1| - 0.047 13.8 0.4 0.082 13.0 0.3 1.4 1 1 0 1 1 1 0 Transcriptional regulator DDE_Tnp_2 PF04693.7 gi|14600606|ref|NP_147123.1| - 0.05 12.5 0.0 0.058 12.4 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 HTH_9 PF08221.6 gi|14600606|ref|NP_147123.1| - 0.062 13.1 0.1 0.083 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|14600606|ref|NP_147123.1| - 0.12 12.3 0.1 0.26 11.2 0.0 1.5 1 1 1 2 2 2 0 Sulfolobus plasmid regulatory protein B-block_TFIIIC PF04182.7 gi|14600606|ref|NP_147123.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Cupredoxin_1 PF13473.1 gi|118430981|ref|NP_147124.2| - 3.4e-11 42.9 0.0 3.6e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|118430981|ref|NP_147124.2| - 3.3e-05 24.0 0.1 7.5e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.6 gi|118430981|ref|NP_147124.2| - 0.006 15.8 0.1 0.28 10.4 0.0 2.7 1 1 2 3 3 3 1 Sulfocyanin (SoxE) Cu-oxidase_2 PF07731.9 gi|118430981|ref|NP_147124.2| - 0.016 14.7 0.0 0.029 13.8 0.0 1.5 1 1 0 1 1 1 0 Multicopper oxidase DUF1573 PF07610.6 gi|118430981|ref|NP_147124.2| - 0.082 12.4 2.4 0.31 10.6 0.0 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF1573) COX2 PF00116.15 gi|118430981|ref|NP_147124.2| - 0.094 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain HTH_20 PF12840.2 gi|14600610|ref|NP_147127.1| - 0.00023 20.8 3.8 0.00023 20.8 2.7 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain Ribosomal_S19e PF01090.14 gi|14600610|ref|NP_147127.1| - 0.015 14.6 0.9 0.02 14.3 0.1 1.6 2 0 0 2 2 2 0 Ribosomal protein S19e DUF479 PF04336.7 gi|14600610|ref|NP_147127.1| - 0.079 13.0 0.5 0.14 12.3 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF479 HTH_41 PF14502.1 gi|14600610|ref|NP_147127.1| - 0.14 11.8 3.0 1.1 8.8 0.1 2.9 2 1 1 3 3 3 0 Helix-turn-helix domain HxlR PF01638.12 gi|14600610|ref|NP_147127.1| - 0.21 11.2 1.5 0.48 10.1 0.1 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF4423 PF14394.1 gi|14600610|ref|NP_147127.1| - 0.22 11.0 1.2 4.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.11 gi|14600610|ref|NP_147127.1| - 0.75 9.4 5.4 0.16 11.5 0.3 2.4 3 1 0 3 3 3 0 LexA DNA binding domain TrmB PF01978.14 gi|14600610|ref|NP_147127.1| - 1.4 8.6 5.4 0.38 10.4 0.7 2.3 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Sugarporin_N PF11471.3 gi|14600610|ref|NP_147127.1| - 1.5 8.5 7.4 2.4 7.8 4.5 1.9 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension HTH_30 PF13556.1 gi|14600610|ref|NP_147127.1| - 2.2 7.9 8.6 3 7.4 0.1 3.3 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|14600610|ref|NP_147127.1| - 5.1 6.5 6.3 0.94 8.9 0.3 2.7 3 1 0 3 3 3 0 Winged helix-turn-helix DNA-binding Adeno_terminal PF02459.10 gi|118430983|ref|NP_147129.2| - 0.072 11.2 1.7 0.074 11.2 1.2 1.1 1 0 0 1 1 1 0 Adenoviral DNA terminal protein ABC_tran PF00005.22 gi|118430984|ref|NP_147130.2| - 5.4e-33 114.1 0.0 1.2e-32 113.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|118430984|ref|NP_147130.2| - 1.3e-16 60.6 0.4 2.9e-16 59.5 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|118430984|ref|NP_147130.2| - 1.3e-13 51.6 0.0 3.8e-11 43.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|118430984|ref|NP_147130.2| - 1.2e-06 28.7 0.0 0.013 15.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118430984|ref|NP_147130.2| - 5.1e-06 25.8 0.0 3.1e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|118430984|ref|NP_147130.2| - 1.1e-05 25.0 0.0 0.03 13.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|118430984|ref|NP_147130.2| - 9.5e-05 21.6 0.6 0.0074 15.3 0.0 2.6 3 0 0 3 3 3 1 AAA ATPase domain AAA_24 PF13479.1 gi|118430984|ref|NP_147130.2| - 0.0012 18.4 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|118430984|ref|NP_147130.2| - 0.0021 16.9 0.0 0.0044 15.9 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|118430984|ref|NP_147130.2| - 0.0021 18.8 0.0 0.0052 17.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118430984|ref|NP_147130.2| - 0.0024 18.1 0.2 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|118430984|ref|NP_147130.2| - 0.0048 17.0 0.0 0.28 11.3 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|118430984|ref|NP_147130.2| - 0.006 15.9 0.0 0.15 11.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|118430984|ref|NP_147130.2| - 0.01 15.5 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activat PF00158.21 gi|118430984|ref|NP_147130.2| - 0.015 14.7 0.1 0.37 10.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|118430984|ref|NP_147130.2| - 0.016 14.4 0.1 0.03 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|118430984|ref|NP_147130.2| - 0.02 14.9 0.1 0.053 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|118430984|ref|NP_147130.2| - 0.022 14.4 0.3 0.046 13.3 0.2 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|118430984|ref|NP_147130.2| - 0.023 13.7 0.0 0.045 12.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.1 gi|118430984|ref|NP_147130.2| - 0.027 14.3 0.0 0.19 11.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|118430984|ref|NP_147130.2| - 0.029 14.2 0.0 0.088 12.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|118430984|ref|NP_147130.2| - 0.034 14.4 0.5 0.058 13.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_13 PF13166.1 gi|118430984|ref|NP_147130.2| - 0.037 12.5 0.0 1.5 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|118430984|ref|NP_147130.2| - 0.043 13.4 0.2 0.092 12.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|118430984|ref|NP_147130.2| - 0.051 13.1 0.4 0.095 12.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|118430984|ref|NP_147130.2| - 0.065 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|118430984|ref|NP_147130.2| - 0.27 9.7 5.3 2.3 6.7 0.0 3.0 2 1 1 3 3 3 0 Predicted ATPase of the ABC class KaiC PF06745.8 gi|118430984|ref|NP_147130.2| - 0.32 10.0 6.4 1.2 8.1 0.3 3.1 3 1 0 3 3 3 0 KaiC DUF87 PF01935.12 gi|118430984|ref|NP_147130.2| - 0.56 9.9 6.1 0.68 9.7 1.8 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF87 ABC_tran PF00005.22 gi|118430985|ref|NP_147131.2| - 8.1e-28 97.4 0.0 1.3e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|118430985|ref|NP_147131.2| - 8.1e-21 74.1 0.4 1.8e-20 73.0 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|118430985|ref|NP_147131.2| - 8.1e-13 48.9 0.9 9.1e-09 35.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|118430985|ref|NP_147131.2| - 2.1e-08 34.3 0.2 1.4e-07 31.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|118430985|ref|NP_147131.2| - 2.3e-05 23.7 0.2 5.9e-05 22.4 0.2 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|118430985|ref|NP_147131.2| - 2.7e-05 24.2 0.1 5.8e-05 23.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|118430985|ref|NP_147131.2| - 8.7e-05 22.7 1.5 0.005 17.0 1.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|118430985|ref|NP_147131.2| - 0.00012 21.5 0.0 0.017 14.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|118430985|ref|NP_147131.2| - 0.00027 21.7 0.0 0.00044 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|118430985|ref|NP_147131.2| - 0.00037 19.6 1.1 0.038 13.0 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|118430985|ref|NP_147131.2| - 0.001 17.6 0.5 0.12 10.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|118430985|ref|NP_147131.2| - 0.001 18.5 0.0 0.0017 17.9 0.0 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|118430985|ref|NP_147131.2| - 0.0012 18.5 0.0 0.0028 17.3 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.1 gi|118430985|ref|NP_147131.2| - 0.0014 18.0 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|118430985|ref|NP_147131.2| - 0.0016 18.1 0.0 0.0052 16.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|118430985|ref|NP_147131.2| - 0.0018 17.9 0.0 0.0037 16.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|118430985|ref|NP_147131.2| - 0.0028 16.5 0.1 0.012 14.5 0.0 1.8 2 1 0 2 2 2 1 NB-ARC domain DUF258 PF03193.11 gi|118430985|ref|NP_147131.2| - 0.0036 16.5 0.0 0.0054 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|118430985|ref|NP_147131.2| - 0.0039 16.3 0.2 0.029 13.5 0.0 2.3 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI PRK PF00485.13 gi|118430985|ref|NP_147131.2| - 0.0041 16.6 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_10 PF12846.2 gi|118430985|ref|NP_147131.2| - 0.0042 16.5 0.4 0.08 12.3 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain RNA_helicase PF00910.17 gi|118430985|ref|NP_147131.2| - 0.0047 17.0 0.0 0.014 15.5 0.0 1.8 2 0 0 2 2 1 1 RNA helicase Arch_ATPase PF01637.13 gi|118430985|ref|NP_147131.2| - 0.0057 16.3 0.3 0.06 13.0 0.2 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|118430985|ref|NP_147131.2| - 0.0073 16.6 0.1 0.015 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|118430985|ref|NP_147131.2| - 0.0098 14.6 0.0 0.017 13.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein IstB_IS21 PF01695.12 gi|118430985|ref|NP_147131.2| - 0.016 14.6 0.2 0.23 10.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|118430985|ref|NP_147131.2| - 0.017 15.4 0.0 0.044 14.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|118430985|ref|NP_147131.2| - 0.019 14.8 0.0 0.03 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|118430985|ref|NP_147131.2| - 0.023 13.2 0.3 2.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class CbiA PF01656.18 gi|118430985|ref|NP_147131.2| - 0.034 13.5 2.0 0.12 11.8 1.4 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.12 gi|118430985|ref|NP_147131.2| - 0.047 13.4 0.5 0.11 12.2 0.1 1.8 1 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_19 PF13245.1 gi|118430985|ref|NP_147131.2| - 0.064 13.0 0.4 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain Hpr_kinase_C PF07475.7 gi|118430985|ref|NP_147131.2| - 0.071 12.4 0.6 0.18 11.1 0.1 1.8 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain MMR_HSR1 PF01926.18 gi|118430985|ref|NP_147131.2| - 0.11 12.4 0.8 0.22 11.4 0.6 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase G-alpha PF00503.15 gi|118430985|ref|NP_147131.2| - 0.18 10.4 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.17 gi|118430986|ref|NP_147132.2| - 1.2e-30 106.4 12.2 1.2e-30 106.4 8.5 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|118430986|ref|NP_147132.2| - 1.3e-05 24.4 0.5 1.3e-05 24.4 0.4 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C UPF0126 PF03458.8 gi|118430986|ref|NP_147132.2| - 0.013 15.0 4.1 0.059 12.9 2.8 2.2 1 0 0 1 1 1 0 UPF0126 domain BPD_transp_1 PF00528.17 gi|14600616|ref|NP_147133.1| - 5.3e-37 127.1 8.8 1.3e-36 125.8 3.8 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF2970 PF11174.3 gi|14600616|ref|NP_147133.1| - 9.8 5.8 9.0 0.44 10.1 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) SBP_bac_5 PF00496.17 gi|118430987|ref|NP_147134.2| - 7.9e-92 307.9 4.5 7.9e-92 307.9 3.1 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.15 gi|118430987|ref|NP_147134.2| - 1.6e-41 139.8 5.6 6.8e-23 80.1 1.4 2.5 2 0 0 2 2 2 2 PKD domain FGGY_C PF02782.11 gi|118430988|ref|NP_147135.2| - 7e-24 84.5 0.4 1e-23 83.9 0.3 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.16 gi|118430988|ref|NP_147135.2| - 3.4e-10 39.6 0.0 4.7e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FAD-oxidase_C PF02913.14 gi|118430989|ref|NP_147137.2| - 1.2e-38 132.8 0.0 1.6e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|118430989|ref|NP_147137.2| - 2.6e-31 107.9 0.3 5.6e-31 106.8 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|118430990|ref|NP_147138.2| - 6.3e-37 127.3 1.0 8e-37 126.9 0.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|118430990|ref|NP_147138.2| - 6.9e-06 25.1 0.3 1.3e-05 24.2 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|118430990|ref|NP_147138.2| - 1.7e-05 24.0 0.3 0.006 15.6 0.3 2.1 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|118430990|ref|NP_147138.2| - 4.1e-05 22.6 0.9 0.018 13.9 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|118430990|ref|NP_147138.2| - 5.5e-05 23.1 0.1 0.00011 22.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|118430990|ref|NP_147138.2| - 0.00025 21.3 0.7 0.00059 20.1 0.5 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|118430990|ref|NP_147138.2| - 0.00052 18.6 0.4 0.0011 17.5 0.2 1.5 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|118430990|ref|NP_147138.2| - 0.00088 19.1 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|118430990|ref|NP_147138.2| - 0.003 16.7 0.7 0.0044 16.1 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|118430990|ref|NP_147138.2| - 0.014 14.5 0.2 0.014 14.5 0.2 2.3 3 0 0 3 3 3 0 Thi4 family Pyr_redox_3 PF13738.1 gi|118430990|ref|NP_147138.2| - 0.015 15.3 0.0 0.064 13.3 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|118430990|ref|NP_147138.2| - 0.021 14.5 0.1 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|118430990|ref|NP_147138.2| - 0.027 14.1 0.7 0.064 12.9 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|118430990|ref|NP_147138.2| - 0.039 13.3 0.1 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|118430990|ref|NP_147138.2| - 0.12 11.2 0.5 0.17 10.7 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A HpcH_HpaI PF03328.9 gi|14600622|ref|NP_147139.1| - 1.2e-32 112.6 0.0 1.3e-31 109.2 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|14600622|ref|NP_147139.1| - 1.1e-18 67.1 0.0 2.1e-13 49.8 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold SAP25 PF15476.1 gi|14600622|ref|NP_147139.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Histone deacetylase complex subunit SAP25 UPF0066 PF01980.11 gi|118430991|ref|NP_147140.2| - 2.4e-36 124.3 0.0 3.3e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Peptidase_M55 PF04951.8 gi|118430992|ref|NP_147141.2| - 1.1e-82 277.1 0.0 1.3e-82 276.9 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Dimeth_Pyl PF09505.5 gi|118430992|ref|NP_147141.2| - 0.091 11.0 0.0 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 Dimethylamine methyltransferase (Dimeth_PyL) Arginase PF00491.16 gi|118430993|ref|NP_147142.2| - 1.2e-58 198.6 0.0 1.4e-58 198.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family PGM_PMM_I PF02878.11 gi|118430994|ref|NP_147143.2| - 9.2e-44 148.2 0.0 1.7e-43 147.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|118430994|ref|NP_147143.2| - 4.7e-20 71.8 0.0 2e-19 69.8 0.0 2.1 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|118430994|ref|NP_147143.2| - 1.1e-16 60.8 0.0 1.9e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|118430994|ref|NP_147143.2| - 2.9e-14 52.8 0.5 9.1e-14 51.2 0.2 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tautomerase_2 PF14552.1 gi|118430994|ref|NP_147143.2| - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Tautomerase enzyme DJ-1_PfpI PF01965.19 gi|14600627|ref|NP_147144.1| - 2e-42 144.1 0.0 2.3e-42 143.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|14600627|ref|NP_147144.1| - 1.2e-14 53.9 0.0 1.4e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|14600627|ref|NP_147144.1| - 0.00038 19.9 0.0 0.00047 19.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|14600627|ref|NP_147144.1| - 0.028 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|14600627|ref|NP_147144.1| - 0.051 12.4 0.0 0.095 11.5 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|14600627|ref|NP_147144.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Fer4 PF00037.22 gi|118430995|ref|NP_147145.2| - 8.6e-11 40.9 16.9 2.3e-09 36.4 3.3 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|118430995|ref|NP_147145.2| - 2e-09 37.6 10.0 2.9e-09 37.1 6.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|118430995|ref|NP_147145.2| - 6.6e-09 35.5 9.9 8.7e-09 35.1 6.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|118430995|ref|NP_147145.2| - 3.1e-08 34.2 9.8 1.5e-05 25.6 1.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|118430995|ref|NP_147145.2| - 7e-08 32.0 4.1 7e-08 32.0 2.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|118430995|ref|NP_147145.2| - 7e-08 32.9 10.7 7e-08 32.9 7.4 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|118430995|ref|NP_147145.2| - 1.2e-07 31.8 10.0 2.7e-07 30.7 6.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|118430995|ref|NP_147145.2| - 2.6e-07 30.1 9.5 8.8e-07 28.4 3.0 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|118430995|ref|NP_147145.2| - 2.7e-07 30.2 11.1 2.8e-07 30.2 6.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|118430995|ref|NP_147145.2| - 9.1e-06 25.4 5.0 7.2e-05 22.6 0.5 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|118430995|ref|NP_147145.2| - 1.8e-05 24.9 14.4 0.00039 20.7 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|118430995|ref|NP_147145.2| - 0.00033 20.6 9.8 0.0013 18.6 6.8 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|118430995|ref|NP_147145.2| - 0.00038 20.5 13.1 0.0009 19.3 2.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|118430995|ref|NP_147145.2| - 0.00098 19.4 16.0 0.0024 18.2 9.5 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|118430995|ref|NP_147145.2| - 0.0021 18.3 12.3 0.023 15.0 1.5 2.5 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|118430995|ref|NP_147145.2| - 0.0023 18.3 9.4 0.0025 18.1 0.7 2.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Plant_NMP1 PF06694.6 gi|118430996|ref|NP_147146.2| - 0.0095 14.9 0.1 0.011 14.6 0.1 1.1 1 0 0 1 1 1 1 Plant nuclear matrix protein 1 (NMP1) DUF1664 PF07889.7 gi|118430996|ref|NP_147146.2| - 0.021 14.6 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF3969 PF13108.1 gi|118430996|ref|NP_147146.2| - 0.029 14.0 0.1 0.048 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) HalX PF08663.5 gi|118430996|ref|NP_147146.2| - 0.045 13.7 0.5 0.12 12.3 0.4 1.7 1 0 0 1 1 1 0 HalX domain PqqD PF05402.7 gi|118430996|ref|NP_147146.2| - 0.049 13.6 0.7 1.6 8.8 0.0 2.4 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Helicase_C_2 PF13307.1 gi|118430997|ref|NP_147147.2| - 2.7e-21 76.2 0.0 4.9e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|118430997|ref|NP_147147.2| - 6.1e-19 68.0 0.0 8.8e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|118430997|ref|NP_147147.2| - 0.00016 21.2 0.0 0.0034 16.8 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|118430997|ref|NP_147147.2| - 0.0081 16.0 0.0 0.048 13.4 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit TIP49 PF06068.8 gi|118430998|ref|NP_147150.2| - 9.3e-163 541.5 0.3 1.1e-162 541.3 0.2 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|118430998|ref|NP_147150.2| - 1.3e-10 41.5 0.8 3.3e-08 33.7 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|118430998|ref|NP_147150.2| - 7.8e-09 35.7 2.8 1.4e-05 25.1 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|118430998|ref|NP_147150.2| - 1.3e-08 35.0 0.8 0.0078 16.3 0.0 3.0 3 2 0 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|118430998|ref|NP_147150.2| - 3.9e-07 29.3 2.9 1.3e-05 24.3 0.0 2.9 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|118430998|ref|NP_147150.2| - 1.3e-05 25.9 0.5 6.7e-05 23.7 0.3 2.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|118430998|ref|NP_147150.2| - 1.4e-05 24.7 0.1 4.1e-05 23.2 0.1 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|118430998|ref|NP_147150.2| - 3.7e-05 24.0 0.1 0.00018 21.7 0.0 2.3 3 0 0 3 3 1 1 AAA domain IstB_IS21 PF01695.12 gi|118430998|ref|NP_147150.2| - 0.0003 20.2 0.1 0.00064 19.1 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|118430998|ref|NP_147150.2| - 0.00041 19.8 0.1 0.0012 18.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|118430998|ref|NP_147150.2| - 0.00088 18.4 0.2 0.002 17.2 0.0 1.6 2 0 0 2 2 1 1 Zeta toxin AAA_5 PF07728.9 gi|118430998|ref|NP_147150.2| - 0.0017 18.0 0.1 0.0087 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|118430998|ref|NP_147150.2| - 0.0018 18.1 0.4 0.01 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|118430998|ref|NP_147150.2| - 0.0021 17.5 0.0 0.0071 15.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|118430998|ref|NP_147150.2| - 0.0045 16.1 0.6 0.01 15.0 0.1 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|118430998|ref|NP_147150.2| - 0.005 15.8 0.0 0.019 13.9 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|118430998|ref|NP_147150.2| - 0.0063 16.1 0.0 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.1 gi|118430998|ref|NP_147150.2| - 0.0089 15.9 0.1 0.025 14.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_32 PF13654.1 gi|118430998|ref|NP_147150.2| - 0.016 13.8 1.1 1.7 7.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|118430998|ref|NP_147150.2| - 0.02 14.4 0.0 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|118430998|ref|NP_147150.2| - 0.024 13.7 0.0 0.053 12.6 0.0 1.6 1 0 0 1 1 1 0 KaiC PhoH PF02562.11 gi|118430998|ref|NP_147150.2| - 0.024 13.8 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IPT PF01745.11 gi|118430998|ref|NP_147150.2| - 0.028 13.5 0.0 0.071 12.2 0.0 1.6 1 0 0 1 1 1 0 Isopentenyl transferase ATP-synt_ab PF00006.20 gi|118430998|ref|NP_147150.2| - 0.031 13.7 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.1 gi|118430998|ref|NP_147150.2| - 0.031 13.8 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|118430998|ref|NP_147150.2| - 0.042 13.6 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|118430998|ref|NP_147150.2| - 0.075 12.9 0.0 0.62 9.9 0.0 2.3 3 0 0 3 3 2 0 AAA domain RNA_helicase PF00910.17 gi|118430998|ref|NP_147150.2| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|118430998|ref|NP_147150.2| - 0.13 12.5 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DUF4349 PF14257.1 gi|118430999|ref|NP_147152.2| - 0.013 14.7 1.9 0.083 12.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) DUF1192 PF06698.6 gi|118430999|ref|NP_147152.2| - 0.036 13.8 4.0 12 5.8 0.1 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1192) Pox_A_type_inc PF04508.7 gi|118430999|ref|NP_147152.2| - 0.54 10.1 0.1 0.54 10.1 0.1 3.2 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat Lactamase_B PF00753.22 gi|118431000|ref|NP_147153.2| - 3.4e-25 88.8 3.4 5.7e-25 88.0 2.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|118431000|ref|NP_147153.2| - 1.2e-05 24.9 0.1 2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain dUTPase PF00692.14 gi|118431001|ref|NP_147155.2| - 1e-13 50.8 0.0 1.5e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|118431001|ref|NP_147155.2| - 5.4e-05 21.7 0.0 0.25 9.7 0.0 3.1 2 1 1 3 3 3 3 2'-deoxycytidine 5'-triphosphate deaminase (DCD) LMBR1 PF04791.11 gi|14600639|ref|NP_147156.1| - 0.082 11.4 1.4 0.11 11.1 1.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Penicil_amidase PF01804.13 gi|118431002|ref|NP_147157.2| - 7.4e-129 431.9 0.0 9.5e-129 431.6 0.0 1.0 1 0 0 1 1 1 1 Penicillin amidase Peptidase_M19 PF01244.16 gi|118431003|ref|NP_147158.2| - 2e-69 233.9 0.0 2.2e-69 233.8 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|118431003|ref|NP_147158.2| - 0.00039 20.0 0.1 0.00089 18.9 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase Beta-lactamase PF00144.19 gi|118431004|ref|NP_147159.2| - 4.9e-60 203.2 0.7 7.2e-60 202.7 0.5 1.3 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|118431004|ref|NP_147159.2| - 1.2e-27 95.8 0.0 4.5e-27 93.9 0.0 2.0 2 0 0 2 2 2 1 Pab87 octamerisation domain DUF377 PF04041.8 gi|118431005|ref|NP_147160.2| - 4.6e-100 334.3 0.0 5.3e-100 334.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) GHL6 PF14871.1 gi|118431006|ref|NP_147161.2| - 9.7e-42 142.1 0.0 3.5e-41 140.3 0.0 2.0 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.5 gi|118431006|ref|NP_147161.2| - 0.00012 21.3 0.4 0.00034 19.8 0.1 1.9 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain ThuA PF06283.6 gi|118431006|ref|NP_147161.2| - 0.0014 18.3 0.0 0.0033 17.1 0.0 1.6 1 0 0 1 1 1 1 Trehalose utilisation PHP PF02811.14 gi|118431006|ref|NP_147161.2| - 0.0027 17.5 0.0 0.0087 15.8 0.0 1.8 1 0 0 1 1 1 1 PHP domain DUF4159 PF13709.1 gi|118431006|ref|NP_147161.2| - 0.0063 15.6 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4159) DUF4015 PF13200.1 gi|118431006|ref|NP_147161.2| - 0.024 13.5 0.0 0.038 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain ABC_transp_aux PF09822.4 gi|118431006|ref|NP_147161.2| - 0.051 13.0 0.0 0.081 12.3 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF2431 PF10354.4 gi|118431006|ref|NP_147161.2| - 0.17 11.7 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) 4HBT PF03061.17 gi|118431007|ref|NP_147163.2| - 6e-13 48.7 3.9 2.7e-08 33.8 0.7 2.4 2 0 0 2 2 2 2 Thioesterase superfamily Ribosomal_L18e PF00828.14 gi|14600647|ref|NP_147164.1| - 1.5e-33 115.9 0.6 1.9e-33 115.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|118431008|ref|NP_147166.2| - 4.3e-15 55.0 0.0 7.5e-15 54.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|14600650|ref|NP_147167.1| - 2.3e-25 88.0 2.2 2.3e-25 88.0 1.5 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|14600650|ref|NP_147167.1| - 2.9e-24 84.1 0.0 5.1e-24 83.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|14600651|ref|NP_147168.1| - 2.3e-33 114.8 0.0 4.2e-33 114.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|14600651|ref|NP_147168.1| - 8.9e-15 55.0 0.4 1.5e-14 54.2 0.3 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|14600652|ref|NP_147169.1| - 1.7e-51 173.8 6.9 1.9e-51 173.7 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e MEDS PF14417.1 gi|14600652|ref|NP_147169.1| - 0.043 12.8 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HTH_17 PF12728.2 gi|14600652|ref|NP_147169.1| - 0.18 12.1 4.3 9.9 6.4 0.2 3.4 3 2 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|14600653|ref|NP_147170.1| - 1.1e-34 118.7 0.4 1.5e-34 118.3 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|14600654|ref|NP_147171.1| - 3.6e-33 113.9 6.0 4.6e-17 62.2 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF1108 PF06531.6 gi|14600654|ref|NP_147171.1| - 0.41 10.8 2.1 4.9 7.3 0.1 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF1108) Ribosomal_S8 PF00410.14 gi|118431009|ref|NP_147172.2| - 6.2e-30 103.6 0.0 8e-30 103.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 DUF498 PF04430.9 gi|118431009|ref|NP_147172.2| - 0.092 12.3 0.0 1.3 8.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) Ribosomal_S14 PF00253.16 gi|118431010|ref|YP_874816.1| - 4.7e-17 61.1 5.0 5.2e-17 60.9 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|118431010|ref|YP_874816.1| - 0.0016 18.0 2.8 0.0028 17.2 1.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|118431010|ref|YP_874816.1| - 0.022 14.5 1.3 0.033 14.0 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|118431010|ref|YP_874816.1| - 0.025 14.4 0.2 0.029 14.2 0.2 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn_Tnp_IS91 PF14319.1 gi|118431010|ref|YP_874816.1| - 0.081 12.4 0.3 0.083 12.3 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|118431010|ref|YP_874816.1| - 0.12 12.1 3.3 0.15 11.8 2.3 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|118431010|ref|YP_874816.1| - 0.13 11.7 1.0 0.16 11.4 0.7 1.1 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-CCHC_3 PF13917.1 gi|118431010|ref|YP_874816.1| - 0.23 11.2 0.3 0.23 11.2 0.2 2.1 2 0 0 2 2 2 0 Zinc knuckle UPF0547 PF10571.4 gi|118431010|ref|YP_874816.1| - 0.24 11.1 1.4 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|118431010|ref|YP_874816.1| - 0.67 9.4 4.5 3.1 7.3 0.5 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L5_C PF00673.16 gi|118431011|ref|NP_147174.2| - 9.9e-25 86.1 0.0 1.8e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|118431011|ref|NP_147174.2| - 5.8e-21 74.0 0.5 6.5e-20 70.6 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein L5 V-SNARE_C PF12352.3 gi|118431011|ref|NP_147174.2| - 0.027 14.5 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Snare region anchored in the vesicle membrane C-terminus Ribosomal_S4e PF00900.15 gi|118431012|ref|NP_147175.2| - 2.6e-29 100.6 0.0 4.2e-29 100.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|118431012|ref|NP_147175.2| - 9.2e-17 60.6 4.3 1.7e-16 59.7 3.0 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|118431012|ref|NP_147175.2| - 1e-14 53.7 0.2 6.6e-14 51.0 0.0 2.3 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|118431012|ref|NP_147175.2| - 0.0043 16.7 2.6 0.016 14.9 1.8 2.0 1 0 0 1 1 1 1 KOW motif KOW PF00467.24 gi|14600658|ref|NP_147176.1| - 6.7e-09 35.1 3.2 6.7e-09 35.1 2.2 1.7 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|14600659|ref|NP_147177.1| - 4.6e-39 132.9 0.0 5.6e-39 132.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|14600659|ref|NP_147177.1| - 0.056 13.5 0.1 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.15 gi|118431013|ref|NP_147178.2| - 3.8e-20 71.7 3.5 4.8e-20 71.3 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|14600661|ref|NP_147179.1| - 5.7e-20 70.7 0.0 6.6e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|118431014|ref|YP_874817.1| - 2.3e-21 75.2 1.9 2.6e-21 75.0 1.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF3940 PF13076.1 gi|118431014|ref|YP_874817.1| - 0.0043 16.5 0.1 0.0078 15.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3940) PASTA PF03793.14 gi|118431014|ref|YP_874817.1| - 0.031 13.9 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 PASTA domain DUF1192 PF06698.6 gi|118431014|ref|YP_874817.1| - 0.11 12.3 1.6 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Pox_A_type_inc PF04508.7 gi|118431014|ref|YP_874817.1| - 2.3 8.2 5.1 21 5.2 0.3 2.7 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Ribosomal_S3_C PF00189.15 gi|14600662|ref|NP_147181.1| - 1.4e-19 70.1 0.3 3e-19 68.9 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|14600662|ref|NP_147181.1| - 2.3e-11 43.0 0.2 1.3e-10 40.7 0.0 2.3 3 0 0 3 3 3 1 KH domain KH_1 PF00013.24 gi|14600662|ref|NP_147181.1| - 0.00067 19.2 2.2 0.0041 16.7 0.0 2.8 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|14600662|ref|NP_147181.1| - 0.0034 16.9 0.1 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|14600662|ref|NP_147181.1| - 0.004 16.7 2.0 0.015 14.9 0.0 2.9 3 1 0 3 3 3 1 KH domain Ribosomal_L22 PF00237.14 gi|14600663|ref|NP_147182.1| - 1.6e-35 121.1 0.9 1.9e-35 120.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DinB_2 PF12867.2 gi|14600663|ref|NP_147182.1| - 0.076 13.3 0.3 0.63 10.3 0.0 2.1 2 0 0 2 2 2 0 DinB superfamily Ribosomal_S19 PF00203.16 gi|118431015|ref|NP_147183.2| - 5.2e-28 96.4 0.1 6.9e-28 96.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 FA PF08736.6 gi|118431015|ref|NP_147183.2| - 0.12 12.1 2.5 0.27 11.0 0.1 2.2 2 0 0 2 2 2 0 FERM adjacent (FA) VWA_CoxE PF05762.9 gi|14600666|ref|NP_147185.1| - 4.5e-46 156.7 5.5 9.2e-46 155.7 3.8 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_5 PF07728.9 gi|118431016|ref|NP_147187.2| - 1.7e-19 69.9 0.0 2.8e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|118431016|ref|NP_147187.2| - 1.1e-05 25.7 0.0 1.8e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118431016|ref|NP_147187.2| - 0.00013 22.1 0.1 0.0008 19.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|118431016|ref|NP_147187.2| - 0.00018 21.0 0.0 0.012 15.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|118431016|ref|NP_147187.2| - 0.00078 18.9 0.0 0.72 9.3 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|118431016|ref|NP_147187.2| - 0.0018 18.3 0.0 0.025 14.6 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|118431016|ref|NP_147187.2| - 0.0035 17.0 0.0 0.011 15.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain MCM PF00493.18 gi|118431016|ref|NP_147187.2| - 0.0048 15.7 0.7 0.12 11.1 0.1 2.3 2 1 1 3 3 3 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|118431016|ref|NP_147187.2| - 0.0055 15.8 0.0 0.47 9.5 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|118431016|ref|NP_147187.2| - 0.013 15.4 0.0 0.023 14.6 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|118431016|ref|NP_147187.2| - 0.018 14.6 0.0 0.047 13.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|118431016|ref|NP_147187.2| - 0.021 15.6 0.9 0.073 13.9 0.6 2.2 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|118431016|ref|NP_147187.2| - 0.022 13.4 0.0 0.06 12.0 0.0 1.6 2 0 0 2 2 2 0 TIP49 C-terminus AAA_2 PF07724.9 gi|118431016|ref|NP_147187.2| - 0.033 14.1 0.0 0.098 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|118431016|ref|NP_147187.2| - 0.047 13.8 0.0 0.56 10.3 0.0 2.3 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|118431016|ref|NP_147187.2| - 0.12 11.8 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase_2 PF13335.1 gi|118431016|ref|NP_147187.2| - 0.12 12.7 0.8 0.33 11.3 0.6 1.9 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|118431016|ref|NP_147187.2| - 0.14 11.7 0.0 0.25 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain PDDEXK_1 PF12705.2 gi|14600669|ref|NP_147188.1| - 3.3e-19 69.2 0.0 1.6e-12 47.3 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|14600669|ref|NP_147188.1| - 3.2e-06 27.1 0.0 4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 tRNA-synt_1 PF00133.17 gi|14600670|ref|NP_147189.1| - 3.3e-182 606.6 0.0 4.6e-182 606.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|14600670|ref|NP_147189.1| - 7.9e-30 103.6 1.2 1.6e-29 102.6 0.8 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|14600670|ref|NP_147189.1| - 1.6e-25 89.5 0.4 1.2e-08 34.1 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|14600670|ref|NP_147189.1| - 0.00019 20.6 0.0 0.097 11.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-ribbon_3 PF13248.1 gi|14600670|ref|NP_147189.1| - 0.0099 15.0 0.2 0.12 11.6 0.0 2.6 2 1 0 2 2 2 1 zinc-ribbon domain tRNA-synt_1f PF01921.13 gi|14600670|ref|NP_147189.1| - 0.01 14.5 0.0 0.034 12.8 0.0 1.8 3 0 0 3 3 3 0 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|14600670|ref|NP_147189.1| - 0.065 12.5 0.0 0.26 10.5 0.0 1.9 2 0 0 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 Zn-ribbon_8 PF09723.5 gi|14600670|ref|NP_147189.1| - 0.16 11.9 3.3 0.48 10.4 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|14600670|ref|NP_147189.1| - 0.22 10.7 3.8 15 4.8 0.1 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|14600670|ref|NP_147189.1| - 0.68 9.9 4.3 1.5 8.8 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Mu-like_Com PF10122.4 gi|14600670|ref|NP_147189.1| - 4.8 6.3 6.5 2.4 7.2 0.0 3.0 3 0 0 3 3 3 0 Mu-like prophage protein Com ACT PF01842.20 gi|14602188|ref|NP_147191.1| - 1e-08 34.4 0.1 2.1e-08 33.4 0.1 1.6 1 0 0 1 1 1 1 ACT domain Antitoxin-MazE PF04014.13 gi|14602188|ref|NP_147191.1| - 3.3e-06 26.6 0.4 5.5e-06 25.9 0.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|14602188|ref|NP_147191.1| - 2.4e-05 23.9 0.0 4.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MraZ protein ACT_6 PF13740.1 gi|14602188|ref|NP_147191.1| - 4.9e-05 22.9 0.0 9.4e-05 22.0 0.0 1.6 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|14602188|ref|NP_147191.1| - 0.005 17.1 0.0 0.0091 16.3 0.0 1.4 1 0 0 1 1 1 1 ACT domain CDC48_N PF02359.13 gi|14602188|ref|NP_147191.1| - 0.052 13.5 0.2 0.59 10.1 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain ACT_7 PF13840.1 gi|14602188|ref|NP_147191.1| - 0.072 12.6 0.2 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 ACT domain Lactamase_B PF00753.22 gi|14600672|ref|NP_147192.1| - 3.1e-16 59.5 0.1 3.9e-16 59.2 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CBS PF00571.23 gi|118431018|ref|NP_147193.2| - 1.7e-35 120.5 2.7 2.9e-17 62.1 0.3 2.1 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.11 gi|118431018|ref|NP_147193.2| - 0.046 12.8 0.1 0.15 11.1 0.1 1.7 2 0 0 2 2 2 0 DisA bacterial checkpoint controller nucleotide-binding Acyl-CoA_dh_1 PF00441.19 gi|118431019|ref|NP_147195.2| - 9.4e-39 132.9 1.7 1.8e-38 132.0 1.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|118431019|ref|NP_147195.2| - 7.6e-14 50.9 0.5 1.6e-13 49.9 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|118431019|ref|NP_147195.2| - 1.7e-09 38.0 2.4 6.7e-09 36.1 0.2 2.4 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain DUF4142 PF13628.1 gi|118431019|ref|NP_147195.2| - 0.018 15.0 0.2 0.039 13.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) Acetyltransf_1 PF00583.19 gi|14600676|ref|NP_147196.1| - 2.8e-12 46.4 0.4 4.9e-12 45.7 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|14600676|ref|NP_147196.1| - 3.3e-11 43.3 0.0 4e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|14600676|ref|NP_147196.1| - 8.5e-10 38.6 0.1 1.3e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|14600676|ref|NP_147196.1| - 3.5e-08 33.5 0.1 4.1e-08 33.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|14600676|ref|NP_147196.1| - 2.5e-07 30.3 0.1 3.9e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|14600676|ref|NP_147196.1| - 5.3e-07 29.5 0.1 7e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|14600676|ref|NP_147196.1| - 0.00092 19.0 0.1 0.0016 18.2 0.1 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|14600676|ref|NP_147196.1| - 0.047 13.2 0.2 0.072 12.6 0.1 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|14600677|ref|NP_147197.1| - 5.1e-15 55.2 0.8 8.9e-15 54.5 0.5 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|14600677|ref|NP_147197.1| - 3.2e-10 40.0 0.1 5.1e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|14600677|ref|NP_147197.1| - 4.5e-09 36.4 0.1 5.8e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|14600677|ref|NP_147197.1| - 7.9e-08 31.9 0.3 3e-07 30.0 0.0 1.8 1 1 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|14600677|ref|NP_147197.1| - 8.3e-06 25.6 0.0 8.8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|14600677|ref|NP_147197.1| - 4.4e-05 23.4 0.0 5.2e-05 23.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|14600677|ref|NP_147197.1| - 0.00016 21.8 0.0 0.00019 21.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|14600677|ref|NP_147197.1| - 0.00019 21.3 0.0 0.00025 20.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|14600677|ref|NP_147197.1| - 0.014 14.9 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|14600677|ref|NP_147197.1| - 0.023 14.5 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Malic_M PF03949.10 gi|14600678|ref|NP_147198.1| - 9.5e-69 231.7 0.0 1.2e-68 231.4 0.0 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|14600678|ref|NP_147198.1| - 4.9e-20 71.8 0.0 2.1e-14 53.5 0.0 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain AMP-binding PF00501.23 gi|118431020|ref|NP_147199.2| - 5.8e-92 308.2 0.1 7.2e-92 307.9 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|118431020|ref|NP_147199.2| - 2.2e-18 66.9 0.1 1.8e-17 64.0 0.0 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain FeoA PF04023.9 gi|118431021|ref|NP_147200.2| - 0.056 13.4 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 FeoA domain AA_kinase PF00696.23 gi|118431022|ref|NP_147201.2| - 5.9e-24 84.9 0.0 7.4e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family MnhB PF04039.8 gi|118431023|ref|YP_874819.1| - 0.03 14.3 4.4 0.032 14.2 3.0 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter DUF3529 PF12046.3 gi|118431023|ref|YP_874819.1| - 0.6 9.1 2.5 0.51 9.3 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3529) DUF2721 PF11026.3 gi|118431023|ref|YP_874819.1| - 1.4 8.5 6.6 5 6.7 4.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) Claudin_2 PF13903.1 gi|118431023|ref|YP_874819.1| - 4.3 6.9 9.1 0.3 10.7 1.4 2.0 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction ATP-synt_D PF01813.12 gi|118431024|ref|NP_147203.2| - 1e-46 158.9 4.8 1.2e-46 158.8 3.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D CorA PF01544.13 gi|118431024|ref|NP_147203.2| - 0.19 10.7 5.9 0.69 8.8 0.8 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein ATP-synt_ab PF00006.20 gi|118431025|ref|NP_147204.2| - 3e-62 209.9 0.0 4e-62 209.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|118431025|ref|NP_147204.2| - 1.3e-17 64.2 0.2 2.5e-17 63.3 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|118431025|ref|NP_147204.2| - 4.4e-11 42.8 4.3 1.1e-10 41.5 3.0 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain CCDC66 PF15236.1 gi|118431025|ref|NP_147204.2| - 0.014 15.0 0.8 0.037 13.6 0.6 1.6 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 66 HAS-barrel PF09378.5 gi|118431025|ref|NP_147204.2| - 0.036 13.9 1.3 0.098 12.5 0.9 1.8 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.20 gi|118431026|ref|NP_147205.2| - 5.1e-95 317.0 0.0 7e-95 316.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|118431026|ref|NP_147205.2| - 1.6e-19 70.4 1.6 3e-19 69.5 1.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|118431026|ref|NP_147205.2| - 2.5e-14 53.2 1.0 6.7e-14 51.8 0.7 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_19 PF13245.1 gi|118431026|ref|NP_147205.2| - 0.01 15.5 0.1 0.39 10.5 0.0 2.9 3 0 0 3 3 3 0 Part of AAA domain AAA_22 PF13401.1 gi|118431026|ref|NP_147205.2| - 0.076 13.1 0.0 0.37 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain vATP-synt_E PF01991.13 gi|118431027|ref|NP_147206.2| - 1.7e-11 43.7 6.6 3.2e-11 42.8 4.6 1.4 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit AAA_32 PF13654.1 gi|118431027|ref|NP_147206.2| - 0.0066 15.1 1.1 0.0087 14.7 0.8 1.1 1 0 0 1 1 1 1 AAA domain Pex19 PF04614.7 gi|118431027|ref|NP_147206.2| - 0.061 12.9 0.1 0.091 12.3 0.1 1.3 1 0 0 1 1 1 0 Pex19 protein family ATP-synt_B PF00430.13 gi|118431027|ref|NP_147206.2| - 0.1 12.3 9.1 0.24 11.2 6.1 1.6 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF883 PF05957.8 gi|118431027|ref|NP_147206.2| - 0.12 12.7 8.4 0.24 11.7 4.8 2.1 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Caudo_TAP PF02413.12 gi|118431027|ref|NP_147206.2| - 0.48 10.6 2.7 0.39 10.8 1.1 1.5 2 0 0 2 2 2 0 Caudovirales tail fibre assembly protein Sds3 PF08598.6 gi|118431027|ref|NP_147206.2| - 0.55 9.7 4.9 0.47 9.9 2.1 1.5 1 1 0 1 1 1 0 Sds3-like GvpL_GvpF PF06386.6 gi|118431027|ref|NP_147206.2| - 0.66 9.5 7.9 0.9 9.0 5.2 1.5 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF YtxH PF12732.2 gi|118431027|ref|NP_147206.2| - 9.2 6.7 6.6 37 4.7 1.7 2.6 2 1 0 2 2 2 0 YtxH-like protein ATP-synt_F PF01990.12 gi|118431028|ref|NP_147207.2| - 5.4e-07 29.9 0.3 6e-07 29.7 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Pyridoxal_deC PF00282.14 gi|14600688|ref|NP_147208.1| - 1.5e-16 59.8 0.0 3.4e-16 58.6 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|14600688|ref|NP_147208.1| - 8.3e-06 24.7 0.0 1.2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|14600688|ref|NP_147208.1| - 0.019 14.1 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|14600688|ref|NP_147208.1| - 0.13 10.7 0.0 0.33 9.4 0.0 1.5 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain SNF2_N PF00176.18 gi|14600689|ref|NP_147209.1| - 1.1e-18 67.0 0.1 2.4e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3883 PF13020.1 gi|14600689|ref|NP_147209.1| - 4.8e-18 64.6 1.0 1.2e-17 63.4 0.7 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Helicase_C PF00271.26 gi|14600689|ref|NP_147209.1| - 1.9e-13 50.0 0.0 4.4e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|14600689|ref|NP_147209.1| - 2.3e-09 37.3 0.0 6.1e-09 35.9 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|14600689|ref|NP_147209.1| - 9.7e-07 28.4 0.0 3e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|14600689|ref|NP_147209.1| - 0.0051 15.8 0.0 0.019 13.9 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) DUF460 PF04312.8 gi|14600689|ref|NP_147209.1| - 0.097 12.1 0.1 12 5.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF460) DUF499 PF04465.7 gi|14600691|ref|NP_147211.1| - 0 1275.7 20.7 0 1269.0 14.4 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.7 gi|118431030|ref|NP_147212.2| - 1.4e-19 69.6 0.0 3.4e-19 68.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|118431030|ref|NP_147212.2| - 2.8e-09 37.0 0.0 0.00018 21.5 0.0 2.7 2 0 0 2 2 2 2 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|118431030|ref|NP_147212.2| - 1.1e-07 31.4 0.0 0.0016 17.8 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|118431030|ref|NP_147212.2| - 0.00042 19.9 0.0 0.96 8.9 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MBD PF01429.14 gi|118431030|ref|NP_147212.2| - 0.061 12.8 0.1 1.1 8.8 0.0 2.6 2 0 0 2 2 2 0 Methyl-CpG binding domain RHH_1 PF01402.16 gi|118431032|ref|NP_147214.2| - 2.8e-11 42.8 0.4 3.4e-11 42.5 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RepB-RCR_reg PF10723.4 gi|118431032|ref|NP_147214.2| - 0.006 16.2 0.2 0.0066 16.1 0.1 1.1 1 0 0 1 1 1 1 Replication regulatory protein RepB RHH_3 PF12651.2 gi|118431032|ref|NP_147214.2| - 0.0064 16.2 0.3 0.0088 15.7 0.2 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix domain Methyltransf_31 PF13847.1 gi|118431032|ref|NP_147214.2| - 0.018 14.6 0.1 0.018 14.6 0.0 1.0 1 0 0 1 1 1 0 Methyltransferase domain DUF1778 PF08681.6 gi|118431032|ref|NP_147214.2| - 0.038 13.8 0.1 0.043 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) DUF2296 PF10058.4 gi|118431033|ref|YP_874821.1| - 7.8e-05 22.3 0.7 7.8e-05 22.3 0.5 1.8 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|118431033|ref|YP_874821.1| - 0.001 18.8 3.9 0.035 13.9 1.7 2.2 1 1 1 2 2 2 2 Double zinc ribbon zf-BED PF02892.10 gi|118431033|ref|YP_874821.1| - 0.0012 18.5 0.1 0.35 10.6 0.0 2.4 2 0 0 2 2 2 1 BED zinc finger Desulfoferrod_N PF06397.7 gi|118431033|ref|YP_874821.1| - 0.0016 17.8 1.7 0.31 10.4 0.0 2.9 3 0 0 3 3 3 1 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|118431033|ref|YP_874821.1| - 0.014 15.6 3.8 5.7 7.4 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-AN1 PF01428.11 gi|118431033|ref|YP_874821.1| - 0.017 15.0 2.1 6.1 6.8 0.2 3.0 3 0 0 3 3 3 0 AN1-like Zinc finger Elf1 PF05129.8 gi|118431033|ref|YP_874821.1| - 0.017 14.8 3.5 4.6 7.0 0.1 3.0 1 1 1 3 3 3 0 Transcription elongation factor Elf1 like zf-Sec23_Sec24 PF04810.10 gi|118431033|ref|YP_874821.1| - 0.017 14.6 12.5 0.091 12.3 2.5 2.7 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.5 gi|118431033|ref|YP_874821.1| - 0.027 14.4 6.9 0.11 12.5 3.1 2.4 2 1 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|118431033|ref|YP_874821.1| - 0.038 13.6 1.5 0.91 9.2 1.0 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|118431033|ref|YP_874821.1| - 0.043 13.7 4.3 3.5 7.6 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|118431033|ref|YP_874821.1| - 0.055 12.7 7.2 0.2 11.0 2.4 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|118431033|ref|YP_874821.1| - 0.058 13.2 6.2 3.8 7.4 2.0 2.9 2 1 0 2 2 2 0 Rubredoxin zf-ISL3 PF14690.1 gi|118431033|ref|YP_874821.1| - 0.07 13.1 6.2 6.1 6.9 0.0 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Di19 PF05605.7 gi|118431033|ref|YP_874821.1| - 0.073 13.2 4.0 1.1 9.4 0.1 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Ribosomal_S27e PF01667.12 gi|118431033|ref|YP_874821.1| - 0.1 12.1 5.8 1.2 8.7 0.2 2.8 2 1 1 3 3 3 0 Ribosomal protein S27 DUF678 PF05077.7 gi|118431033|ref|YP_874821.1| - 0.13 12.2 0.6 2.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Zn_ribbon_recom PF13408.1 gi|118431033|ref|YP_874821.1| - 0.13 12.5 4.4 3.7 7.8 1.8 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|118431033|ref|YP_874821.1| - 0.15 11.6 6.5 0.93 9.0 0.0 3.2 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|118431033|ref|YP_874821.1| - 0.16 12.4 6.3 7.3 7.1 0.1 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger zf-HIT PF04438.11 gi|118431033|ref|YP_874821.1| - 0.16 11.6 14.0 4 7.1 1.2 3.2 2 1 1 3 3 3 0 HIT zinc finger DUF983 PF06170.7 gi|118431033|ref|YP_874821.1| - 0.16 12.0 1.3 18 5.5 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF983) zf-CHY PF05495.7 gi|118431033|ref|YP_874821.1| - 0.19 11.9 2.0 3.1 8.0 1.4 2.2 1 1 0 1 1 1 0 CHY zinc finger FYVE PF01363.16 gi|118431033|ref|YP_874821.1| - 0.2 11.5 3.4 5.6 6.9 0.5 2.2 2 0 0 2 2 2 0 FYVE zinc finger zf-ribbon_3 PF13248.1 gi|118431033|ref|YP_874821.1| - 0.22 10.7 8.8 0.8 8.9 0.1 3.3 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|118431033|ref|YP_874821.1| - 0.22 11.8 9.0 0.32 11.3 0.1 3.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar SprT-like PF10263.4 gi|118431033|ref|YP_874821.1| - 0.24 11.0 2.3 0.46 10.1 1.6 1.6 1 1 0 1 1 1 0 SprT-like family zf-B_box PF00643.19 gi|118431033|ref|YP_874821.1| - 0.26 11.2 2.7 3.7 7.5 1.1 2.6 2 1 0 2 2 2 0 B-box zinc finger zf-C2HC5 PF06221.8 gi|118431033|ref|YP_874821.1| - 0.26 11.0 2.3 0.65 9.7 0.7 2.1 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type C1_4 PF07975.7 gi|118431033|ref|YP_874821.1| - 0.33 10.9 5.1 86 3.2 4.1 2.8 1 1 1 2 2 2 0 TFIIH C1-like domain Zn_Tnp_IS1 PF03811.8 gi|118431033|ref|YP_874821.1| - 0.36 10.3 11.7 6 6.4 0.3 3.3 2 1 1 3 3 3 0 InsA N-terminal domain DUF35_N PF12172.3 gi|118431033|ref|YP_874821.1| - 0.39 10.7 6.2 13 5.8 0.0 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.11 gi|118431033|ref|YP_874821.1| - 0.4 10.4 0.2 0.4 10.4 0.2 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-LITAF-like PF10601.4 gi|118431033|ref|YP_874821.1| - 0.59 10.0 3.6 15 5.5 1.3 2.8 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain DUF1272 PF06906.6 gi|118431033|ref|YP_874821.1| - 0.62 9.9 5.5 9.8 6.1 3.8 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-RING_5 PF14634.1 gi|118431033|ref|YP_874821.1| - 0.63 9.8 5.4 7.1 6.4 2.4 2.8 2 1 0 2 2 2 0 zinc-RING finger domain DUF329 PF03884.9 gi|118431033|ref|YP_874821.1| - 0.66 9.5 3.2 23 4.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF329) UPF0515 PF15135.1 gi|118431033|ref|YP_874821.1| - 0.74 8.8 2.9 0.86 8.6 2.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Zn_Tnp_IS1595 PF12760.2 gi|118431033|ref|YP_874821.1| - 0.75 9.6 11.2 3.5 7.5 0.2 2.9 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431033|ref|YP_874821.1| - 0.87 9.2 11.8 0.23 11.1 2.3 3.1 3 1 0 3 3 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|118431033|ref|YP_874821.1| - 1 9.1 8.1 9.5 6.0 0.1 3.1 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|118431033|ref|YP_874821.1| - 1 9.0 7.9 9.7 5.8 0.1 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|118431033|ref|YP_874821.1| - 1 8.4 9.0 3.7 6.6 0.0 2.9 2 1 0 2 2 2 0 Mu-like prophage protein Com zf-C3HC4_3 PF13920.1 gi|118431033|ref|YP_874821.1| - 1.5 8.5 8.1 35 4.1 5.6 2.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|118431033|ref|YP_874821.1| - 1.7 8.4 9.6 5.8 6.6 0.2 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|118431033|ref|YP_874821.1| - 1.9 8.7 0.1 1.9 8.7 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) DNA_RNApol_7kD PF03604.8 gi|118431033|ref|YP_874821.1| - 2.4 7.6 8.8 7 6.2 0.2 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_3 PF14369.1 gi|118431033|ref|YP_874821.1| - 4.9 7.2 7.8 14 5.8 0.7 2.6 2 2 0 2 2 2 0 zinc-finger zf-C2H2 PF00096.21 gi|118431033|ref|YP_874821.1| - 5.5 7.5 6.3 27 5.3 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-HYPF PF07503.7 gi|118431033|ref|YP_874821.1| - 8.2 5.9 8.1 5.5 6.5 0.7 3.0 3 0 0 3 3 3 0 HypF finger ATP_bind_4 PF01902.12 gi|14600696|ref|NP_147216.1| - 1.3e-49 168.5 0.0 1.6e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|14600696|ref|NP_147216.1| - 0.0011 18.4 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Usp PF00582.21 gi|14600696|ref|NP_147216.1| - 0.023 14.8 0.2 0.043 14.0 0.1 1.5 1 1 0 1 1 1 0 Universal stress protein family QueC PF06508.8 gi|14600696|ref|NP_147216.1| - 0.037 13.2 0.0 0.057 12.6 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC TatD_DNase PF01026.16 gi|118431035|ref|NP_147217.2| - 1e-45 155.9 0.0 1.2e-45 155.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Glycos_transf_2 PF00535.21 gi|118431038|ref|NP_147219.2| - 1.2e-28 99.9 0.0 1.8e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|118431038|ref|NP_147219.2| - 1.9e-20 72.9 6.4 3.4e-20 72.1 4.4 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|118431038|ref|NP_147219.2| - 6.5e-12 45.7 0.0 1.2e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|118431038|ref|NP_147219.2| - 0.058 12.6 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|118431038|ref|NP_147219.2| - 0.17 10.9 0.0 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 UDG PF03167.14 gi|118431039|ref|NP_147220.2| - 8.9e-40 135.6 0.0 1.2e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MIT PF04212.13 gi|118431040|ref|NP_147221.2| - 0.0025 17.6 0.1 0.015 15.1 0.1 2.2 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain Lon_C PF05362.8 gi|118431040|ref|NP_147221.2| - 0.0047 16.2 0.2 0.023 14.0 0.2 1.9 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain TPR_7 PF13176.1 gi|118431040|ref|NP_147221.2| - 0.042 13.6 0.1 9.1 6.3 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|118431040|ref|NP_147221.2| - 0.24 12.1 8.8 9.7 7.1 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat IstB_IS21 PF01695.12 gi|14600703|ref|NP_147223.1| - 6.6e-05 22.4 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|14600703|ref|NP_147223.1| - 0.00012 21.5 0.0 0.016 14.6 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|14600703|ref|NP_147223.1| - 0.0016 18.0 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|14600703|ref|NP_147223.1| - 0.0042 17.2 0.0 0.007 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|14600703|ref|NP_147223.1| - 0.0046 17.0 0.0 0.007 16.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|14600703|ref|NP_147223.1| - 0.031 14.4 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|14600703|ref|NP_147223.1| - 0.033 14.1 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Nup35_RRM_2 PF14605.1 gi|14600703|ref|NP_147223.1| - 0.034 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif Mg_chelatase PF01078.16 gi|14600703|ref|NP_147223.1| - 0.055 12.6 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.10 gi|14600703|ref|NP_147223.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.4 1 1 0 1 1 1 0 NTPase AAA PF00004.24 gi|14600703|ref|NP_147223.1| - 0.083 13.0 0.0 0.12 12.6 0.0 1.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|14600703|ref|NP_147223.1| - 0.094 12.4 0.0 0.41 10.4 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_5 PF07728.9 gi|14600703|ref|NP_147223.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|14600703|ref|NP_147223.1| - 0.16 11.4 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|14600703|ref|NP_147223.1| - 0.16 11.4 0.0 0.38 10.1 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain DUF46 PF01864.12 gi|14600705|ref|NP_147225.1| - 2.3e-43 148.0 1.8 5.6e-43 146.8 1.3 1.5 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|14600705|ref|NP_147225.1| - 3.8e-06 26.7 1.9 3.8e-06 26.7 1.3 1.8 1 1 1 2 2 2 1 Cytidylyltransferase family Nop10p PF04135.7 gi|118431042|ref|YP_874824.1| - 2.5e-25 87.9 0.7 2.7e-25 87.8 0.5 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-CCHC_4 PF14392.1 gi|118431042|ref|YP_874824.1| - 0.015 14.9 1.0 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 Zinc knuckle RecR PF02132.10 gi|118431042|ref|YP_874824.1| - 0.016 14.6 0.3 0.024 14.0 0.2 1.2 1 0 0 1 1 1 0 RecR protein Ribosomal_L37e PF01907.14 gi|118431042|ref|YP_874824.1| - 0.018 14.8 1.5 0.018 14.8 1.0 1.4 2 0 0 2 2 2 0 Ribosomal protein L37e zf-FPG_IleRS PF06827.9 gi|118431042|ref|YP_874824.1| - 0.034 13.7 7.3 0.31 10.7 1.4 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.3 gi|118431042|ref|YP_874824.1| - 0.046 13.6 7.5 0.046 13.6 5.2 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|118431042|ref|YP_874824.1| - 0.048 13.3 1.5 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.2 gi|118431042|ref|YP_874824.1| - 0.064 13.0 0.4 0.089 12.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|118431042|ref|YP_874824.1| - 0.14 11.8 1.5 0.19 11.4 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF1272 PF06906.6 gi|118431042|ref|YP_874824.1| - 0.23 11.3 2.0 0.28 11.0 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|118431042|ref|YP_874824.1| - 0.55 9.5 4.6 7.3 5.9 2.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|118431042|ref|YP_874824.1| - 1.1 9.3 6.5 3.4 7.7 0.6 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|118431042|ref|YP_874824.1| - 1.8 7.9 4.1 49 3.3 2.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|118431042|ref|YP_874824.1| - 1.9 8.6 5.5 0.58 10.2 0.5 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Zn-ribbon_8 PF09723.5 gi|118431042|ref|YP_874824.1| - 2.5 8.1 5.9 1.3e+02 2.5 4.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain EIF_2_alpha PF07541.7 gi|118431043|ref|NP_147227.2| - 3.2e-27 94.5 0.1 6.6e-27 93.4 0.1 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|118431043|ref|NP_147227.2| - 2.8e-15 56.1 0.3 5.5e-15 55.2 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S10 PF00338.17 gi|118431043|ref|NP_147227.2| - 0.018 14.8 0.8 0.27 11.0 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S10p/S20e Lsr2 PF11774.3 gi|118431043|ref|NP_147227.2| - 0.036 14.0 1.5 0.037 13.9 0.0 1.8 2 0 0 2 2 2 0 Lsr2 DUF2870 PF11069.3 gi|118431043|ref|NP_147227.2| - 0.071 13.1 0.9 0.16 12.0 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) HTH_15 PF12324.3 gi|118431043|ref|NP_147227.2| - 0.17 11.5 0.7 3.9 7.2 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase Ribosomal_S27e PF01667.12 gi|14600707|ref|NP_147228.1| - 7.5e-21 73.4 0.3 8.2e-21 73.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|14600707|ref|NP_147228.1| - 1.6e-05 23.9 0.9 0.026 13.7 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|14600707|ref|NP_147228.1| - 1.8e-05 23.9 1.4 2.4e-05 23.5 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|14600707|ref|NP_147228.1| - 0.0013 19.0 0.2 0.0018 18.5 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|14600707|ref|NP_147228.1| - 0.0015 18.1 3.0 0.075 12.6 2.1 2.1 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|14600707|ref|NP_147228.1| - 0.0041 16.8 0.9 0.0065 16.2 0.6 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|14600707|ref|NP_147228.1| - 0.0042 16.6 0.9 0.82 9.3 0.1 2.5 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|14600707|ref|NP_147228.1| - 0.0058 16.0 4.0 0.014 14.8 2.8 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.3 gi|14600707|ref|NP_147228.1| - 0.009 15.8 1.0 3.7 7.5 0.1 2.4 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|14600707|ref|NP_147228.1| - 0.019 14.6 0.1 0.026 14.1 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PADR1 PF08063.7 gi|14600707|ref|NP_147228.1| - 0.038 13.3 1.3 0.054 12.8 0.2 1.7 1 1 1 2 2 2 0 PADR1 (NUC008) domain zinc_ribbon_4 PF13717.1 gi|14600707|ref|NP_147228.1| - 0.049 13.3 3.8 1.5 8.5 0.4 2.5 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|14600707|ref|NP_147228.1| - 0.055 13.1 1.3 0.078 12.6 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|14600707|ref|NP_147228.1| - 0.07 12.9 1.2 0.14 11.9 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|14600707|ref|NP_147228.1| - 0.088 12.3 0.2 0.11 12.0 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.5 gi|14600707|ref|NP_147228.1| - 0.091 12.7 2.4 1.3 9.0 0.2 2.1 1 1 0 2 2 2 0 Zinc ribbon domain CpXC PF14353.1 gi|14600707|ref|NP_147228.1| - 0.12 12.3 1.8 3.8 7.5 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF3797 PF12677.2 gi|14600707|ref|NP_147228.1| - 0.19 11.3 3.7 1.9 8.1 2.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DNA_ligase_ZBD PF03119.11 gi|14600707|ref|NP_147228.1| - 0.24 11.1 3.7 4.7 6.9 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Sgf11 PF08209.6 gi|14600707|ref|NP_147228.1| - 0.24 10.7 1.8 4.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C4_Topoisom PF01396.14 gi|14600707|ref|NP_147228.1| - 0.27 10.7 3.1 0.33 10.4 0.3 2.0 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-RING_3 PF14369.1 gi|14600707|ref|NP_147228.1| - 0.3 11.1 1.5 1.2 9.2 0.1 2.0 1 1 1 2 2 2 0 zinc-finger zf-CCHC PF00098.18 gi|14600707|ref|NP_147228.1| - 0.47 10.4 3.6 12 6.0 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle RNA_POL_M_15KD PF02150.11 gi|14600707|ref|NP_147228.1| - 0.75 9.5 2.8 12 5.6 0.8 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|14600707|ref|NP_147228.1| - 2.2 8.3 8.4 0.35 10.9 2.0 2.3 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L44 PF00935.14 gi|118431044|ref|NP_147229.2| - 3.8e-28 97.2 6.2 5.8e-28 96.7 4.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|118431044|ref|NP_147229.2| - 0.033 14.4 0.8 0.033 14.4 0.6 2.7 2 1 1 3 3 3 0 Ribosomal protein L33 DUF3395 PF11875.3 gi|118431044|ref|NP_147229.2| - 0.057 13.0 0.2 0.063 12.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3395) zinc_ribbon_2 PF13240.1 gi|118431044|ref|NP_147229.2| - 0.29 10.6 1.8 12 5.5 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|118431044|ref|NP_147229.2| - 0.52 9.9 3.5 6.6 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|118431044|ref|NP_147229.2| - 0.63 9.7 3.7 9 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.11 gi|118431044|ref|NP_147229.2| - 1.4 8.8 5.7 3.9 7.4 3.9 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Tnp_zf-ribbon_2 PF13842.1 gi|118431044|ref|NP_147229.2| - 3.3 8.2 6.7 5.8 7.4 0.5 2.5 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-HIT PF04438.11 gi|118431044|ref|NP_147229.2| - 4.3 7.0 6.4 11 5.7 1.2 2.3 2 0 0 2 2 2 0 HIT zinc finger DNA_primase_S PF01896.14 gi|118431046|ref|NP_147231.2| - 9.1e-22 77.4 0.0 1.5e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit PCNA_N PF00705.13 gi|118431047|ref|NP_147232.2| - 2e-12 46.6 0.0 3.8e-11 42.6 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|118431047|ref|NP_147232.2| - 6.1e-06 26.1 0.0 1.2e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|118431047|ref|NP_147232.2| - 0.0012 18.0 0.0 0.0021 17.2 0.0 1.4 1 1 0 1 1 1 1 Rad9 TFIIS_C PF01096.13 gi|118431049|ref|NP_147234.2| - 8.2e-22 76.5 14.6 2.3e-21 75.0 4.5 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|118431049|ref|NP_147234.2| - 1.7e-09 37.2 0.5 1.7e-09 37.2 0.4 2.9 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|118431049|ref|NP_147234.2| - 1.1e-08 34.6 10.1 6.8e-06 25.8 1.1 2.5 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|118431049|ref|NP_147234.2| - 7.8e-08 31.5 3.9 0.002 17.4 0.1 2.7 2 1 0 2 2 2 2 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|118431049|ref|NP_147234.2| - 4e-06 26.3 7.5 0.0072 15.9 0.5 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain IBR PF01485.16 gi|118431049|ref|NP_147234.2| - 2e-05 24.3 3.3 0.025 14.4 0.2 3.0 3 0 0 3 3 3 1 IBR domain DUF2387 PF09526.5 gi|118431049|ref|NP_147234.2| - 2.1e-05 24.3 2.9 0.0058 16.5 0.1 2.3 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|118431049|ref|NP_147234.2| - 2.9e-05 23.3 11.9 0.0058 16.0 0.1 3.8 4 0 0 4 4 4 2 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|118431049|ref|NP_147234.2| - 7.4e-05 22.9 6.1 0.046 14.0 0.2 2.6 2 1 0 2 2 2 2 Restriction alleviation protein Lar DZR PF12773.2 gi|118431049|ref|NP_147234.2| - 9.9e-05 22.0 6.7 0.019 14.7 0.4 2.7 2 2 0 2 2 2 2 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|118431049|ref|NP_147234.2| - 0.00013 21.5 7.8 0.23 11.0 0.0 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|118431049|ref|NP_147234.2| - 0.00028 20.5 8.6 0.29 10.8 0.0 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|118431049|ref|NP_147234.2| - 0.00052 19.1 15.4 0.069 12.3 0.1 3.4 3 1 1 4 4 4 2 zinc-ribbon domain DUF2082 PF09855.4 gi|118431049|ref|NP_147234.2| - 0.0044 16.8 11.0 2.5 8.0 0.3 4.0 3 1 1 4 4 4 2 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_ribbon_recom PF13408.1 gi|118431049|ref|NP_147234.2| - 0.0052 17.0 14.5 0.26 11.5 1.2 3.0 2 1 0 2 2 2 2 Recombinase zinc beta ribbon domain Elf1 PF05129.8 gi|118431049|ref|NP_147234.2| - 0.0093 15.6 2.9 1.4 8.6 0.2 2.5 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.7 gi|118431049|ref|NP_147234.2| - 0.015 15.0 6.0 0.75 9.6 0.1 3.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|118431049|ref|NP_147234.2| - 0.02 14.5 14.2 1.1 9.0 0.2 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|118431049|ref|NP_147234.2| - 0.023 14.2 12.7 0.025 14.1 2.1 3.6 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|118431049|ref|NP_147234.2| - 0.037 13.9 14.0 1.6 8.7 0.1 4.3 4 0 0 4 4 4 0 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|118431049|ref|NP_147234.2| - 0.037 13.3 1.1 0.092 12.0 0.0 1.9 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger FdhE PF04216.7 gi|118431049|ref|NP_147234.2| - 0.038 13.7 5.6 0.3 10.7 0.2 2.1 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Baculo_LEF5_C PF11792.3 gi|118431049|ref|NP_147234.2| - 0.039 13.3 0.3 0.039 13.3 0.2 3.0 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain A2L_zn_ribbon PF08792.5 gi|118431049|ref|NP_147234.2| - 0.046 13.1 10.6 1.8 8.1 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain DUF1178 PF06676.6 gi|118431049|ref|NP_147234.2| - 0.08 13.1 0.9 0.34 11.0 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1178) zf-TFIIB PF13453.1 gi|118431049|ref|NP_147234.2| - 0.091 11.9 12.3 0.28 10.4 0.5 2.7 2 1 0 2 2 2 0 Transcription factor zinc-finger Terminase_GpA PF05876.7 gi|118431049|ref|NP_147234.2| - 0.11 10.8 6.6 0.052 11.8 1.4 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Cys_rich_CPCC PF14206.1 gi|118431049|ref|NP_147234.2| - 0.17 11.4 0.1 0.17 11.4 0.1 2.4 2 1 0 2 2 2 0 Cysteine-rich CPCC RecR PF02132.10 gi|118431049|ref|NP_147234.2| - 0.18 11.2 6.5 0.6 9.6 0.0 3.7 4 0 0 4 4 4 0 RecR protein DNA_ligase_ZBD PF03119.11 gi|118431049|ref|NP_147234.2| - 0.2 11.3 3.1 14 5.4 0.6 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.14 gi|118431049|ref|NP_147234.2| - 0.22 11.2 7.0 0.15 11.7 0.3 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-Mss51 PF13824.1 gi|118431049|ref|NP_147234.2| - 0.22 11.3 9.2 2.8 7.8 1.5 3.1 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L32p PF01783.18 gi|118431049|ref|NP_147234.2| - 0.23 11.6 4.1 12 6.1 0.7 3.5 2 1 1 3 3 3 0 Ribosomal L32p protein family Rubredoxin PF00301.15 gi|118431049|ref|NP_147234.2| - 0.33 10.8 12.3 18 5.2 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin zf-ZPR1 PF03367.8 gi|118431049|ref|NP_147234.2| - 0.4 9.8 3.7 2 7.5 0.1 2.6 1 1 2 3 3 3 0 ZPR1 zinc-finger domain DUF164 PF02591.10 gi|118431049|ref|NP_147234.2| - 0.55 10.0 7.0 5.2 6.9 0.1 3.5 4 0 0 4 4 4 0 Putative zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|118431049|ref|NP_147234.2| - 0.59 9.6 0.0 0.59 9.6 0.0 4.2 3 1 1 4 4 4 0 InsA N-terminal domain Nudix_N_2 PF14803.1 gi|118431049|ref|NP_147234.2| - 0.82 9.4 14.8 7.3 6.3 4.2 3.9 3 1 0 3 3 3 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|118431049|ref|NP_147234.2| - 0.83 9.4 5.2 5 6.9 0.1 3.0 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 TerY-C PF15616.1 gi|118431049|ref|NP_147234.2| - 0.9 9.4 4.2 1.4 8.8 0.1 2.5 1 1 1 2 2 2 0 TerY-C metal binding domain NMD3 PF04981.8 gi|118431049|ref|NP_147234.2| - 1.2 8.2 6.9 43 3.0 4.8 2.6 1 1 0 1 1 1 0 NMD3 family zf-ISL3 PF14690.1 gi|118431049|ref|NP_147234.2| - 1.3 9.1 0.1 1.3 9.1 0.1 3.9 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Opy2 PF09463.5 gi|118431049|ref|NP_147234.2| - 1.3 9.1 5.4 4.9 7.3 0.0 3.4 4 0 0 4 4 4 0 Opy2 protein NOB1_Zn_bind PF08772.6 gi|118431049|ref|NP_147234.2| - 1.7 8.4 9.0 7.4 6.4 0.1 3.6 3 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.14 gi|118431049|ref|NP_147234.2| - 1.8 8.1 12.1 2.2 7.8 1.8 3.1 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_S27e PF01667.12 gi|118431049|ref|NP_147234.2| - 1.9 8.0 5.9 2.1 7.9 0.0 2.8 3 1 0 3 3 2 0 Ribosomal protein S27 zf-MYND PF01753.13 gi|118431049|ref|NP_147234.2| - 2.3 8.1 10.1 6.2 6.7 0.7 3.3 2 2 0 2 2 2 0 MYND finger C1_1 PF00130.17 gi|118431049|ref|NP_147234.2| - 2.4 7.9 7.4 1.4 8.6 0.2 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF3797 PF12677.2 gi|118431049|ref|NP_147234.2| - 3 7.5 6.7 6.7 6.4 0.1 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) GFA PF04828.9 gi|118431049|ref|NP_147234.2| - 3.2 7.7 11.1 1.6 8.7 0.8 3.5 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme RNHCP PF12647.2 gi|118431049|ref|NP_147234.2| - 3.5 7.5 5.6 2.4 8.0 0.0 2.7 2 1 1 3 3 3 0 RNHCP domain Auto_anti-p27 PF06677.7 gi|118431049|ref|NP_147234.2| - 4.8 7.0 13.2 1.1 9.1 1.8 3.0 3 1 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS91 PF14319.1 gi|118431049|ref|NP_147234.2| - 5.7 6.4 9.4 2.3 7.7 0.1 3.3 2 2 0 2 2 2 0 Transposase zinc-binding domain zf-tcix PF14952.1 gi|118431049|ref|NP_147234.2| - 6.3 6.2 14.3 2.4 7.5 2.1 3.1 3 1 0 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding DNA_RNApol_7kD PF03604.8 gi|118431049|ref|NP_147234.2| - 6.4 6.3 14.7 3.9 7.0 0.1 4.1 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit PHD PF00628.24 gi|118431049|ref|NP_147234.2| - 8.4 6.1 8.9 13 5.5 0.2 2.9 2 1 1 3 3 3 0 PHD-finger zf-IS66 PF13005.2 gi|118431049|ref|NP_147234.2| - 9.2 6.3 11.6 16 5.5 0.1 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 RNA_pol_L_2 PF13656.1 gi|118431051|ref|NP_147236.2| - 1.4e-17 62.8 0.0 1.6e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|118431051|ref|NP_147236.2| - 0.049 12.7 0.0 0.16 11.1 0.0 1.8 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.4 gi|118431052|ref|NP_147237.2| - 1.3e-62 210.7 0.1 1.5e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) CbbQ_C PF08406.5 gi|118431052|ref|NP_147237.2| - 0.0099 15.8 1.3 0.013 15.5 0.2 1.7 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal DUF552 PF04472.7 gi|118431052|ref|NP_147237.2| - 0.11 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF552) PSK_trans_fac PF07704.6 gi|118431052|ref|NP_147237.2| - 0.17 12.6 0.2 0.17 12.6 0.2 2.5 2 1 1 3 3 3 0 Rv0623-like transcription factor ECR1_N PF14382.1 gi|14600717|ref|NP_147238.1| - 6e-09 35.0 0.6 5.8e-08 31.8 0.0 2.4 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|14600717|ref|NP_147238.1| - 3.9e-05 23.6 0.0 0.00055 19.9 0.0 2.6 1 1 1 2 2 2 1 S1 RNA binding domain OrfB_Zn_ribbon PF07282.6 gi|14600717|ref|NP_147238.1| - 5.5e-05 22.7 0.5 9.2e-05 22.0 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|14600717|ref|NP_147238.1| - 5.8e-05 22.5 1.3 0.0001 21.7 0.9 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|14600717|ref|NP_147238.1| - 0.0026 17.4 0.1 0.0038 16.9 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|14600717|ref|NP_147238.1| - 0.0045 16.2 3.1 0.41 10.0 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|14600717|ref|NP_147238.1| - 0.0056 15.8 2.4 0.018 14.2 1.7 1.8 1 1 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|14600717|ref|NP_147238.1| - 0.0091 15.4 1.1 0.016 14.6 0.7 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|14600717|ref|NP_147238.1| - 0.011 15.1 1.9 0.022 14.2 1.3 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|14600717|ref|NP_147238.1| - 0.012 15.4 0.8 0.019 14.7 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|14600717|ref|NP_147238.1| - 0.02 14.4 0.2 0.029 13.8 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_4 PF13717.1 gi|14600717|ref|NP_147238.1| - 0.037 13.7 2.5 0.16 11.6 1.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TerY-C PF15616.1 gi|14600717|ref|NP_147238.1| - 0.038 13.9 0.2 0.054 13.4 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain zinc_ribbon_5 PF13719.1 gi|14600717|ref|NP_147238.1| - 0.044 13.3 2.8 0.25 10.9 1.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF2318 PF10080.4 gi|14600717|ref|NP_147238.1| - 0.045 13.5 0.1 0.068 12.9 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) NOB1_Zn_bind PF08772.6 gi|14600717|ref|NP_147238.1| - 0.094 12.5 0.4 0.17 11.7 0.3 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|14600717|ref|NP_147238.1| - 0.2 11.1 4.2 3.8 7.1 1.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|14600717|ref|NP_147238.1| - 0.2 11.4 1.3 0.42 10.4 0.9 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.9 gi|14600717|ref|NP_147238.1| - 0.22 11.2 1.7 1.3 8.7 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|14600717|ref|NP_147238.1| - 0.33 10.9 3.3 0.64 10.0 2.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|14600717|ref|NP_147238.1| - 0.76 10.1 2.9 5.2 7.4 0.1 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Methyltransf_26 PF13659.1 gi|14600718|ref|NP_147239.1| - 5.6e-09 36.0 0.8 8.8e-09 35.4 0.5 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|14600718|ref|NP_147239.1| - 6.9e-05 22.3 0.0 8.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|14600718|ref|NP_147239.1| - 0.00089 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|14600718|ref|NP_147239.1| - 0.0049 17.4 0.1 0.0087 16.6 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|14600718|ref|NP_147239.1| - 0.024 14.0 0.0 0.034 13.5 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Diphthamide_syn PF01866.12 gi|118431053|ref|NP_147240.2| - 1.2e-66 225.1 0.0 1.4e-66 224.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Ribosomal_L16 PF00252.13 gi|14600720|ref|NP_147241.1| - 4.3e-37 126.8 0.1 4.9e-37 126.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e MoeA_N PF03453.12 gi|14600721|ref|NP_147242.1| - 1.6e-37 128.3 0.1 3.6e-37 127.2 0.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|14600721|ref|NP_147242.1| - 3.3e-14 52.5 0.0 9.3e-14 51.0 0.0 1.8 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|14600721|ref|NP_147242.1| - 1.8e-13 50.2 0.2 1.4e-11 44.2 0.1 3.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Cren7 PF11520.3 gi|14600722|ref|NP_147243.1| - 4e-29 100.0 2.3 4.3e-29 99.9 1.6 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 SfsA PF03749.8 gi|14600724|ref|NP_147245.1| - 4.9e-63 212.4 0.0 5.5e-63 212.3 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein NERD PF08378.6 gi|14600724|ref|NP_147245.1| - 0.0036 17.5 0.0 0.057 13.6 0.0 2.3 2 1 0 2 2 2 1 Nuclease-related domain Aminotran_3 PF00202.16 gi|14600726|ref|NP_147247.1| - 1e-107 359.9 0.0 1.2e-107 359.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|14600726|ref|NP_147247.1| - 0.008 15.1 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II MarR_2 PF12802.2 gi|14600727|ref|NP_147248.1| - 0.00036 20.1 1.2 0.00054 19.5 0.9 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|14600727|ref|NP_147248.1| - 0.00066 19.4 0.0 0.00089 19.0 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|14600727|ref|NP_147248.1| - 0.0017 17.4 0.2 0.0017 17.4 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Crp PF00325.15 gi|14600727|ref|NP_147248.1| - 0.002 17.5 0.3 0.003 16.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family MarR PF01047.17 gi|14600727|ref|NP_147248.1| - 0.005 16.5 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|14600727|ref|NP_147248.1| - 0.0088 15.9 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|14600727|ref|NP_147248.1| - 0.012 15.1 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|14600727|ref|NP_147248.1| - 0.012 15.0 1.6 0.017 14.5 1.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|14600727|ref|NP_147248.1| - 0.012 15.2 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|14600727|ref|NP_147248.1| - 0.018 15.0 1.9 0.034 14.1 1.3 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|14600727|ref|NP_147248.1| - 0.021 14.4 0.2 0.034 13.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|14600727|ref|NP_147248.1| - 0.044 13.3 0.0 0.081 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.1 gi|14600727|ref|NP_147248.1| - 0.051 13.8 0.0 0.075 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|14600727|ref|NP_147248.1| - 0.053 13.3 0.2 0.083 12.7 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|14600727|ref|NP_147248.1| - 0.078 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.1 gi|14600727|ref|NP_147248.1| - 0.12 12.1 3.0 0.1 12.3 0.8 1.9 1 1 1 2 2 2 0 Homeodomain-like domain Hjc PF01870.13 gi|14600729|ref|NP_147250.1| - 8.1e-29 99.0 0.0 1.1e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|14600729|ref|NP_147250.1| - 0.013 15.7 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain T2SE PF00437.15 gi|14600730|ref|NP_147251.1| - 2.2e-12 46.4 0.0 6.9e-12 44.8 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|14600730|ref|NP_147251.1| - 4.2e-05 23.0 0.0 0.00014 21.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|14600730|ref|NP_147251.1| - 0.00013 22.8 0.4 0.00064 20.5 0.1 2.5 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|14600730|ref|NP_147251.1| - 0.00018 21.5 0.0 0.00059 19.8 0.0 1.9 2 0 0 2 2 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|14600730|ref|NP_147251.1| - 0.00053 19.4 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|14600730|ref|NP_147251.1| - 0.00099 19.4 0.0 0.0029 17.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|14600730|ref|NP_147251.1| - 0.0038 16.1 0.0 0.0093 14.8 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain NACHT PF05729.7 gi|14600730|ref|NP_147251.1| - 0.0054 16.4 0.1 0.018 14.7 0.1 1.9 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.1 gi|14600730|ref|NP_147251.1| - 0.0083 16.0 0.3 0.021 14.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|14600730|ref|NP_147251.1| - 0.0094 15.4 0.0 0.022 14.2 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family RuvB_N PF05496.7 gi|14600730|ref|NP_147251.1| - 0.01 14.9 0.1 0.045 12.7 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|14600730|ref|NP_147251.1| - 0.012 15.4 1.8 0.025 14.3 0.0 2.4 3 0 0 3 3 3 0 Part of AAA domain AAA_22 PF13401.1 gi|14600730|ref|NP_147251.1| - 0.012 15.7 0.0 0.033 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|14600730|ref|NP_147251.1| - 0.015 14.4 0.0 0.044 12.8 0.0 1.8 2 0 0 2 2 1 0 KaiC ArgK PF03308.11 gi|14600730|ref|NP_147251.1| - 0.015 14.1 0.0 0.035 12.8 0.0 1.6 1 0 0 1 1 1 0 ArgK protein AAA PF00004.24 gi|14600730|ref|NP_147251.1| - 0.017 15.3 0.0 0.035 14.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|14600730|ref|NP_147251.1| - 0.018 14.7 0.0 0.051 13.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|14600730|ref|NP_147251.1| - 0.021 15.1 0.0 0.045 14.0 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.1 gi|14600730|ref|NP_147251.1| - 0.022 14.6 0.1 0.068 13.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain KTI12 PF08433.5 gi|14600730|ref|NP_147251.1| - 0.029 13.5 0.0 0.085 12.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|14600730|ref|NP_147251.1| - 0.04 13.4 0.1 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|14600730|ref|NP_147251.1| - 0.04 13.3 0.2 0.067 12.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|14600730|ref|NP_147251.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|14600730|ref|NP_147251.1| - 0.062 12.3 0.0 0.13 11.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|14600730|ref|NP_147251.1| - 0.078 12.6 0.1 0.29 10.8 0.0 2.0 2 0 0 2 2 1 0 NTPase NIR_SIR_ferr PF03460.12 gi|14600730|ref|NP_147251.1| - 0.081 12.5 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain AAA_14 PF13173.1 gi|14600730|ref|NP_147251.1| - 0.094 12.6 0.0 0.47 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|14600730|ref|NP_147251.1| - 0.11 11.3 0.0 0.78 8.5 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain PhoH PF02562.11 gi|14600730|ref|NP_147251.1| - 0.12 11.5 0.2 0.57 9.3 0.1 2.0 1 1 1 2 2 2 0 PhoH-like protein ATP_bind_1 PF03029.12 gi|14600730|ref|NP_147251.1| - 0.13 11.8 0.1 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.8 gi|14600730|ref|NP_147251.1| - 0.14 11.0 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|14600730|ref|NP_147251.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|14600730|ref|NP_147251.1| - 0.15 11.6 0.0 0.41 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|14600730|ref|NP_147251.1| - 0.18 11.3 0.1 0.72 9.4 0.0 2.0 2 0 0 2 2 1 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|14600730|ref|NP_147251.1| - 0.18 11.8 0.0 0.49 10.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain ThiI PF02568.9 gi|118431057|ref|NP_147253.2| - 7.2e-44 149.6 0.0 1e-43 149.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|118431057|ref|NP_147253.2| - 2.9e-25 88.8 0.2 4.3e-25 88.2 0.1 1.2 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|118431057|ref|NP_147253.2| - 0.0019 17.5 0.0 0.55 9.4 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC HTH_38 PF13936.1 gi|118431059|ref|NP_147255.2| - 2.2e-06 27.0 0.1 4.9e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|118431059|ref|NP_147255.2| - 7.3e-06 25.2 1.3 0.00018 20.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|118431059|ref|NP_147255.2| - 1.4e-05 24.5 0.0 2.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|118431059|ref|NP_147255.2| - 3.7e-05 23.0 0.5 0.00043 19.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|118431059|ref|NP_147255.2| - 0.00029 20.4 0.3 0.00058 19.4 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_40 PF14493.1 gi|118431059|ref|NP_147255.2| - 0.00032 20.8 0.6 0.00079 19.5 0.4 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|118431059|ref|NP_147255.2| - 0.0017 17.8 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_31 PF13560.1 gi|118431059|ref|NP_147255.2| - 0.003 17.7 0.3 0.0055 16.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|118431059|ref|NP_147255.2| - 0.0052 16.0 0.5 0.043 13.1 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|118431059|ref|NP_147255.2| - 0.0061 16.0 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|118431059|ref|NP_147255.2| - 0.0062 16.2 0.3 0.018 14.7 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB KorB PF08535.5 gi|118431059|ref|NP_147255.2| - 0.0068 16.5 0.0 0.018 15.1 0.0 1.7 2 0 0 2 2 1 1 KorB domain HTH_19 PF12844.2 gi|118431059|ref|NP_147255.2| - 0.008 16.2 0.5 0.029 14.4 0.3 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|118431059|ref|NP_147255.2| - 0.011 15.1 1.1 0.035 13.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|118431059|ref|NP_147255.2| - 0.013 15.6 0.0 0.03 14.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix PaaX PF07848.7 gi|118431059|ref|NP_147255.2| - 0.022 14.7 0.2 0.086 12.8 0.1 1.9 1 1 0 1 1 1 0 PaaX-like protein HTH_28 PF13518.1 gi|118431059|ref|NP_147255.2| - 0.024 14.6 0.1 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|118431059|ref|NP_147255.2| - 0.032 14.4 0.1 0.32 11.2 0.1 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|118431059|ref|NP_147255.2| - 0.035 13.9 0.1 0.094 12.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|118431059|ref|NP_147255.2| - 0.04 13.5 0.0 0.096 12.3 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.10 gi|118431059|ref|NP_147255.2| - 0.06 12.7 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_10 PF04967.7 gi|118431059|ref|NP_147255.2| - 0.071 12.6 0.3 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_IclR PF09339.5 gi|118431059|ref|NP_147255.2| - 0.081 12.5 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2379 PF09543.5 gi|118431059|ref|NP_147255.2| - 0.087 12.7 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) HTH_35 PF13693.1 gi|118431059|ref|NP_147255.2| - 0.11 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3489 PF11994.3 gi|118431059|ref|NP_147255.2| - 0.12 12.2 0.2 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3489) HTH_3 PF01381.17 gi|118431059|ref|NP_147255.2| - 0.16 11.8 0.2 0.16 11.8 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix ABC2_membrane_2 PF12679.2 gi|118431060|ref|NP_147256.2| - 3.1e-13 49.2 17.7 6.4e-13 48.1 12.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|118431060|ref|NP_147256.2| - 3.9e-12 45.8 14.1 6.3e-12 45.1 9.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|118431060|ref|NP_147256.2| - 0.004 16.2 6.0 0.004 16.2 4.2 1.6 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|118431060|ref|NP_147256.2| - 0.0043 16.3 2.4 0.0043 16.3 1.7 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein 7TM_GPCR_Srh PF10318.4 gi|118431060|ref|NP_147256.2| - 0.026 13.3 0.3 0.16 10.7 0.1 2.0 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srh CUE PF02845.11 gi|118431060|ref|NP_147256.2| - 0.079 12.4 0.5 0.13 11.8 0.4 1.4 1 0 0 1 1 1 0 CUE domain ABC_tran PF00005.22 gi|118431062|ref|NP_147257.2| - 1.4e-19 70.7 0.0 2.6e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431062|ref|NP_147257.2| - 1.6e-14 54.6 0.0 2.1e-09 37.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431062|ref|NP_147257.2| - 0.025 13.8 0.0 1.2 8.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|118431062|ref|NP_147257.2| - 0.051 13.4 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|118431062|ref|NP_147257.2| - 0.097 11.7 0.0 0.64 8.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Exonuc_VII_S PF02609.11 gi|118431062|ref|NP_147257.2| - 0.15 11.8 0.3 13 5.6 0.0 2.4 2 0 0 2 2 2 0 Exonuclease VII small subunit PIN PF01850.16 gi|118431063|ref|YP_874827.1| - 2.2e-10 40.9 0.1 2.6e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF2508 PF10704.4 gi|118431064|ref|YP_874828.1| - 0.14 12.3 0.3 0.8 9.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2508) PIN_2 PF10130.4 gi|14600738|ref|NP_147259.1| - 2.3e-24 85.9 0.0 2.7e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|14600738|ref|NP_147259.1| - 9.1e-08 32.4 1.4 1.3e-07 32.0 0.9 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|14600738|ref|NP_147259.1| - 1.9e-06 28.5 0.1 3.1e-06 27.8 0.0 1.4 1 1 0 1 1 1 1 PIN domain DUF3437 PF11919.3 gi|118431065|ref|YP_874829.1| - 0.0071 16.0 0.0 0.0087 15.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3437) GerE PF00196.14 gi|118431065|ref|YP_874829.1| - 0.073 12.3 0.0 1.6 8.1 0.0 2.1 1 1 1 2 2 2 0 Bacterial regulatory proteins, luxR family DUF104 PF01954.11 gi|118431066|ref|NP_147260.2| - 2.4e-06 27.4 1.4 2.6e-06 27.3 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Antitoxin-MazE PF04014.13 gi|118431068|ref|NP_147261.2| - 1.9e-10 40.2 0.9 4.5e-10 39.0 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE TOBE PF03459.12 gi|118431068|ref|NP_147261.2| - 0.036 14.1 0.2 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 TOBE domain PLU-1 PF08429.6 gi|118431068|ref|NP_147261.2| - 0.056 12.3 0.7 0.12 11.2 0.5 1.4 1 1 0 1 1 1 0 PLU-1-like protein DASH_Dad3 PF08656.5 gi|118431068|ref|NP_147261.2| - 0.086 12.5 1.6 0.13 11.9 0.4 1.8 2 0 0 2 2 2 0 DASH complex subunit Dad3 ZapA PF05164.8 gi|118431068|ref|NP_147261.2| - 0.11 12.4 0.8 0.99 9.4 0.5 2.3 1 1 0 1 1 1 0 Cell division protein ZapA Cdc6_C PF09079.6 gi|118431069|ref|NP_147262.2| - 2.2e-23 81.7 0.3 2.2e-23 81.7 0.2 2.1 3 0 0 3 3 3 1 CDC6, C terminal AAA_16 PF13191.1 gi|118431069|ref|NP_147262.2| - 8.2e-14 52.0 2.5 1.2e-11 44.9 0.1 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|118431069|ref|NP_147262.2| - 1.1e-11 44.9 0.0 2.4e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118431069|ref|NP_147262.2| - 7.2e-06 26.2 0.0 1.7e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|118431069|ref|NP_147262.2| - 9.2e-05 22.2 0.0 0.00019 21.1 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|118431069|ref|NP_147262.2| - 0.0076 15.6 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|118431069|ref|NP_147262.2| - 0.0077 15.1 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|118431069|ref|NP_147262.2| - 0.018 14.7 0.9 0.056 13.1 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain DEAD PF00270.24 gi|118431069|ref|NP_147262.2| - 0.025 14.0 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|118431069|ref|NP_147262.2| - 0.043 14.6 1.8 0.38 11.5 1.3 2.7 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|118431069|ref|NP_147262.2| - 0.051 13.0 0.0 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain RuvB_N PF05496.7 gi|118431069|ref|NP_147262.2| - 0.051 12.6 0.0 0.46 9.5 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|118431069|ref|NP_147262.2| - 0.063 13.0 0.1 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|118431069|ref|NP_147262.2| - 0.088 11.5 0.1 4.5 5.8 0.0 2.2 1 1 0 2 2 2 0 TIP49 C-terminus Zeta_toxin PF06414.7 gi|118431069|ref|NP_147262.2| - 0.092 11.8 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF99 PF01949.11 gi|118431070|ref|NP_147263.2| - 1.1e-26 93.0 0.0 1.4e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Mob_synth_C PF06463.8 gi|118431072|ref|NP_147264.2| - 7.9e-23 80.5 0.0 1.2e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|118431072|ref|NP_147264.2| - 2.8e-22 79.6 0.0 1e-21 77.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|118431072|ref|NP_147264.2| - 3.5e-05 23.7 0.0 0.0001 22.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|118431072|ref|NP_147264.2| - 0.012 15.7 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|118431073|ref|NP_147267.2| - 2.1e-12 46.8 3.0 3.1e-12 46.3 2.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|118431073|ref|NP_147267.2| - 9e-12 44.6 2.5 2e-11 43.4 1.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|118431073|ref|NP_147267.2| - 1.8e-11 44.2 1.6 2.3e-11 43.8 1.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|118431073|ref|NP_147267.2| - 3.7e-11 42.1 13.2 1.5e-06 27.5 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|118431073|ref|NP_147267.2| - 1.1e-09 38.6 3.3 1.1e-05 25.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|118431073|ref|NP_147267.2| - 6.8e-09 35.1 10.7 0.00028 20.6 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|118431073|ref|NP_147267.2| - 7.4e-09 35.0 10.6 0.0003 20.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|118431073|ref|NP_147267.2| - 1.8e-08 34.6 18.9 3.1e-07 30.6 5.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|118431073|ref|NP_147267.2| - 7.8e-07 29.2 9.5 1.4e-05 25.2 6.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|118431073|ref|NP_147267.2| - 7.9e-06 25.7 9.9 0.0061 16.7 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|118431073|ref|NP_147267.2| - 3e-05 23.8 5.9 0.018 14.8 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|118431073|ref|NP_147267.2| - 0.00013 22.5 3.1 0.11 13.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|118431073|ref|NP_147267.2| - 0.0002 21.6 17.7 0.0024 18.2 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|118431073|ref|NP_147267.2| - 0.0016 19.1 11.6 0.044 14.5 8.3 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|118431073|ref|NP_147267.2| - 0.0017 17.9 2.7 0.046 13.3 0.0 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|118431073|ref|NP_147267.2| - 0.0055 17.0 8.0 0.13 12.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain E1-E2_ATPase PF00122.15 gi|118431074|ref|NP_147270.2| - 9.8 5.1 11.5 0.94 8.4 0.1 2.6 2 0 0 2 2 2 0 E1-E2 ATPase FAD-oxidase_C PF02913.14 gi|14600751|ref|NP_147272.1| - 3.5e-66 223.0 0.5 4.6e-66 222.6 0.3 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|14600751|ref|NP_147272.1| - 3.1e-37 127.1 0.1 5.7e-37 126.2 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Mon1 PF03164.9 gi|14600751|ref|NP_147272.1| - 0.093 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Trafficking protein Mon1 DUF2204 PF09970.4 gi|118431075|ref|NP_147273.2| - 2e-59 200.0 0.0 2.3e-59 199.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) PK PF00224.16 gi|14600753|ref|NP_147274.1| - 2.2e-89 299.4 0.0 3.2e-89 298.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|14600753|ref|NP_147274.1| - 2.2e-05 23.9 0.0 4.9e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|14600753|ref|NP_147274.1| - 6.3e-05 21.9 0.1 0.0002 20.3 0.0 1.8 3 0 0 3 3 3 1 HpcH/HpaI aldolase/citrate lyase family Pribosyltran PF00156.22 gi|118431076|ref|NP_147275.2| - 5.3e-18 64.9 0.0 2.5e-17 62.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PaaX PF07848.7 gi|118431076|ref|NP_147275.2| - 0.13 12.2 0.1 0.3 11.1 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein Nitroreductase PF00881.19 gi|118431077|ref|NP_147276.2| - 4.4e-25 88.4 0.0 5.1e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family IF-2B PF01008.12 gi|118431078|ref|NP_147277.2| - 1.6e-06 27.3 0.0 2.1e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family RNase_HII PF01351.13 gi|118431079|ref|NP_147280.2| - 8.4e-43 146.3 0.0 9.7e-43 146.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII tRNA_m1G_MT PF01746.16 gi|14600760|ref|NP_147281.1| - 2.1e-34 118.7 0.0 2.8e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|14600760|ref|NP_147281.1| - 0.022 14.1 0.0 0.053 12.9 0.0 1.7 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase Lactamase_B_2 PF12706.2 gi|118431080|ref|NP_147282.2| - 6.2e-05 22.6 0.0 0.0001 21.9 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|118431080|ref|NP_147282.2| - 0.075 12.6 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily EMG1 PF03587.9 gi|14600762|ref|NP_147283.1| - 1.7e-46 158.0 0.0 1.9e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase DUF2153 PF09921.4 gi|118431081|ref|NP_147284.2| - 7.8e-55 183.8 2.1 9e-55 183.6 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Trm112p PF03966.11 gi|14600764|ref|NP_147285.1| - 9.8e-18 64.2 0.5 1.3e-17 63.8 0.4 1.2 1 0 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|14600764|ref|NP_147285.1| - 0.00036 19.7 2.3 0.1 11.9 0.7 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|14600764|ref|NP_147285.1| - 0.042 13.0 0.9 1.2 8.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|14600764|ref|NP_147285.1| - 0.077 12.5 0.3 2.5 7.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|14600764|ref|NP_147285.1| - 0.18 11.2 0.3 0.18 11.2 0.2 2.8 3 0 0 3 3 3 0 HypF finger PhnA_Zn_Ribbon PF08274.7 gi|14600764|ref|NP_147285.1| - 0.91 9.3 5.2 8.7 6.2 0.7 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_3 PF14369.1 gi|14600764|ref|NP_147285.1| - 4.4 7.3 9.4 18 5.4 0.0 3.2 2 1 0 2 2 2 0 zinc-finger Endonuclease_5 PF04493.9 gi|14600765|ref|NP_147286.1| - 2.6e-46 157.6 0.0 3.1e-46 157.3 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|14600765|ref|NP_147286.1| - 0.0088 15.1 0.1 0.016 14.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF99 Proteasome PF00227.21 gi|118431082|ref|NP_147287.2| - 1.8e-51 174.1 0.0 2e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit TF_Zn_Ribbon PF08271.7 gi|118431083|ref|NP_147288.2| - 4.3e-08 32.3 1.0 6.5e-08 31.7 0.7 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|118431083|ref|NP_147288.2| - 0.0001 21.6 0.9 0.00015 21.0 0.6 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|118431083|ref|NP_147288.2| - 0.0093 15.1 0.9 0.025 13.7 0.6 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|118431083|ref|NP_147288.2| - 0.02 14.3 1.9 0.034 13.6 1.3 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|118431083|ref|NP_147288.2| - 0.044 13.6 0.1 0.069 12.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|118431083|ref|NP_147288.2| - 0.054 13.0 0.9 0.1 12.1 0.6 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|118431083|ref|NP_147288.2| - 0.074 13.0 0.2 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|118431083|ref|NP_147288.2| - 0.36 11.1 4.0 2.3 8.5 0.1 2.6 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain RRN7 PF11781.3 gi|118431083|ref|NP_147288.2| - 1.2 8.7 3.5 0.37 10.3 0.6 1.6 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 MMR_HSR1 PF01926.18 gi|118431084|ref|NP_147290.2| - 3e-15 56.1 0.0 5.8e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|118431084|ref|NP_147290.2| - 2.6e-08 33.3 0.0 4.7e-08 32.4 0.0 1.5 1 1 0 1 1 1 1 Ferrous iron transport protein B NOG1 PF06858.9 gi|118431084|ref|NP_147290.2| - 4.4e-07 29.6 0.0 8.3e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) AAA_17 PF13207.1 gi|118431084|ref|NP_147290.2| - 2.4e-05 25.1 0.4 0.00067 20.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|118431084|ref|NP_147290.2| - 0.00023 21.1 0.5 0.00091 19.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|118431084|ref|NP_147290.2| - 0.0016 17.8 0.0 0.11 11.9 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_19 PF13245.1 gi|118431084|ref|NP_147290.2| - 0.0028 17.3 2.9 0.023 14.4 0.0 3.2 3 1 0 3 3 3 1 Part of AAA domain AAA_16 PF13191.1 gi|118431084|ref|NP_147290.2| - 0.0047 16.9 3.2 0.0073 16.3 0.4 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|118431084|ref|NP_147290.2| - 0.0072 16.2 0.3 0.027 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|118431084|ref|NP_147290.2| - 0.0084 16.4 2.0 0.039 14.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain AIG1 PF04548.11 gi|118431084|ref|NP_147290.2| - 0.0086 15.1 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 AIG1 family AAA_14 PF13173.1 gi|118431084|ref|NP_147290.2| - 0.015 15.1 0.0 0.25 11.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|118431084|ref|NP_147290.2| - 0.017 14.9 0.3 1.8 8.3 0.1 2.4 1 1 1 2 2 2 0 Dynamin family KTI12 PF08433.5 gi|118431084|ref|NP_147290.2| - 0.021 14.0 0.0 0.067 12.3 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|118431084|ref|NP_147290.2| - 0.024 14.0 0.2 0.13 11.6 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|118431084|ref|NP_147290.2| - 0.027 14.6 0.0 0.12 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|118431084|ref|NP_147290.2| - 0.034 13.8 0.0 0.08 12.6 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.1 gi|118431084|ref|NP_147290.2| - 0.051 13.1 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.14 gi|118431084|ref|NP_147290.2| - 0.055 12.9 0.0 1.6 8.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|118431084|ref|NP_147290.2| - 0.094 11.6 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Miro PF08477.8 gi|118431084|ref|NP_147290.2| - 0.12 12.8 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein RTC PF01137.16 gi|118431085|ref|NP_147291.2| - 4.6e-82 274.2 0.0 5.3e-82 274.0 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|118431085|ref|NP_147291.2| - 4.1e-23 81.3 0.0 7.5e-23 80.5 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_2 PF01467.21 gi|118431086|ref|NP_147292.2| - 1.9e-14 54.0 0.0 2.5e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Nol1_Nop2_Fmu PF01189.12 gi|14600772|ref|NP_147293.1| - 5.1e-51 173.7 0.0 6e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Cons_hypoth95 PF03602.10 gi|14600772|ref|NP_147293.1| - 0.0029 17.0 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 FtsJ PF01728.14 gi|14600772|ref|NP_147293.1| - 0.0047 16.9 0.0 0.012 15.5 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.12 gi|14600772|ref|NP_147293.1| - 0.018 13.9 0.2 0.036 12.9 0.0 1.6 2 0 0 2 2 2 0 Fibrillarin PSRT PF07636.6 gi|14600772|ref|NP_147293.1| - 0.034 13.5 1.9 4.3 6.8 0.0 2.6 2 0 0 2 2 2 0 PSRT Met_10 PF02475.11 gi|14600772|ref|NP_147293.1| - 0.038 13.5 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|14600772|ref|NP_147293.1| - 0.04 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|14600772|ref|NP_147293.1| - 0.061 12.7 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|14600772|ref|NP_147293.1| - 0.15 11.6 0.0 0.52 9.8 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain UPF0113 PF03657.8 gi|118431087|ref|NP_147294.2| - 3.5e-61 205.5 0.0 3.9e-61 205.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu_2 PF13636.1 gi|118431087|ref|NP_147294.2| - 0.0006 19.8 0.0 0.00094 19.2 0.0 1.3 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis FKBP_C PF00254.23 gi|14600774|ref|NP_147295.1| - 4.8e-12 45.7 0.3 1.2e-11 44.4 0.0 1.9 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Fe-ADH_2 PF13685.1 gi|118431088|ref|NP_147296.2| - 4.4e-61 206.3 0.1 5.3e-61 206.0 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|118431088|ref|NP_147296.2| - 1.2e-25 90.0 2.8 3.1e-25 88.6 1.9 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|118431088|ref|NP_147296.2| - 8.5e-12 44.5 6.4 1.3e-06 27.5 0.1 3.9 3 1 0 3 3 3 3 3-dehydroquinate synthase Proteasome PF00227.21 gi|118431089|ref|NP_147297.2| - 3.7e-55 186.1 0.3 4.2e-55 185.9 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|118431090|ref|NP_147298.2| - 4e-35 120.5 0.0 1.4e-34 118.7 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|118431090|ref|NP_147298.2| - 9.2e-20 71.1 0.0 2.2e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|118431090|ref|NP_147298.2| - 8.6e-13 47.8 0.0 1.4e-11 44.0 0.0 2.6 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|118431090|ref|NP_147298.2| - 3.1e-10 39.9 0.0 3.2e-09 36.5 0.0 2.3 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|118431090|ref|NP_147298.2| - 0.0017 18.1 0.0 0.0062 16.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Tospo_nucleocap PF01533.11 gi|118431090|ref|NP_147298.2| - 0.19 10.9 0.0 0.33 10.1 0.0 1.3 1 0 0 1 1 1 0 Tospovirus nucleocapsid protein PDEase_II PF02112.10 gi|118431090|ref|NP_147298.2| - 0.28 10.0 0.1 0.44 9.4 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II PUA PF01472.15 gi|118431091|ref|NP_147299.2| - 7.5e-18 64.0 1.3 1.1e-17 63.5 0.9 1.2 1 0 0 1 1 1 1 PUA domain LSM PF01423.17 gi|14600779|ref|NP_147300.1| - 6.4e-18 64.0 0.2 7.2e-18 63.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|14600779|ref|NP_147300.1| - 0.00074 19.3 0.0 0.00084 19.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|14600780|ref|NP_147301.1| - 9.7e-26 89.3 13.6 1.1e-25 89.1 9.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|14600780|ref|NP_147301.1| - 0.01 15.6 0.5 0.012 15.3 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-RING_5 PF14634.1 gi|14600780|ref|NP_147301.1| - 0.13 12.0 1.0 0.18 11.5 0.7 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4 PF00097.20 gi|14600780|ref|NP_147301.1| - 0.24 11.0 1.4 0.37 10.4 1.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FYVE_2 PF02318.11 gi|14600780|ref|NP_147301.1| - 0.33 10.8 2.3 0.36 10.7 1.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|14600780|ref|NP_147301.1| - 2.4 8.0 7.4 12 5.7 5.2 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|14600780|ref|NP_147301.1| - 2.8 7.2 4.9 19 4.6 3.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M24 PF00557.19 gi|118431092|ref|NP_147302.2| - 2.6e-57 193.7 0.0 3.5e-57 193.3 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|118431092|ref|NP_147302.2| - 3.4e-09 37.2 0.0 6.9e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain FmdA_AmdA PF03069.10 gi|14600782|ref|NP_147303.1| - 9.8e-144 478.5 0.0 1.2e-143 478.3 0.0 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family Inhibitor_Mig-6 PF11555.3 gi|14600782|ref|NP_147303.1| - 0.2 12.0 1.9 0.4 11.0 1.3 1.5 1 0 0 1 1 1 0 EGFR receptor inhibitor Mig-6 TroA PF01297.12 gi|118431093|ref|NP_147304.2| - 1.4e-19 70.3 0.0 1.6e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family TP_methylase PF00590.15 gi|118431093|ref|NP_147304.2| - 0.017 14.8 0.2 0.75 9.4 0.2 2.4 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases ABC_tran PF00005.22 gi|118431094|ref|NP_147305.2| - 2.2e-24 86.3 0.0 3e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431094|ref|NP_147305.2| - 2.1e-14 54.1 0.0 4.1e-06 26.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|118431094|ref|NP_147305.2| - 3.2e-07 30.8 0.2 4.8e-07 30.3 0.2 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|118431094|ref|NP_147305.2| - 2.6e-05 23.5 0.1 0.012 14.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|118431094|ref|NP_147305.2| - 0.00023 20.6 0.0 0.00042 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|118431094|ref|NP_147305.2| - 0.00041 19.5 0.0 0.18 10.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain T2SE PF00437.15 gi|118431094|ref|NP_147305.2| - 0.0021 16.9 0.0 0.0032 16.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|118431094|ref|NP_147305.2| - 0.01 15.3 0.0 0.04 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|118431094|ref|NP_147305.2| - 0.017 15.2 0.0 0.03 14.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|118431094|ref|NP_147305.2| - 0.019 14.4 0.6 0.17 11.2 0.1 2.0 1 1 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|118431094|ref|NP_147305.2| - 0.028 14.4 0.1 0.052 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|118431094|ref|NP_147305.2| - 0.029 14.0 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|118431094|ref|NP_147305.2| - 0.03 13.9 0.1 0.055 13.1 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|118431094|ref|NP_147305.2| - 0.044 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|118431094|ref|NP_147305.2| - 0.084 12.6 1.4 0.16 11.7 0.0 2.2 3 0 0 3 3 3 0 Part of AAA domain AAA_17 PF13207.1 gi|118431094|ref|NP_147305.2| - 0.1 13.3 0.1 0.31 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|118431094|ref|NP_147305.2| - 0.11 12.6 0.1 0.22 11.7 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|118431094|ref|NP_147305.2| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Miro PF08477.8 gi|118431094|ref|NP_147305.2| - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein DUF3584 PF12128.3 gi|118431094|ref|NP_147305.2| - 0.24 8.6 0.0 0.32 8.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC-3 PF00950.12 gi|118431095|ref|NP_147306.2| - 1.1e-14 54.3 22.5 1.3e-14 54.0 15.6 1.0 1 0 0 1 1 1 1 ABC 3 transport family RHH_3 PF12651.2 gi|14600786|ref|NP_147307.1| - 1.1e-15 57.0 0.1 1.6e-15 56.5 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|14600786|ref|NP_147307.1| - 1.1e-06 28.2 0.6 2e-06 27.4 0.4 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.6 gi|14600786|ref|NP_147307.1| - 0.00027 20.7 0.4 0.00059 19.6 0.1 1.6 1 1 0 1 1 1 1 NikR C terminal nickel binding domain Glyco_tran_WbsX PF14307.1 gi|118431096|ref|NP_147308.2| - 3.8e-05 23.0 0.0 0.059 12.5 0.1 2.6 3 0 0 3 3 3 2 Glycosyltransferase WbsX ATP_bind_3 PF01171.15 gi|118431097|ref|NP_147309.2| - 2.1e-09 37.1 0.0 3.6e-09 36.3 0.0 1.4 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|118431097|ref|NP_147309.2| - 0.00091 18.1 0.0 0.0013 17.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase DZR PF12773.2 gi|118431097|ref|NP_147309.2| - 0.0043 16.8 8.2 0.022 14.5 0.4 3.2 3 0 0 3 3 3 1 Double zinc ribbon zf-dskA_traR PF01258.12 gi|118431097|ref|NP_147309.2| - 0.12 12.1 15.4 0.2 11.4 2.5 3.8 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger RecR PF02132.10 gi|118431097|ref|NP_147309.2| - 0.16 11.4 0.2 0.16 11.4 0.2 2.9 4 0 0 4 4 4 0 RecR protein Zn_Tnp_IS1595 PF12760.2 gi|118431097|ref|NP_147309.2| - 7.3 6.4 12.7 0.42 10.4 1.2 3.3 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Ribosomal_L13e PF01294.13 gi|14600790|ref|NP_147311.1| - 9.1e-11 41.5 0.0 1e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e MobB PF03205.9 gi|118431098|ref|NP_147312.2| - 2.3e-05 24.1 0.0 5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|118431098|ref|NP_147312.2| - 0.0058 16.1 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|118431098|ref|NP_147312.2| - 0.019 15.2 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|118431098|ref|NP_147312.2| - 0.021 15.6 0.0 0.057 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|118431098|ref|NP_147312.2| - 0.037 13.9 0.0 0.078 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|118431098|ref|NP_147312.2| - 0.057 13.3 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|118431098|ref|NP_147312.2| - 0.12 11.7 0.1 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain HTH_27 PF13463.1 gi|118431099|ref|NP_147314.2| - 0.052 13.8 0.9 0.24 11.7 0.0 2.3 2 1 1 3 3 3 0 Winged helix DNA-binding domain CheR_N PF03705.10 gi|118431099|ref|NP_147314.2| - 0.071 12.4 0.6 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain MFS_1 PF07690.11 gi|118431100|ref|YP_874832.1| - 1.6e-13 50.1 76.3 5.9e-11 41.6 33.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|118431100|ref|YP_874832.1| - 0.0086 14.6 5.4 0.012 14.2 3.7 1.2 1 0 0 1 1 1 1 LacY proton/sugar symporter UPRTase PF14681.1 gi|118431101|ref|NP_147316.2| - 1.9e-43 148.0 0.0 2.5e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|118431101|ref|NP_147316.2| - 6.1e-07 29.2 0.1 9.4e-07 28.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain THUMP PF02926.12 gi|118431102|ref|NP_147317.2| - 4.2e-30 104.5 0.2 1.5e-29 102.7 0.0 1.9 2 0 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.13 gi|118431103|ref|YP_874833.1| - 2e-23 82.0 0.0 2.3e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|118431104|ref|NP_147319.2| - 3.3e-09 36.7 0.0 3.5e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Neural_ProG_Cyt PF06567.6 gi|118431104|ref|NP_147319.2| - 0.061 13.4 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain DUF655 PF04919.7 gi|14600798|ref|NP_147320.1| - 1.8e-83 278.6 0.1 2.2e-83 278.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|14600798|ref|NP_147320.1| - 0.00055 19.8 1.9 0.00058 19.7 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|14600798|ref|NP_147320.1| - 0.00092 19.2 0.5 0.0043 17.0 0.1 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|14600798|ref|NP_147320.1| - 0.018 14.7 2.5 0.02 14.5 0.0 2.4 3 0 0 3 3 3 0 Helix-hairpin-helix motif Flu_M1 PF00598.14 gi|14600798|ref|NP_147320.1| - 0.17 11.3 0.1 0.3 10.4 0.0 1.4 1 0 0 1 1 1 0 Influenza Matrix protein (M1) HHH_5 PF14520.1 gi|14600798|ref|NP_147320.1| - 0.2 11.8 1.3 0.53 10.5 0.1 2.2 2 1 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.15 gi|14600800|ref|NP_147322.1| - 2.8e-29 101.9 0.0 3.7e-29 101.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|14600800|ref|NP_147322.1| - 3.5e-06 27.0 0.0 5.9e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|14600800|ref|NP_147322.1| - 0.0015 17.9 0.0 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain REV PF00424.13 gi|14600800|ref|NP_147322.1| - 0.046 13.6 2.3 0.11 12.4 0.8 2.0 2 0 0 2 2 2 0 REV protein (anti-repression trans-activator protein) DREV PF05219.7 gi|14600800|ref|NP_147322.1| - 0.1 11.4 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase PrmA PF06325.8 gi|118431105|ref|NP_147323.2| - 0.00011 21.4 0.2 0.00015 21.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|118431105|ref|NP_147323.2| - 0.00014 21.8 0.6 0.00029 20.8 0.3 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118431105|ref|NP_147323.2| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|118431105|ref|NP_147323.2| - 0.061 13.8 0.1 0.11 13.1 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain SpoU_methylase PF00588.14 gi|118431106|ref|NP_147324.2| - 3.2e-27 95.1 0.0 5e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Deltaretro_Tax PF05599.6 gi|118431106|ref|NP_147324.2| - 0.014 15.7 1.1 0.02 15.2 0.1 1.8 2 0 0 2 2 2 0 Deltaretrovirus Tax protein UPF0020 PF01170.13 gi|14600803|ref|NP_147325.1| - 3e-54 183.3 0.0 4.1e-54 182.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|14600803|ref|NP_147325.1| - 4.9e-27 94.2 0.2 1.4e-26 92.8 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|14600803|ref|NP_147325.1| - 5.6e-21 74.9 0.0 7.8e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 THUMP domain MTS PF05175.9 gi|14600803|ref|NP_147325.1| - 3.5e-12 46.0 0.0 6.7e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|14600803|ref|NP_147325.1| - 1.2e-08 34.7 0.0 1.9e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|14600803|ref|NP_147325.1| - 2e-07 30.8 0.0 3e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|14600803|ref|NP_147325.1| - 3e-05 24.5 0.0 5.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|14600803|ref|NP_147325.1| - 4.3e-05 23.1 0.0 6.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|14600803|ref|NP_147325.1| - 8.6e-05 21.7 0.0 0.00012 21.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|14600803|ref|NP_147325.1| - 0.0001 21.7 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.15 gi|14600803|ref|NP_147325.1| - 0.00075 18.6 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|14600803|ref|NP_147325.1| - 0.00086 19.7 0.0 0.0071 16.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|14600803|ref|NP_147325.1| - 0.0031 17.0 0.0 0.0053 16.2 0.0 1.5 2 0 0 2 2 2 1 DNA methylase N6_Mtase PF02384.11 gi|14600803|ref|NP_147325.1| - 0.01 14.9 0.0 0.021 13.9 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_25 PF13649.1 gi|14600803|ref|NP_147325.1| - 0.015 15.6 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Peripla_BP_6 PF13458.1 gi|118431107|ref|NP_147326.2| - 7.8e-37 127.3 4.1 9.6e-37 127.1 2.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|118431107|ref|NP_147326.2| - 7.3e-08 31.5 0.0 2.2e-07 30.0 0.0 1.7 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|118431107|ref|NP_147326.2| - 3.9e-07 29.1 0.0 0.0061 15.3 0.0 2.4 2 1 0 2 2 2 2 Periplasmic binding protein domain Fe-ADH_2 PF13685.1 gi|118431107|ref|NP_147326.2| - 4.6e-05 22.8 0.0 8.4e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Peripla_BP_4 PF13407.1 gi|118431107|ref|NP_147326.2| - 0.00057 19.3 0.1 0.0047 16.3 0.0 2.2 2 0 0 2 2 2 1 Periplasmic binding protein domain Fe-ADH PF00465.14 gi|118431107|ref|NP_147326.2| - 0.0015 17.2 0.0 0.0035 16.0 0.0 1.5 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DUF2139 PF09910.4 gi|14600805|ref|NP_147327.1| - 4.1e-164 545.5 0.0 5e-164 545.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) F420_oxidored PF03807.12 gi|118431108|ref|NP_147329.2| - 3e-11 43.6 0.1 6.3e-11 42.5 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|118431108|ref|NP_147329.2| - 6.8e-08 31.7 0.0 7.9e-08 31.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|118431108|ref|NP_147329.2| - 2.8e-07 30.5 0.0 3.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|118431108|ref|NP_147329.2| - 5.1e-07 29.0 0.1 1.1e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|118431108|ref|NP_147329.2| - 6.6e-05 22.6 0.2 0.00013 21.7 0.2 1.3 1 0 0 1 1 1 1 Rossmann-like domain GFO_IDH_MocA PF01408.17 gi|118431108|ref|NP_147329.2| - 0.00018 22.0 0.1 0.0003 21.2 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold XdhC_C PF13478.1 gi|118431108|ref|NP_147329.2| - 0.0041 17.4 0.0 0.006 16.9 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|118431108|ref|NP_147329.2| - 0.0059 16.2 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|118431108|ref|NP_147329.2| - 0.0075 16.0 0.1 0.52 10.0 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|118431108|ref|NP_147329.2| - 0.093 12.7 0.0 0.21 11.6 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain DUF2156 PF09924.4 gi|118431108|ref|NP_147329.2| - 0.094 11.5 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) CM_2 PF01817.16 gi|118431109|ref|YP_874834.1| - 1.3e-13 50.8 2.8 1.7e-13 50.4 1.9 1.2 1 0 0 1 1 1 1 Chorismate mutase type II Chorismate_synt PF01264.16 gi|14600808|ref|NP_147331.1| - 6.2e-128 426.1 0.0 7.2e-128 425.9 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|14600809|ref|NP_147332.1| - 3.1e-87 292.7 0.0 3.5e-87 292.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_C PF08544.8 gi|14600810|ref|NP_147333.1| - 3.2e-06 27.2 1.1 9.4e-06 25.7 0.7 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|14600810|ref|NP_147333.1| - 1.2e-05 25.2 1.0 1.2e-05 25.2 0.7 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain Shikimate_dh_N PF08501.6 gi|118431110|ref|NP_147334.2| - 1.5e-16 60.1 0.0 2.6e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|118431110|ref|NP_147334.2| - 3.3e-11 43.4 0.0 5e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|118431110|ref|NP_147334.2| - 6.7e-05 22.8 2.9 0.0001 22.2 2.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|118431110|ref|NP_147334.2| - 0.0013 17.8 0.0 0.0019 17.2 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase KR PF08659.5 gi|118431110|ref|NP_147334.2| - 0.0014 18.2 0.6 0.0024 17.5 0.4 1.3 1 0 0 1 1 1 1 KR domain ThiF PF00899.16 gi|118431110|ref|NP_147334.2| - 0.0018 18.1 1.2 0.0035 17.1 0.8 1.4 1 0 0 1 1 1 1 ThiF family OCD_Mu_crystall PF02423.10 gi|118431110|ref|NP_147334.2| - 0.0028 16.4 0.0 0.005 15.6 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|118431110|ref|NP_147334.2| - 0.0051 17.2 0.3 0.0099 16.2 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.19 gi|118431110|ref|NP_147334.2| - 0.024 13.5 6.2 0.04 12.7 4.3 1.3 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|118431110|ref|NP_147334.2| - 0.036 13.2 0.0 0.051 12.7 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.17 gi|118431110|ref|NP_147334.2| - 0.14 11.0 5.4 0.18 10.6 3.8 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|118431110|ref|NP_147334.2| - 0.72 9.6 3.6 0.4 10.5 0.9 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DHquinase_I PF01487.10 gi|14600813|ref|NP_147336.1| - 2.6e-10 40.3 0.0 3.1e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Inositol_P PF00459.20 gi|14600813|ref|NP_147336.1| - 0.087 12.1 0.1 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Inositol monophosphatase family DHQ_synthase PF01761.15 gi|14600814|ref|NP_147337.1| - 1.4e-70 237.2 0.0 1.9e-70 236.7 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|14600814|ref|NP_147337.1| - 0.00043 19.6 0.9 0.0026 17.1 0.0 2.1 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|14600814|ref|NP_147337.1| - 0.0011 17.6 3.4 0.036 12.6 0.8 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.15 gi|118431111|ref|NP_147338.2| - 6.6e-82 274.2 0.0 8.3e-82 273.9 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|118431111|ref|NP_147338.2| - 1e-05 24.8 0.0 1.5e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 NeuB family Nsp1 PF11501.3 gi|118431111|ref|NP_147338.2| - 0.0016 18.2 0.1 0.023 14.5 0.0 2.6 3 0 0 3 3 3 1 Non structural protein Nsp1 PGM_PMM_II PF02879.11 gi|118431111|ref|NP_147338.2| - 0.0053 17.0 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PEP_mutase PF13714.1 gi|118431111|ref|NP_147338.2| - 0.055 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Transket_pyr PF02779.19 gi|14600816|ref|NP_147339.1| - 3.8e-33 114.4 0.0 7e-33 113.6 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|14600816|ref|NP_147339.1| - 5.5e-25 87.6 0.0 1.1e-24 86.7 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transketolase_N PF00456.16 gi|118431112|ref|NP_147340.2| - 4.1e-28 98.1 0.0 9.3e-28 96.9 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|118431112|ref|NP_147340.2| - 2e-05 23.6 0.0 2.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|118431112|ref|NP_147340.2| - 0.0007 18.4 0.0 0.00092 18.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.5 gi|118431112|ref|NP_147340.2| - 0.0043 15.6 0.0 0.0053 15.3 0.0 1.1 1 0 0 1 1 1 1 XFP N-terminal domain ECH PF00378.15 gi|118431114|ref|NP_147343.2| - 8.3e-42 142.9 0.0 9.2e-42 142.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family HTH_45 PF14947.1 gi|118431117|ref|NP_147346.2| - 3.3e-16 58.8 0.0 3.7e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|118431117|ref|NP_147346.2| - 1.8e-06 27.5 0.1 2.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|118431117|ref|NP_147346.2| - 9.5e-06 25.8 0.1 1.4e-05 25.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|118431117|ref|NP_147346.2| - 1.1e-05 24.9 0.1 2e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|118431117|ref|NP_147346.2| - 0.00095 18.5 0.1 0.0024 17.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|118431117|ref|NP_147346.2| - 0.0016 18.0 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|118431117|ref|NP_147346.2| - 0.0045 17.0 0.0 0.0083 16.2 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|118431117|ref|NP_147346.2| - 0.0067 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain EAP30 PF04157.11 gi|118431117|ref|NP_147346.2| - 0.011 14.8 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_42 PF06224.7 gi|118431117|ref|NP_147346.2| - 0.012 14.9 0.2 0.017 14.4 0.2 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|118431117|ref|NP_147346.2| - 0.027 14.5 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF4364 PF14277.1 gi|118431117|ref|NP_147346.2| - 0.032 13.8 0.0 0.037 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) AphA_like PF14557.1 gi|118431117|ref|NP_147346.2| - 0.039 13.5 0.1 0.071 12.6 0.0 1.4 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator MerR_2 PF13591.1 gi|118431117|ref|NP_147346.2| - 0.08 12.5 0.2 0.24 11.0 0.0 1.8 1 1 1 2 2 2 0 MerR HTH family regulatory protein TFIIE_alpha PF02002.12 gi|118431117|ref|NP_147346.2| - 0.083 12.4 0.1 0.23 10.9 0.0 1.7 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_IclR PF09339.5 gi|118431117|ref|NP_147346.2| - 0.09 12.3 0.6 0.25 10.9 0.0 2.0 2 1 0 2 2 2 0 IclR helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|118431117|ref|NP_147346.2| - 0.11 12.1 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Pyr_redox_2 PF07992.9 gi|118431118|ref|NP_147347.2| - 3e-13 50.1 0.0 6.9e-13 48.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|118431118|ref|NP_147347.2| - 0.0033 17.7 0.0 0.27 11.6 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase IncA PF04156.9 gi|118431119|ref|NP_147349.2| - 0.0023 17.5 0.3 0.0027 17.3 0.2 1.1 1 0 0 1 1 1 1 IncA protein DUF4446 PF14584.1 gi|118431119|ref|NP_147349.2| - 0.0035 17.1 0.1 0.0039 17.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4446) DUF2140 PF09911.4 gi|118431119|ref|NP_147349.2| - 0.0051 16.0 0.0 0.0062 15.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2140) DivIC PF04977.10 gi|118431119|ref|NP_147349.2| - 0.012 15.1 1.2 0.022 14.2 0.8 1.5 1 1 0 1 1 1 0 Septum formation initiator Bap31 PF05529.7 gi|118431119|ref|NP_147349.2| - 0.014 14.8 0.1 0.016 14.6 0.1 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF1517 PF07466.6 gi|118431119|ref|NP_147349.2| - 0.015 14.3 0.0 0.015 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) DUF1469 PF07332.6 gi|118431119|ref|NP_147349.2| - 0.016 14.9 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|118431119|ref|NP_147349.2| - 0.017 14.5 0.1 0.02 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) ATG27 PF09451.5 gi|118431119|ref|NP_147349.2| - 0.035 13.3 1.0 0.035 13.3 0.7 1.2 1 0 0 1 1 1 0 Autophagy-related protein 27 DUF788 PF05620.6 gi|118431119|ref|NP_147349.2| - 0.037 13.8 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF788) Myc_target_1 PF15179.1 gi|118431119|ref|NP_147349.2| - 0.091 12.3 0.0 0.097 12.2 0.0 1.1 1 0 0 1 1 1 0 Myc target protein 1 OST3_OST6 PF04756.8 gi|118431119|ref|NP_147349.2| - 0.099 12.2 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 OST3 / OST6 family DUF106 PF01956.11 gi|118431119|ref|NP_147349.2| - 0.13 11.7 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF106 GP41 PF00517.12 gi|118431119|ref|NP_147349.2| - 0.25 10.8 1.3 0.35 10.4 0.6 1.5 1 1 0 1 1 1 0 Retroviral envelope protein HTH_28 PF13518.1 gi|14600827|ref|NP_147350.1| - 0.002 18.0 0.0 0.0059 16.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|14600827|ref|NP_147350.1| - 0.0044 16.8 0.1 0.03 14.1 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|14600827|ref|NP_147350.1| - 0.0067 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|14600827|ref|NP_147350.1| - 0.09 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Transposase NUDIX PF00293.23 gi|14600828|ref|NP_147351.1| - 7.9e-18 64.4 0.1 1.1e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain HAD_2 PF13419.1 gi|14600829|ref|NP_147352.1| - 0.11 12.6 0.2 2 8.6 0.0 2.2 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase MoaE PF02391.12 gi|14600831|ref|NP_147354.1| - 3.9e-17 62.1 0.2 5.5e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|14600831|ref|NP_147354.1| - 0.08 13.3 0.0 0.25 11.7 0.0 2.0 1 1 0 1 1 1 0 ThiS family VWA_2 PF13519.1 gi|118431122|ref|NP_147355.2| - 1.9e-20 73.6 0.0 2.3e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|118431122|ref|NP_147355.2| - 2.1e-09 37.3 0.0 2.5e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain GARS_C PF02843.11 gi|118431122|ref|NP_147355.2| - 0.068 13.3 0.1 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain PIN_4 PF13638.1 gi|118431123|ref|NP_147356.2| - 0.0087 16.1 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 PIN domain Peptidase_S8 PF00082.17 gi|14600834|ref|NP_147357.1| - 8.7e-29 100.5 2.1 2.2e-28 99.2 1.4 1.7 1 1 0 1 1 1 1 Subtilase family Rib PF08428.5 gi|14600834|ref|NP_147357.1| - 0.055 13.2 1.5 0.25 11.1 1.0 2.2 1 0 0 1 1 1 0 Rib/alpha-like repeat NPV_P10 PF05531.7 gi|118431124|ref|NP_147358.2| - 3.9e-08 33.4 47.3 0.0021 18.2 0.4 7.2 1 1 4 6 6 6 4 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.7 gi|118431124|ref|NP_147358.2| - 1.3e-06 28.2 31.5 0.0062 16.2 1.0 5.6 2 1 3 6 6 6 3 Laminin Domain II Baculo_PEP_C PF04513.7 gi|118431124|ref|NP_147358.2| - 1.7e-06 27.9 48.0 0.0008 19.2 6.8 3.9 1 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|118431124|ref|NP_147358.2| - 6.7e-06 25.5 43.3 0.00038 19.7 7.9 3.8 1 1 2 3 3 3 2 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|118431124|ref|NP_147358.2| - 5.3e-05 22.0 12.2 0.016 13.9 2.2 2.5 1 1 0 2 2 2 2 Spc7 kinetochore protein AAA_13 PF13166.1 gi|118431124|ref|NP_147358.2| - 0.00044 18.8 12.8 0.066 11.6 2.1 2.6 1 1 1 2 2 2 2 AAA domain WEMBL PF05701.6 gi|118431124|ref|NP_147358.2| - 0.00047 18.7 14.7 0.012 14.0 0.8 2.1 1 1 1 2 2 2 2 Weak chloroplast movement under blue light Syntaxin PF00804.20 gi|118431124|ref|NP_147358.2| - 0.00086 19.4 13.2 0.033 14.3 1.4 4.2 1 1 2 3 3 3 1 Syntaxin Filament PF00038.16 gi|118431124|ref|NP_147358.2| - 0.0016 17.9 5.6 0.45 9.9 1.3 2.4 1 1 1 2 2 2 2 Intermediate filament protein EzrA PF06160.7 gi|118431124|ref|NP_147358.2| - 0.0021 16.3 13.0 0.014 13.6 9.0 2.1 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA EMP24_GP25L PF01105.19 gi|118431124|ref|NP_147358.2| - 0.0025 17.5 1.2 0.015 15.0 0.0 2.6 2 1 0 2 2 2 1 emp24/gp25L/p24 family/GOLD MCPsignal PF00015.16 gi|118431124|ref|NP_147358.2| - 0.0028 17.2 36.6 0.36 10.3 4.4 3.8 1 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain TBPIP PF07106.8 gi|118431124|ref|NP_147358.2| - 0.0033 16.9 7.2 0.32 10.5 0.1 3.5 2 2 1 3 3 3 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IFT57 PF10498.4 gi|118431124|ref|NP_147358.2| - 0.0052 15.5 8.3 0.082 11.6 0.1 2.4 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 DUF1664 PF07889.7 gi|118431124|ref|NP_147358.2| - 0.0062 16.3 26.2 0.18 11.6 0.5 5.3 1 1 6 7 7 7 4 Protein of unknown function (DUF1664) MCR_D PF02505.9 gi|118431124|ref|NP_147358.2| - 0.0069 15.9 1.3 0.072 12.6 0.1 2.5 2 0 0 2 2 2 1 Methyl-coenzyme M reductase operon protein D FH2 PF02181.18 gi|118431124|ref|NP_147358.2| - 0.016 14.0 1.1 2.9 6.7 0.0 2.3 2 0 0 2 2 2 0 Formin Homology 2 Domain Rootletin PF15035.1 gi|118431124|ref|NP_147358.2| - 0.029 14.3 0.1 0.44 10.5 0.0 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF3584 PF12128.3 gi|118431124|ref|NP_147358.2| - 0.034 11.4 7.1 0.085 10.1 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Tropomyosin PF00261.15 gi|118431124|ref|NP_147358.2| - 0.035 13.1 3.9 0.47 9.5 0.1 2.4 2 0 0 2 2 2 0 Tropomyosin Apolipoprotein PF01442.13 gi|118431124|ref|NP_147358.2| - 0.053 13.0 8.0 3.3 7.1 2.5 2.7 1 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|118431124|ref|NP_147358.2| - 0.054 13.0 16.8 0.22 11.1 0.2 4.1 2 1 3 5 5 5 0 IncA protein Snapin_Pallidin PF14712.1 gi|118431124|ref|NP_147358.2| - 0.079 13.2 9.3 12 6.2 0.1 4.2 2 1 3 5 5 5 0 Snapin/Pallidin Nup54 PF13874.1 gi|118431124|ref|NP_147358.2| - 0.2 11.3 2.3 3.6 7.2 0.1 3.1 2 2 2 4 4 4 0 Nucleoporin complex subunit 54 Mod_r PF07200.8 gi|118431124|ref|NP_147358.2| - 0.2 11.5 4.6 2.2 8.1 0.0 2.7 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CENP-F_leu_zip PF10473.4 gi|118431124|ref|NP_147358.2| - 0.2 11.4 4.4 7.9 6.3 0.1 2.9 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.6 gi|118431124|ref|NP_147358.2| - 0.21 11.5 14.0 11 5.9 0.1 6.7 4 3 4 8 8 8 0 Flagella accessory protein C (FlaC) CCDC144C PF14915.1 gi|118431124|ref|NP_147358.2| - 0.29 9.9 2.9 2.7 6.8 0.0 2.2 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region RmuC PF02646.11 gi|118431124|ref|NP_147358.2| - 0.41 9.4 10.5 0.44 9.3 0.2 3.9 1 1 3 5 5 5 0 RmuC family Atg14 PF10186.4 gi|118431124|ref|NP_147358.2| - 0.44 9.4 0.8 1.4 7.7 0.2 1.8 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DHC_N2 PF08393.8 gi|118431124|ref|NP_147358.2| - 0.78 8.1 9.5 0.29 9.5 1.2 2.2 1 1 0 2 2 2 0 Dynein heavy chain, N-terminal region 2 Spectrin PF00435.16 gi|118431124|ref|NP_147358.2| - 0.78 10.0 8.3 2.2 8.5 0.6 3.0 2 1 1 3 3 2 0 Spectrin repeat DUF869 PF05911.6 gi|118431124|ref|NP_147358.2| - 0.81 7.8 17.1 10 4.1 11.9 2.0 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) Cortex-I_coil PF09304.5 gi|118431124|ref|NP_147358.2| - 1.1 9.3 5.5 23 5.0 0.2 3.1 2 1 0 3 3 3 0 Cortexillin I, coiled coil DivIVA PF05103.8 gi|118431124|ref|NP_147358.2| - 1.2 9.1 12.5 1.1 9.3 1.9 3.8 2 2 2 4 4 3 0 DivIVA protein COG5 PF10392.4 gi|118431124|ref|NP_147358.2| - 1.4 8.8 10.5 4.3 7.2 1.1 3.4 2 1 1 3 3 3 0 Golgi transport complex subunit 5 DASH_Dad2 PF08654.5 gi|118431124|ref|NP_147358.2| - 2.3 8.2 16.5 0.46 10.4 1.4 4.4 2 1 1 4 4 4 0 DASH complex subunit Dad2 Myosin_tail_1 PF01576.14 gi|118431124|ref|NP_147358.2| - 2.5 5.7 7.2 11 3.6 5.0 1.8 1 1 0 1 1 1 0 Myosin tail Cast PF10174.4 gi|118431124|ref|NP_147358.2| - 2.8 5.9 9.5 2.2 6.2 0.8 2.3 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone DUF972 PF06156.8 gi|118431124|ref|NP_147358.2| - 4.6 7.6 7.0 63 3.9 0.1 4.1 1 1 3 5 5 4 0 Protein of unknown function (DUF972) Tropomyosin_1 PF12718.2 gi|118431124|ref|NP_147358.2| - 5 6.9 6.7 13 5.6 0.4 2.8 2 1 0 3 3 3 0 Tropomyosin like DUF812 PF05667.6 gi|118431124|ref|NP_147358.2| - 6.4 5.1 10.7 1.5 7.2 2.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Bacillus_HBL PF05791.6 gi|118431124|ref|NP_147358.2| - 7.7 5.8 15.7 2.6 7.3 1.0 3.4 2 2 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF16 PF01519.11 gi|118431124|ref|NP_147358.2| - 7.9 6.7 12.0 13 6.1 0.5 3.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF3407 PF11887.3 gi|118431124|ref|NP_147358.2| - 9.1 5.4 23.9 1 8.6 3.8 3.5 1 1 3 4 4 4 0 Protein of unknown function (DUF3407) CarboxypepD_reg PF13620.1 gi|118431127|ref|NP_147369.2| - 5.3e-30 103.3 21.4 4.9e-10 39.3 0.3 11.9 11 0 0 11 11 11 8 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|118431127|ref|NP_147369.2| - 6e-17 61.4 0.0 6.2e-07 29.3 0.0 8.1 9 0 0 9 9 9 3 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|118431127|ref|NP_147369.2| - 4e-13 48.9 6.7 0.05 13.3 0.0 9.5 11 0 0 11 11 11 3 PEGA domain DUF2012 PF09430.5 gi|118431127|ref|NP_147369.2| - 1.3e-05 25.0 0.5 4 7.3 0.0 6.1 6 1 0 6 6 6 1 Protein of unknown function (DUF2012) MG1 PF11974.3 gi|118431127|ref|NP_147369.2| - 4.7e-05 23.8 0.9 0.00095 19.6 0.0 3.5 2 1 2 4 4 4 1 Alpha-2-macroglobulin MG1 domain phage_tail_N PF08400.5 gi|118431127|ref|NP_147369.2| - 0.0002 21.0 5.9 0.76 9.4 0.0 5.3 7 0 0 7 7 7 2 Prophage tail fibre N-terminal Y_Y_Y PF07495.8 gi|118431127|ref|NP_147369.2| - 0.023 14.4 0.7 18 5.1 0.0 5.1 7 0 0 7 7 7 0 Y_Y_Y domain PQQ_3 PF13570.1 gi|118431127|ref|NP_147369.2| - 0.077 13.3 0.1 0.077 13.3 0.1 5.5 7 0 0 7 7 7 0 PQQ-like domain DUF4198 PF10670.4 gi|118431127|ref|NP_147369.2| - 0.14 12.1 0.2 25 4.7 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4198) DUF3639 PF12341.3 gi|118431127|ref|NP_147369.2| - 4.2 7.4 9.4 4.5 7.3 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) MazG PF03819.12 gi|118431128|ref|YP_874837.1| - 8.3e-13 48.0 0.1 1.1e-12 47.6 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|118431128|ref|YP_874837.1| - 6.4e-06 26.3 0.1 7.1e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|118431128|ref|YP_874837.1| - 0.0023 17.8 0.0 0.0029 17.4 0.0 1.1 1 0 0 1 1 1 1 MazG-like family PcrB PF01884.12 gi|118431129|ref|NP_147371.2| - 7.1e-61 205.4 0.0 8.5e-61 205.1 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|118431129|ref|NP_147371.2| - 9.5e-06 25.0 0.1 2.2e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein B12-binding PF02310.14 gi|118431129|ref|NP_147371.2| - 0.0042 16.9 1.9 0.38 10.6 0.0 2.4 2 0 0 2 2 2 2 B12 binding domain PucR PF07905.6 gi|118431129|ref|NP_147371.2| - 0.0055 16.2 0.0 1.2 8.7 0.0 2.5 2 0 0 2 2 2 2 Purine catabolism regulatory protein-like family Ribul_P_3_epim PF00834.14 gi|118431129|ref|NP_147371.2| - 0.0099 15.0 0.1 0.018 14.1 0.0 1.5 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family FAD_binding_4 PF01565.18 gi|118431129|ref|NP_147371.2| - 0.028 13.8 0.3 0.94 8.9 0.0 2.4 2 0 0 2 2 2 0 FAD binding domain DAGK_cat PF00781.19 gi|118431129|ref|NP_147371.2| - 0.052 12.9 0.2 0.15 11.5 0.1 1.7 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain NanE PF04131.9 gi|118431129|ref|NP_147371.2| - 0.087 11.7 1.3 4.4 6.2 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Glu_synthase PF01645.12 gi|118431129|ref|NP_147371.2| - 0.44 9.4 4.1 0.95 8.3 0.1 2.0 2 0 0 2 2 2 0 Conserved region in glutamate synthase Elf1 PF05129.8 gi|118431130|ref|NP_147373.2| - 3.5e-21 74.6 0.3 4.3e-21 74.3 0.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-CSL PF05207.8 gi|118431130|ref|NP_147373.2| - 0.0011 18.4 0.5 0.0017 17.8 0.3 1.3 1 0 0 1 1 1 1 CSL zinc finger Lar_restr_allev PF14354.1 gi|118431130|ref|NP_147373.2| - 0.0014 18.8 1.1 0.0026 17.9 0.7 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar Molybdop_Fe4S4 PF04879.11 gi|118431130|ref|NP_147373.2| - 0.057 13.2 0.5 0.057 13.2 0.4 2.1 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Nudix_N_2 PF14803.1 gi|118431130|ref|NP_147373.2| - 0.16 11.7 2.1 6.7 6.4 0.5 2.5 2 0 0 2 2 2 0 Nudix N-terminal Ribosomal_L32p PF01783.18 gi|118431130|ref|NP_147373.2| - 0.18 12.0 5.8 0.2 11.8 0.9 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family HypA PF01155.14 gi|118431130|ref|NP_147373.2| - 0.19 11.4 1.2 3.3 7.4 0.0 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|118431130|ref|NP_147373.2| - 0.42 10.4 2.2 1.5 8.7 1.5 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.7 gi|118431130|ref|NP_147373.2| - 0.8 9.0 9.0 1.8 7.9 0.0 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|118431130|ref|NP_147373.2| - 1.1 8.5 9.0 0.55 9.5 3.4 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|118431130|ref|NP_147373.2| - 1.4 8.7 5.5 0.61 9.9 0.1 2.3 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|118431130|ref|NP_147373.2| - 1.7 8.2 6.0 7.9 6.0 0.2 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain AdoHcyase PF05221.12 gi|118431131|ref|NP_147374.2| - 8.6e-72 241.2 0.0 1.1e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|118431131|ref|NP_147374.2| - 2.4e-59 199.7 0.8 4.8e-59 198.8 0.5 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|118431131|ref|NP_147374.2| - 2.2e-12 46.5 0.4 4.6e-12 45.4 0.3 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|118431131|ref|NP_147374.2| - 4.8e-09 35.8 0.4 8.2e-09 35.0 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|118431131|ref|NP_147374.2| - 0.00039 20.4 0.4 0.0017 18.3 0.1 2.3 2 1 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|118431131|ref|NP_147374.2| - 0.0017 17.9 2.1 0.0029 17.1 0.8 1.6 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|118431131|ref|NP_147374.2| - 0.0085 15.7 2.7 0.011 15.4 0.7 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|118431131|ref|NP_147374.2| - 0.039 14.3 0.2 0.098 13.1 0.2 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|118431131|ref|NP_147374.2| - 0.043 13.9 0.5 0.2 11.7 0.5 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|118431131|ref|NP_147374.2| - 0.052 13.1 1.1 0.12 11.9 0.7 1.6 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_7 PF13241.1 gi|118431131|ref|NP_147374.2| - 0.076 13.2 0.3 0.18 12.0 0.2 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Zn_Tnp_IS1595 PF12760.2 gi|118431132|ref|NP_147376.2| - 0.0043 16.8 2.0 0.015 15.0 1.4 1.8 1 1 0 1 1 1 1 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|118431132|ref|NP_147376.2| - 0.0088 15.8 1.0 0.046 13.5 0.0 2.0 1 1 2 3 3 3 1 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_recom PF13408.1 gi|118431132|ref|NP_147376.2| - 0.03 14.5 0.3 0.047 13.9 0.2 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Rubredoxin PF00301.15 gi|118431132|ref|NP_147376.2| - 0.037 13.8 0.0 6.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin Vps39_2 PF10367.4 gi|118431132|ref|NP_147376.2| - 0.058 13.5 1.2 0.23 11.6 0.1 1.9 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 zf-FPG_IleRS PF06827.9 gi|118431132|ref|NP_147376.2| - 0.062 12.9 4.2 1.5 8.5 0.2 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-RING_3 PF14369.1 gi|118431132|ref|NP_147376.2| - 0.078 12.9 0.2 12 5.9 0.0 2.5 2 0 0 2 2 2 0 zinc-finger zf-RING_4 PF14570.1 gi|118431132|ref|NP_147376.2| - 0.092 12.3 0.6 3.7 7.2 0.0 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|118431132|ref|NP_147376.2| - 0.093 12.0 0.7 4.3 6.7 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding GFA PF04828.9 gi|118431132|ref|NP_147376.2| - 0.11 12.5 0.5 12 5.9 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TFIIS_C PF01096.13 gi|118431132|ref|NP_147376.2| - 0.13 11.9 1.4 0.85 9.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Auto_anti-p27 PF06677.7 gi|118431132|ref|NP_147376.2| - 0.16 11.7 1.1 12 5.7 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.1 gi|118431132|ref|NP_147376.2| - 1.2 8.3 3.5 6.1 6.1 2.6 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-HIT PF04438.11 gi|118431132|ref|NP_147376.2| - 1.2 8.8 4.3 13 5.5 0.3 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-NADH-PPase PF09297.6 gi|118431132|ref|NP_147376.2| - 1.6 8.2 4.8 20 4.7 0.1 2.7 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain VIT1 PF01988.14 gi|14600854|ref|NP_147378.1| - 1.4e-17 63.9 22.4 3.2e-16 59.4 15.5 2.0 1 1 0 1 1 1 1 VIT family COX14 PF14880.1 gi|14600854|ref|NP_147378.1| - 0.039 13.5 0.1 0.081 12.5 0.1 1.5 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Synaptobrevin PF00957.16 gi|14600854|ref|NP_147378.1| - 0.066 12.8 0.8 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 Synaptobrevin DUF2182 PF09948.4 gi|14600854|ref|NP_147378.1| - 0.79 9.6 6.3 0.25 11.2 1.9 1.8 1 1 1 2 2 2 0 Predicted metal-binding integral membrane protein (DUF2182) Peptidase_M20 PF01546.23 gi|118431133|ref|NP_147379.2| - 1.3e-38 132.4 0.1 1.7e-38 132.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|118431133|ref|NP_147379.2| - 4.5e-19 68.2 0.0 9e-19 67.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain SBP_bac_5 PF00496.17 gi|118431133|ref|NP_147379.2| - 0.066 12.0 0.0 0.097 11.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Lactamase_B_2 PF12706.2 gi|14600857|ref|NP_147381.1| - 8.7e-15 54.7 0.0 1.3e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|14600857|ref|NP_147381.1| - 1e-10 41.6 1.4 5e-10 39.3 0.9 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|14600857|ref|NP_147381.1| - 0.00065 19.4 0.0 0.0011 18.7 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RuvA_C PF07499.8 gi|14600857|ref|NP_147381.1| - 0.058 13.5 0.1 0.27 11.4 0.0 2.2 1 0 0 1 1 1 0 RuvA, C-terminal domain AdoMet_dc PF02675.10 gi|118431134|ref|NP_147382.2| - 1.1e-31 108.8 0.0 1.2e-31 108.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Thioredoxin PF00085.15 gi|14600860|ref|NP_147384.1| - 5.4e-06 26.0 0.0 1.2e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|14600860|ref|NP_147384.1| - 4.9e-05 23.5 0.2 0.00032 20.8 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Radical_SAM PF04055.16 gi|118431135|ref|NP_147386.2| - 9.4e-14 51.9 0.0 2.7e-13 50.4 0.0 1.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|118431135|ref|NP_147386.2| - 2.1e-06 27.9 0.0 3.7e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|118431135|ref|NP_147386.2| - 5.6e-06 26.3 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAGK_cat PF00781.19 gi|118431136|ref|NP_147388.2| - 0.076 12.4 0.1 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PPDK_N PF01326.14 gi|118431137|ref|NP_147390.2| - 5.4e-101 337.9 0.0 1.1e-100 336.8 0.0 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|118431137|ref|NP_147390.2| - 1e-82 277.3 0.0 1.5e-82 276.8 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|118431137|ref|NP_147390.2| - 5.9e-30 102.6 1.0 1.3e-29 101.5 0.7 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Sec61_beta PF03911.11 gi|118431138|ref|NP_147391.2| - 7.6e-15 54.4 0.9 8.7e-15 54.2 0.6 1.1 1 0 0 1 1 1 1 Sec61beta family THF_DHG_CYH_C PF02882.14 gi|118431138|ref|NP_147391.2| - 0.047 12.7 0.0 0.053 12.6 0.0 1.0 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1743 PF08489.6 gi|118431140|ref|NP_147394.2| - 5.3e-30 103.5 0.0 8e-30 103.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) zf-NADH-PPase PF09297.6 gi|118431140|ref|NP_147394.2| - 5.9e-05 22.4 7.8 0.00011 21.6 5.4 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|118431140|ref|NP_147394.2| - 0.00012 21.6 0.6 0.0002 20.9 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|118431140|ref|NP_147394.2| - 0.0073 16.1 0.4 0.013 15.2 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|118431140|ref|NP_147394.2| - 0.047 12.9 1.7 7.4 5.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain tRNA_anti-codon PF01336.20 gi|118431140|ref|NP_147394.2| - 0.086 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|118431140|ref|NP_147394.2| - 0.33 10.8 5.4 2 8.3 0.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|118431140|ref|NP_147394.2| - 0.47 10.3 2.1 11 6.0 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|118431140|ref|NP_147394.2| - 0.65 9.5 4.2 6.2 6.4 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431140|ref|NP_147394.2| - 0.75 9.4 9.1 0.57 9.8 0.5 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|118431140|ref|NP_147394.2| - 0.94 8.7 3.4 2.1 7.6 2.4 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF1610 PF07754.6 gi|118431140|ref|NP_147394.2| - 2.2 8.4 7.3 7.2 6.8 5.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) AsnC_trans_reg PF01037.16 gi|118431141|ref|YP_874838.1| - 3e-13 49.2 0.5 3.4e-13 49.1 0.4 1.0 1 0 0 1 1 1 1 AsnC family DUF1896 PF08989.5 gi|118431141|ref|YP_874838.1| - 0.04 13.8 0.0 0.05 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1896) tRNA-synt_His PF13393.1 gi|118431143|ref|NP_147398.2| - 5.7e-52 176.7 0.0 7e-52 176.4 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|118431143|ref|NP_147398.2| - 1.1e-16 60.9 0.0 1.6e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|118431143|ref|NP_147398.2| - 5.1e-14 51.9 0.0 1.1e-13 50.8 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|118431143|ref|NP_147398.2| - 0.005 15.6 0.5 0.038 12.7 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|118431143|ref|NP_147398.2| - 0.034 13.3 0.0 0.086 12.0 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) PPR PF01535.15 gi|118431143|ref|NP_147398.2| - 0.14 12.2 0.1 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 PPR repeat SWIM PF04434.12 gi|14600874|ref|NP_147399.1| - 1.3e-05 24.5 0.1 2.6e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 SWIM zinc finger Fn3-like PF14310.1 gi|14600874|ref|NP_147399.1| - 0.021 14.7 0.0 0.061 13.2 0.0 1.7 2 0 0 2 2 2 0 Fibronectin type III-like domain Rib_5-P_isom_A PF06026.9 gi|14600875|ref|NP_147400.1| - 1.4e-46 158.0 0.0 1.6e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TENA_THI-4 PF03070.11 gi|118431144|ref|NP_147403.2| - 3.9e-59 199.9 0.5 4.6e-59 199.6 0.4 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.1 gi|118431144|ref|NP_147403.2| - 0.086 13.0 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 Iron-containing redox enzyme MFS_1 PF07690.11 gi|14600879|ref|NP_147404.1| - 2.9e-26 92.0 57.2 1.7e-19 69.7 22.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3930 PF13067.1 gi|14600879|ref|NP_147404.1| - 0.21 11.4 0.3 0.49 10.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3930) RuvA_C PF07499.8 gi|14600879|ref|NP_147404.1| - 0.6 10.3 3.8 13 6.0 0.0 3.0 3 0 0 3 3 3 0 RuvA, C-terminal domain Ldh_1_N PF00056.18 gi|118431145|ref|NP_147405.2| - 6.4e-39 132.9 0.2 9.3e-39 132.4 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|118431145|ref|NP_147405.2| - 2e-25 89.5 0.0 4e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|118431145|ref|NP_147405.2| - 0.00024 20.4 1.5 0.0028 17.0 0.1 2.8 2 1 1 3 3 3 1 Family 4 glycosyl hydrolase Shikimate_DH PF01488.15 gi|118431145|ref|NP_147405.2| - 0.011 15.7 0.2 0.025 14.6 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase KR PF08659.5 gi|118431145|ref|NP_147405.2| - 0.026 14.1 0.2 0.065 12.8 0.0 1.7 2 0 0 2 2 2 0 KR domain adh_short PF00106.20 gi|118431145|ref|NP_147405.2| - 0.027 14.3 0.3 0.1 12.4 0.2 2.0 1 1 0 1 1 1 0 short chain dehydrogenase Pyr_redox_3 PF13738.1 gi|118431145|ref|NP_147405.2| - 0.058 13.4 0.9 0.12 12.3 0.5 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|118431145|ref|NP_147405.2| - 0.069 13.5 0.7 0.74 10.2 0.0 2.5 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|118431145|ref|NP_147405.2| - 0.32 10.3 2.0 4.6 6.5 1.4 2.2 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V_ATPase_I PF01496.14 gi|118431146|ref|NP_147406.2| - 2.6e-51 174.4 0.2 9.9e-28 96.4 0.0 2.1 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family Aminotran_1_2 PF00155.16 gi|118431147|ref|NP_147407.2| - 5.6e-50 170.3 0.0 6.4e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|118431147|ref|NP_147407.2| - 2.5e-06 26.0 0.0 3.5e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|118431147|ref|NP_147407.2| - 0.032 13.2 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA_bind PF01588.15 gi|118431148|ref|NP_147408.2| - 1.3e-31 108.2 0.1 1.5e-31 108.0 0.1 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Pantoate_transf PF02548.10 gi|14600884|ref|NP_147409.1| - 3.1e-105 350.9 0.0 3.5e-105 350.8 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|14600884|ref|NP_147409.1| - 1.1e-10 41.1 1.5 1.5e-10 40.6 0.4 1.6 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase ApbA_C PF08546.6 gi|118431149|ref|NP_147410.2| - 5.1e-27 94.3 0.0 7.4e-27 93.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|118431149|ref|NP_147410.2| - 2.1e-14 53.2 0.0 3.5e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 4HBT_2 PF13279.1 gi|118431150|ref|NP_147412.2| - 1.3e-05 25.6 0.3 1.5e-05 25.4 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|118431150|ref|NP_147412.2| - 2e-05 24.6 0.2 2.8e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF211 PF02680.9 gi|118431151|ref|NP_147413.2| - 8.7e-36 121.6 1.7 9.4e-36 121.5 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Prok-JAB PF14464.1 gi|118431152|ref|NP_147414.2| - 3.9e-15 55.2 0.0 4.8e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|118431152|ref|NP_147414.2| - 7e-08 32.2 0.0 9.2e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Metallophos_2 PF12850.2 gi|118431153|ref|NP_147415.2| - 3.2e-27 95.2 0.0 3.7e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|118431153|ref|NP_147415.2| - 1.6e-07 30.9 0.1 3.7e-05 23.2 0.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|118431153|ref|NP_147415.2| - 0.037 13.1 0.0 0.15 11.2 0.0 1.8 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DUF2283 PF10049.4 gi|118431154|ref|NP_147416.2| - 5.7e-10 38.9 0.5 6.8e-10 38.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) HAD PF12710.2 gi|14600892|ref|NP_147417.1| - 3.1e-14 53.5 0.0 4.4e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|14600892|ref|NP_147417.1| - 1.1e-11 45.5 0.0 6.9e-09 36.4 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|14600892|ref|NP_147417.1| - 1e-08 35.6 0.0 3.6e-08 33.8 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|14600892|ref|NP_147417.1| - 0.00046 19.8 0.0 0.0012 18.5 0.0 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|14600892|ref|NP_147417.1| - 0.0023 17.1 0.0 0.029 13.5 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase tRNA_int_endo PF01974.12 gi|14600893|ref|NP_147418.1| - 0.00063 19.5 0.0 0.00097 18.8 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain IF-2B PF01008.12 gi|14600894|ref|NP_147419.1| - 8.8e-81 270.9 0.0 1e-80 270.7 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Glyoxalase PF00903.20 gi|14600895|ref|NP_147420.1| - 4.3e-26 91.3 0.1 4.3e-14 52.5 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|14600895|ref|NP_147420.1| - 7.3e-16 58.7 0.1 1.4e-10 41.7 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|14600895|ref|NP_147420.1| - 7.7e-06 25.8 0.0 0.00083 19.3 0.0 2.5 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Iso_dh PF00180.15 gi|118431155|ref|NP_147421.2| - 8.2e-97 324.2 0.0 9.6e-97 324.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase T2SE PF00437.15 gi|118431156|ref|NP_147426.2| - 4.6e-40 137.2 0.0 6.8e-40 136.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|118431156|ref|NP_147426.2| - 7.7e-05 23.0 0.0 0.00038 20.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|118431156|ref|NP_147426.2| - 0.00027 21.7 0.0 0.001 19.8 0.0 2.0 3 0 0 3 3 1 1 AAA domain ABC_tran PF00005.22 gi|118431156|ref|NP_147426.2| - 0.00082 19.6 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|118431156|ref|NP_147426.2| - 0.0015 18.6 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|118431156|ref|NP_147426.2| - 0.002 17.7 0.0 0.0058 16.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|118431156|ref|NP_147426.2| - 0.0023 17.9 0.0 0.0052 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|118431156|ref|NP_147426.2| - 0.0025 17.3 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|118431156|ref|NP_147426.2| - 0.0031 17.5 0.1 0.0083 16.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|118431156|ref|NP_147426.2| - 0.0033 17.1 0.0 0.012 15.3 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|118431156|ref|NP_147426.2| - 0.0039 17.5 0.0 0.008 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA12 PF10443.4 gi|118431156|ref|NP_147426.2| - 0.0044 15.5 0.0 0.0064 15.0 0.0 1.1 1 0 0 1 1 1 1 RNA12 protein NACHT PF05729.7 gi|118431156|ref|NP_147426.2| - 0.0092 15.6 0.1 0.02 14.5 0.1 1.6 1 0 0 1 1 1 1 NACHT domain cobW PF02492.14 gi|118431156|ref|NP_147426.2| - 0.01 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|118431156|ref|NP_147426.2| - 0.013 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|118431156|ref|NP_147426.2| - 0.017 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|118431156|ref|NP_147426.2| - 0.02 13.9 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.16 gi|118431156|ref|NP_147426.2| - 0.023 13.8 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|118431156|ref|NP_147426.2| - 0.024 14.3 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|118431156|ref|NP_147426.2| - 0.032 13.6 0.0 0.081 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|118431156|ref|NP_147426.2| - 0.047 13.6 0.0 0.069 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|118431156|ref|NP_147426.2| - 0.061 13.8 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|118431156|ref|NP_147426.2| - 0.062 12.7 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|118431156|ref|NP_147426.2| - 0.066 13.1 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|118431156|ref|NP_147426.2| - 0.084 12.2 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|118431156|ref|NP_147426.2| - 0.085 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|118431156|ref|NP_147426.2| - 0.2 11.3 0.0 0.42 10.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|118431156|ref|NP_147426.2| - 0.26 10.8 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Glyco_hydro_49 PF03718.8 gi|14600902|ref|NP_147427.1| - 0.0022 16.1 0.1 0.0023 16.1 0.1 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 49 DUF3592 PF12158.3 gi|14600902|ref|NP_147427.1| - 0.025 14.3 0.1 0.03 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) DS PF01916.12 gi|118431157|ref|NP_147428.2| - 6.3e-67 225.8 0.0 7.1e-67 225.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ParBc PF02195.13 gi|118431158|ref|NP_147431.2| - 5e-11 42.5 0.0 6.3e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain TP6A_N PF04406.9 gi|118431159|ref|NP_147432.2| - 5.8e-24 83.5 0.4 9.8e-24 82.8 0.3 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|118431159|ref|NP_147432.2| - 0.036 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HAD_2 PF13419.1 gi|118431159|ref|NP_147432.2| - 0.089 13.0 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Topo-VIb_trans PF09239.6 gi|118431160|ref|NP_147433.2| - 5.8e-64 214.4 0.0 9.9e-64 213.6 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|118431160|ref|NP_147433.2| - 4.3e-11 42.5 0.0 8.6e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|118431160|ref|NP_147433.2| - 1.9e-10 40.5 0.0 4e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|118431160|ref|NP_147433.2| - 0.0013 17.3 0.0 0.0026 16.3 0.0 1.4 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) IMS_C PF11799.3 gi|118431160|ref|NP_147433.2| - 0.017 15.0 0.0 1.9 8.4 0.0 2.8 3 0 0 3 3 3 0 impB/mucB/samB family C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|118431161|ref|NP_147434.2| - 1.1e-135 453.0 0.0 1.3e-135 452.7 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|118431161|ref|NP_147434.2| - 2.5e-31 108.0 0.0 5e-31 107.0 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Colicin_V PF02674.11 gi|118431162|ref|YP_874839.1| - 0.13 12.0 8.2 0.16 11.8 5.7 1.0 1 0 0 1 1 1 0 Colicin V production protein DUF485 PF04341.7 gi|118431162|ref|YP_874839.1| - 0.26 11.0 4.6 0.29 10.8 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF485 YjgP_YjgQ PF03739.9 gi|118431162|ref|YP_874839.1| - 0.41 9.3 4.6 0.43 9.2 3.2 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family MerE PF05052.7 gi|118431162|ref|YP_874839.1| - 0.64 10.0 5.7 0.78 9.7 3.9 1.3 1 1 0 1 1 1 0 MerE protein PMT PF02366.13 gi|118431162|ref|YP_874839.1| - 0.64 9.3 6.1 0.69 9.2 4.2 1.1 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1129 PF06570.6 gi|118431162|ref|YP_874839.1| - 0.95 8.7 3.7 1.1 8.5 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF805 PF05656.9 gi|118431162|ref|YP_874839.1| - 1.9 8.3 7.2 2 8.2 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF4231 PF14015.1 gi|118431162|ref|YP_874839.1| - 2.7 7.9 7.7 3.2 7.7 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF1886 PF09171.5 gi|118431163|ref|NP_147435.2| - 6.4e-70 234.9 0.0 7.5e-70 234.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) DUF4117 PF13491.1 gi|118431163|ref|NP_147435.2| - 0.042 13.2 0.1 0.065 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) AAA_17 PF13207.1 gi|118431163|ref|NP_147435.2| - 0.057 14.2 0.0 0.17 12.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain MR_MLE_C PF13378.1 gi|118431164|ref|NP_147436.2| - 1.6e-13 50.6 0.0 2.9e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|118431164|ref|NP_147436.2| - 4.9e-12 46.2 0.1 1.1e-11 45.0 0.1 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|118431164|ref|NP_147436.2| - 4.3e-11 42.8 0.0 7.4e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TrkH PF02386.11 gi|118431165|ref|NP_147437.2| - 1.9e-44 151.6 20.9 8e-43 146.3 9.7 2.4 2 1 0 2 2 2 2 Cation transport protein CbtB PF09489.5 gi|118431165|ref|NP_147437.2| - 0.36 10.7 2.0 1.4 8.8 0.1 3.2 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Form-deh_trans PF09163.6 gi|118431165|ref|NP_147437.2| - 0.44 10.0 8.0 0.051 13.0 0.9 2.9 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane CBS PF00571.23 gi|118431166|ref|NP_147438.2| - 0.13 12.1 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 CBS domain Penicillinase_R PF03965.11 gi|14600914|ref|NP_147439.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor RelB PF04221.7 gi|118431167|ref|YP_874840.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 RelB antitoxin HrpJ PF07201.6 gi|14600916|ref|NP_147441.1| - 0.053 13.5 5.5 0.058 13.4 3.8 1.1 1 0 0 1 1 1 0 HrpJ-like domain TarH PF02203.10 gi|14600916|ref|NP_147441.1| - 0.25 11.1 1.3 0.31 10.8 0.9 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue HTH_IclR PF09339.5 gi|118431168|ref|YP_874841.1| - 1.1e-11 44.1 0.0 1.5e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|118431168|ref|YP_874841.1| - 6e-07 29.0 0.0 8e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|118431168|ref|YP_874841.1| - 3.6e-05 23.0 0.1 5.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|118431168|ref|YP_874841.1| - 0.00016 21.4 0.0 0.00018 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|118431168|ref|YP_874841.1| - 0.00021 21.3 0.0 0.00023 21.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|118431168|ref|YP_874841.1| - 0.00027 21.1 0.0 0.00034 20.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|118431168|ref|YP_874841.1| - 0.0024 17.4 0.0 0.0062 16.1 0.0 1.7 1 1 1 2 2 2 1 Homeodomain-like domain TrmB PF01978.14 gi|118431168|ref|YP_874841.1| - 0.0028 17.2 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|118431168|ref|YP_874841.1| - 0.0032 16.7 0.1 0.0062 15.8 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 DUF4423 PF14394.1 gi|118431168|ref|YP_874841.1| - 0.0091 15.5 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|118431168|ref|YP_874841.1| - 0.013 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|118431168|ref|YP_874841.1| - 0.023 14.0 0.0 0.064 12.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Mrr_N PF14338.1 gi|118431168|ref|YP_874841.1| - 0.035 14.1 0.1 0.33 11.0 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_10 PF04967.7 gi|118431168|ref|YP_874841.1| - 0.039 13.5 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.17 gi|118431168|ref|YP_874841.1| - 0.043 13.5 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Ribosomal_S19e PF01090.14 gi|118431168|ref|YP_874841.1| - 0.067 12.6 0.1 0.096 12.1 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein S19e Fe_dep_repress PF01325.14 gi|118431168|ref|YP_874841.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|118431168|ref|YP_874841.1| - 0.14 11.8 0.2 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 HTH domain MotA_activ PF09114.5 gi|14600918|ref|NP_147443.1| - 0.00073 19.2 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 Transcription factor MotA, activation domain HTH_45 PF14947.1 gi|14600918|ref|NP_147443.1| - 0.00076 19.2 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|14600918|ref|NP_147443.1| - 0.00078 18.7 0.0 0.0034 16.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|14600918|ref|NP_147443.1| - 0.0016 18.1 0.3 0.31 10.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|14600918|ref|NP_147443.1| - 0.0076 16.0 0.1 0.12 12.1 0.0 2.5 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|14600918|ref|NP_147443.1| - 0.0096 15.9 0.0 0.026 14.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|14600918|ref|NP_147443.1| - 0.018 15.1 0.1 4.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator Mrr_N PF14338.1 gi|14600918|ref|NP_147443.1| - 0.042 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain MarR_2 PF12802.2 gi|14600918|ref|NP_147443.1| - 0.059 13.0 0.2 0.44 10.2 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.1 gi|14600918|ref|NP_147443.1| - 0.063 12.9 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.7 gi|14600918|ref|NP_147443.1| - 0.073 13.2 0.2 0.26 11.4 0.1 1.9 2 0 0 2 2 2 0 FaeA-like protein HemN_C PF06969.11 gi|14600918|ref|NP_147443.1| - 0.089 12.8 0.0 0.38 10.8 0.0 2.1 2 0 0 2 2 2 0 HemN C-terminal domain HTH_5 PF01022.15 gi|14600918|ref|NP_147443.1| - 0.15 11.7 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|118431169|ref|YP_874842.1| - 0.0031 17.2 0.0 0.0038 16.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|118431169|ref|YP_874842.1| - 0.016 15.5 0.1 0.039 14.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|118431169|ref|YP_874842.1| - 0.057 13.2 0.1 0.099 12.4 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2834 PF11196.3 gi|118431171|ref|YP_874844.1| - 0.32 11.1 6.0 0.44 10.7 4.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2834) Wzt_C PF14524.1 gi|118431172|ref|NP_147446.2| - 0.0079 15.8 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Wzt C-terminal domain Glyco_tran_WbsX PF14307.1 gi|14600923|ref|NP_147448.1| - 1.8e-05 24.1 0.3 0.011 14.9 0.2 3.0 3 0 0 3 3 3 2 Glycosyltransferase WbsX Glyco_hydro_71 PF03659.9 gi|14600923|ref|NP_147448.1| - 0.0016 16.9 0.8 0.011 14.1 0.4 2.1 2 1 0 2 2 2 1 Glycosyl hydrolase family 71 DUF2104 PF09877.4 gi|118431173|ref|YP_874845.1| - 0.049 13.5 0.1 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2104) EF-hand_5 PF13202.1 gi|14600928|ref|NP_147453.1| - 0.26 10.6 5.5 0.46 9.9 0.2 3.1 3 0 0 3 3 3 0 EF hand EF-hand_1 PF00036.27 gi|14600928|ref|NP_147453.1| - 0.57 9.6 3.1 15 5.1 0.1 3.2 3 0 0 3 3 3 0 EF hand Acyl-CoA_dh_1 PF00441.19 gi|14600935|ref|NP_147460.1| - 1e-31 110.0 5.6 2e-31 109.1 3.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|14600935|ref|NP_147460.1| - 1.5e-12 46.8 0.3 3.2e-12 45.7 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|14600935|ref|NP_147460.1| - 1.3e-10 41.6 3.3 1.3e-10 41.6 2.3 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain DUF1471 PF07338.8 gi|14600935|ref|NP_147460.1| - 0.035 13.7 0.0 0.088 12.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Acyl-CoA_dh_N PF02771.11 gi|14600935|ref|NP_147460.1| - 0.062 13.8 0.2 0.27 11.7 0.0 2.1 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain Sod_Fe_C PF02777.13 gi|14600936|ref|NP_147461.1| - 4.6e-40 135.7 0.1 7.9e-40 134.9 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|14600936|ref|NP_147461.1| - 2.5e-29 101.3 2.9 2.5e-29 101.3 2.0 2.0 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Holin_LLH PF09682.5 gi|14600937|ref|NP_147462.1| - 0.14 12.2 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Phage holin protein (Holin_LLH) KaiC PF06745.8 gi|118431177|ref|NP_147464.2| - 1.6e-48 164.7 0.0 3.5e-37 127.7 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|118431177|ref|NP_147464.2| - 2e-10 40.4 0.0 3.2e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|118431177|ref|NP_147464.2| - 7.4e-06 24.5 0.1 0.00052 18.4 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|118431177|ref|NP_147464.2| - 1.5e-05 24.4 0.0 2.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein LAGLIDADG_3 PF14528.1 gi|118431177|ref|NP_147464.2| - 0.0016 18.6 0.2 0.0052 16.9 0.2 1.9 1 0 0 1 1 1 1 LAGLIDADG-like domain AAA_19 PF13245.1 gi|118431177|ref|NP_147464.2| - 0.0016 18.1 0.0 0.0065 16.1 0.0 2.1 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|118431177|ref|NP_147464.2| - 0.0051 15.8 0.0 0.0086 15.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|118431177|ref|NP_147464.2| - 0.0058 16.7 0.0 0.014 15.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|118431177|ref|NP_147464.2| - 0.0065 15.9 0.0 0.0094 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain RecA PF00154.16 gi|118431177|ref|NP_147464.2| - 0.0075 15.3 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.6 gi|118431177|ref|NP_147464.2| - 0.034 13.0 0.0 0.055 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad51 Sigma54_activat PF00158.21 gi|118431177|ref|NP_147464.2| - 0.072 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|118431177|ref|NP_147464.2| - 0.15 11.5 0.1 0.26 10.7 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.11 gi|118431177|ref|NP_147464.2| - 0.18 11.0 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_31 PF13614.1 gi|118431177|ref|NP_147464.2| - 0.21 11.4 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NMD3 PF04981.8 gi|118431178|ref|NP_147465.2| - 2.2e-48 164.4 0.0 2.7e-48 164.1 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|118431178|ref|NP_147465.2| - 0.023 14.4 4.9 0.47 10.3 1.8 2.7 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|118431178|ref|NP_147465.2| - 0.032 14.0 0.8 0.19 11.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|118431178|ref|NP_147465.2| - 0.3 10.6 5.9 1.9 8.1 0.6 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|118431178|ref|NP_147465.2| - 0.3 10.3 9.6 6.5 6.0 4.8 3.2 2 1 1 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431178|ref|NP_147465.2| - 1.7 8.3 6.7 15 5.3 0.1 3.0 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|118431178|ref|NP_147465.2| - 7.1 6.3 6.1 51 3.5 2.3 2.8 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|118431178|ref|NP_147465.2| - 10 6.5 7.9 2e+02 2.3 0.0 3.1 2 1 0 2 2 2 0 Restriction alleviation protein Lar eIF-1a PF01176.14 gi|118431179|ref|YP_874848.1| - 5.6e-22 76.9 0.3 8e-22 76.4 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|14600941|ref|NP_147467.1| - 8.7e-63 211.0 0.0 1.2e-62 210.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|14600941|ref|NP_147467.1| - 7.2e-08 31.7 0.2 3.3e-07 29.5 0.1 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|14600941|ref|NP_147467.1| - 1.5e-06 28.1 1.5 0.0013 18.5 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|14600941|ref|NP_147467.1| - 0.0021 17.2 0.0 0.004 16.3 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain KH_1 PF00013.24 gi|118431180|ref|NP_147468.2| - 1e-14 53.9 7.9 1.3e-07 31.1 0.4 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|118431180|ref|NP_147468.2| - 3.6e-10 39.2 2.1 0.00011 21.8 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|118431180|ref|NP_147468.2| - 0.0062 16.0 5.6 0.68 9.5 0.3 2.7 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|118431180|ref|NP_147468.2| - 0.0077 15.8 0.7 0.5 10.0 0.0 2.6 2 0 0 2 2 2 1 KH domain NAD_binding_2 PF03446.10 gi|118431181|ref|NP_147470.2| - 2.2e-23 82.8 0.1 3.4e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|118431181|ref|NP_147470.2| - 4e-14 52.7 0.1 9.8e-14 51.4 0.0 1.7 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|118431181|ref|NP_147470.2| - 3.6e-10 40.1 0.4 8.2e-10 38.9 0.1 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|118431181|ref|NP_147470.2| - 3.6e-08 33.6 0.1 1.6e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|118431181|ref|NP_147470.2| - 8.6e-08 32.0 0.2 1.3e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|118431181|ref|NP_147470.2| - 8.1e-07 28.3 0.1 1.2e-06 27.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|118431181|ref|NP_147470.2| - 1.7e-05 24.8 0.1 6.8e-05 22.8 0.1 2.0 1 1 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|118431181|ref|NP_147470.2| - 2.9e-05 23.3 0.0 4.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|118431181|ref|NP_147470.2| - 6.9e-05 22.6 0.1 0.00013 21.7 0.1 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|118431181|ref|NP_147470.2| - 0.00013 20.9 4.9 0.00032 19.7 1.0 2.2 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|118431181|ref|NP_147470.2| - 0.00026 21.1 0.1 0.0005 20.2 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|118431181|ref|NP_147470.2| - 0.00032 20.1 0.1 0.00051 19.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|118431181|ref|NP_147470.2| - 0.00055 19.9 0.1 0.0022 18.0 0.1 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.1 gi|118431181|ref|NP_147470.2| - 0.00063 19.8 1.4 0.0016 18.4 1.0 1.7 2 0 0 2 2 1 1 NADH(P)-binding adh_short PF00106.20 gi|118431181|ref|NP_147470.2| - 0.0007 19.5 1.8 0.0013 18.6 1.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|118431181|ref|NP_147470.2| - 0.00099 19.6 0.1 0.0021 18.5 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|118431181|ref|NP_147470.2| - 0.0025 17.1 0.1 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox_2 PF07992.9 gi|118431181|ref|NP_147470.2| - 0.0069 16.2 0.8 0.017 14.9 0.5 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|118431181|ref|NP_147470.2| - 0.015 14.7 0.1 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|118431181|ref|NP_147470.2| - 0.023 14.3 0.5 0.041 13.5 0.4 1.4 1 0 0 1 1 1 0 KR domain Rossmann-like PF10727.4 gi|118431181|ref|NP_147470.2| - 0.027 14.2 0.3 0.06 13.0 0.2 1.5 1 0 0 1 1 1 0 Rossmann-like domain GIDA PF01134.17 gi|118431181|ref|NP_147470.2| - 0.031 13.1 0.2 0.041 12.7 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A ThiF PF00899.16 gi|118431181|ref|NP_147470.2| - 0.032 14.0 0.8 0.081 12.7 0.6 1.7 1 0 0 1 1 1 0 ThiF family FAD_binding_3 PF01494.14 gi|118431181|ref|NP_147470.2| - 0.038 13.0 0.1 0.062 12.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|118431181|ref|NP_147470.2| - 0.049 13.0 0.0 0.083 12.2 0.0 1.4 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|118431181|ref|NP_147470.2| - 0.064 12.3 0.0 0.16 11.0 0.0 1.6 1 0 0 1 1 1 0 Thi4 family AAA_30 PF13604.1 gi|118431181|ref|NP_147470.2| - 0.084 12.4 0.3 0.2 11.2 0.1 1.7 2 0 0 2 2 1 0 AAA domain AlaDh_PNT_C PF01262.16 gi|118431181|ref|NP_147470.2| - 0.12 11.9 0.4 0.45 10.0 0.1 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Nitro_FeMo-Co PF02579.12 gi|118431181|ref|NP_147470.2| - 0.14 12.2 0.1 0.56 10.3 0.0 2.0 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Glyco_trans_4_4 PF13579.1 gi|118431181|ref|NP_147470.2| - 0.27 11.3 5.7 1.2 9.2 4.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Pyr_redox_2 PF07992.9 gi|118431182|ref|NP_147471.2| - 0.015 15.2 0.1 0.026 14.4 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|118431182|ref|NP_147471.2| - 0.029 14.3 0.2 0.075 13.0 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|118431182|ref|NP_147471.2| - 0.052 12.0 0.4 0.077 11.4 0.3 1.2 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.17 gi|118431182|ref|NP_147471.2| - 0.057 12.2 0.4 0.088 11.6 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|118431182|ref|NP_147471.2| - 0.059 12.4 1.8 0.093 11.7 1.3 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase HEPN PF05168.9 gi|118431183|ref|NP_147472.2| - 1.1e-31 109.1 0.4 1.4e-31 108.8 0.3 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|118431184|ref|NP_147473.2| - 1.4e-11 44.5 0.1 1.7e-11 44.2 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF3650 PF12368.3 gi|118431184|ref|NP_147473.2| - 0.2 11.1 1.1 0.21 11.1 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) Epimerase PF01370.16 gi|118431186|ref|YP_874849.1| - 4.5e-12 45.8 0.0 6.3e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|118431186|ref|YP_874849.1| - 3.2e-06 26.2 0.0 4.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|118431186|ref|YP_874849.1| - 3.2e-05 24.0 0.0 4.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|118431186|ref|YP_874849.1| - 0.0017 17.0 0.0 0.0031 16.2 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|118431186|ref|YP_874849.1| - 0.28 10.3 0.4 0.6 9.3 0.3 1.5 1 1 0 1 1 1 0 NmrA-like family Pyr_redox PF00070.22 gi|118431186|ref|YP_874849.1| - 0.34 11.3 2.3 0.71 10.3 1.6 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|118431186|ref|YP_874849.1| - 0.44 9.8 1.8 0.69 9.2 1.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Hydrolase_3 PF08282.7 gi|14600951|ref|NP_147477.1| - 5.9e-20 71.9 0.0 3.2e-12 46.5 0.0 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|14600951|ref|NP_147477.1| - 5.2e-09 36.5 0.4 3.2e-06 27.4 0.0 3.0 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|14600951|ref|NP_147477.1| - 1.4e-06 28.8 0.1 0.027 14.8 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|14600951|ref|NP_147477.1| - 0.051 12.8 0.0 0.11 11.7 0.0 1.6 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Spermine_synth PF01564.12 gi|118431187|ref|NP_147478.2| - 1.2e-66 224.1 0.0 1.5e-66 223.8 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|118431187|ref|NP_147478.2| - 5.3e-08 33.4 0.0 8.7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|118431187|ref|NP_147478.2| - 3.2e-06 27.1 0.0 5.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|118431187|ref|NP_147478.2| - 1.3e-05 24.8 0.0 2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|118431187|ref|NP_147478.2| - 2.8e-05 24.5 0.0 8.5e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|118431187|ref|NP_147478.2| - 0.0028 18.0 0.0 0.0042 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118431187|ref|NP_147478.2| - 0.0066 15.8 0.0 0.0098 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|118431187|ref|NP_147478.2| - 0.03 13.7 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|118431187|ref|NP_147478.2| - 0.083 13.3 0.0 0.22 12.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain bact-PGI_C PF10432.4 gi|118431188|ref|NP_147479.2| - 1.8e-37 128.3 0.0 2.6e-37 127.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region PHZA_PHZB PF03284.8 gi|118431188|ref|NP_147479.2| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Phenazine biosynthesis protein A/B DUF373 PF04123.8 gi|118431189|ref|NP_147481.2| - 3.7e-89 299.1 13.9 4.6e-89 298.8 9.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3925 PF13063.1 gi|118431189|ref|NP_147481.2| - 4.3 7.4 7.5 0.68 10.0 2.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3925) SRP19 PF01922.12 gi|14600956|ref|NP_147482.1| - 5e-23 81.5 0.0 6.1e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Thioredoxin_3 PF13192.1 gi|14600959|ref|NP_147485.1| - 8.4e-33 112.0 0.0 5.7e-17 61.2 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.15 gi|14600959|ref|NP_147485.1| - 0.0013 18.4 0.0 0.25 11.0 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Glutaredoxin PF00462.19 gi|14600959|ref|NP_147485.1| - 0.0035 17.3 7.6 0.53 10.3 0.4 4.6 2 2 2 4 4 4 2 Glutaredoxin DUF2312 PF10073.4 gi|14600959|ref|NP_147485.1| - 0.0064 15.8 0.1 0.014 14.7 0.1 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2312) TrbC_Ftype PF09673.5 gi|14600959|ref|NP_147485.1| - 0.0089 15.6 0.0 1.9 8.1 0.0 2.6 2 1 0 2 2 2 2 Type-F conjugative transfer system pilin assembly protein Thioredoxin_4 PF13462.1 gi|14600959|ref|NP_147485.1| - 0.016 15.2 0.1 0.34 10.8 0.0 2.7 3 0 0 3 3 3 0 Thioredoxin DUF836 PF05768.9 gi|14600959|ref|NP_147485.1| - 0.045 14.0 0.0 0.36 11.1 0.0 2.2 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.1 gi|14600959|ref|NP_147485.1| - 0.095 12.2 0.0 1.1 8.8 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin HTH_3 PF01381.17 gi|14600960|ref|NP_147486.1| - 0.0028 17.4 0.1 0.0065 16.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|14600960|ref|NP_147486.1| - 0.021 14.8 0.1 0.045 13.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|14600960|ref|NP_147486.1| - 0.041 13.3 0.0 1.2 8.5 0.0 2.7 2 1 1 3 3 3 0 CENP-B N-terminal DNA-binding domain Metallophos PF00149.23 gi|14600961|ref|NP_147487.1| - 2.9e-15 56.2 0.0 3.7e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|14600961|ref|NP_147487.1| - 0.00017 21.4 0.0 0.00019 21.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HTH_19 PF12844.2 gi|14600962|ref|NP_147488.1| - 8.7e-11 41.7 0.4 2.6e-10 40.1 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|14600962|ref|NP_147488.1| - 5.9e-09 35.6 1.3 2.7e-08 33.5 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|14600962|ref|NP_147488.1| - 0.00022 21.3 0.0 0.00072 19.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain NTPase_1 PF03266.10 gi|118431192|ref|NP_147489.2| - 4.6e-51 172.8 0.0 5.3e-51 172.6 0.0 1.1 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|118431192|ref|NP_147489.2| - 5.5e-08 32.2 0.0 3.2e-07 29.7 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.1 gi|118431192|ref|NP_147489.2| - 3.7e-07 30.9 0.0 5.5e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|118431192|ref|NP_147489.2| - 1.5e-06 27.8 0.2 0.0073 15.7 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain ArgK PF03308.11 gi|118431192|ref|NP_147489.2| - 4.8e-06 25.5 0.2 1.4e-05 24.0 0.0 1.7 1 1 1 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|118431192|ref|NP_147489.2| - 6.3e-06 26.3 0.0 2.8e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118431192|ref|NP_147489.2| - 8.2e-05 22.8 0.0 0.00045 20.4 0.0 2.1 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|118431192|ref|NP_147489.2| - 0.00013 21.6 0.2 0.00033 20.3 0.1 1.9 2 1 0 2 2 2 1 Part of AAA domain AAA_5 PF07728.9 gi|118431192|ref|NP_147489.2| - 0.00015 21.5 0.8 0.01 15.5 0.1 3.0 2 1 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|118431192|ref|NP_147489.2| - 0.00022 21.1 0.1 0.00039 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431192|ref|NP_147489.2| - 0.00022 21.2 0.4 0.00042 20.3 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|118431192|ref|NP_147489.2| - 0.00024 20.7 0.1 0.0014 18.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118431192|ref|NP_147489.2| - 0.00049 20.3 0.0 0.00079 19.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|118431192|ref|NP_147489.2| - 0.0013 18.6 0.0 0.032 14.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|118431192|ref|NP_147489.2| - 0.0013 18.2 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.12 gi|118431192|ref|NP_147489.2| - 0.0026 17.1 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|118431192|ref|NP_147489.2| - 0.0028 17.3 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.1 gi|118431192|ref|NP_147489.2| - 0.0034 17.0 0.0 0.05 13.1 0.0 2.1 1 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|118431192|ref|NP_147489.2| - 0.0035 17.0 0.0 0.0082 15.8 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|118431192|ref|NP_147489.2| - 0.0039 16.6 0.2 0.0081 15.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|118431192|ref|NP_147489.2| - 0.0041 16.3 0.0 0.0093 15.1 0.0 1.6 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|118431192|ref|NP_147489.2| - 0.0075 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Viral_helicase1 PF01443.13 gi|118431192|ref|NP_147489.2| - 0.0084 15.6 0.1 0.15 11.5 0.0 2.3 2 1 0 2 2 2 1 Viral (Superfamily 1) RNA helicase T2SE PF00437.15 gi|118431192|ref|NP_147489.2| - 0.0099 14.8 0.0 0.016 14.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|118431192|ref|NP_147489.2| - 0.011 15.8 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.1 gi|118431192|ref|NP_147489.2| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|118431192|ref|NP_147489.2| - 0.015 15.4 0.0 0.035 14.2 0.0 1.6 2 0 0 2 2 1 0 RNA helicase KaiC PF06745.8 gi|118431192|ref|NP_147489.2| - 0.021 13.9 0.0 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 KaiC APS_kinase PF01583.15 gi|118431192|ref|NP_147489.2| - 0.028 14.0 0.0 0.21 11.2 0.0 2.2 2 1 1 3 3 3 0 Adenylylsulphate kinase Rad17 PF03215.10 gi|118431192|ref|NP_147489.2| - 0.048 12.3 0.0 0.22 10.1 0.0 1.7 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein cobW PF02492.14 gi|118431192|ref|NP_147489.2| - 0.048 13.1 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|118431192|ref|NP_147489.2| - 0.073 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|118431192|ref|NP_147489.2| - 0.076 12.1 0.1 0.2 10.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin CbiA PF01656.18 gi|118431192|ref|NP_147489.2| - 0.08 12.3 0.1 9.7 5.5 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain PPV_E1_C PF00519.12 gi|118431192|ref|NP_147489.2| - 0.09 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase ABC_tran PF00005.22 gi|118431192|ref|NP_147489.2| - 0.096 12.9 0.1 0.24 11.6 0.0 1.7 2 0 0 2 2 1 0 ABC transporter Miro PF08477.8 gi|118431192|ref|NP_147489.2| - 0.12 12.8 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein Herpes_Helicase PF02689.9 gi|118431192|ref|NP_147489.2| - 0.12 10.0 0.0 4.8 4.7 0.0 2.0 2 0 0 2 2 2 0 Helicase Op_neuropeptide PF08035.6 gi|118431192|ref|NP_147489.2| - 0.13 11.8 0.1 16 5.1 0.0 3.1 3 0 0 3 3 3 0 Opioids neuropeptide DUF2075 PF09848.4 gi|118431192|ref|NP_147489.2| - 0.13 11.1 0.0 0.26 10.1 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.17 gi|118431192|ref|NP_147489.2| - 0.16 11.3 0.0 1.7 8.0 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_24 PF13479.1 gi|118431192|ref|NP_147489.2| - 0.17 11.4 0.0 1.1 8.7 0.0 2.1 2 1 1 3 3 3 0 AAA domain TRM PF02005.11 gi|118431193|ref|NP_147490.2| - 5.6e-81 272.3 0.0 7.1e-81 272.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|118431193|ref|NP_147490.2| - 0.012 15.0 0.1 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF2067 PF09840.4 gi|118431193|ref|NP_147490.2| - 0.028 13.9 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) Met_10 PF02475.11 gi|118431193|ref|NP_147490.2| - 0.04 13.4 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein RNA_pol_Rpc34 PF05158.7 gi|118431194|ref|NP_147491.2| - 5.4e-06 25.8 0.2 0.00093 18.4 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.17 gi|118431194|ref|NP_147491.2| - 8e-06 25.4 0.5 1.3e-05 24.8 0.4 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|118431194|ref|NP_147491.2| - 0.00046 19.9 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|118431194|ref|NP_147491.2| - 0.019 14.6 0.4 0.026 14.1 0.3 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|118431194|ref|NP_147491.2| - 0.082 13.2 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain GPP34 PF05719.6 gi|118431194|ref|NP_147491.2| - 0.15 12.1 0.1 0.19 11.8 0.1 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) CBS PF00571.23 gi|118431195|ref|NP_147492.2| - 7.6e-68 224.0 30.3 1.2e-14 53.7 0.9 7.8 8 0 0 8 8 8 7 CBS domain Ribosomal_L9_C PF03948.9 gi|118431195|ref|NP_147492.2| - 0.00041 20.3 0.1 3.4 7.8 0.0 3.8 4 0 0 4 4 4 2 Ribosomal protein L9, C-terminal domain DUF3659 PF12396.3 gi|118431195|ref|NP_147492.2| - 2.3 7.9 7.3 22 4.8 0.1 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3659) Gar1 PF04410.9 gi|118431196|ref|NP_147493.2| - 1.6e-05 24.4 0.1 2.2e-05 23.9 0.1 1.4 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|118431197|ref|NP_147494.2| - 1.2e-13 50.6 2.1 2.7e-09 36.7 0.1 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.14 gi|118431197|ref|NP_147494.2| - 0.00035 20.5 0.1 0.0025 17.7 0.0 2.2 1 1 1 2 2 2 1 Cyclin, C-terminal domain GntR PF00392.16 gi|118431197|ref|NP_147494.2| - 0.0028 17.0 0.6 0.21 11.0 0.1 3.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|118431197|ref|NP_147494.2| - 0.014 14.8 0.4 0.24 10.9 0.0 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|118431197|ref|NP_147494.2| - 0.027 14.2 0.2 1.4 8.7 0.0 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|118431197|ref|NP_147494.2| - 0.075 13.1 1.7 1.5 9.0 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator NTPase_I-T PF01931.13 gi|118431198|ref|NP_147495.2| - 3e-31 108.3 0.1 4e-31 108.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 Ribosomal_S8e PF01201.17 gi|14600970|ref|NP_147496.1| - 6.9e-37 126.5 1.2 7.7e-37 126.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e IncA PF04156.9 gi|14600971|ref|NP_147497.1| - 5.4e-06 26.1 60.5 2.7e-05 23.8 12.3 3.2 1 1 2 3 3 3 2 IncA protein GAS PF13851.1 gi|14600971|ref|NP_147497.1| - 5.2e-05 22.5 55.5 0.00012 21.3 14.8 3.2 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding Reo_sigmaC PF04582.7 gi|14600971|ref|NP_147497.1| - 7.7e-05 22.0 2.7 0.00044 19.5 1.1 2.1 1 1 1 2 2 2 1 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|14600971|ref|NP_147497.1| - 0.00051 18.6 15.9 0.00051 18.6 11.0 2.1 1 1 1 2 2 2 1 AAA domain DUF948 PF06103.6 gi|14600971|ref|NP_147497.1| - 0.00074 19.3 0.8 0.00074 19.3 0.6 4.0 3 2 2 5 5 4 1 Bacterial protein of unknown function (DUF948) TMF_DNA_bd PF12329.3 gi|14600971|ref|NP_147497.1| - 0.0012 18.6 20.5 0.0033 17.1 3.7 6.3 1 1 6 7 7 6 2 TATA element modulatory factor 1 DNA binding Seryl_tRNA_N PF02403.17 gi|14600971|ref|NP_147497.1| - 0.0028 17.6 55.3 0.039 13.9 6.5 5.2 1 1 4 5 5 5 3 Seryl-tRNA synthetase N-terminal domain DUF4201 PF13870.1 gi|14600971|ref|NP_147497.1| - 0.0037 16.7 60.3 0.013 14.9 7.4 3.8 1 1 2 3 3 3 3 Domain of unknown function (DUF4201) Bacillus_HBL PF05791.6 gi|14600971|ref|NP_147497.1| - 0.0038 16.6 25.1 0.12 11.7 4.8 3.9 1 1 2 4 4 4 2 Bacillus haemolytic enterotoxin (HBL) Spc7 PF08317.6 gi|14600971|ref|NP_147497.1| - 0.0049 15.5 50.0 0.0085 14.7 12.9 2.9 1 1 2 3 3 3 2 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|14600971|ref|NP_147497.1| - 0.0074 16.0 10.0 0.0074 16.0 6.9 3.5 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein DUF3584 PF12128.3 gi|14600971|ref|NP_147497.1| - 0.0083 13.5 39.7 0.011 13.1 27.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) NPV_P10 PF05531.7 gi|14600971|ref|NP_147497.1| - 0.0097 16.1 6.4 0.35 11.1 1.8 3.6 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|14600971|ref|NP_147497.1| - 0.01 15.6 9.0 0.019 14.7 1.7 3.2 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF972 PF06156.8 gi|14600971|ref|NP_147497.1| - 0.011 16.0 5.9 0.011 16.0 4.1 4.9 1 1 4 5 5 5 0 Protein of unknown function (DUF972) Mod_r PF07200.8 gi|14600971|ref|NP_147497.1| - 0.012 15.5 11.4 0.012 15.5 7.9 4.0 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein MCPsignal PF00015.16 gi|14600971|ref|NP_147497.1| - 0.014 14.9 13.0 0.018 14.6 3.7 2.4 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FliJ PF02050.11 gi|14600971|ref|NP_147497.1| - 0.014 15.4 14.2 0.014 15.4 9.8 3.9 1 1 2 3 3 3 0 Flagellar FliJ protein DUF904 PF06005.7 gi|14600971|ref|NP_147497.1| - 0.017 15.3 10.1 0.017 15.3 7.0 5.8 2 2 2 4 4 3 0 Protein of unknown function (DUF904) DUF4200 PF13863.1 gi|14600971|ref|NP_147497.1| - 0.019 14.8 5.4 0.019 14.8 3.7 5.2 1 1 1 4 4 4 0 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|14600971|ref|NP_147497.1| - 0.021 14.5 34.0 0.018 14.8 3.7 3.7 1 1 1 3 3 3 0 Laminin Domain II APG6 PF04111.7 gi|14600971|ref|NP_147497.1| - 0.022 13.8 51.0 0.016 14.2 10.9 3.2 1 1 2 3 3 3 0 Autophagy protein Apg6 SlyX PF04102.7 gi|14600971|ref|NP_147497.1| - 0.025 14.9 0.7 0.025 14.9 0.5 5.3 2 2 3 5 5 4 0 SlyX MscS_porin PF12795.2 gi|14600971|ref|NP_147497.1| - 0.031 13.5 35.6 0.028 13.7 9.3 3.0 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain LPP PF04728.8 gi|14600971|ref|NP_147497.1| - 0.045 13.5 0.1 9.7 6.0 0.0 3.5 2 1 2 4 4 4 0 Lipoprotein leucine-zipper WXG100 PF06013.7 gi|14600971|ref|NP_147497.1| - 0.051 13.5 2.9 5.3 7.1 0.2 3.8 2 2 0 2 2 2 0 Proteins of 100 residues with WXG TBPIP PF07106.8 gi|14600971|ref|NP_147497.1| - 0.053 13.0 51.9 0.5 9.8 9.2 4.4 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ATG16 PF08614.6 gi|14600971|ref|NP_147497.1| - 0.055 13.2 46.8 0.1 12.4 12.3 3.7 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) PilJ PF13675.1 gi|14600971|ref|NP_147497.1| - 0.059 13.6 13.8 1.6 9.0 1.5 3.8 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF3450 PF11932.3 gi|14600971|ref|NP_147497.1| - 0.066 12.4 29.4 0.053 12.7 5.1 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) SNARE PF05739.14 gi|14600971|ref|NP_147497.1| - 0.12 12.1 0.2 0.12 12.1 0.2 4.1 4 1 1 5 5 4 0 SNARE domain HSBP1 PF06825.7 gi|14600971|ref|NP_147497.1| - 0.15 11.6 8.9 0.075 12.6 0.7 3.5 2 1 1 3 3 3 0 Heat shock factor binding protein 1 Mnd1 PF03962.10 gi|14600971|ref|NP_147497.1| - 0.15 11.7 49.3 0.31 10.6 11.9 3.7 1 1 3 4 4 4 0 Mnd1 family DUF2935 PF11155.3 gi|14600971|ref|NP_147497.1| - 0.26 11.3 17.2 0.82 9.7 2.6 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF2935) PRANC PF09372.5 gi|14600971|ref|NP_147497.1| - 0.33 10.9 4.7 0.13 12.2 0.4 2.5 2 1 0 2 2 2 0 PRANC domain DUF3573 PF12097.3 gi|14600971|ref|NP_147497.1| - 0.44 9.1 10.1 0.026 13.1 1.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3573) DUF342 PF03961.8 gi|14600971|ref|NP_147497.1| - 0.56 8.5 49.9 0.52 8.6 11.6 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF342) ADIP PF11559.3 gi|14600971|ref|NP_147497.1| - 0.61 9.9 45.0 0.24 11.3 7.2 3.3 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Spectrin PF00435.16 gi|14600971|ref|NP_147497.1| - 0.67 10.2 36.1 1 9.7 7.5 3.7 2 1 1 3 3 3 0 Spectrin repeat CENP-F_leu_zip PF10473.4 gi|14600971|ref|NP_147497.1| - 0.7 9.7 65.0 0.14 12.0 15.5 3.4 1 1 3 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 RmuC PF02646.11 gi|14600971|ref|NP_147497.1| - 0.9 8.3 30.1 0.048 12.5 2.7 3.6 2 1 3 5 5 5 0 RmuC family Herpes_U30 PF04523.8 gi|14600971|ref|NP_147497.1| - 1 6.7 16.9 0.022 12.2 3.5 2.4 1 1 0 2 2 2 0 Herpes virus tegument protein U30 FUSC PF04632.7 gi|14600971|ref|NP_147497.1| - 1.1 7.5 13.8 0.44 8.9 3.7 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family GLE1 PF07817.8 gi|14600971|ref|NP_147497.1| - 1.5 7.7 12.2 1.8 7.4 1.6 2.5 2 1 0 2 2 2 0 GLE1-like protein DUF4618 PF15397.1 gi|14600971|ref|NP_147497.1| - 1.5 8.0 44.9 0.074 12.3 3.6 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) AAA_27 PF13514.1 gi|14600971|ref|NP_147497.1| - 2.3 5.8 43.7 0.2 9.3 14.7 2.0 1 1 1 2 2 2 0 AAA domain HAUS6_N PF14661.1 gi|14600971|ref|NP_147497.1| - 3 7.1 29.6 0.41 9.9 6.6 2.4 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Fib_alpha PF08702.5 gi|14600971|ref|NP_147497.1| - 3.4 7.7 30.3 1.1 9.4 8.0 3.3 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family FH2 PF02181.18 gi|14600971|ref|NP_147497.1| - 3.6 6.3 26.3 0.025 13.4 5.2 2.8 2 1 1 3 3 3 0 Formin Homology 2 Domain Atg14 PF10186.4 gi|14600971|ref|NP_147497.1| - 3.7 6.4 53.6 0.061 12.2 12.5 3.3 1 1 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 HOOK PF05622.7 gi|14600971|ref|NP_147497.1| - 4.5 4.9 50.0 0.028 12.2 10.3 2.9 1 1 2 3 3 2 0 HOOK protein Laminin_I PF06008.9 gi|14600971|ref|NP_147497.1| - 4.7 6.4 34.7 0.11 11.7 6.1 3.1 1 1 1 2 2 1 0 Laminin Domain I MbeD_MobD PF04899.7 gi|14600971|ref|NP_147497.1| - 4.9 7.1 12.1 0.71 9.8 0.7 4.3 2 1 2 4 4 4 0 MbeD/MobD like CAP_N PF01213.14 gi|14600971|ref|NP_147497.1| - 5 6.3 8.6 0.82 8.8 1.1 2.4 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal TMF_TATA_bd PF12325.3 gi|14600971|ref|NP_147497.1| - 5.2 6.8 58.0 1.7 8.4 8.4 4.9 1 1 5 6 6 6 0 TATA element modulatory factor 1 TATA binding DivIC PF04977.10 gi|14600971|ref|NP_147497.1| - 7 6.2 52.9 0.18 11.3 1.7 6.4 3 2 4 7 7 7 0 Septum formation initiator Lectin_N PF03954.9 gi|14600971|ref|NP_147497.1| - 7.5 5.9 9.9 0.37 10.2 0.6 3.0 3 2 0 3 3 2 0 Hepatic lectin, N-terminal domain FliD_C PF07195.7 gi|14600971|ref|NP_147497.1| - 9.1 5.4 14.7 2.4 7.3 4.9 3.1 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ATP_bind_1 PF03029.12 gi|118431199|ref|NP_147498.2| - 3.8e-59 200.1 0.0 4.5e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|118431199|ref|NP_147498.2| - 1.2e-05 24.7 0.1 1.8e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|118431199|ref|NP_147498.2| - 2.4e-05 25.1 0.1 5e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431199|ref|NP_147498.2| - 3.3e-05 23.9 0.0 6.9e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|118431199|ref|NP_147498.2| - 0.00012 20.9 0.2 0.00021 20.1 0.1 1.3 1 0 0 1 1 1 1 ArgK protein AAA_18 PF13238.1 gi|118431199|ref|NP_147498.2| - 0.0012 19.1 0.0 0.0032 17.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|118431199|ref|NP_147498.2| - 0.0034 17.3 0.0 0.0079 16.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|118431199|ref|NP_147498.2| - 0.0083 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|118431199|ref|NP_147498.2| - 0.01 15.5 0.1 0.18 11.4 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|118431199|ref|NP_147498.2| - 0.011 15.6 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|118431199|ref|NP_147498.2| - 0.013 14.5 0.4 0.024 13.6 0.2 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Zeta_toxin PF06414.7 gi|118431199|ref|NP_147498.2| - 0.032 13.3 0.0 0.056 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin APS_kinase PF01583.15 gi|118431199|ref|NP_147498.2| - 0.035 13.7 0.0 0.088 12.4 0.0 1.6 2 0 0 2 2 2 0 Adenylylsulphate kinase Herpes_Helicase PF02689.9 gi|118431199|ref|NP_147498.2| - 0.038 11.7 0.3 0.052 11.3 0.2 1.1 1 0 0 1 1 1 0 Helicase AAA_10 PF12846.2 gi|118431199|ref|NP_147498.2| - 0.043 13.2 0.1 0.059 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|118431199|ref|NP_147498.2| - 0.044 13.3 0.5 0.097 12.2 0.4 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|118431199|ref|NP_147498.2| - 0.056 13.2 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|118431199|ref|NP_147498.2| - 0.061 12.5 0.0 0.32 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|118431199|ref|NP_147498.2| - 0.061 13.1 0.7 0.93 9.2 0.2 2.2 2 0 0 2 2 2 0 Dynamin family NACHT PF05729.7 gi|118431199|ref|NP_147498.2| - 0.12 12.0 0.2 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.4 gi|118431199|ref|NP_147498.2| - 0.12 11.2 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|118431199|ref|NP_147498.2| - 0.13 11.1 0.1 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|118431199|ref|NP_147498.2| - 0.15 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|118431199|ref|NP_147498.2| - 0.16 11.5 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain COX2 PF00116.15 gi|118431200|ref|NP_147499.2| - 1.6e-19 69.9 0.2 5.7e-18 64.8 0.1 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain DUF898 PF05987.8 gi|118431200|ref|NP_147499.2| - 0.01 14.7 1.2 0.013 14.3 0.9 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) COX1 PF00115.15 gi|118431201|ref|NP_147500.2| - 6.9e-148 492.9 57.4 6.9e-148 492.9 39.8 2.3 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|118431201|ref|NP_147500.2| - 1.6e-23 83.5 14.5 1.6e-23 83.5 10.0 2.7 2 0 0 2 2 2 1 Cytochrome c oxidase subunit III COX4_pro PF03626.9 gi|118431202|ref|NP_147501.2| - 2.4e-12 46.7 6.4 3.6e-12 46.1 4.4 1.3 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV PRA1 PF03208.14 gi|118431202|ref|NP_147501.2| - 0.099 11.9 5.0 0.07 12.4 2.7 1.3 1 1 0 1 1 1 0 PRA1 family protein DUF3487 PF11990.3 gi|118431202|ref|NP_147501.2| - 0.65 9.4 4.3 0.22 10.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF4229 PF14012.1 gi|118431202|ref|NP_147501.2| - 0.67 9.8 9.9 0.072 12.9 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) SCO1-SenC PF02630.9 gi|118431203|ref|NP_147502.2| - 2.6e-06 27.1 0.0 5.6e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 SCO1/SenC Methyltrn_RNA_2 PF04013.7 gi|14600977|ref|NP_147503.1| - 2.2e-57 193.8 0.0 2.5e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase PEMT PF04191.8 gi|14600978|ref|NP_147504.1| - 4.7e-08 33.0 0.0 4.7e-08 33.0 0.0 2.3 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.9 gi|14600978|ref|NP_147504.1| - 1.8e-05 24.8 0.1 1.8e-05 24.8 0.1 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DAO PF01266.19 gi|118431204|ref|NP_147505.2| - 7.8e-29 100.6 4.3 4.7e-28 98.1 3.0 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|118431204|ref|NP_147505.2| - 7.8e-06 25.8 0.2 1.7e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|118431204|ref|NP_147505.2| - 2.6e-05 23.2 0.4 0.00073 18.4 0.5 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|118431204|ref|NP_147505.2| - 5.6e-05 21.7 0.1 8.9e-05 21.1 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|118431204|ref|NP_147505.2| - 0.00015 20.7 0.3 0.00021 20.2 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|118431204|ref|NP_147505.2| - 0.00023 21.0 1.0 0.0018 18.1 0.7 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|118431204|ref|NP_147505.2| - 0.00029 21.1 0.2 0.0008 19.7 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|118431204|ref|NP_147505.2| - 0.0078 15.7 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|118431204|ref|NP_147505.2| - 0.011 14.8 0.1 0.018 14.0 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.13 gi|118431204|ref|NP_147505.2| - 0.035 13.7 0.5 0.064 12.9 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|118431204|ref|NP_147505.2| - 0.036 13.1 0.5 0.057 12.4 0.3 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.12 gi|118431204|ref|NP_147505.2| - 0.072 12.1 2.1 0.17 10.9 0.1 2.3 2 1 1 3 3 3 0 Thi4 family SurE PF01975.12 gi|118431205|ref|NP_147506.2| - 1.4e-39 135.4 0.0 1.7e-39 135.1 0.0 1.0 1 0 0 1 1 1 1 Survival protein SurE Glyco_trans_4_4 PF13579.1 gi|118431205|ref|NP_147506.2| - 0.0019 18.3 0.0 0.0042 17.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Abhydrolase_5 PF12695.2 gi|118431205|ref|NP_147506.2| - 0.051 13.3 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family Transglut_core PF01841.14 gi|118431206|ref|NP_147507.2| - 0.013 15.7 0.1 0.027 14.6 0.1 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily Phage_integrase PF00589.17 gi|14600982|ref|NP_147508.1| - 8e-36 123.2 0.0 1.3e-35 122.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|14600982|ref|NP_147508.1| - 5.6e-06 26.4 2.3 6.2e-05 23.0 0.1 2.7 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|14600982|ref|NP_147508.1| - 9.9e-06 25.8 0.1 0.019 15.3 0.0 2.7 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.3 gi|14600982|ref|NP_147508.1| - 0.088 11.5 0.2 0.35 9.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Aldedh PF00171.17 gi|118431207|ref|NP_147509.2| - 2.1e-98 329.6 0.0 2.4e-98 329.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Adeno_E1B_55K PF01696.12 gi|118431207|ref|NP_147509.2| - 0.1 11.0 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen tRNA-synt_2b PF00587.20 gi|118431208|ref|NP_147510.2| - 1.3e-34 119.2 0.0 2.1e-34 118.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|118431208|ref|NP_147510.2| - 2.8e-08 33.5 0.2 6.3e-08 32.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain Ribosomal_L1 PF00687.16 gi|118431208|ref|NP_147510.2| - 0.084 12.2 0.0 0.59 9.4 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L1p/L10e family DUF2419 PF10343.4 gi|14600985|ref|NP_147511.1| - 8.5e-05 21.9 0.0 0.00025 20.4 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2419) DUF1886 PF09171.5 gi|14600985|ref|NP_147511.1| - 0.0017 17.4 0.0 0.0035 16.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1886) HhH-GPD PF00730.20 gi|14600985|ref|NP_147511.1| - 0.052 13.8 0.0 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein CARDB PF07705.6 gi|118431209|ref|NP_147512.2| - 0.13 12.3 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 CARDB Met_10 PF02475.11 gi|118431210|ref|NP_147514.2| - 2.3e-50 170.9 0.0 3.2e-50 170.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|118431210|ref|NP_147514.2| - 5.2e-06 26.4 0.0 1.2e-05 25.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|118431210|ref|NP_147514.2| - 2.1e-05 23.8 0.0 2.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|118431210|ref|NP_147514.2| - 2.7e-05 23.2 0.0 3.4e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|118431210|ref|NP_147514.2| - 4.7e-05 23.0 0.0 7.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|118431210|ref|NP_147514.2| - 4.8e-05 23.9 0.0 0.00011 22.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118431210|ref|NP_147514.2| - 0.00026 20.4 0.0 0.00038 19.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain MethyltransfD12 PF02086.10 gi|118431210|ref|NP_147514.2| - 0.027 13.9 0.0 0.038 13.4 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.1 gi|118431210|ref|NP_147514.2| - 0.032 13.8 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|118431210|ref|NP_147514.2| - 0.035 13.5 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TYW3 PF02676.9 gi|14600989|ref|NP_147515.1| - 5.8e-36 123.5 0.1 6.9e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 Phage_integrase PF00589.17 gi|118431212|ref|NP_147516.2| - 1.6e-06 27.9 0.1 2.5e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family DUF3435 PF11917.3 gi|118431212|ref|NP_147516.2| - 0.051 12.3 0.0 0.074 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Rnk_N PF14760.1 gi|118431212|ref|NP_147516.2| - 0.084 12.9 3.7 0.088 12.9 0.0 2.8 3 0 0 3 3 3 0 Rnk N-terminus GntR PF00392.16 gi|14600993|ref|NP_147519.1| - 0.0028 17.0 0.1 0.015 14.7 0.0 2.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|14600993|ref|NP_147519.1| - 0.0037 16.9 0.6 0.63 9.7 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|14600993|ref|NP_147519.1| - 0.02 14.2 0.3 0.85 9.0 0.0 2.9 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|14600993|ref|NP_147519.1| - 0.028 14.0 2.3 5.3 6.7 0.2 3.4 2 1 0 2 2 2 0 MarR family HTH_33 PF13592.1 gi|14600993|ref|NP_147519.1| - 0.029 13.8 1.9 0.11 11.9 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn helix DUF4095 PF13338.1 gi|14600993|ref|NP_147519.1| - 0.03 14.4 0.2 0.066 13.3 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) LexA_DNA_bind PF01726.11 gi|14600993|ref|NP_147519.1| - 0.085 12.4 0.3 1.1 8.8 0.0 2.7 3 0 0 3 3 3 0 LexA DNA binding domain HTH_23 PF13384.1 gi|14600993|ref|NP_147519.1| - 0.52 10.0 5.9 3.8 7.2 0.2 3.5 3 0 0 3 3 3 0 Homeodomain-like domain Peptidase_M48 PF01435.13 gi|14600995|ref|NP_147521.1| - 5.2e-10 39.2 0.1 6.6e-10 38.9 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 DUF45 PF01863.12 gi|14600995|ref|NP_147521.1| - 0.014 15.1 1.0 0.029 14.1 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF45 DUF2201_N PF13203.1 gi|14600995|ref|NP_147521.1| - 0.025 13.7 0.0 0.037 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF4157 PF13699.1 gi|14600995|ref|NP_147521.1| - 0.05 13.7 0.0 1.5 8.9 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4157) Peptidase_U49 PF10463.4 gi|14600995|ref|NP_147521.1| - 0.23 11.2 4.1 0.77 9.5 2.8 2.0 1 1 0 1 1 1 0 Peptidase U49 GIY-YIG PF01541.19 gi|118431215|ref|NP_147522.2| - 0.011 16.1 2.0 0.95 9.8 0.2 2.6 2 0 0 2 2 2 0 GIY-YIG catalytic domain RII_binding_1 PF10522.4 gi|118431215|ref|NP_147522.2| - 0.047 13.8 0.8 22 5.6 0.1 4.0 4 0 0 4 4 4 0 RII binding domain MtrG PF04210.8 gi|118431215|ref|NP_147522.2| - 0.13 11.9 0.9 5.5 6.7 0.1 2.6 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G IncA PF04156.9 gi|14600997|ref|NP_147523.1| - 1.7e-05 24.4 0.6 2.6e-05 23.8 0.4 1.5 1 0 0 1 1 1 1 IncA protein DUF973 PF06157.6 gi|14600997|ref|NP_147523.1| - 0.0014 17.6 2.9 0.002 17.1 2.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) SLAC1 PF03595.12 gi|14600997|ref|NP_147523.1| - 0.0074 14.9 4.4 0.0098 14.5 3.0 1.1 1 0 0 1 1 1 1 Voltage-dependent anion channel DUF4231 PF14015.1 gi|14600997|ref|NP_147523.1| - 0.053 13.5 0.5 0.094 12.7 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) NfeD PF01957.13 gi|14600997|ref|NP_147523.1| - 0.11 12.6 3.0 0.16 12.0 2.1 1.3 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding m04gp34like PF12216.3 gi|14600997|ref|NP_147523.1| - 0.15 11.3 1.1 11 5.2 0.2 2.3 2 0 0 2 2 2 0 Immune evasion protein DUF161 PF02588.10 gi|14600997|ref|NP_147523.1| - 0.18 12.0 6.7 0.36 11.1 4.7 1.5 1 0 0 1 1 1 0 Uncharacterized BCR, YitT family COG1284 zf-DHHC PF01529.15 gi|14600997|ref|NP_147523.1| - 0.49 9.7 3.5 0.78 9.1 2.5 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase MARVEL PF01284.18 gi|14600997|ref|NP_147523.1| - 1.7 8.4 6.8 16 5.3 2.3 2.2 2 0 0 2 2 2 0 Membrane-associating domain Vpu PF00558.14 gi|14600997|ref|NP_147523.1| - 9 5.9 6.3 23 4.6 1.8 2.6 2 0 0 2 2 2 0 Vpu protein Claudin_3 PF06653.6 gi|118431216|ref|YP_874852.1| - 0.041 13.6 1.6 0.053 13.2 1.1 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like PQ-loop PF04193.9 gi|118431216|ref|YP_874852.1| - 0.054 13.0 3.8 0.12 11.9 0.1 2.1 2 0 0 2 2 2 0 PQ loop repeat DctQ PF04290.7 gi|118431216|ref|YP_874852.1| - 0.1 12.3 3.8 0.13 12.0 2.6 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component HAMP PF00672.20 gi|118431216|ref|YP_874852.1| - 0.15 12.2 0.7 0.15 12.2 0.5 2.1 2 0 0 2 2 2 0 HAMP domain DUF4064 PF13273.1 gi|118431216|ref|YP_874852.1| - 0.38 10.8 4.5 0.55 10.3 3.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) MgtE PF01769.11 gi|118431216|ref|YP_874852.1| - 0.43 10.8 3.0 0.52 10.5 2.1 1.1 1 0 0 1 1 1 0 Divalent cation transporter TctB PF07331.6 gi|118431216|ref|YP_874852.1| - 0.48 10.0 8.0 1.7 8.2 0.6 2.1 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family FeoB_C PF07664.7 gi|118431216|ref|YP_874852.1| - 1.4 8.3 11.0 0.46 9.9 0.9 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B C terminus PAP2 PF01569.16 gi|118431216|ref|YP_874852.1| - 1.6 8.4 7.3 0.77 9.4 1.5 2.0 2 0 0 2 2 2 0 PAP2 superfamily TM_helix PF05552.7 gi|118431216|ref|YP_874852.1| - 1.8 8.2 6.1 1.8 8.2 0.1 2.2 2 0 0 2 2 2 0 Conserved TM helix DUF4282 PF14110.1 gi|118431216|ref|YP_874852.1| - 2.4 8.4 9.0 3.8 7.7 6.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2768 PF10966.3 gi|118431216|ref|YP_874852.1| - 7.6 6.7 11.4 2 8.6 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2768) ABC2_membrane_3 PF12698.2 gi|118431216|ref|YP_874852.1| - 8.3 5.3 7.4 10 5.0 5.2 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DNA_pol_lambd_f PF10391.4 gi|14601001|ref|NP_147527.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Peptidase_A24 PF01478.13 gi|14601001|ref|NP_147527.1| - 0.46 10.6 7.4 0.89 9.7 0.1 2.9 2 1 1 3 3 3 0 Type IV leader peptidase family MerR-DNA-bind PF09278.6 gi|14601001|ref|NP_147527.1| - 0.84 10.0 4.7 1.9 8.9 0.1 2.3 2 0 0 2 2 2 0 MerR, DNA binding AAA_10 PF12846.2 gi|118431219|ref|NP_147530.2| - 0.0075 15.7 1.4 0.54 9.6 0.0 2.8 2 1 1 3 3 3 1 AAA-like domain AAA_16 PF13191.1 gi|118431219|ref|NP_147530.2| - 0.021 14.8 0.1 0.051 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain Zot PF05707.7 gi|118431219|ref|NP_147530.2| - 0.028 13.8 0.3 1 8.8 0.1 2.2 1 1 0 2 2 2 0 Zonular occludens toxin (Zot) DUF2075 PF09848.4 gi|118431219|ref|NP_147530.2| - 0.048 12.6 0.0 0.07 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|118431219|ref|NP_147530.2| - 0.097 12.8 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Rz1 PF06085.6 gi|118431220|ref|YP_874853.1| - 0.0092 15.3 0.2 0.021 14.2 0.1 1.6 1 0 0 1 1 1 1 Lipoprotein Rz1 precursor Acyl_transf_3 PF01757.17 gi|118431220|ref|YP_874853.1| - 0.035 12.9 5.1 0.039 12.8 3.5 1.0 1 0 0 1 1 1 0 Acyltransferase family Tic20 PF09685.5 gi|118431220|ref|YP_874853.1| - 0.055 13.4 2.3 0.082 12.8 1.6 1.3 1 1 0 1 1 1 0 Tic20-like protein DUF912 PF06024.7 gi|118431220|ref|YP_874853.1| - 0.19 11.7 2.5 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ABC2_membrane_4 PF12730.2 gi|118431220|ref|YP_874853.1| - 0.35 9.9 4.3 0.44 9.6 3.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3566 PF12089.3 gi|118431220|ref|YP_874853.1| - 2.2 8.2 8.4 5.5 7.0 5.8 1.6 1 1 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) HemY_N PF07219.8 gi|118431220|ref|YP_874853.1| - 5.3 6.6 6.0 8.4 6.0 1.3 2.0 2 0 0 2 2 2 0 HemY protein N-terminus DUF4418 PF14387.1 gi|118431223|ref|NP_147541.2| - 0.36 10.5 2.9 0.63 9.7 2.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) SieB PF14163.1 gi|118431223|ref|NP_147541.2| - 0.82 9.2 6.2 1.1 8.8 3.6 1.6 2 0 0 2 2 2 0 Superinfection exclusion protein B DUF1206 PF06724.6 gi|118431223|ref|NP_147541.2| - 1.3 8.8 9.2 1.7 8.4 6.3 1.3 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) DUF4064 PF13273.1 gi|14601017|ref|NP_147543.1| - 0.067 13.3 3.9 0.08 13.0 2.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF2029 PF09594.5 gi|14601017|ref|NP_147543.1| - 0.069 12.6 5.5 0.081 12.4 3.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) DUF1469 PF07332.6 gi|14601017|ref|NP_147543.1| - 0.52 10.0 9.3 2.2 8.0 1.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Fst_toxin PF13955.1 gi|14601017|ref|NP_147543.1| - 0.63 9.7 8.6 0.16 11.6 2.0 2.3 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system DUF3040 PF11239.3 gi|14601017|ref|NP_147543.1| - 1.5 8.8 6.7 1.6 8.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) CTV_P6 PF06706.6 gi|14601017|ref|NP_147543.1| - 1.8 8.1 8.1 0.54 9.7 2.2 2.3 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein DUF2613 PF11021.3 gi|14601017|ref|NP_147543.1| - 6.6 6.5 10.4 3.9 7.2 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DUF4064 PF13273.1 gi|118431224|ref|YP_874854.1| - 0.04 14.0 3.4 0.052 13.6 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) FtsX PF02687.16 gi|118431224|ref|YP_874854.1| - 0.43 10.3 6.9 0.6 9.8 4.8 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF2955 PF11168.3 gi|118431224|ref|YP_874854.1| - 0.43 10.2 5.7 0.42 10.2 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2955) ABC2_membrane_4 PF12730.2 gi|118431224|ref|YP_874854.1| - 0.56 9.3 7.7 0.65 9.1 5.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1469 PF07332.6 gi|118431224|ref|YP_874854.1| - 1.9 8.2 10.4 1.1 8.9 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF202 PF02656.10 gi|118431224|ref|YP_874854.1| - 2.3 8.5 5.3 6.4 7.0 3.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) CTV_P6 PF06706.6 gi|118431224|ref|YP_874854.1| - 5 6.7 10.9 1.4 8.4 3.7 2.2 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Tic20 PF09685.5 gi|118431224|ref|YP_874854.1| - 7 6.6 9.8 36 4.3 6.8 1.9 1 1 0 1 1 1 0 Tic20-like protein Fst_toxin PF13955.1 gi|118431224|ref|YP_874854.1| - 7.3 6.3 8.7 0.6 9.8 1.5 2.4 3 0 0 3 3 3 0 Toxin Fst, type I toxin-antitoxin system DUF4190 PF13828.1 gi|118431224|ref|YP_874854.1| - 7.4 6.2 12.2 0.53 9.8 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4190) Laminin_G_3 PF13385.1 gi|118431225|ref|NP_147545.2| - 0.00067 19.9 0.4 0.0013 19.0 0.3 1.4 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily DUF1469 PF07332.6 gi|118431226|ref|NP_147548.2| - 0.4 10.4 5.9 0.5 10.0 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1072 PF06380.6 gi|118431226|ref|NP_147548.2| - 0.67 9.6 3.9 1.1 8.9 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) Peptidase_MA_2 PF13485.1 gi|118431231|ref|NP_147557.2| - 0.00088 19.3 0.1 0.0017 18.4 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily TniQ PF06527.6 gi|118431231|ref|NP_147557.2| - 0.081 13.1 2.7 0.15 12.2 0.6 2.1 2 0 0 2 2 2 0 TniQ RHH_1 PF01402.16 gi|118431231|ref|NP_147557.2| - 0.29 11.0 0.2 0.29 11.0 0.1 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Med16 PF11635.3 gi|118431231|ref|NP_147557.2| - 0.48 8.3 0.9 0.63 7.9 0.7 1.0 1 0 0 1 1 1 0 Mediator complex subunit 16 US22 PF02393.11 gi|118431232|ref|YP_874856.1| - 0.073 13.0 0.0 0.09 12.8 0.0 1.1 1 0 0 1 1 1 0 US22 like Attachment_P66 PF11263.3 gi|14601034|ref|NP_147560.1| - 0.072 12.1 0.0 0.082 11.9 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi attachment protein P66 DUF1422 PF07226.6 gi|118431233|ref|NP_147561.2| - 0.019 14.6 9.0 0.38 10.5 0.6 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1422) DUF2583 PF10762.4 gi|118431233|ref|NP_147561.2| - 4.2 7.5 6.6 17 5.6 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) FA_desaturase PF00487.19 gi|118431233|ref|NP_147561.2| - 6.3 6.1 6.6 3.2 7.1 2.5 1.8 1 1 1 2 2 2 0 Fatty acid desaturase DUF4371 PF14291.1 gi|118431234|ref|YP_874857.1| - 0.046 13.2 0.1 0.087 12.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) KRAB PF01352.22 gi|118431235|ref|NP_147562.2| - 0.016 14.6 0.2 0.026 13.9 0.1 1.4 1 0 0 1 1 1 0 KRAB box HTH_27 PF13463.1 gi|118431235|ref|NP_147562.2| - 0.034 14.4 0.0 0.054 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ParG PF09274.5 gi|118431235|ref|NP_147562.2| - 0.089 12.7 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 ParG DNA_methylase PF00145.12 gi|118431236|ref|NP_147563.2| - 3e-52 177.8 0.0 7.7e-51 173.1 0.0 2.6 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase HhH-GPD PF00730.20 gi|118431238|ref|NP_147565.2| - 1.4e-15 57.5 0.0 1.9e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|118431238|ref|NP_147565.2| - 8e-07 29.0 7.1 2e-06 27.7 4.9 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|118431238|ref|NP_147565.2| - 1.1e-05 24.8 0.0 2.7e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif MSC PF09402.5 gi|118431238|ref|NP_147565.2| - 0.049 12.3 0.3 0.066 11.9 0.2 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain Y_phosphatase3C PF13348.1 gi|118431238|ref|NP_147565.2| - 0.095 12.8 1.5 2.8 8.1 0.0 2.9 3 0 0 3 3 3 0 Tyrosine phosphatase family C-terminal region AAA_14 PF13173.1 gi|14601042|ref|NP_147568.1| - 8e-06 25.7 0.0 1.8e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|14601042|ref|NP_147568.1| - 0.00036 20.7 0.0 0.0032 17.6 0.0 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|14601042|ref|NP_147568.1| - 0.001 19.0 0.0 0.012 15.5 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|14601042|ref|NP_147568.1| - 0.0011 18.4 0.0 0.0027 17.1 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|14601042|ref|NP_147568.1| - 0.0068 16.1 0.2 0.028 14.1 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|14601042|ref|NP_147568.1| - 0.0089 15.7 0.0 0.065 13.0 0.0 2.5 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|14601042|ref|NP_147568.1| - 0.028 14.5 0.0 0.097 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|14601042|ref|NP_147568.1| - 0.042 13.4 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_17 PF13207.1 gi|14601042|ref|NP_147568.1| - 0.047 14.5 0.3 0.21 12.4 0.1 2.4 2 2 0 2 2 2 0 AAA domain Autoind_bind PF03472.10 gi|14601042|ref|NP_147568.1| - 0.062 12.6 0.0 0.41 9.9 0.0 2.1 2 0 0 2 2 2 0 Autoinducer binding domain AAA_18 PF13238.1 gi|14601042|ref|NP_147568.1| - 0.093 13.0 0.0 4 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|14601042|ref|NP_147568.1| - 0.14 12.1 0.0 0.8 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain TetR_N PF00440.18 gi|14601043|ref|NP_147569.1| - 0.0043 16.6 0.0 0.0069 16.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_27 PF13463.1 gi|14601043|ref|NP_147569.1| - 0.0071 16.6 0.1 0.0094 16.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|14601043|ref|NP_147569.1| - 0.0096 15.5 0.1 0.012 15.2 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|14601043|ref|NP_147569.1| - 0.011 15.5 0.1 0.014 15.2 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_6 PF01418.12 gi|14601043|ref|NP_147569.1| - 0.12 12.1 0.0 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family LexA_DNA_bind PF01726.11 gi|14601043|ref|NP_147569.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain HTH_IclR PF09339.5 gi|118431240|ref|YP_874858.1| - 2.7e-09 36.4 0.0 3.9e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|118431240|ref|YP_874858.1| - 4.4e-09 35.8 0.2 6e-09 35.4 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|118431240|ref|YP_874858.1| - 4.9e-08 33.1 0.1 5.8e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|118431240|ref|YP_874858.1| - 1.7e-06 27.5 0.0 2.3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|118431240|ref|YP_874858.1| - 3.7e-05 23.4 0.0 5.7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|118431240|ref|YP_874858.1| - 6.3e-05 22.6 0.0 8.3e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|118431240|ref|YP_874858.1| - 0.00018 20.8 0.0 0.00029 20.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|118431240|ref|YP_874858.1| - 0.001 18.6 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HemN_C PF06969.11 gi|118431240|ref|YP_874858.1| - 0.0014 18.6 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_29 PF13551.1 gi|118431240|ref|YP_874858.1| - 0.0016 18.5 0.1 0.0018 18.3 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn helix MotA_activ PF09114.5 gi|118431240|ref|YP_874858.1| - 0.013 15.2 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Rrf2 PF02082.15 gi|118431240|ref|YP_874858.1| - 0.013 15.5 0.0 0.024 14.7 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.1 gi|118431240|ref|YP_874858.1| - 0.016 15.0 0.0 0.018 14.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_28 PF13518.1 gi|118431240|ref|YP_874858.1| - 0.03 14.3 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|118431240|ref|YP_874858.1| - 0.032 14.0 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF742 PF05331.6 gi|118431240|ref|YP_874858.1| - 0.033 13.7 0.2 0.038 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_1 PF00126.22 gi|118431240|ref|YP_874858.1| - 0.063 13.0 0.3 0.13 11.9 0.1 1.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF387 PF04079.11 gi|118431240|ref|YP_874858.1| - 0.075 12.4 0.0 0.087 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) MarR PF01047.17 gi|118431240|ref|YP_874858.1| - 0.081 12.6 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.7 gi|118431240|ref|YP_874858.1| - 0.086 12.3 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|118431240|ref|YP_874858.1| - 0.091 12.3 0.0 0.21 11.1 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PrpR_N PF06506.6 gi|118431241|ref|YP_874859.1| - 0.0019 17.6 0.1 0.35 10.2 0.0 2.0 2 0 0 2 2 2 2 Propionate catabolism activator ACP_syn_III PF08545.5 gi|118431241|ref|YP_874859.1| - 0.098 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Activator-TraM PF11657.3 gi|14601046|ref|NP_147572.1| - 0.065 12.7 1.4 0.1 12.0 1.0 1.3 1 0 0 1 1 1 0 Transcriptional activator TraM CorA PF01544.13 gi|14601046|ref|NP_147572.1| - 0.22 10.5 1.5 0.37 9.7 1.0 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4102 PF13356.1 gi|14601046|ref|NP_147572.1| - 0.54 10.1 9.5 6.2 6.7 6.6 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4102) Hpt PF01627.18 gi|14601046|ref|NP_147572.1| - 0.92 9.5 8.5 5.1 7.1 3.1 2.5 2 1 1 3 3 3 0 Hpt domain IncA PF04156.9 gi|14601046|ref|NP_147572.1| - 1.2 8.7 7.0 0.34 10.4 3.1 1.4 2 0 0 2 2 2 0 IncA protein RHH_1 PF01402.16 gi|118431242|ref|YP_874860.1| - 1e-06 28.3 0.0 3.3e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RelB PF04221.7 gi|118431242|ref|YP_874860.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 RelB antitoxin MarR_2 PF12802.2 gi|118431245|ref|NP_147574.2| - 0.19 11.4 1.1 0.37 10.4 0.8 1.6 1 1 0 1 1 1 0 MarR family DUF1905 PF08922.6 gi|118431246|ref|YP_874863.1| - 0.0071 15.8 0.0 0.014 14.9 0.0 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF1905) Hydrolase_3 PF08282.7 gi|118431248|ref|NP_147576.2| - 0.047 13.2 0.0 0.36 10.3 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Osmo_MPGsynth PF09488.5 gi|118431249|ref|NP_147578.2| - 3.1e-137 457.3 0.0 3.5e-137 457.1 0.0 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) DUF3368 PF11848.3 gi|14601053|ref|NP_147579.1| - 3.9e-16 58.3 0.2 1.6e-15 56.4 0.5 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) UBA_3 PF09288.5 gi|14601053|ref|NP_147579.1| - 0.019 14.5 1.6 0.62 9.6 0.2 2.5 1 1 1 2 2 2 0 Fungal ubiquitin-associated domain UPF0175 PF03683.8 gi|118431250|ref|NP_147580.2| - 3.6e-20 71.2 0.1 3.8e-20 71.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) CopD PF05425.8 gi|14601055|ref|NP_147581.1| - 4e-18 65.5 6.1 4e-18 65.5 4.2 1.4 2 0 0 2 2 2 1 Copper resistance protein D UPF0093 PF03653.8 gi|14601055|ref|NP_147581.1| - 0.0023 17.8 2.7 0.0051 16.7 1.9 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0093) DUF4149 PF13664.1 gi|14601055|ref|NP_147581.1| - 0.0061 16.6 1.5 0.0061 16.6 1.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4149) DUF2269 PF10027.4 gi|14601055|ref|NP_147581.1| - 0.011 15.5 5.9 0.015 15.0 4.1 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF989 PF06181.6 gi|14601055|ref|NP_147581.1| - 0.014 14.4 0.2 0.014 14.4 0.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF989) DUF2214 PF09980.4 gi|14601055|ref|NP_147581.1| - 0.16 11.7 4.8 0.87 9.3 3.3 2.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2214) DUF4514 PF14986.1 gi|14601055|ref|NP_147581.1| - 0.31 10.8 1.9 0.72 9.7 1.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) UPF0182 PF03699.8 gi|14601055|ref|NP_147581.1| - 0.32 8.8 1.9 0.38 8.6 1.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF3487 PF11990.3 gi|14601055|ref|NP_147581.1| - 3.3 7.1 7.5 0.45 9.9 0.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3487) AAA_5 PF07728.9 gi|118431251|ref|NP_147582.2| - 7.1e-08 32.2 0.0 3.7e-07 29.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|118431251|ref|NP_147582.2| - 4.6e-06 26.8 0.0 2.3e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|118431251|ref|NP_147582.2| - 3.6e-05 24.5 0.0 6.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|118431251|ref|NP_147582.2| - 7.3e-05 22.9 0.0 0.00034 20.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431251|ref|NP_147582.2| - 7.4e-05 22.8 0.0 0.00019 21.4 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|118431251|ref|NP_147582.2| - 0.00011 21.2 0.0 0.00026 20.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|118431251|ref|NP_147582.2| - 0.00052 19.9 0.0 0.0041 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|118431251|ref|NP_147582.2| - 0.00072 19.0 0.0 0.46 9.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_33 PF13671.1 gi|118431251|ref|NP_147582.2| - 0.00072 19.4 0.0 0.002 17.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|118431251|ref|NP_147582.2| - 0.0049 16.0 0.0 0.023 13.8 0.0 2.2 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|118431251|ref|NP_147582.2| - 0.0069 15.4 0.0 0.092 11.7 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|118431251|ref|NP_147582.2| - 0.015 15.0 0.1 0.096 12.4 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|118431251|ref|NP_147582.2| - 0.015 14.6 0.0 0.034 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|118431251|ref|NP_147582.2| - 0.023 14.1 0.0 0.052 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|118431251|ref|NP_147582.2| - 0.024 14.9 0.0 0.043 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|118431251|ref|NP_147582.2| - 0.054 13.4 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|118431251|ref|NP_147582.2| - 0.066 12.9 0.0 0.17 11.5 0.0 1.7 2 0 0 2 2 1 0 NTPase ABC_tran PF00005.22 gi|118431251|ref|NP_147582.2| - 0.069 13.4 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|118431251|ref|NP_147582.2| - 0.079 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|118431251|ref|NP_147582.2| - 0.085 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|118431251|ref|NP_147582.2| - 0.086 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|118431251|ref|NP_147582.2| - 0.095 13.2 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein IstB_IS21 PF01695.12 gi|118431251|ref|NP_147582.2| - 0.1 12.0 0.0 0.93 8.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|118431251|ref|NP_147582.2| - 0.11 12.0 0.0 0.37 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|118431251|ref|NP_147582.2| - 0.17 11.2 0.0 0.57 9.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_3 PF07726.6 gi|118431251|ref|NP_147582.2| - 0.18 11.4 0.0 16 5.1 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) VWA_CoxE PF05762.9 gi|118431252|ref|NP_147584.2| - 0.012 14.7 0.2 0.029 13.4 0.1 1.7 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein SUI1 PF01253.17 gi|118431252|ref|NP_147584.2| - 0.074 12.8 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor SUI1 DUF2201 PF09967.4 gi|118431252|ref|NP_147584.2| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 VWA-like domain (DUF2201) Acetyltransf_CG PF14542.1 gi|118431255|ref|NP_147587.2| - 3.9e-20 71.5 0.0 5.7e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.19 gi|118431255|ref|NP_147587.2| - 7.6e-09 35.4 0.0 1.2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|118431255|ref|NP_147587.2| - 3e-05 23.8 0.1 5.9e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|118431255|ref|NP_147587.2| - 4e-05 23.6 0.1 5.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|118431255|ref|NP_147587.2| - 0.00059 19.9 0.0 0.0012 18.9 0.0 1.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|118431255|ref|NP_147587.2| - 0.046 13.4 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Stc1 PF12898.2 gi|14601062|ref|NP_147588.1| - 0.025 14.6 0.3 0.042 13.9 0.2 1.2 1 0 0 1 1 1 0 Stc1 domain tRNA_SAD PF07973.9 gi|118431256|ref|NP_147589.2| - 2.1e-11 43.5 0.5 3.5e-11 42.8 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|118431256|ref|NP_147589.2| - 8.9e-10 37.4 0.0 1.1e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Cpn60_TCP1 PF00118.19 gi|118431257|ref|NP_147591.2| - 6.7e-167 555.9 10.4 7.6e-167 555.7 7.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PCP_red PF08369.5 gi|118431257|ref|NP_147591.2| - 0.2 11.5 2.7 52 3.8 0.2 4.0 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit adh_short_C2 PF13561.1 gi|14601066|ref|NP_147592.1| - 1.4e-24 87.1 0.0 1.7e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|14601066|ref|NP_147592.1| - 7.1e-19 68.3 0.7 1.3e-18 67.4 0.1 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|14601066|ref|NP_147592.1| - 1.8e-09 37.5 0.2 4.7e-08 32.8 0.0 2.2 1 1 1 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|14601066|ref|NP_147592.1| - 1.8e-05 24.8 0.2 2.8e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding ThiF PF00899.16 gi|14601066|ref|NP_147592.1| - 0.12 12.1 0.3 2.4 7.9 0.0 2.3 1 1 1 2 2 2 0 ThiF family Eno-Rase_NADH_b PF12242.3 gi|14601066|ref|NP_147592.1| - 0.18 11.6 1.9 0.29 10.9 0.1 2.1 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RNA_pol_Rpb6 PF01192.17 gi|14601067|ref|NP_147593.1| - 6.6e-18 64.1 0.0 1e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.17 gi|118431258|ref|NP_147594.2| - 3.3e-14 52.3 9.5 1.4e-13 50.2 5.6 2.5 1 1 1 2 2 2 1 Peptidase family M50 OCD_Mu_crystall PF02423.10 gi|118431259|ref|NP_147595.2| - 1.3e-30 106.2 0.0 1.7e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|118431259|ref|NP_147595.2| - 7.6e-07 29.2 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|118431259|ref|NP_147595.2| - 0.029 13.3 0.1 0.039 12.9 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|118431259|ref|NP_147595.2| - 0.085 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|118431259|ref|NP_147595.2| - 0.089 13.2 0.1 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Peripla_BP_6 PF13458.1 gi|14601070|ref|NP_147596.1| - 8.8e-41 140.3 3.9 1.3e-40 139.8 2.7 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|14601070|ref|NP_147596.1| - 9.2e-31 106.8 0.2 1.2e-30 106.4 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.8 gi|14601070|ref|NP_147596.1| - 8.3e-10 37.8 0.5 1.2e-09 37.3 0.4 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.1 gi|14601070|ref|NP_147596.1| - 1.8e-08 33.5 0.1 2.4e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain DUF4366 PF14283.1 gi|14601070|ref|NP_147596.1| - 0.0032 16.9 0.1 0.006 16.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) MRP-L20 PF12824.2 gi|14601070|ref|NP_147596.1| - 0.035 14.0 0.0 0.52 10.2 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal protein subunit L20 dTMP_synthase PF02593.9 gi|14601070|ref|NP_147596.1| - 0.063 12.6 0.2 0.39 10.0 0.0 2.2 3 0 0 3 3 3 0 Thymidylate synthase Herpes_gE PF02480.11 gi|14601070|ref|NP_147596.1| - 0.16 10.1 0.1 0.23 9.6 0.1 1.2 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E MGC-24 PF05283.6 gi|14601070|ref|NP_147596.1| - 0.63 9.8 3.3 1.2 8.9 2.3 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) ABC_tran PF00005.22 gi|14601071|ref|NP_147597.1| - 1.7e-30 106.1 0.0 2.2e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14601071|ref|NP_147597.1| - 2.7e-13 50.5 0.1 1.9e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|14601071|ref|NP_147597.1| - 4.1e-09 35.9 0.0 7.9e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|14601071|ref|NP_147597.1| - 6.7e-07 28.7 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|14601071|ref|NP_147597.1| - 3.1e-06 26.6 0.0 6e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|14601071|ref|NP_147597.1| - 8e-06 25.1 0.0 0.087 11.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|14601071|ref|NP_147597.1| - 1.4e-05 24.7 0.1 6.8e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|14601071|ref|NP_147597.1| - 2.1e-05 24.9 0.3 3.1e-05 24.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|14601071|ref|NP_147597.1| - 0.00011 22.3 0.0 0.00034 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|14601071|ref|NP_147597.1| - 0.00014 21.3 0.1 0.018 14.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|14601071|ref|NP_147597.1| - 0.00037 20.0 0.9 0.045 13.1 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain Arch_ATPase PF01637.13 gi|14601071|ref|NP_147597.1| - 0.00054 19.7 0.1 0.021 14.5 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase ABC_ATPase PF09818.4 gi|14601071|ref|NP_147597.1| - 0.0018 16.9 0.7 0.094 11.2 0.1 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|14601071|ref|NP_147597.1| - 0.0021 17.2 0.0 0.0033 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|14601071|ref|NP_147597.1| - 0.0047 16.3 0.0 0.0079 15.6 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|14601071|ref|NP_147597.1| - 0.0052 15.3 0.0 0.0068 14.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|14601071|ref|NP_147597.1| - 0.0053 16.7 0.1 0.0098 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|14601071|ref|NP_147597.1| - 0.0084 15.7 0.0 0.03 13.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|14601071|ref|NP_147597.1| - 0.012 14.5 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|14601071|ref|NP_147597.1| - 0.022 15.6 0.1 0.26 12.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|14601071|ref|NP_147597.1| - 0.031 13.8 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|14601071|ref|NP_147597.1| - 0.037 13.8 0.1 0.079 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|14601071|ref|NP_147597.1| - 0.041 13.0 0.8 0.37 9.8 0.1 2.1 2 0 0 2 2 2 0 KaiC AAA PF00004.24 gi|14601071|ref|NP_147597.1| - 0.041 14.0 0.1 0.092 12.9 0.1 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|14601071|ref|NP_147597.1| - 0.048 13.1 0.2 0.089 12.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|14601071|ref|NP_147597.1| - 0.048 13.3 0.1 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|14601071|ref|NP_147597.1| - 0.05 13.3 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|14601071|ref|NP_147597.1| - 0.087 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|14601071|ref|NP_147597.1| - 0.088 12.7 0.1 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|14601071|ref|NP_147597.1| - 0.092 12.2 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF3584 PF12128.3 gi|14601071|ref|NP_147597.1| - 0.16 9.3 0.1 0.2 8.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rad17 PF03215.10 gi|14601071|ref|NP_147597.1| - 0.17 10.5 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_tran PF00005.22 gi|14601072|ref|NP_147598.1| - 1.1e-30 106.7 0.0 1.4e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14601072|ref|NP_147598.1| - 8.4e-17 62.0 0.0 1.2e-14 55.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|14601072|ref|NP_147598.1| - 1.7e-07 30.7 0.0 1.8e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|14601072|ref|NP_147598.1| - 5.4e-06 25.7 0.0 0.01 14.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|14601072|ref|NP_147598.1| - 2.3e-05 24.8 0.0 3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|14601072|ref|NP_147598.1| - 4.5e-05 23.0 0.1 0.0049 16.3 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|14601072|ref|NP_147598.1| - 8.3e-05 22.7 0.0 0.00064 19.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|14601072|ref|NP_147598.1| - 0.00014 21.3 0.0 0.00028 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|14601072|ref|NP_147598.1| - 0.00045 19.6 0.0 0.00065 19.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|14601072|ref|NP_147598.1| - 0.00063 18.4 0.1 0.0018 16.9 0.1 1.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class ArgK PF03308.11 gi|14601072|ref|NP_147598.1| - 0.0008 18.2 0.6 0.095 11.4 0.0 2.1 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|14601072|ref|NP_147598.1| - 0.0029 17.6 0.0 0.0058 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|14601072|ref|NP_147598.1| - 0.0058 15.8 0.0 0.0099 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|14601072|ref|NP_147598.1| - 0.0083 16.0 0.0 0.21 11.5 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|14601072|ref|NP_147598.1| - 0.0098 15.4 0.4 0.033 13.7 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|14601072|ref|NP_147598.1| - 0.01 15.7 0.0 0.027 14.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|14601072|ref|NP_147598.1| - 0.014 14.4 0.2 3.3 6.7 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.1 gi|14601072|ref|NP_147598.1| - 0.016 15.0 0.1 0.031 14.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|14601072|ref|NP_147598.1| - 0.023 14.4 0.1 0.032 13.9 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|14601072|ref|NP_147598.1| - 0.037 13.4 0.3 0.057 12.8 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|14601072|ref|NP_147598.1| - 0.038 13.5 0.0 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|14601072|ref|NP_147598.1| - 0.052 12.9 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 MutS domain V Miro PF08477.8 gi|14601072|ref|NP_147598.1| - 0.052 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|14601072|ref|NP_147598.1| - 0.083 12.8 0.2 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|14601072|ref|NP_147598.1| - 0.088 12.5 0.4 0.29 10.8 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|14601072|ref|NP_147598.1| - 0.097 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase Zeta_toxin PF06414.7 gi|14601072|ref|NP_147598.1| - 0.1 11.6 0.0 0.39 9.7 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin Adeno_IVa2 PF02456.10 gi|14601072|ref|NP_147598.1| - 0.12 11.0 0.0 0.22 10.1 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein Septin PF00735.13 gi|14601072|ref|NP_147598.1| - 0.12 11.3 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_17 PF13207.1 gi|14601072|ref|NP_147598.1| - 0.12 13.1 0.5 0.44 11.3 0.3 2.1 2 1 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|14601072|ref|NP_147598.1| - 0.14 11.7 0.2 0.23 11.0 0.2 1.3 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|14601072|ref|NP_147598.1| - 0.21 10.0 0.3 0.58 8.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|14601073|ref|NP_147599.1| - 5.9e-32 110.6 36.4 7.6e-32 110.3 25.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|118431260|ref|NP_147600.2| - 3e-32 111.6 26.4 4.1e-32 111.2 18.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Thiolase_N PF00108.18 gi|118431262|ref|NP_147604.2| - 1.3e-13 50.5 0.6 8.5e-11 41.3 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|118431262|ref|NP_147604.2| - 7.8e-09 35.0 0.1 1.4e-07 30.9 0.0 2.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|118431262|ref|NP_147604.2| - 2.7e-08 33.6 3.8 1.3e-07 31.4 2.5 2.0 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|118431262|ref|NP_147604.2| - 2.1e-06 27.3 0.4 0.00012 21.6 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.7 gi|118431262|ref|NP_147604.2| - 0.083 11.9 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein PTS_IIB PF02302.12 gi|118431262|ref|NP_147604.2| - 0.21 12.0 1.3 47 4.5 0.0 3.3 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit DUF35 PF01796.12 gi|118431263|ref|NP_147605.2| - 6.3e-10 39.1 0.7 1e-09 38.5 0.5 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|118431263|ref|NP_147605.2| - 4.9e-08 32.6 0.0 1.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2507 PF10702.4 gi|118431263|ref|NP_147605.2| - 0.14 11.8 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2507) TP_methylase PF00590.15 gi|14601080|ref|NP_147606.1| - 3e-16 59.7 1.1 4e-16 59.3 0.8 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|118431264|ref|NP_147607.2| - 1.1e-09 38.7 0.0 2.9e-09 37.3 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|118431264|ref|NP_147607.2| - 0.082 12.4 2.8 1.2 8.6 2.6 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) AP_endonuc_2 PF01261.19 gi|118431264|ref|NP_147607.2| - 0.084 12.1 0.0 0.21 10.8 0.0 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF1049 PF06305.6 gi|14601083|ref|NP_147609.1| - 0.086 12.3 0.5 0.17 11.3 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) Pyr_redox_2 PF07992.9 gi|14601084|ref|NP_147610.1| - 1.2e-18 67.6 0.0 3.8e-18 66.0 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|14601084|ref|NP_147610.1| - 1.6e-10 41.4 0.3 0.00036 20.6 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|14601084|ref|NP_147610.1| - 7.1e-08 32.3 1.0 1.7e-07 31.1 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|14601084|ref|NP_147610.1| - 5.3e-05 23.5 1.2 0.0053 17.1 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|14601084|ref|NP_147610.1| - 0.0002 19.9 0.3 0.00045 18.8 0.2 1.5 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|14601084|ref|NP_147610.1| - 0.0008 18.5 0.1 0.0014 17.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|14601084|ref|NP_147610.1| - 0.0011 17.9 3.8 0.003 16.5 0.1 2.4 2 1 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|14601084|ref|NP_147610.1| - 0.0016 17.3 0.2 0.014 14.2 0.1 2.4 2 1 1 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|14601084|ref|NP_147610.1| - 0.0021 17.6 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|14601084|ref|NP_147610.1| - 0.0039 16.5 0.1 0.03 13.6 0.1 2.1 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|14601084|ref|NP_147610.1| - 0.035 14.1 0.0 6.5 6.7 0.0 2.6 2 1 0 2 2 2 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|14601084|ref|NP_147610.1| - 0.051 12.7 0.1 0.17 11.0 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|14601084|ref|NP_147610.1| - 0.058 12.4 0.1 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.13 gi|14601084|ref|NP_147610.1| - 0.059 13.0 0.2 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|14601084|ref|NP_147610.1| - 0.069 13.4 0.1 2.4 8.4 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|14601084|ref|NP_147610.1| - 0.12 12.1 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.17 gi|14601084|ref|NP_147610.1| - 0.16 10.7 1.6 1.1 8.0 0.4 2.2 1 1 0 2 2 2 0 Glucose inhibited division protein A APH PF01636.18 gi|118431265|ref|NP_147611.2| - 3.6e-09 36.7 0.2 6.6e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.6 gi|118431265|ref|NP_147611.2| - 0.00021 20.6 0.0 0.00027 20.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|118431265|ref|NP_147611.2| - 0.028 13.4 0.0 0.12 11.4 0.0 1.9 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF504 PF04457.7 gi|14601086|ref|NP_147612.1| - 1.2e-15 57.3 2.7 1.8e-15 56.8 1.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) BPD_transp_1 PF00528.17 gi|14601088|ref|NP_147614.1| - 2.8e-12 46.5 15.7 2.8e-12 46.5 10.9 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|14601089|ref|NP_147615.1| - 1e-12 47.9 20.0 1e-12 47.9 13.8 2.2 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|118431266|ref|NP_147616.2| - 3.2e-34 118.1 0.0 4.6e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431266|ref|NP_147616.2| - 3.2e-13 50.2 0.0 5.3e-08 33.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|118431266|ref|NP_147616.2| - 1e-12 47.8 0.6 2.7e-12 46.4 0.4 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|118431266|ref|NP_147616.2| - 2.3e-06 27.0 0.0 0.0052 16.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|118431266|ref|NP_147616.2| - 9.1e-05 21.6 0.0 0.017 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|118431266|ref|NP_147616.2| - 0.00016 21.1 0.0 0.02 14.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|118431266|ref|NP_147616.2| - 0.00043 19.9 0.0 0.0012 18.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|118431266|ref|NP_147616.2| - 0.00052 20.0 0.1 0.00098 19.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|118431266|ref|NP_147616.2| - 0.00066 19.8 0.4 0.01 15.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|118431266|ref|NP_147616.2| - 0.00067 20.0 0.0 0.00094 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|118431266|ref|NP_147616.2| - 0.00083 18.8 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TOBE PF03459.12 gi|118431266|ref|NP_147616.2| - 0.0015 18.6 0.1 0.0039 17.2 0.1 1.7 1 0 0 1 1 1 1 TOBE domain Arch_ATPase PF01637.13 gi|118431266|ref|NP_147616.2| - 0.0021 17.8 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|118431266|ref|NP_147616.2| - 0.0026 17.9 0.3 0.017 15.3 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|118431266|ref|NP_147616.2| - 0.0067 15.9 0.8 0.077 12.4 0.2 2.0 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|118431266|ref|NP_147616.2| - 0.016 14.3 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|118431266|ref|NP_147616.2| - 0.018 13.7 0.0 0.024 13.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|118431266|ref|NP_147616.2| - 0.023 14.3 0.5 0.046 13.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|118431266|ref|NP_147616.2| - 0.038 13.5 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|118431266|ref|NP_147616.2| - 0.086 13.6 0.3 0.35 11.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|118431266|ref|NP_147616.2| - 0.14 11.8 0.3 0.41 10.3 0.1 1.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|118431266|ref|NP_147616.2| - 0.15 12.0 0.3 1.7 8.5 0.1 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|118431266|ref|NP_147616.2| - 0.15 11.9 0.1 0.34 10.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.10 gi|118431266|ref|NP_147616.2| - 0.18 11.4 0.0 0.43 10.2 0.0 1.6 1 0 0 1 1 1 0 NTPase KaiC PF06745.8 gi|118431266|ref|NP_147616.2| - 0.2 10.7 0.2 0.47 9.5 0.0 1.5 2 0 0 2 2 2 0 KaiC SBP_bac_8 PF13416.1 gi|118431267|ref|NP_147617.2| - 9.9e-36 123.9 0.0 1.3e-35 123.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|118431267|ref|NP_147617.2| - 1.2e-25 90.2 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|118431267|ref|NP_147617.2| - 8.1e-24 84.9 0.0 1.1e-23 84.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|118431267|ref|NP_147617.2| - 7e-08 32.3 0.0 4.5e-07 29.7 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PrpR_N PF06506.6 gi|118431267|ref|NP_147617.2| - 0.048 13.0 0.1 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator SP_C-Propep PF08999.5 gi|118431267|ref|NP_147617.2| - 0.18 11.2 2.7 3.7 7.0 0.2 2.4 2 0 0 2 2 2 0 Surfactant protein C, N terminal propeptide DUF3040 PF11239.3 gi|118431267|ref|NP_147617.2| - 5.3 7.1 8.1 1.1 9.3 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) Fer2_3 PF13085.1 gi|14601092|ref|NP_147618.1| - 4e-34 116.7 0.0 8.4e-34 115.7 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.1 gi|14601092|ref|NP_147618.1| - 7.2e-09 35.9 1.7 0.0038 17.6 0.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|14601092|ref|NP_147618.1| - 1.4e-07 31.4 0.6 1.4e-07 31.4 0.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|14601092|ref|NP_147618.1| - 7.5e-07 29.4 1.8 1.1e-06 28.8 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|14601092|ref|NP_147618.1| - 1.6e-06 27.7 3.3 2.2e-06 27.3 0.2 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|14601092|ref|NP_147618.1| - 6.7e-06 26.3 5.5 7.1e-06 26.3 1.1 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|14601092|ref|NP_147618.1| - 1.2e-05 24.6 1.4 1.2e-05 24.6 0.9 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.22 gi|14601092|ref|NP_147618.1| - 3.7e-05 23.3 0.4 3.7e-05 23.3 0.3 2.4 2 1 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_2 PF12797.2 gi|14601092|ref|NP_147618.1| - 5.1e-05 22.9 1.1 5.1e-05 22.9 0.8 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2_4 PF13510.1 gi|14601092|ref|NP_147618.1| - 0.00012 21.8 0.2 0.00022 20.9 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|14601092|ref|NP_147618.1| - 0.00022 20.9 0.9 0.00022 20.9 0.6 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|14601092|ref|NP_147618.1| - 0.00052 20.1 0.7 0.00052 20.1 0.5 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|14601092|ref|NP_147618.1| - 0.005 17.5 4.4 0.036 14.7 0.3 3.0 3 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|14601092|ref|NP_147618.1| - 0.012 15.3 0.3 0.012 15.3 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|14601092|ref|NP_147618.1| - 0.019 15.2 10.3 0.037 14.2 1.3 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|14601092|ref|NP_147618.1| - 0.022 15.3 0.2 0.022 15.3 0.2 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|14601092|ref|NP_147618.1| - 0.039 14.3 1.4 0.039 14.3 1.0 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain BRX PF08381.6 gi|14601092|ref|NP_147618.1| - 0.11 11.6 0.1 0.19 10.7 0.1 1.3 1 0 0 1 1 1 0 Transcription factor regulating root and shoot growth via Pin3 Fer4_3 PF12798.2 gi|14601092|ref|NP_147618.1| - 8 7.2 23.8 0.31 11.7 3.9 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|14601093|ref|NP_147619.1| - 2.2e-07 30.7 9.6 2.7e-07 30.4 6.7 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.17 gi|118431268|ref|NP_147620.2| - 2e-12 47.0 4.4 3.5e-12 46.2 2.8 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|118431268|ref|NP_147620.2| - 0.031 14.3 6.2 0.52 10.4 4.3 2.1 1 1 0 1 1 1 0 Ferric reductase like transmembrane component SecG PF03840.9 gi|118431268|ref|NP_147620.2| - 0.21 11.3 5.2 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 Preprotein translocase SecG subunit Ni_hydr_CYTB PF01292.15 gi|118431268|ref|NP_147620.2| - 2.8 7.2 8.7 4.9 6.5 6.1 1.4 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 FAD_binding_2 PF00890.19 gi|118431269|ref|NP_147621.2| - 2.2e-108 362.8 0.1 2.7e-108 362.5 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|118431269|ref|NP_147621.2| - 1.3e-43 147.9 0.3 2e-43 147.3 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|118431269|ref|NP_147621.2| - 6e-06 26.2 0.1 0.029 14.2 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|118431269|ref|NP_147621.2| - 0.0012 18.0 0.2 0.045 12.8 0.1 2.2 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|118431269|ref|NP_147621.2| - 0.0031 16.4 2.2 0.009 14.9 0.8 2.2 2 1 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|118431269|ref|NP_147621.2| - 0.012 14.0 0.0 1.8 6.9 0.0 2.4 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_8 PF13450.1 gi|118431269|ref|NP_147621.2| - 0.058 13.4 0.6 0.54 10.3 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|118431269|ref|NP_147621.2| - 0.095 11.5 0.1 0.29 9.9 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A GCV_H PF01597.14 gi|118431270|ref|NP_147622.2| - 1.2e-47 160.6 0.2 1.5e-47 160.3 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|118431270|ref|NP_147622.2| - 5e-06 26.0 0.4 1.2e-05 24.8 0.3 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|118431270|ref|NP_147622.2| - 0.0001 21.9 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2505 PF10698.4 gi|118431270|ref|NP_147622.2| - 0.062 12.7 0.0 0.089 12.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) OMPdecase PF00215.19 gi|118431271|ref|NP_147623.2| - 8.9e-25 87.4 3.4 1e-24 87.2 2.4 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|118431271|ref|NP_147623.2| - 4.5e-05 22.6 0.1 0.00047 19.3 0.1 2.2 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.16 gi|118431271|ref|NP_147623.2| - 7.5e-05 22.0 0.4 0.00012 21.4 0.1 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein TIM-br_sig_trns PF09370.5 gi|118431271|ref|NP_147623.2| - 0.021 13.9 0.2 0.29 10.1 0.0 2.3 1 1 1 2 2 2 0 TIM-barrel signal transduction protein PcrB PF01884.12 gi|118431271|ref|NP_147623.2| - 0.075 12.2 3.0 0.081 12.1 0.1 2.0 2 0 0 2 2 2 0 PcrB family Creatininase PF02633.9 gi|14601098|ref|NP_147624.1| - 9.7e-45 152.4 0.0 1.1e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase Ion_trans_2 PF07885.11 gi|14601099|ref|NP_147625.1| - 1.7e-17 62.9 5.4 4.5e-17 61.5 3.7 1.7 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.26 gi|14601099|ref|NP_147625.1| - 6.5e-14 51.6 6.5 1.1e-13 50.8 4.5 1.4 1 0 0 1 1 1 1 Ion transport protein DUF3008 PF11450.3 gi|14601099|ref|NP_147625.1| - 0.048 13.8 0.0 0.14 12.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknwon function (DUF3008) DUF91 PF01939.11 gi|14601101|ref|NP_147627.1| - 6.5e-44 149.7 0.0 8.2e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1052 PF06319.7 gi|14601101|ref|NP_147627.1| - 0.05 12.8 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) LSM PF01423.17 gi|118431273|ref|YP_874866.1| - 2.2e-16 59.1 0.2 2.7e-16 58.8 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|118431273|ref|YP_874866.1| - 0.0058 16.5 0.0 0.0072 16.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF1615 PF07759.7 gi|118431273|ref|YP_874866.1| - 0.059 12.1 0.0 0.061 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DNA_binding_1 PF01035.15 gi|14601102|ref|NP_147629.1| - 3.6e-26 90.7 0.0 5.6e-26 90.1 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_15 PF12324.3 gi|14601102|ref|NP_147629.1| - 0.025 14.2 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase AAA PF00004.24 gi|14601103|ref|NP_147630.1| - 1.5e-39 135.1 0.0 5.6e-39 133.3 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|14601103|ref|NP_147630.1| - 2e-10 40.4 3.0 2e-10 40.4 2.1 1.7 2 0 0 2 2 1 1 MIT (microtubule interacting and transport) domain AAA_22 PF13401.1 gi|14601103|ref|NP_147630.1| - 6.2e-08 32.8 0.0 2.1e-05 24.6 0.0 3.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|14601103|ref|NP_147630.1| - 8.5e-08 32.3 0.0 0.00055 19.9 0.0 3.3 1 1 1 3 3 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|14601103|ref|NP_147630.1| - 1.9e-07 31.0 0.0 2.7e-06 27.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|14601103|ref|NP_147630.1| - 3.5e-07 30.0 0.0 7.3e-06 25.7 0.0 2.3 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_5 PF07728.9 gi|14601103|ref|NP_147630.1| - 1.5e-06 27.9 0.0 5.4e-05 22.9 0.0 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|14601103|ref|NP_147630.1| - 1.7e-06 28.0 0.0 3.2e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|14601103|ref|NP_147630.1| - 7.6e-06 26.7 0.9 3.1e-05 24.7 0.1 2.4 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|14601103|ref|NP_147630.1| - 8.5e-06 24.9 0.0 0.00014 20.9 0.0 2.5 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|14601103|ref|NP_147630.1| - 7.4e-05 22.2 0.7 0.0084 15.5 0.1 2.6 2 1 1 3 3 2 1 AAA domain TIP49 PF06068.8 gi|14601103|ref|NP_147630.1| - 0.00016 20.5 0.0 0.00055 18.7 0.0 1.9 1 1 0 1 1 1 1 TIP49 C-terminus AAA_33 PF13671.1 gi|14601103|ref|NP_147630.1| - 0.0004 20.2 0.0 0.001 18.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|14601103|ref|NP_147630.1| - 0.00042 19.4 0.0 0.0021 17.1 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin TPR_11 PF13414.1 gi|14601103|ref|NP_147630.1| - 0.00045 19.8 1.2 0.0011 18.5 0.8 1.7 1 0 0 1 1 1 1 TPR repeat Arch_ATPase PF01637.13 gi|14601103|ref|NP_147630.1| - 0.00046 19.9 0.1 0.71 9.5 0.0 2.7 1 1 1 2 2 2 2 Archaeal ATPase RNA_helicase PF00910.17 gi|14601103|ref|NP_147630.1| - 0.00094 19.3 0.0 0.0066 16.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.16 gi|14601103|ref|NP_147630.1| - 0.0017 17.5 0.1 0.0041 16.3 0.0 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|14601103|ref|NP_147630.1| - 0.0023 17.6 0.0 0.0093 15.7 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain KaiC PF06745.8 gi|14601103|ref|NP_147630.1| - 0.0025 16.9 0.1 1.1 8.3 0.0 2.7 2 1 1 3 3 3 1 KaiC IstB_IS21 PF01695.12 gi|14601103|ref|NP_147630.1| - 0.0026 17.2 0.0 0.0045 16.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|14601103|ref|NP_147630.1| - 0.0046 17.2 1.2 0.018 15.3 0.1 2.7 2 1 1 3 3 2 1 AAA domain AAA_24 PF13479.1 gi|14601103|ref|NP_147630.1| - 0.01 15.4 0.0 0.034 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|14601103|ref|NP_147630.1| - 0.013 14.9 0.0 7.3 5.9 0.0 3.1 2 1 0 3 3 3 0 AAA-like domain AAA_28 PF13521.1 gi|14601103|ref|NP_147630.1| - 0.015 15.2 0.1 0.046 13.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|14601103|ref|NP_147630.1| - 0.019 14.6 0.0 0.041 13.5 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.12 gi|14601103|ref|NP_147630.1| - 0.019 13.8 0.0 0.037 12.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|14601103|ref|NP_147630.1| - 0.021 14.2 0.0 0.094 12.1 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF2075 PF09848.4 gi|14601103|ref|NP_147630.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|14601103|ref|NP_147630.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|14601103|ref|NP_147630.1| - 0.061 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|14601103|ref|NP_147630.1| - 0.067 12.0 0.0 0.14 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TPR_6 PF13174.1 gi|14601103|ref|NP_147630.1| - 0.099 13.1 1.2 0.72 10.4 0.1 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat NB-ARC PF00931.17 gi|14601103|ref|NP_147630.1| - 0.1 11.4 0.0 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.11 gi|14601103|ref|NP_147630.1| - 0.14 11.3 0.0 0.32 10.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.1 gi|14601103|ref|NP_147630.1| - 0.16 11.5 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TPR_2 PF07719.12 gi|14601103|ref|NP_147630.1| - 0.49 10.4 4.5 0.68 9.9 0.4 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|14601103|ref|NP_147630.1| - 0.85 9.5 4.0 0.6 10.0 0.3 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|14601103|ref|NP_147630.1| - 1.4 8.6 5.3 0.31 10.7 0.9 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat MarR_2 PF12802.2 gi|118431274|ref|YP_874867.1| - 2.6e-06 26.9 0.5 3.1e-05 23.5 0.1 2.8 3 0 0 3 3 2 1 MarR family TrmB PF01978.14 gi|118431274|ref|YP_874867.1| - 8.3e-05 22.2 0.5 0.00024 20.7 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|118431274|ref|YP_874867.1| - 0.00012 21.4 0.2 0.0003 20.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|118431274|ref|YP_874867.1| - 0.00066 19.5 0.1 0.0014 18.4 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|118431274|ref|YP_874867.1| - 0.00075 19.5 1.4 0.0028 17.7 0.1 2.6 3 0 0 3 3 3 1 Transcriptional regulator RPA_C PF08784.6 gi|118431274|ref|YP_874867.1| - 0.0028 18.0 0.1 0.27 11.6 0.0 2.4 2 0 0 2 2 2 1 Replication protein A C terminal HTH_Crp_2 PF13545.1 gi|118431274|ref|YP_874867.1| - 0.0042 16.8 0.2 0.012 15.3 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|118431274|ref|YP_874867.1| - 0.0061 16.8 0.2 0.049 13.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|118431274|ref|YP_874867.1| - 0.0068 15.7 0.3 0.0068 15.7 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding UBA_3 PF09288.5 gi|118431274|ref|YP_874867.1| - 0.0093 15.5 1.2 0.22 11.1 0.1 2.9 3 0 0 3 3 3 1 Fungal ubiquitin-associated domain LexA_DNA_bind PF01726.11 gi|118431274|ref|YP_874867.1| - 0.01 15.3 0.2 0.039 13.5 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain DDRGK PF09756.4 gi|118431274|ref|YP_874867.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain IF2_N PF04760.10 gi|118431274|ref|YP_874867.1| - 0.013 15.1 0.1 0.059 13.0 0.0 2.2 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region PaaX PF07848.7 gi|118431274|ref|YP_874867.1| - 0.015 15.3 1.0 0.088 12.8 0.1 2.4 2 0 0 2 2 2 0 PaaX-like protein MarR PF01047.17 gi|118431274|ref|YP_874867.1| - 0.025 14.2 0.0 0.067 12.9 0.0 1.7 1 0 0 1 1 1 0 MarR family UME PF08064.8 gi|118431274|ref|YP_874867.1| - 0.028 14.3 0.3 0.14 12.1 0.2 2.2 1 1 1 2 2 2 0 UME (NUC010) domain HTH_CodY PF08222.6 gi|118431274|ref|YP_874867.1| - 0.055 12.8 0.8 0.13 11.5 0.5 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_10 PF04967.7 gi|118431274|ref|YP_874867.1| - 0.062 12.8 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain EAP30 PF04157.11 gi|118431274|ref|YP_874867.1| - 0.09 11.9 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family Methyltransf_26 PF13659.1 gi|118431275|ref|NP_147631.2| - 3.3e-14 52.9 0.0 6e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|118431275|ref|NP_147631.2| - 3.6e-07 29.7 0.0 6.2e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|118431275|ref|NP_147631.2| - 7.1e-07 29.8 0.0 1.3e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118431275|ref|NP_147631.2| - 3.1e-06 26.6 0.0 4.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.6 gi|118431275|ref|NP_147631.2| - 0.00054 19.6 0.0 0.0012 18.5 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Spermine_synth PF01564.12 gi|118431275|ref|NP_147631.2| - 0.00063 18.7 0.0 0.00096 18.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase PrmA PF06325.8 gi|118431275|ref|NP_147631.2| - 0.00083 18.5 0.1 0.0011 18.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|118431275|ref|NP_147631.2| - 0.0012 19.2 0.0 0.015 15.7 0.0 2.4 1 1 1 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|118431275|ref|NP_147631.2| - 0.0059 16.2 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein DUF4213 PF13938.1 gi|118431275|ref|NP_147631.2| - 0.014 15.5 0.1 0.072 13.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4213) Ubie_methyltran PF01209.13 gi|118431275|ref|NP_147631.2| - 0.034 13.2 0.0 1.3 8.0 0.0 2.3 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.1 gi|118431275|ref|NP_147631.2| - 0.061 14.1 0.0 0.11 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|118431275|ref|NP_147631.2| - 0.067 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|118431275|ref|NP_147631.2| - 0.078 13.3 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|118431275|ref|NP_147631.2| - 0.14 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 EamA PF00892.15 gi|118431276|ref|NP_147632.2| - 9.6e-21 74.1 23.3 9.5e-13 48.2 8.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|118431276|ref|NP_147632.2| - 0.0011 19.2 23.4 0.018 15.2 0.6 3.4 1 1 2 3 3 3 2 Multidrug resistance efflux transporter Sugar_transport PF06800.7 gi|118431276|ref|NP_147632.2| - 0.0025 16.9 4.5 0.21 10.6 0.1 2.3 1 1 1 2 2 2 2 Sugar transport protein Metallophos PF00149.23 gi|118431277|ref|NP_147633.2| - 9.6e-18 64.2 2.1 1.4e-17 63.7 1.4 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|118431277|ref|NP_147633.2| - 1.9e-05 24.5 0.0 5e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Mucin PF01456.12 gi|118431277|ref|NP_147633.2| - 0.0017 18.1 30.4 0.0044 16.7 21.1 1.6 1 0 0 1 1 1 1 Mucin-like glycoprotein DUF945 PF06097.6 gi|118431277|ref|NP_147633.2| - 0.068 11.9 0.0 0.068 11.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF945) AJAP1_PANP_C PF15298.1 gi|118431277|ref|NP_147633.2| - 1.4 8.7 17.0 2.2 8.1 11.8 1.2 1 0 0 1 1 1 0 AJAP1/PANP C-terminus ABC_transp_aux PF09822.4 gi|118431278|ref|NP_147635.2| - 0.00033 20.1 0.6 0.0043 16.5 0.0 2.3 2 1 0 2 2 2 1 ABC-type uncharacterized transport system Rifin_STEVOR PF02009.11 gi|118431278|ref|NP_147635.2| - 0.097 12.2 3.9 0.14 11.7 2.7 1.2 1 0 0 1 1 1 0 Rifin/stevor family SSF PF00474.12 gi|118431279|ref|NP_147637.2| - 1.2e-22 80.1 30.4 2e-22 79.4 21.1 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1152 PF06626.7 gi|118431280|ref|NP_147638.2| - 1.1e-114 382.5 1.7 1.3e-114 382.3 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) FliD_C PF07195.7 gi|118431281|ref|YP_874868.1| - 0.00066 19.0 0.2 0.00088 18.6 0.1 1.1 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus RHH_1 PF01402.16 gi|118431281|ref|YP_874868.1| - 0.003 17.3 0.1 0.019 14.8 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Lzipper-MIP1 PF14389.1 gi|118431281|ref|YP_874868.1| - 0.019 15.0 0.5 0.044 13.8 0.3 1.7 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 IF2_N PF04760.10 gi|118431281|ref|YP_874868.1| - 0.092 12.4 0.1 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region IncA PF04156.9 gi|118431281|ref|YP_874868.1| - 0.18 11.3 2.5 0.19 11.2 1.2 1.3 2 0 0 2 2 2 0 IncA protein RHH_1 PF01402.16 gi|118431282|ref|YP_874869.1| - 1.1e-11 44.1 3.0 1.3e-11 43.8 2.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|118431282|ref|YP_874869.1| - 1.2e-06 28.0 3.4 1.5e-06 27.8 2.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.6 gi|118431282|ref|YP_874869.1| - 0.0019 18.8 0.0 0.002 18.7 0.0 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor RHH_4 PF13467.1 gi|118431282|ref|YP_874869.1| - 0.0037 17.0 0.0 0.0041 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain RepB-RCR_reg PF10723.4 gi|118431282|ref|YP_874869.1| - 0.027 14.2 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB DUF2191 PF09957.4 gi|118431282|ref|YP_874869.1| - 0.036 13.8 1.9 0.089 12.6 1.3 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) Sda PF08970.5 gi|118431282|ref|YP_874869.1| - 0.67 9.4 4.0 0.99 8.9 0.2 2.1 1 1 1 2 2 2 0 Sporulation inhibitor A HrcA_DNA-bdg PF03444.10 gi|118431283|ref|NP_147639.2| - 1.7e-35 120.2 1.3 2.7e-35 119.6 0.1 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|118431283|ref|NP_147639.2| - 2.6e-29 100.7 1.7 4.8e-15 55.0 0.1 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|118431283|ref|NP_147639.2| - 8.3e-08 32.2 0.1 1.7e-07 31.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Pro-kuma_activ PF09286.6 gi|118431283|ref|NP_147639.2| - 0.00011 22.2 0.0 0.074 13.0 0.0 2.2 2 0 0 2 2 2 2 Pro-kumamolisin, activation domain HTH_11 PF08279.7 gi|118431283|ref|NP_147639.2| - 0.00032 20.2 0.1 0.0013 18.3 0.0 2.1 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|118431283|ref|NP_147639.2| - 0.00058 19.5 0.6 0.02 14.5 0.1 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|118431283|ref|NP_147639.2| - 0.0035 17.2 3.0 0.0053 16.6 0.4 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TusA PF01206.12 gi|118431283|ref|NP_147639.2| - 0.014 15.0 0.0 0.096 12.3 0.0 2.4 2 0 0 2 2 2 0 Sulfurtransferase TusA HlyD_3 PF13437.1 gi|118431283|ref|NP_147639.2| - 0.014 15.7 0.6 0.026 14.8 0.1 1.6 2 0 0 2 2 1 0 HlyD family secretion protein Penicillinase_R PF03965.11 gi|118431283|ref|NP_147639.2| - 0.017 15.1 0.3 0.16 12.0 0.1 2.3 1 1 1 2 2 2 0 Penicillinase repressor GntR PF00392.16 gi|118431283|ref|NP_147639.2| - 0.021 14.2 0.6 0.099 12.0 0.1 2.3 2 1 1 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|118431283|ref|NP_147639.2| - 0.038 14.3 0.1 0.12 12.7 0.0 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|118431283|ref|NP_147639.2| - 0.078 12.5 0.1 0.75 9.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|118431283|ref|NP_147639.2| - 0.094 12.1 0.3 0.65 9.5 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|118431283|ref|NP_147639.2| - 0.1 12.2 0.1 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 MarR family Sigma70_r3 PF04539.11 gi|118431283|ref|NP_147639.2| - 0.12 12.2 0.0 0.5 10.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 DUF2192 PF09958.4 gi|14601113|ref|NP_147640.1| - 2.5e-91 305.0 0.5 2.8e-91 304.8 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) GSAP-16 PF14959.1 gi|14601113|ref|NP_147640.1| - 0.0087 15.8 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 gamma-Secretase-activating protein C-term DUF1342 PF07072.6 gi|14601113|ref|NP_147640.1| - 0.014 15.0 0.0 0.54 9.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1342) KOW PF00467.24 gi|118431284|ref|NP_147641.2| - 2e-05 24.0 1.9 3.3e-05 23.4 0.5 2.0 1 1 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|118431284|ref|NP_147641.2| - 0.0029 17.9 0.0 0.0044 17.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 Cytidylate_kin2 PF13189.1 gi|118431285|ref|NP_147642.2| - 1.5e-21 77.0 0.1 1.5e-19 70.5 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|118431285|ref|NP_147642.2| - 6.2e-14 52.8 0.1 8.7e-14 52.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118431285|ref|NP_147642.2| - 7.4e-14 52.1 0.0 1.3e-13 51.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|118431285|ref|NP_147642.2| - 1.7e-09 37.7 0.1 3e-09 36.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|118431285|ref|NP_147642.2| - 4.7e-08 33.0 0.1 7.9e-08 32.3 0.0 1.4 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|118431285|ref|NP_147642.2| - 1.1e-05 25.3 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|118431285|ref|NP_147642.2| - 0.00029 20.8 0.8 0.0019 18.2 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|118431285|ref|NP_147642.2| - 0.00063 19.8 0.1 0.0019 18.3 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|118431285|ref|NP_147642.2| - 0.0013 18.9 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|118431285|ref|NP_147642.2| - 0.0021 17.7 0.2 0.06 13.1 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|118431285|ref|NP_147642.2| - 0.0025 17.9 0.0 0.004 17.3 0.0 1.3 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.7 gi|118431285|ref|NP_147642.2| - 0.003 17.2 0.0 0.019 14.6 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.2 gi|118431285|ref|NP_147642.2| - 0.0041 16.6 0.0 0.0041 16.6 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|118431285|ref|NP_147642.2| - 0.0073 16.3 0.1 0.011 15.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.5 gi|118431285|ref|NP_147642.2| - 0.014 14.6 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|118431285|ref|NP_147642.2| - 0.02 14.6 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 NTPase CoaE PF01121.15 gi|118431285|ref|NP_147642.2| - 0.026 13.9 0.2 4.9 6.5 0.1 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase E3_binding PF02817.12 gi|118431285|ref|NP_147642.2| - 0.027 14.0 0.9 41 3.9 0.0 3.6 3 0 0 3 3 3 0 e3 binding domain AAA_5 PF07728.9 gi|118431285|ref|NP_147642.2| - 0.028 14.1 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|118431285|ref|NP_147642.2| - 0.029 13.0 0.0 0.037 12.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|118431285|ref|NP_147642.2| - 0.036 13.1 0.0 0.087 11.8 0.0 1.7 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|118431285|ref|NP_147642.2| - 0.045 13.1 0.4 0.46 9.8 0.0 2.0 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|118431285|ref|NP_147642.2| - 0.048 12.7 0.0 0.1 11.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin CobU PF02283.11 gi|118431285|ref|NP_147642.2| - 0.071 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Mg_chelatase PF01078.16 gi|118431285|ref|NP_147642.2| - 0.075 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|118431285|ref|NP_147642.2| - 0.084 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATP_bind_1 PF03029.12 gi|118431285|ref|NP_147642.2| - 0.086 12.3 0.1 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Ribosomal_L34e PF01199.13 gi|118431286|ref|YP_874870.1| - 1.7e-31 108.3 2.9 1.8e-31 108.2 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Zn_ribbon_recom PF13408.1 gi|118431286|ref|YP_874870.1| - 0.57 10.4 3.8 2.9 8.2 2.8 1.9 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Amidase PF01425.16 gi|118431287|ref|NP_147644.2| - 3e-24 85.7 4.3 1.2e-23 83.7 3.0 1.8 1 1 0 1 1 1 1 Amidase Pox_A9 PF04835.7 gi|14601117|ref|NP_147645.1| - 0.035 14.0 0.4 0.035 14.0 0.3 2.0 3 0 0 3 3 3 0 A9 protein conserved region DUF106 PF01956.11 gi|14601117|ref|NP_147645.1| - 0.078 12.5 0.0 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 Integral membrane protein DUF106 CopD PF05425.8 gi|14601117|ref|NP_147645.1| - 0.22 11.7 3.8 2.8 8.1 2.6 2.2 1 1 0 1 1 1 0 Copper resistance protein D AAA_18 PF13238.1 gi|118431288|ref|NP_147646.2| - 4.9e-14 52.7 0.0 7e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118431288|ref|NP_147646.2| - 9.1e-08 32.9 0.1 1.2e-07 32.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|118431288|ref|NP_147646.2| - 4.5e-06 26.7 0.0 6.8e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431288|ref|NP_147646.2| - 2.3e-05 24.4 0.1 3.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|118431288|ref|NP_147646.2| - 2.3e-05 23.9 0.3 2.8e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|118431288|ref|NP_147646.2| - 2.8e-05 23.4 0.1 4.5e-05 22.8 0.1 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|118431288|ref|NP_147646.2| - 3.9e-05 23.3 0.2 0.00034 20.2 0.1 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|118431288|ref|NP_147646.2| - 0.00011 21.8 4.6 0.00078 19.1 0.1 3.3 2 1 0 2 2 2 1 Part of AAA domain NTPase_1 PF03266.10 gi|118431288|ref|NP_147646.2| - 0.00021 21.0 1.8 0.00047 19.9 0.7 1.9 3 0 0 3 3 3 1 NTPase MobB PF03205.9 gi|118431288|ref|NP_147646.2| - 0.00023 20.8 0.4 0.0067 16.1 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|118431288|ref|NP_147646.2| - 0.00046 19.0 1.4 0.00046 19.0 0.2 1.6 2 0 0 2 2 2 1 ArgK protein AAA_30 PF13604.1 gi|118431288|ref|NP_147646.2| - 0.00093 18.8 0.3 0.00093 18.8 0.2 2.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|118431288|ref|NP_147646.2| - 0.00096 19.2 0.4 0.0029 17.7 0.3 1.9 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|118431288|ref|NP_147646.2| - 0.0011 18.4 0.1 0.0017 17.9 0.1 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.1 gi|118431288|ref|NP_147646.2| - 0.0029 17.4 0.9 0.0084 15.9 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118431288|ref|NP_147646.2| - 0.0041 17.3 0.6 0.0063 16.7 0.1 1.7 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|118431288|ref|NP_147646.2| - 0.0049 16.3 1.3 0.0077 15.6 0.2 1.8 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|118431288|ref|NP_147646.2| - 0.007 16.2 0.1 0.011 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain CPT PF07931.7 gi|118431288|ref|NP_147646.2| - 0.013 15.0 0.2 0.018 14.6 0.1 1.3 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.9 gi|118431288|ref|NP_147646.2| - 0.022 14.4 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|118431288|ref|NP_147646.2| - 0.025 14.5 0.3 0.062 13.2 0.2 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|118431288|ref|NP_147646.2| - 0.029 14.0 0.4 0.043 13.4 0.3 1.5 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|118431288|ref|NP_147646.2| - 0.03 14.6 0.1 0.032 14.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.7 gi|118431288|ref|NP_147646.2| - 0.033 13.2 0.7 0.11 11.5 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin Thymidylate_kin PF02223.12 gi|118431288|ref|NP_147646.2| - 0.036 13.4 0.1 4.2 6.7 0.1 2.4 2 0 0 2 2 2 0 Thymidylate kinase Arch_ATPase PF01637.13 gi|118431288|ref|NP_147646.2| - 0.043 13.5 0.1 0.068 12.8 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase KAP_NTPase PF07693.9 gi|118431288|ref|NP_147646.2| - 0.068 12.1 0.1 0.1 11.5 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain DUF258 PF03193.11 gi|118431288|ref|NP_147646.2| - 0.084 12.0 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_3 PF07726.6 gi|118431288|ref|NP_147646.2| - 0.088 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|118431288|ref|NP_147646.2| - 0.11 11.5 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|118431288|ref|NP_147646.2| - 0.14 11.0 0.2 0.19 10.5 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain Herpes_Helicase PF02689.9 gi|118431288|ref|NP_147646.2| - 0.14 9.8 0.0 0.19 9.4 0.0 1.2 1 0 0 1 1 1 0 Helicase Miro PF08477.8 gi|118431288|ref|NP_147646.2| - 0.14 12.6 0.1 0.34 11.4 0.0 1.7 2 0 0 2 2 2 0 Miro-like protein APS_kinase PF01583.15 gi|118431288|ref|NP_147646.2| - 0.33 10.6 1.6 0.79 9.3 0.2 2.3 2 1 0 2 2 2 0 Adenylylsulphate kinase SecY PF00344.15 gi|118431289|ref|NP_147647.2| - 1.2e-85 287.5 14.2 1.4e-85 287.2 9.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|118431289|ref|NP_147647.2| - 8.2e-12 44.4 1.0 3.1e-11 42.5 0.7 2.1 1 0 0 1 1 1 1 Plug domain of Sec61p PsbX PF06596.6 gi|118431289|ref|NP_147647.2| - 0.5 10.0 5.7 0.67 9.6 1.3 3.2 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) DHBP_synthase PF00926.14 gi|118431291|ref|NP_147649.2| - 2.4e-52 177.0 0.0 2.7e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.14 gi|14601122|ref|NP_147650.1| - 9e-12 44.8 0.2 1.1e-11 44.5 0.2 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase TruB_N PF01509.13 gi|118431292|ref|NP_147652.2| - 1.2e-25 90.4 0.1 5.2e-16 59.1 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|118431292|ref|NP_147652.2| - 2.9e-18 65.3 0.6 5.1e-18 64.5 0.4 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|118431292|ref|NP_147652.2| - 1.1e-16 60.5 0.3 2.5e-16 59.3 0.2 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PNP_UDP_1 PF01048.15 gi|118431293|ref|NP_147653.2| - 1.5e-36 125.5 0.1 1.7e-36 125.3 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HPS3_C PF14763.1 gi|14601126|ref|NP_147654.1| - 0.013 14.5 0.0 0.018 14.0 0.0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3, C-terminal DUF4147 PF13660.1 gi|118431294|ref|NP_147655.2| - 9e-75 250.8 0.0 1.3e-74 250.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|118431294|ref|NP_147655.2| - 3.4e-36 123.6 0.0 6.7e-36 122.6 0.0 1.5 1 0 0 1 1 1 1 MOFRL family LEA_2 PF03168.8 gi|118431296|ref|NP_147656.2| - 5.8e-12 45.8 0.0 7.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein DUF2029 PF09594.5 gi|118431297|ref|NP_147657.2| - 6.1e-10 39.0 42.7 6.1e-10 39.0 29.6 3.0 2 1 1 3 3 3 1 Protein of unknown function (DUF2029) Peptidase_M28 PF04389.12 gi|118431298|ref|NP_147659.2| - 2.9e-22 79.2 0.0 5.1e-22 78.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|118431298|ref|NP_147659.2| - 3e-06 26.8 0.1 9.8e-06 25.2 0.1 1.9 1 0 0 1 1 1 1 PA domain GvpH PF05455.6 gi|118431298|ref|NP_147659.2| - 0.1 12.2 0.1 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 GvpH zf-ribbon_3 PF13248.1 gi|118431299|ref|NP_147661.2| - 0.003 16.7 1.6 1.4 8.1 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|118431299|ref|NP_147661.2| - 0.0068 16.0 3.7 0.35 10.5 0.2 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|118431299|ref|NP_147661.2| - 0.011 15.2 1.3 2 8.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|118431299|ref|NP_147661.2| - 0.018 14.0 5.2 0.15 11.1 0.3 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com TF_Zn_Ribbon PF08271.7 gi|118431299|ref|NP_147661.2| - 0.018 14.3 1.5 0.17 11.2 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|118431299|ref|NP_147661.2| - 0.047 13.7 2.3 4.4 7.4 0.2 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.11 gi|118431299|ref|NP_147661.2| - 0.069 12.8 0.9 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|118431299|ref|NP_147661.2| - 0.1 12.4 0.3 0.24 11.2 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|118431299|ref|NP_147661.2| - 0.14 11.7 0.7 6 6.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431299|ref|NP_147661.2| - 0.22 11.2 7.3 1.7 8.3 0.7 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|118431299|ref|NP_147661.2| - 0.52 10.1 4.4 6.2 6.7 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|118431299|ref|NP_147661.2| - 1 8.9 5.8 11 5.6 0.3 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|118431299|ref|NP_147661.2| - 2.8 7.3 7.7 1.4 8.3 0.6 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-CCHC_5 PF14787.1 gi|118431299|ref|NP_147661.2| - 4.2 6.9 9.2 8.8 5.9 1.1 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Zn-ribbon_8 PF09723.5 gi|118431299|ref|NP_147661.2| - 6 6.9 5.9 9.5 6.2 0.1 2.6 3 0 0 3 3 3 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|14601135|ref|NP_147663.1| - 2.5e-09 36.6 0.4 4e-09 36.0 0.3 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|14601135|ref|NP_147663.1| - 5.1e-05 22.6 2.3 0.00059 19.2 2.0 2.1 1 1 1 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|14601135|ref|NP_147663.1| - 0.0013 17.8 0.9 0.0033 16.5 0.6 1.7 1 0 0 1 1 1 1 Transcription factor zinc-finger Nudix_N_2 PF14803.1 gi|14601135|ref|NP_147663.1| - 0.0016 18.0 3.7 0.0044 16.6 2.6 1.7 1 1 0 1 1 1 1 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|14601135|ref|NP_147663.1| - 0.0026 16.8 4.9 0.0081 15.3 3.4 1.8 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|14601135|ref|NP_147663.1| - 0.0034 17.1 0.3 0.0058 16.4 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|14601135|ref|NP_147663.1| - 0.0034 16.6 2.0 0.0097 15.2 1.4 1.8 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|14601135|ref|NP_147663.1| - 0.005 16.4 1.6 0.0056 16.3 0.3 1.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|14601135|ref|NP_147663.1| - 0.0097 15.8 0.5 0.019 14.8 0.3 1.6 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) Auto_anti-p27 PF06677.7 gi|14601135|ref|NP_147663.1| - 0.049 13.4 4.1 0.087 12.5 2.9 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|14601135|ref|NP_147663.1| - 0.055 12.9 4.7 0.66 9.5 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|14601135|ref|NP_147663.1| - 0.059 13.2 0.2 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 IBR domain Zn_Tnp_IS1595 PF12760.2 gi|14601135|ref|NP_147663.1| - 0.29 10.9 1.2 0.86 9.4 0.9 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|14601135|ref|NP_147663.1| - 0.5 10.6 7.5 17 5.7 5.2 2.6 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.5 gi|14601135|ref|NP_147663.1| - 0.65 9.5 3.6 6.2 6.4 2.5 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_S27 PF01599.14 gi|14601135|ref|NP_147663.1| - 1 9.2 3.4 3.6 7.4 2.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S27a zf-ISL3 PF14690.1 gi|14601135|ref|NP_147663.1| - 2.1 8.4 4.4 1.4 8.9 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1936 PF09151.5 gi|14601135|ref|NP_147663.1| - 3 7.4 5.1 8.1 6.0 3.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) UPF0547 PF10571.4 gi|14601135|ref|NP_147663.1| - 4.4 7.0 5.6 2.7 7.7 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|14601135|ref|NP_147663.1| - 7.6 6.4 6.6 0.95 9.3 0.4 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF371 PF04027.8 gi|118431300|ref|NP_147664.2| - 1.8e-49 166.7 0.0 2.1e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.14 gi|118431301|ref|NP_147666.2| - 1.4e-66 223.9 0.0 1.7e-66 223.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|118431301|ref|NP_147666.2| - 2.7e-11 43.2 0.0 3.7e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|118431301|ref|NP_147666.2| - 3.3e-10 40.5 0.0 6.7e-10 39.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|118431301|ref|NP_147666.2| - 2.3e-08 34.0 0.0 6e-08 32.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|118431301|ref|NP_147666.2| - 9.2e-07 28.1 0.0 1.3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|118431301|ref|NP_147666.2| - 8.7e-06 24.9 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.5 gi|118431301|ref|NP_147666.2| - 9.1e-06 25.3 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.9 gi|118431301|ref|NP_147666.2| - 1.1e-05 24.8 0.0 2.1e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|118431301|ref|NP_147666.2| - 1.5e-05 24.7 0.0 2.2e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|118431301|ref|NP_147666.2| - 1.5e-05 25.3 0.0 3.5e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|118431301|ref|NP_147666.2| - 0.00031 19.7 0.0 0.00043 19.2 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.1 gi|118431301|ref|NP_147666.2| - 0.00048 20.9 0.0 0.001 19.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|118431301|ref|NP_147666.2| - 0.0014 18.9 0.0 0.0024 18.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|118431301|ref|NP_147666.2| - 0.0024 17.0 0.0 0.0037 16.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|118431301|ref|NP_147666.2| - 0.0098 15.5 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Nol1_Nop2_Fmu PF01189.12 gi|118431301|ref|NP_147666.2| - 0.052 12.9 0.0 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family Methyltransf_23 PF13489.1 gi|118431301|ref|NP_147666.2| - 0.053 13.2 0.0 0.17 11.5 0.0 1.9 2 1 0 2 2 2 0 Methyltransferase domain FtsJ PF01728.14 gi|118431301|ref|NP_147666.2| - 0.06 13.3 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_21 PF05050.7 gi|118431301|ref|NP_147666.2| - 0.068 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase FkbM domain DREV PF05219.7 gi|118431301|ref|NP_147666.2| - 0.099 11.5 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase Cons_hypoth95 PF03602.10 gi|118431301|ref|NP_147666.2| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CMAS PF02353.15 gi|118431301|ref|NP_147666.2| - 0.15 11.1 0.0 0.2 10.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF1628 PF07790.6 gi|118431302|ref|NP_147667.2| - 4.4e-07 30.5 1.2 8.2e-07 29.6 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF461 PF04314.8 gi|118431302|ref|NP_147667.2| - 0.096 12.3 0.0 0.58 9.8 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF461) CBM_3 PF00942.13 gi|118431302|ref|NP_147667.2| - 0.098 12.6 0.2 0.24 11.4 0.1 1.7 1 0 0 1 1 1 0 Cellulose binding domain BACON PF13004.2 gi|118431302|ref|NP_147667.2| - 3 8.1 6.5 2.6e+02 1.9 4.5 2.4 1 1 0 1 1 1 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal TatD_DNase PF01026.16 gi|118431303|ref|NP_147668.2| - 3.3e-26 92.0 0.0 3.9e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DUF1978 PF09321.5 gi|118431303|ref|NP_147668.2| - 0.16 11.3 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) tRNA-synt_1 PF00133.17 gi|14601141|ref|NP_147669.1| - 1.3e-59 201.7 0.0 9.2e-41 139.5 0.0 2.8 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|14601141|ref|NP_147669.1| - 4.6e-27 94.6 0.0 3.1e-11 42.5 0.0 4.1 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|14601141|ref|NP_147669.1| - 3e-21 75.7 0.1 5.3e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|14601141|ref|NP_147669.1| - 2.5e-11 43.2 0.0 2.2e-09 36.8 0.0 2.3 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|14601141|ref|NP_147669.1| - 2.5e-08 33.4 0.0 0.00013 21.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain RecX PF02631.11 gi|14601141|ref|NP_147669.1| - 0.026 14.7 3.7 6 7.0 0.2 3.2 3 0 0 3 3 3 0 RecX family DUF3115 PF11312.3 gi|14601141|ref|NP_147669.1| - 0.041 12.7 0.1 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3115) Glyco_transf_4 PF13439.1 gi|14601141|ref|NP_147669.1| - 0.14 11.8 1.4 5.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 NAD_binding_10 PF13460.1 gi|14601141|ref|NP_147669.1| - 2.4 8.1 5.8 14 5.5 0.1 3.2 3 1 0 3 3 3 0 NADH(P)-binding DHDPS PF00701.17 gi|118431304|ref|NP_147671.2| - 4.7e-48 163.2 0.0 5.5e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_N PF02730.10 gi|118431304|ref|NP_147671.2| - 0.067 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain ABC_tran PF00005.22 gi|118431305|ref|NP_147673.2| - 2.5e-19 69.9 0.0 3.4e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431305|ref|NP_147673.2| - 1.7e-05 24.9 0.5 0.061 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|118431305|ref|NP_147673.2| - 0.00033 20.6 4.1 0.00056 19.9 0.2 2.0 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|118431305|ref|NP_147673.2| - 0.0015 18.3 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|118431305|ref|NP_147673.2| - 0.0024 17.9 0.3 0.19 11.8 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|118431305|ref|NP_147673.2| - 0.0031 17.0 0.1 0.73 9.2 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|118431305|ref|NP_147673.2| - 0.0039 16.6 0.1 0.0068 15.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|118431305|ref|NP_147673.2| - 0.0041 16.7 0.2 0.043 13.4 0.0 2.0 2 0 0 2 2 2 1 NACHT domain DUF3584 PF12128.3 gi|118431305|ref|NP_147673.2| - 0.006 14.0 0.1 0.0073 13.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_19 PF13245.1 gi|118431305|ref|NP_147673.2| - 0.0077 15.9 0.2 0.019 14.7 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|118431305|ref|NP_147673.2| - 0.01 15.2 0.9 0.019 14.3 0.3 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|118431305|ref|NP_147673.2| - 0.016 14.7 0.1 0.08 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|118431305|ref|NP_147673.2| - 0.024 14.9 0.0 0.034 14.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|118431305|ref|NP_147673.2| - 0.05 13.5 0.1 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|118431305|ref|NP_147673.2| - 0.051 12.4 0.1 0.074 11.9 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|118431305|ref|NP_147673.2| - 0.08 12.4 0.1 0.42 10.0 0.1 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family cobW PF02492.14 gi|118431305|ref|NP_147673.2| - 0.081 12.3 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|118431305|ref|NP_147673.2| - 0.12 12.0 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DEAD PF00270.24 gi|118431305|ref|NP_147673.2| - 0.12 11.8 0.0 2.6 7.5 0.1 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|118431305|ref|NP_147673.2| - 0.13 13.0 0.2 0.26 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|118431305|ref|NP_147673.2| - 0.15 12.2 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|118431305|ref|NP_147673.2| - 0.17 11.8 0.0 0.34 10.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain Miro PF08477.8 gi|118431305|ref|NP_147673.2| - 0.18 12.2 0.1 0.26 11.7 0.0 1.2 1 0 0 1 1 1 0 Miro-like protein ABC2_membrane_4 PF12730.2 gi|14601146|ref|NP_147674.1| - 6e-07 28.8 7.7 9.1e-07 28.2 5.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|14601146|ref|NP_147674.1| - 0.00015 20.7 10.9 0.00029 19.8 7.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|14601146|ref|NP_147674.1| - 0.0011 18.1 6.7 0.0013 17.8 4.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|14601146|ref|NP_147674.1| - 0.0024 17.1 8.9 0.0037 16.5 6.2 1.3 1 1 0 1 1 1 1 CcmB protein VWA_2 PF13519.1 gi|118431306|ref|NP_147675.2| - 6.4e-13 49.1 0.0 6.4e-12 45.9 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|118431306|ref|NP_147675.2| - 6.5e-09 35.7 0.1 1.6e-08 34.4 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|118431306|ref|NP_147675.2| - 1.1e-07 31.6 0.0 2.3e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|118431306|ref|NP_147675.2| - 1.6e-07 30.6 1.1 1.6e-07 30.6 0.8 2.5 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein AAA_5 PF07728.9 gi|118431307|ref|NP_147676.2| - 2.2e-27 95.4 0.0 5.1e-27 94.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|118431307|ref|NP_147676.2| - 1.7e-06 27.6 0.0 2.7e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|118431307|ref|NP_147676.2| - 3.7e-05 22.9 1.5 0.00044 19.4 0.0 3.0 4 0 0 4 4 4 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|118431307|ref|NP_147676.2| - 0.0001 22.4 0.0 0.00042 20.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|118431307|ref|NP_147676.2| - 0.00016 21.6 0.6 0.00054 20.0 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|118431307|ref|NP_147676.2| - 0.0011 19.1 0.1 0.018 15.2 0.0 3.0 2 2 1 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|118431307|ref|NP_147676.2| - 0.0057 17.4 0.2 0.031 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|118431307|ref|NP_147676.2| - 0.0078 15.7 0.0 0.056 12.9 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|118431307|ref|NP_147676.2| - 0.015 14.1 0.0 0.04 12.7 0.0 1.7 2 0 0 2 2 2 0 MCM2/3/5 family AAA_30 PF13604.1 gi|118431307|ref|NP_147676.2| - 0.023 14.2 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|118431307|ref|NP_147676.2| - 0.075 12.7 0.0 0.25 11.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain dCMP_cyt_deam_1 PF00383.17 gi|118431308|ref|NP_147677.2| - 6.5e-16 57.8 0.0 8.1e-16 57.5 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|118431308|ref|NP_147677.2| - 9.2e-10 38.6 0.2 1.3e-09 38.1 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|118431308|ref|NP_147677.2| - 8.7e-05 21.9 0.6 0.018 14.4 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Sm_multidrug_ex PF06695.6 gi|14601151|ref|NP_147679.1| - 5.6e-29 100.7 2.0 6.5e-29 100.5 1.4 1.0 1 0 0 1 1 1 1 Putative small multi-drug export protein DUF760 PF05542.6 gi|118431310|ref|NP_147680.2| - 0.0025 17.9 0.5 0.0064 16.6 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF760) UBN2 PF14223.1 gi|118431310|ref|NP_147680.2| - 0.11 12.2 0.1 0.22 11.3 0.0 1.6 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type Pyr_redox_2 PF07992.9 gi|14602197|ref|NP_147681.1| - 5.2e-17 62.3 0.0 9.4e-17 61.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|14602197|ref|NP_147681.1| - 2.5e-07 29.9 0.1 0.0046 15.9 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|14602197|ref|NP_147681.1| - 3.1e-06 27.5 0.4 0.21 11.9 0.7 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|14602197|ref|NP_147681.1| - 8.1e-05 22.5 0.2 0.00027 20.9 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|14602197|ref|NP_147681.1| - 0.0002 21.1 0.0 0.16 11.7 0.0 2.6 3 0 0 3 3 3 2 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|14602197|ref|NP_147681.1| - 0.00022 19.9 0.1 0.00038 19.2 0.1 1.3 1 0 0 1 1 1 1 Tryptophan halogenase HI0933_like PF03486.9 gi|14602197|ref|NP_147681.1| - 0.00062 18.3 0.0 0.05 12.0 0.0 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|14602197|ref|NP_147681.1| - 0.007 15.2 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|14602197|ref|NP_147681.1| - 0.0071 16.4 0.1 1.8 8.6 0.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|14602197|ref|NP_147681.1| - 0.16 10.8 0.1 0.62 8.8 0.1 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|14602197|ref|NP_147681.1| - 0.16 11.0 0.1 0.26 10.3 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Lycopene_cycl PF05834.7 gi|14602197|ref|NP_147681.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Nitroreductase PF00881.19 gi|14601153|ref|NP_147682.1| - 8.6e-27 93.9 0.4 2.1e-26 92.6 0.3 1.7 1 1 0 1 1 1 1 Nitroreductase family Peptidase_M48 PF01435.13 gi|118431311|ref|NP_147683.2| - 5.6e-39 134.0 0.0 7.7e-39 133.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Zn_peptidase_2 PF04298.7 gi|118431311|ref|NP_147683.2| - 0.0091 15.3 1.4 0.021 14.1 1.0 1.5 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase Peptidase_M56 PF05569.6 gi|118431311|ref|NP_147683.2| - 0.0093 14.9 0.1 0.022 13.7 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 IF-2B PF01008.12 gi|118431312|ref|NP_147685.2| - 1.1e-23 83.7 0.0 2.5e-23 82.4 0.0 1.6 1 1 0 1 1 1 1 Initiation factor 2 subunit family T2SF PF00482.18 gi|118431312|ref|NP_147685.2| - 0.00039 20.3 0.5 0.0007 19.5 0.4 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F YjeF_N PF03853.10 gi|118431312|ref|NP_147685.2| - 0.003 17.1 0.3 0.005 16.4 0.2 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus 4HBT PF03061.17 gi|118431312|ref|NP_147685.2| - 0.18 11.9 2.0 0.34 11.0 0.2 2.1 2 0 0 2 2 2 0 Thioesterase superfamily Peripla_BP_2 PF01497.13 gi|118431313|ref|NP_147686.2| - 1.9e-35 122.1 0.0 1.9e-35 122.1 0.0 2.0 2 1 0 2 2 2 1 Periplasmic binding protein Reo_sigmaC PF04582.7 gi|118431313|ref|NP_147686.2| - 1.3e-06 27.7 1.6 1.7e-05 24.1 0.4 2.0 1 1 1 2 2 2 2 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|118431313|ref|NP_147686.2| - 3e-06 27.1 9.3 0.00055 19.7 0.3 2.7 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2730 PF10805.3 gi|118431313|ref|NP_147686.2| - 3.2e-06 26.8 2.7 4.1e-05 23.2 0.2 3.0 2 1 1 3 3 3 1 Protein of unknown function (DUF2730) Tropomyosin PF00261.15 gi|118431313|ref|NP_147686.2| - 3.8e-06 26.1 6.1 6.4e-06 25.4 4.2 1.3 1 0 0 1 1 1 1 Tropomyosin NPV_P10 PF05531.7 gi|118431313|ref|NP_147686.2| - 9.8e-06 25.7 3.3 0.05 13.8 0.6 3.3 1 1 2 3 3 3 3 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.7 gi|118431313|ref|NP_147686.2| - 1.9e-05 24.4 3.9 0.074 12.7 0.9 2.2 1 1 1 2 2 2 2 Laminin Domain II Tropomyosin_1 PF12718.2 gi|118431313|ref|NP_147686.2| - 4.3e-05 23.3 7.6 0.00027 20.7 5.3 1.9 1 1 0 1 1 1 1 Tropomyosin like Snapin_Pallidin PF14712.1 gi|118431313|ref|NP_147686.2| - 0.00012 22.3 2.9 0.28 11.5 0.5 2.6 2 1 0 2 2 2 2 Snapin/Pallidin AAA_13 PF13166.1 gi|118431313|ref|NP_147686.2| - 0.00022 19.8 0.5 0.00033 19.2 0.3 1.2 1 0 0 1 1 1 1 AAA domain DUF1664 PF07889.7 gi|118431313|ref|NP_147686.2| - 0.00023 20.9 2.2 0.062 13.1 0.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) DUF2408 PF10303.4 gi|118431313|ref|NP_147686.2| - 0.00025 21.1 2.4 0.0019 18.3 1.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF2408) Baculo_PEP_C PF04513.7 gi|118431313|ref|NP_147686.2| - 0.00026 20.8 3.2 0.022 14.5 0.8 2.5 2 1 2 4 4 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus TBPIP PF07106.8 gi|118431313|ref|NP_147686.2| - 0.00026 20.5 6.2 0.024 14.2 1.0 2.2 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|118431313|ref|NP_147686.2| - 0.0003 19.5 6.1 0.00043 19.0 4.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein EzrA PF06160.7 gi|118431313|ref|NP_147686.2| - 0.0003 19.1 5.3 0.00095 17.4 3.7 1.7 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA HemX PF04375.9 gi|118431313|ref|NP_147686.2| - 0.00043 18.9 8.0 0.026 13.1 3.7 2.2 1 1 1 2 2 2 1 HemX RmuC PF02646.11 gi|118431313|ref|NP_147686.2| - 0.00054 18.8 4.7 0.039 12.8 0.1 2.2 1 1 1 2 2 2 1 RmuC family DUF948 PF06103.6 gi|118431313|ref|NP_147686.2| - 0.00062 19.5 1.4 0.34 10.8 0.0 2.9 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF342 PF03961.8 gi|118431313|ref|NP_147686.2| - 0.00065 18.2 1.3 0.39 9.0 0.2 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF342) CENP-Q PF13094.1 gi|118431313|ref|NP_147686.2| - 0.0007 19.6 9.9 0.0019 18.2 4.0 2.3 1 1 1 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit IFT57 PF10498.4 gi|118431313|ref|NP_147686.2| - 0.0011 17.8 2.5 0.0015 17.3 1.8 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 IncA PF04156.9 gi|118431313|ref|NP_147686.2| - 0.0012 18.4 26.6 0.01 15.4 11.1 3.7 2 1 1 3 3 2 1 IncA protein TelA PF05816.6 gi|118431313|ref|NP_147686.2| - 0.0013 17.5 3.8 0.0019 16.9 2.6 1.2 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) Atg14 PF10186.4 gi|118431313|ref|NP_147686.2| - 0.0014 17.6 5.6 0.0044 16.0 3.9 1.6 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Cast PF10174.4 gi|118431313|ref|NP_147686.2| - 0.0015 16.7 8.6 0.002 16.2 5.9 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Allexi_40kDa PF05549.6 gi|118431313|ref|NP_147686.2| - 0.0016 17.8 0.4 0.79 8.9 0.0 2.1 1 1 1 2 2 2 1 Allexivirus 40kDa protein FimP PF09766.4 gi|118431313|ref|NP_147686.2| - 0.0017 17.4 0.8 0.95 8.4 0.0 2.1 1 1 1 2 2 2 1 Fms-interacting protein FlaC_arch PF05377.6 gi|118431313|ref|NP_147686.2| - 0.0019 18.0 7.6 1.5 8.7 0.1 4.7 4 1 1 5 5 3 0 Flagella accessory protein C (FlaC) FH2 PF02181.18 gi|118431313|ref|NP_147686.2| - 0.0029 16.5 2.5 0.61 8.9 0.3 2.1 1 1 1 2 2 2 2 Formin Homology 2 Domain Filament PF00038.16 gi|118431313|ref|NP_147686.2| - 0.003 17.0 8.8 0.0086 15.5 6.1 1.6 1 1 0 1 1 1 1 Intermediate filament protein MCPsignal PF00015.16 gi|118431313|ref|NP_147686.2| - 0.0036 16.8 3.8 0.0058 16.1 2.6 1.2 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Nup54 PF13874.1 gi|118431313|ref|NP_147686.2| - 0.0037 16.9 5.8 0.0044 16.6 2.3 2.0 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 DUF869 PF05911.6 gi|118431313|ref|NP_147686.2| - 0.0038 15.5 1.9 0.0057 14.9 1.3 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) CALCOCO1 PF07888.6 gi|118431313|ref|NP_147686.2| - 0.0044 15.3 2.1 0.0059 14.9 1.4 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like DUF3584 PF12128.3 gi|118431313|ref|NP_147686.2| - 0.0057 14.0 6.4 0.0077 13.6 4.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) HrpB7 PF09486.5 gi|118431313|ref|NP_147686.2| - 0.0059 16.5 8.1 0.01 15.7 5.6 1.3 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) TPR_MLP1_2 PF07926.7 gi|118431313|ref|NP_147686.2| - 0.0065 16.2 9.2 0.099 12.3 5.6 2.3 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein Phasin PF05597.6 gi|118431313|ref|NP_147686.2| - 0.0071 16.1 1.3 0.0071 16.1 0.9 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Fib_alpha PF08702.5 gi|118431313|ref|NP_147686.2| - 0.0072 16.4 1.5 0.017 15.2 0.7 1.7 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|118431313|ref|NP_147686.2| - 0.0073 15.3 6.2 0.01 14.8 4.3 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 Matrilin_ccoil PF10393.4 gi|118431313|ref|NP_147686.2| - 0.008 15.5 7.2 0.12 11.7 0.2 4.0 5 0 0 5 5 3 1 Trimeric coiled-coil oligomerisation domain of matrilin MutS_III PF05192.13 gi|118431313|ref|NP_147686.2| - 0.0096 15.7 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 MutS domain III FUSC PF04632.7 gi|118431313|ref|NP_147686.2| - 0.0098 14.3 1.4 0.014 13.8 1.0 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family ADIP PF11559.3 gi|118431313|ref|NP_147686.2| - 0.0099 15.7 5.1 0.58 10.0 1.3 2.1 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding HR1 PF02185.11 gi|118431313|ref|NP_147686.2| - 0.013 15.2 9.3 0.83 9.4 0.6 3.5 1 1 2 3 3 3 0 Hr1 repeat Mnd1 PF03962.10 gi|118431313|ref|NP_147686.2| - 0.013 15.1 6.8 0.18 11.4 1.5 2.1 1 1 1 2 2 2 0 Mnd1 family ERM PF00769.14 gi|118431313|ref|NP_147686.2| - 0.013 15.0 0.5 0.018 14.5 0.4 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family KxDL PF10241.4 gi|118431313|ref|NP_147686.2| - 0.017 15.0 0.5 6.8 6.6 0.3 2.7 1 1 1 2 2 2 0 Uncharacterized conserved protein Dynamitin PF04912.9 gi|118431313|ref|NP_147686.2| - 0.017 13.9 5.4 0.016 14.0 2.9 1.5 1 1 0 1 1 1 0 Dynamitin V_ATPase_I PF01496.14 gi|118431313|ref|NP_147686.2| - 0.017 13.0 1.8 0.045 11.6 1.3 1.5 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF3373 PF11853.3 gi|118431313|ref|NP_147686.2| - 0.02 13.4 1.1 3.8 5.9 1.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) Taxilin PF09728.4 gi|118431313|ref|NP_147686.2| - 0.02 14.0 0.7 0.089 11.8 0.2 1.7 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Prefoldin_2 PF01920.15 gi|118431313|ref|NP_147686.2| - 0.02 14.6 8.9 11 5.8 0.2 3.9 1 1 1 2 2 2 0 Prefoldin subunit ATG16 PF08614.6 gi|118431313|ref|NP_147686.2| - 0.021 14.6 9.4 0.31 10.8 3.0 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) CR6_interact PF10147.4 gi|118431313|ref|NP_147686.2| - 0.023 14.0 0.8 0.04 13.2 0.5 1.3 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 COG2 PF06148.6 gi|118431313|ref|NP_147686.2| - 0.025 14.4 5.4 0.14 11.9 1.0 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 MscS_porin PF12795.2 gi|118431313|ref|NP_147686.2| - 0.026 13.8 15.6 0.63 9.3 10.9 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain BLOC1_2 PF10046.4 gi|118431313|ref|NP_147686.2| - 0.026 14.6 5.9 1.7 8.8 0.2 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_27 PF13514.1 gi|118431313|ref|NP_147686.2| - 0.026 12.2 10.0 0.072 10.7 7.2 1.4 1 1 0 1 1 1 0 AAA domain Seryl_tRNA_N PF02403.17 gi|118431313|ref|NP_147686.2| - 0.028 14.4 6.8 1.5 8.8 0.2 2.7 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain RP-C_C PF11800.3 gi|118431313|ref|NP_147686.2| - 0.03 14.0 2.7 0.099 12.3 1.3 2.2 2 1 0 2 2 1 0 Replication protein C C-terminal region GAS PF13851.1 gi|118431313|ref|NP_147686.2| - 0.032 13.4 4.1 0.29 10.2 1.3 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF972 PF06156.8 gi|118431313|ref|NP_147686.2| - 0.032 14.5 4.2 0.5 10.7 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TBCA PF02970.11 gi|118431313|ref|NP_147686.2| - 0.032 14.3 2.8 0.042 13.9 0.9 1.9 1 1 1 2 2 1 0 Tubulin binding cofactor A DUF677 PF05055.7 gi|118431313|ref|NP_147686.2| - 0.035 12.7 0.2 0.054 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Bacillus_HBL PF05791.6 gi|118431313|ref|NP_147686.2| - 0.036 13.4 1.1 4.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF16 PF01519.11 gi|118431313|ref|NP_147686.2| - 0.039 14.1 3.7 0.95 9.7 1.3 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 Spc24 PF08286.6 gi|118431313|ref|NP_147686.2| - 0.041 13.5 7.4 2.3 7.9 2.0 3.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF2884 PF11101.3 gi|118431313|ref|NP_147686.2| - 0.044 13.1 3.2 0.073 12.4 2.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) PspA_IM30 PF04012.7 gi|118431313|ref|NP_147686.2| - 0.045 13.1 12.0 1.6 8.0 6.2 2.3 1 1 1 2 2 2 0 PspA/IM30 family HOOK PF05622.7 gi|118431313|ref|NP_147686.2| - 0.046 11.5 4.6 0.068 10.9 3.2 1.2 1 0 0 1 1 1 0 HOOK protein Spectrin PF00435.16 gi|118431313|ref|NP_147686.2| - 0.047 13.9 6.5 0.27 11.5 2.3 2.6 1 1 1 2 2 2 0 Spectrin repeat Rootletin PF15035.1 gi|118431313|ref|NP_147686.2| - 0.05 13.5 8.2 0.6 10.0 4.1 2.0 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF1978 PF09321.5 gi|118431313|ref|NP_147686.2| - 0.055 12.9 4.1 0.079 12.3 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) Uds1 PF15456.1 gi|118431313|ref|NP_147686.2| - 0.055 13.4 8.4 0.48 10.4 1.3 3.1 2 2 0 2 2 2 0 Up-regulated During Septation Muted PF14942.1 gi|118431313|ref|NP_147686.2| - 0.059 13.2 1.9 0.11 12.4 1.1 1.5 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein CDC37_N PF03234.9 gi|118431313|ref|NP_147686.2| - 0.06 13.6 0.9 0.087 13.1 0.7 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Laminin_I PF06008.9 gi|118431313|ref|NP_147686.2| - 0.063 12.5 9.8 0.44 9.8 6.8 1.9 1 1 0 1 1 1 0 Laminin Domain I DUF4201 PF13870.1 gi|118431313|ref|NP_147686.2| - 0.064 12.6 2.0 0.44 9.9 0.3 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) FlxA PF14282.1 gi|118431313|ref|NP_147686.2| - 0.065 13.1 8.2 0.35 10.8 2.4 2.7 2 1 2 4 4 3 0 FlxA-like protein Herpes_U30 PF04523.8 gi|118431313|ref|NP_147686.2| - 0.068 10.6 1.2 0.85 7.0 0.4 1.9 1 1 1 2 2 2 0 Herpes virus tegument protein U30 FliJ PF02050.11 gi|118431313|ref|NP_147686.2| - 0.075 13.0 11.3 0.78 9.8 3.1 2.3 2 0 0 2 2 2 0 Flagellar FliJ protein HALZ PF02183.13 gi|118431313|ref|NP_147686.2| - 0.078 12.6 6.3 1.2 8.8 0.4 3.2 3 0 0 3 3 3 0 Homeobox associated leucine zipper Myosin_tail_1 PF01576.14 gi|118431313|ref|NP_147686.2| - 0.085 10.5 6.9 0.14 9.8 4.8 1.2 1 0 0 1 1 1 0 Myosin tail EAP30 PF04157.11 gi|118431313|ref|NP_147686.2| - 0.092 11.8 5.1 0.36 9.9 1.7 2.3 1 1 1 2 2 2 0 EAP30/Vps36 family V-SNARE_C PF12352.3 gi|118431313|ref|NP_147686.2| - 0.095 12.7 1.8 65 3.7 0.9 3.2 3 0 0 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus TMP_2 PF06791.8 gi|118431313|ref|NP_147686.2| - 0.11 12.1 6.0 0.74 9.3 1.0 2.6 1 1 1 2 2 2 0 Prophage tail length tape measure protein Syntaxin PF00804.20 gi|118431313|ref|NP_147686.2| - 0.11 12.6 7.2 0.26 11.4 3.8 2.2 1 1 1 2 2 2 0 Syntaxin MitMem_reg PF13012.1 gi|118431313|ref|NP_147686.2| - 0.12 12.4 1.4 3.4 7.7 0.2 2.8 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function TMF_DNA_bd PF12329.3 gi|118431313|ref|NP_147686.2| - 0.13 12.1 8.4 0.067 13.0 1.8 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Sec8_exocyst PF04048.9 gi|118431313|ref|NP_147686.2| - 0.13 11.9 1.8 0.26 10.9 0.6 1.8 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Mod_r PF07200.8 gi|118431313|ref|NP_147686.2| - 0.13 12.1 6.2 2.3 8.1 1.3 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Tmemb_cc2 PF10267.4 gi|118431313|ref|NP_147686.2| - 0.13 10.8 9.3 0.15 10.6 1.6 2.2 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF4164 PF13747.1 gi|118431313|ref|NP_147686.2| - 0.15 12.2 13.9 0.5 10.5 5.1 2.8 1 1 2 3 3 2 0 Domain of unknown function (DUF4164) AATF-Che1 PF13339.1 gi|118431313|ref|NP_147686.2| - 0.16 12.1 4.3 0.88 9.7 1.4 2.2 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF4525 PF15027.1 gi|118431313|ref|NP_147686.2| - 0.17 11.4 0.1 7 6.1 0.0 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4525) Fez1 PF06818.10 gi|118431313|ref|NP_147686.2| - 0.18 11.7 7.3 0.28 11.1 5.1 1.2 1 0 0 1 1 1 0 Fez1 Syntaxin-6_N PF09177.6 gi|118431313|ref|NP_147686.2| - 0.19 12.1 9.9 1.4 9.3 3.6 3.2 2 1 1 3 3 2 0 Syntaxin 6, N-terminal Fmp27_WPPW PF10359.4 gi|118431313|ref|NP_147686.2| - 0.19 10.0 3.4 1.2 7.4 2.4 1.9 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Mating_N PF12731.2 gi|118431313|ref|NP_147686.2| - 0.2 11.5 2.1 0.37 10.6 1.1 1.7 1 1 0 1 1 1 0 Mating-type protein beta 1 TMF_TATA_bd PF12325.3 gi|118431313|ref|NP_147686.2| - 0.2 11.3 8.6 2.2 8.0 3.7 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Katanin_con80 PF13925.1 gi|118431313|ref|NP_147686.2| - 0.21 11.3 0.9 2.6 7.7 0.2 2.1 1 1 0 2 2 2 0 con80 domain of Katanin DASH_Spc34 PF08657.5 gi|118431313|ref|NP_147686.2| - 0.22 11.1 7.1 1.6 8.3 2.2 2.2 1 1 1 2 2 2 0 DASH complex subunit Spc34 DUF4631 PF15450.1 gi|118431313|ref|NP_147686.2| - 0.23 9.7 6.0 0.34 9.1 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) YgaB PF14182.1 gi|118431313|ref|NP_147686.2| - 0.24 11.6 1.2 0.92 9.7 0.2 2.2 1 1 1 2 2 2 0 YgaB-like protein WEMBL PF05701.6 gi|118431313|ref|NP_147686.2| - 0.25 9.7 10.1 0.37 9.1 7.0 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light ALIX_LYPXL_bnd PF13949.1 gi|118431313|ref|NP_147686.2| - 0.26 10.1 9.9 0.61 8.9 6.9 1.5 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV CorA PF01544.13 gi|118431313|ref|NP_147686.2| - 0.26 10.2 5.8 0.3 10.0 3.1 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4200 PF13863.1 gi|118431313|ref|NP_147686.2| - 0.27 11.1 11.3 6.7 6.6 5.1 3.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Prominin PF05478.6 gi|118431313|ref|NP_147686.2| - 0.28 8.6 1.2 0.4 8.1 0.8 1.2 1 0 0 1 1 1 0 Prominin Prefoldin PF02996.12 gi|118431313|ref|NP_147686.2| - 0.28 10.8 8.7 8.2 6.1 0.8 3.7 1 1 2 4 4 4 0 Prefoldin subunit DUF4618 PF15397.1 gi|118431313|ref|NP_147686.2| - 0.32 10.2 2.2 0.57 9.4 1.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Med8 PF10232.4 gi|118431313|ref|NP_147686.2| - 0.34 10.3 2.3 0.41 10.1 0.3 1.9 1 1 1 2 2 2 0 Mediator of RNA polymerase II transcription complex subunit 8 DivIVA PF05103.8 gi|118431313|ref|NP_147686.2| - 0.35 10.9 6.6 1.2 9.1 1.0 3.0 1 1 1 2 2 2 0 DivIVA protein phiKZ_IP PF12699.2 gi|118431313|ref|NP_147686.2| - 0.38 9.6 2.2 1.2 7.9 0.1 2.3 1 1 1 2 2 2 0 phiKZ-like phage internal head proteins Zw10 PF06248.8 gi|118431313|ref|NP_147686.2| - 0.38 8.8 1.2 0.56 8.3 0.8 1.2 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 HAP1_N PF04849.8 gi|118431313|ref|NP_147686.2| - 0.45 9.4 8.5 0.74 8.7 3.6 1.9 1 1 1 2 2 2 0 HAP1 N-terminal conserved region DUF3450 PF11932.3 gi|118431313|ref|NP_147686.2| - 0.45 9.7 7.3 0.47 9.6 3.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Phage_GP20 PF06810.6 gi|118431313|ref|NP_147686.2| - 0.45 9.9 2.3 1.2 8.5 0.9 1.9 1 1 1 2 2 2 0 Phage minor structural protein GP20 Vps53_N PF04100.7 gi|118431313|ref|NP_147686.2| - 0.48 9.1 1.6 0.81 8.3 1.1 1.4 1 0 0 1 1 1 0 Vps53-like, N-terminal GvpK PF05121.7 gi|118431313|ref|NP_147686.2| - 0.48 10.2 10.4 10 6.0 0.6 3.9 1 1 3 4 4 3 0 Gas vesicle protein K WXG100 PF06013.7 gi|118431313|ref|NP_147686.2| - 0.49 10.4 8.1 16 5.5 0.0 3.6 1 1 2 3 3 3 0 Proteins of 100 residues with WXG BMFP PF04380.8 gi|118431313|ref|NP_147686.2| - 0.51 10.5 11.6 0.83 9.8 1.8 3.7 3 1 1 4 4 3 0 Membrane fusogenic activity PspB PF06667.7 gi|118431313|ref|NP_147686.2| - 0.55 10.2 13.2 2.3 8.1 0.5 3.9 1 1 3 4 4 3 0 Phage shock protein B DivIC PF04977.10 gi|118431313|ref|NP_147686.2| - 0.66 9.4 11.4 0.22 11.0 0.9 3.4 1 1 3 4 4 4 0 Septum formation initiator DUF812 PF05667.6 gi|118431313|ref|NP_147686.2| - 0.72 8.2 6.0 1.6 7.1 4.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF4407 PF14362.1 gi|118431313|ref|NP_147686.2| - 0.73 8.7 5.0 0.95 8.3 1.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) SlyX PF04102.7 gi|118431313|ref|NP_147686.2| - 0.76 10.1 12.2 3.3 8.1 1.3 3.8 2 1 1 4 4 3 0 SlyX DUF4349 PF14257.1 gi|118431313|ref|NP_147686.2| - 0.78 8.9 17.5 0.57 9.3 2.4 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Tektin PF03148.9 gi|118431313|ref|NP_147686.2| - 0.89 8.0 5.4 2.9 6.3 3.9 1.6 1 1 0 1 1 1 0 Tektin family HisKA_3 PF07730.8 gi|118431313|ref|NP_147686.2| - 0.98 9.8 7.9 12 6.2 3.0 2.6 2 0 0 2 2 2 0 Histidine kinase Lge1 PF11488.3 gi|118431313|ref|NP_147686.2| - 1.1 9.4 4.0 7.4 6.8 2.6 2.3 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 Med9 PF07544.8 gi|118431313|ref|NP_147686.2| - 1.4 8.7 7.3 12 5.6 2.9 2.6 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 UPF0184 PF03670.8 gi|118431313|ref|NP_147686.2| - 1.4 9.1 7.5 21 5.3 1.4 3.4 1 1 3 4 4 3 0 Uncharacterised protein family (UPF0184) Dor1 PF04124.7 gi|118431313|ref|NP_147686.2| - 1.5 7.2 6.9 5.2 5.4 2.2 2.4 1 1 1 2 2 2 0 Dor1-like family Occludin_ELL PF07303.8 gi|118431313|ref|NP_147686.2| - 1.7 9.3 4.7 77 4.0 0.1 3.5 1 1 2 3 3 3 0 Occludin homology domain Macoilin PF09726.4 gi|118431313|ref|NP_147686.2| - 1.7 6.7 4.5 2.4 6.3 3.1 1.1 1 0 0 1 1 1 0 Transmembrane protein Cortex-I_coil PF09304.5 gi|118431313|ref|NP_147686.2| - 1.8 8.6 11.0 10 6.2 5.1 2.5 1 1 1 2 2 2 0 Cortexillin I, coiled coil HAUS-augmin3 PF14932.1 gi|118431313|ref|NP_147686.2| - 1.9 7.6 7.0 3.9 6.6 4.8 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 FadA PF09403.5 gi|118431313|ref|NP_147686.2| - 2 8.4 7.6 1.6 8.7 1.3 2.2 1 1 1 2 2 2 0 Adhesion protein FadA HSCB_C PF07743.8 gi|118431313|ref|NP_147686.2| - 2.2 8.8 9.2 1.3 9.4 1.2 3.0 1 1 0 2 2 2 0 HSCB C-terminal oligomerisation domain Cep57_MT_bd PF06657.8 gi|118431313|ref|NP_147686.2| - 2.4 8.1 8.6 27 4.8 0.2 3.1 1 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 DegS PF05384.6 gi|118431313|ref|NP_147686.2| - 3 7.0 6.9 6.1 6.0 0.2 2.2 1 1 1 2 2 2 0 Sensor protein DegS Vps5 PF09325.5 gi|118431313|ref|NP_147686.2| - 3.2 6.9 6.8 16 4.6 2.4 2.3 1 1 1 2 2 2 0 Vps5 C terminal like Sas10_Utp3 PF04000.10 gi|118431313|ref|NP_147686.2| - 3.9 7.7 5.9 14 5.9 0.8 3.3 2 2 0 2 2 2 0 Sas10/Utp3/C1D family FlgN PF05130.7 gi|118431313|ref|NP_147686.2| - 5.3 7.2 12.3 12 6.1 8.5 1.5 1 1 0 1 1 1 0 FlgN protein Viral_P18 PF04521.8 gi|118431313|ref|NP_147686.2| - 6.8 6.1 5.9 22 4.5 0.3 2.7 1 1 2 3 3 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF2205 PF10224.4 gi|118431313|ref|NP_147686.2| - 9 5.9 12.4 10 5.7 0.9 3.8 1 1 3 4 4 4 0 Predicted coiled-coil protein (DUF2205) FecCD PF01032.13 gi|118431314|ref|NP_147689.2| - 1.1e-65 221.5 38.1 1.3e-65 221.2 26.4 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|118431314|ref|NP_147689.2| - 0.005 16.1 14.8 0.0088 15.3 10.2 1.4 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|118431315|ref|NP_147690.2| - 1.7e-24 86.6 0.0 2.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431315|ref|NP_147690.2| - 4.2e-16 59.7 0.0 7.8e-09 35.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431315|ref|NP_147690.2| - 2.1e-07 30.3 0.0 0.00077 18.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|118431315|ref|NP_147690.2| - 0.0001 21.4 0.0 0.27 10.2 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|118431315|ref|NP_147690.2| - 0.00033 21.0 0.0 0.00047 20.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431315|ref|NP_147690.2| - 0.00042 20.3 1.1 0.0014 18.6 0.2 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|118431315|ref|NP_147690.2| - 0.00099 18.5 0.1 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|118431315|ref|NP_147690.2| - 0.0012 18.3 0.0 0.0017 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|118431315|ref|NP_147690.2| - 0.0033 17.1 0.1 0.0088 15.7 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|118431315|ref|NP_147690.2| - 0.0049 16.5 0.1 0.0084 15.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain UPF0079 PF02367.12 gi|118431315|ref|NP_147690.2| - 0.0093 15.5 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF3584 PF12128.3 gi|118431315|ref|NP_147690.2| - 0.014 12.7 0.0 0.019 12.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_22 PF13401.1 gi|118431315|ref|NP_147690.2| - 0.015 15.4 0.1 0.038 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|118431315|ref|NP_147690.2| - 0.016 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|118431315|ref|NP_147690.2| - 0.016 15.0 0.3 0.048 13.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|118431315|ref|NP_147690.2| - 0.017 14.8 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|118431315|ref|NP_147690.2| - 0.022 15.5 0.2 0.043 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|118431315|ref|NP_147690.2| - 0.035 13.8 0.1 0.058 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|118431315|ref|NP_147690.2| - 0.039 13.5 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|118431315|ref|NP_147690.2| - 0.043 14.0 0.0 0.098 12.8 0.0 1.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|118431315|ref|NP_147690.2| - 0.061 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|118431315|ref|NP_147690.2| - 0.087 13.1 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|118431315|ref|NP_147690.2| - 0.11 11.8 0.2 0.26 10.6 0.1 1.5 2 0 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|118431315|ref|NP_147690.2| - 0.13 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_13 PF13166.1 gi|118431315|ref|NP_147690.2| - 0.14 10.6 0.0 0.18 10.2 0.0 1.0 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|118431315|ref|NP_147690.2| - 0.14 11.3 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|118431315|ref|NP_147690.2| - 0.2 11.0 0.1 0.29 10.5 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AMMECR1 PF01871.12 gi|118431316|ref|NP_147691.2| - 1.5e-50 170.7 0.0 4.4e-50 169.1 0.0 1.6 2 0 0 2 2 2 1 AMMECR1 Wyosine_form PF08608.7 gi|14601163|ref|NP_147692.1| - 8.7e-19 67.3 0.0 1.6e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|14601163|ref|NP_147692.1| - 1.5e-15 57.7 0.0 2.6e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Pyr_redox_2 PF07992.9 gi|118431317|ref|NP_147693.2| - 3.3e-31 108.7 0.1 4.4e-31 108.3 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|118431317|ref|NP_147693.2| - 2.2e-14 54.0 0.3 6.2e-11 42.7 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|118431317|ref|NP_147693.2| - 5.4e-14 52.3 1.8 4.2e-11 43.0 0.3 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|118431317|ref|NP_147693.2| - 1e-09 37.7 4.2 6.7e-07 28.5 0.3 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|118431317|ref|NP_147693.2| - 3.4e-07 29.0 1.0 0.017 13.6 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|118431317|ref|NP_147693.2| - 4.8e-07 28.9 9.1 0.014 14.3 0.1 4.6 3 1 2 5 5 5 2 FAD binding domain GIDA PF01134.17 gi|118431317|ref|NP_147693.2| - 2.9e-06 26.4 3.5 0.031 13.1 0.1 3.9 3 1 1 4 4 4 2 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|118431317|ref|NP_147693.2| - 2.2e-05 23.5 0.0 0.054 12.4 0.0 3.0 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|118431317|ref|NP_147693.2| - 0.00096 18.3 4.3 0.0045 16.1 0.1 2.9 3 1 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.1 gi|118431317|ref|NP_147693.2| - 0.0027 17.4 0.9 1.1 9.0 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|118431317|ref|NP_147693.2| - 0.0029 16.7 1.4 0.067 12.2 0.0 2.5 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|118431317|ref|NP_147693.2| - 0.016 14.3 1.7 0.33 9.9 0.3 2.7 2 1 0 2 2 2 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|118431317|ref|NP_147693.2| - 0.027 13.3 1.2 0.12 11.2 0.0 2.3 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|118431317|ref|NP_147693.2| - 0.18 11.8 0.2 0.18 11.8 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HTH_23 PF13384.1 gi|14601165|ref|NP_147694.1| - 0.0099 15.5 1.3 0.018 14.6 0.9 1.6 1 1 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|14601165|ref|NP_147694.1| - 0.02 14.8 1.1 0.02 14.8 0.7 1.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|14601165|ref|NP_147694.1| - 0.044 13.4 0.5 0.071 12.7 0.3 1.3 1 0 0 1 1 1 0 HTH domain Ribonuc_red_lgN PF00317.16 gi|14601165|ref|NP_147694.1| - 0.044 13.5 0.1 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain MarR_2 PF12802.2 gi|14601165|ref|NP_147694.1| - 0.051 13.2 0.3 0.092 12.4 0.2 1.5 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|14601165|ref|NP_147694.1| - 0.099 12.8 1.0 0.15 12.1 0.7 1.4 1 1 0 1 1 1 0 Winged helix-turn helix ATP-grasp_2 PF08442.5 gi|118431318|ref|NP_147696.2| - 7.3e-50 169.1 0.0 1e-49 168.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|118431318|ref|NP_147696.2| - 1.9e-14 53.5 0.0 3.8e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|118431318|ref|NP_147696.2| - 1.3e-06 27.7 0.1 0.00043 19.5 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|118431318|ref|NP_147696.2| - 0.0044 16.7 0.0 0.0082 15.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain DUF362 PF04015.7 gi|118431318|ref|NP_147696.2| - 0.066 12.6 0.0 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF362) CoA_binding PF02629.14 gi|118431319|ref|NP_147697.2| - 5e-32 110.2 1.5 2.7e-31 107.9 0.3 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|118431319|ref|NP_147697.2| - 2.5e-19 69.4 0.1 4.2e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|118431319|ref|NP_147697.2| - 2e-14 53.3 0.0 1.2e-13 50.7 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|118431319|ref|NP_147697.2| - 4.6e-11 42.9 0.4 1.1e-10 41.6 0.1 1.8 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|118431319|ref|NP_147697.2| - 0.00038 20.9 0.1 0.0011 19.5 0.1 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold ResIII PF04851.10 gi|14601169|ref|NP_147698.1| - 1.4e-18 67.4 0.0 6.4e-18 65.2 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|14601169|ref|NP_147698.1| - 2.5e-15 56.0 0.1 5.8e-15 54.9 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|14601169|ref|NP_147698.1| - 1.5e-09 37.5 0.0 3.6e-09 36.3 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|14601169|ref|NP_147698.1| - 1.3e-07 30.7 0.0 5.4e-06 25.4 0.0 2.1 1 1 1 2 2 2 2 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|14601169|ref|NP_147698.1| - 0.0014 18.2 3.8 0.88 9.3 0.1 3.3 3 0 0 3 3 3 2 Part of AAA domain AAA_22 PF13401.1 gi|14601169|ref|NP_147698.1| - 0.0037 17.4 0.0 0.028 14.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF2863 PF11062.3 gi|14601171|ref|NP_147700.1| - 0.095 10.7 0.0 0.12 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) HEAT_PBS PF03130.11 gi|14601171|ref|NP_147700.1| - 0.31 11.6 1.5 19 6.1 0.1 2.7 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat Pribosyltran PF00156.22 gi|118431320|ref|NP_147701.2| - 4.7e-15 55.4 0.1 8.9e-15 54.5 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase domain HTH_IclR PF09339.5 gi|118431320|ref|NP_147701.2| - 0.00096 18.6 0.1 0.0035 16.9 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_3 PF01381.17 gi|118431320|ref|NP_147701.2| - 0.0014 18.4 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|118431320|ref|NP_147701.2| - 0.01 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.2 gi|118431320|ref|NP_147701.2| - 0.011 15.7 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UPRTase PF14681.1 gi|118431320|ref|NP_147701.2| - 0.023 13.9 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Sigma70_r4 PF04545.11 gi|118431320|ref|NP_147701.2| - 0.07 12.4 0.2 0.16 11.2 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|118431320|ref|NP_147701.2| - 0.1 12.2 0.0 0.44 10.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family SRP54 PF00448.17 gi|118431321|ref|NP_147702.2| - 1.9e-73 246.0 0.0 2.4e-73 245.7 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|118431321|ref|NP_147702.2| - 2.5e-08 33.9 1.3 3.1e-08 33.6 0.2 1.7 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.1 gi|118431321|ref|NP_147702.2| - 2.4e-05 24.0 0.2 3.8e-05 23.3 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|118431321|ref|NP_147702.2| - 0.00017 21.2 1.2 0.00066 19.3 0.8 2.2 1 0 0 1 1 1 1 Part of AAA domain cobW PF02492.14 gi|118431321|ref|NP_147702.2| - 0.00019 20.9 0.1 0.0003 20.2 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|118431321|ref|NP_147702.2| - 0.00024 21.2 0.0 0.00051 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|118431321|ref|NP_147702.2| - 0.00033 20.3 0.2 0.00089 18.9 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|118431321|ref|NP_147702.2| - 0.00088 18.1 4.5 0.00092 18.0 1.0 2.3 2 1 0 2 2 2 1 ArgK protein KaiC PF06745.8 gi|118431321|ref|NP_147702.2| - 0.0016 17.5 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_16 PF13191.1 gi|118431321|ref|NP_147702.2| - 0.0039 17.2 0.1 0.014 15.4 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|118431321|ref|NP_147702.2| - 0.0053 16.6 0.1 0.0099 15.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118431321|ref|NP_147702.2| - 0.0092 16.1 0.0 0.018 15.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|118431321|ref|NP_147702.2| - 0.013 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CbiA PF01656.18 gi|118431321|ref|NP_147702.2| - 0.017 14.5 3.8 0.41 10.0 2.6 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.1 gi|118431321|ref|NP_147702.2| - 0.034 14.0 0.1 0.23 11.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|118431321|ref|NP_147702.2| - 0.046 13.4 0.5 0.68 9.6 0.1 2.3 2 0 0 2 2 2 0 NTPase LpxK PF02606.9 gi|118431321|ref|NP_147702.2| - 0.09 11.7 0.1 0.16 10.8 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase TPP_enzyme_M PF00205.17 gi|118431321|ref|NP_147702.2| - 0.092 12.5 0.7 0.66 9.7 0.2 2.4 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain AAA_10 PF12846.2 gi|118431321|ref|NP_147702.2| - 0.12 11.7 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_11 PF13086.1 gi|118431321|ref|NP_147702.2| - 0.17 11.4 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|118431322|ref|NP_147703.2| - 5.3e-23 80.9 1.5 7e-23 80.5 1.0 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|118431322|ref|NP_147703.2| - 0.00063 19.4 7.6 0.085 12.6 0.4 2.2 2 0 0 2 2 2 2 Prefoldin subunit vATP-synt_E PF01991.13 gi|118431322|ref|NP_147703.2| - 0.0014 17.9 1.7 0.0014 17.9 1.2 1.9 2 0 0 2 2 2 1 ATP synthase (E/31 kDa) subunit Fib_alpha PF08702.5 gi|118431322|ref|NP_147703.2| - 0.0092 16.1 3.3 0.059 13.4 1.1 2.0 2 0 0 2 2 2 1 Fibrinogen alpha/beta chain family DASH_Dam1 PF08653.5 gi|118431322|ref|NP_147703.2| - 0.012 15.3 1.8 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 DASH complex subunit Dam1 CENP-F_leu_zip PF10473.4 gi|118431322|ref|NP_147703.2| - 0.019 14.8 6.8 0.34 10.7 0.2 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin PF00804.20 gi|118431322|ref|NP_147703.2| - 0.027 14.6 3.8 0.91 9.7 1.1 2.1 2 0 0 2 2 2 0 Syntaxin HHH_6 PF14579.1 gi|118431322|ref|NP_147703.2| - 0.038 14.0 0.2 0.049 13.6 0.1 1.4 1 1 0 1 1 1 0 Helix-hairpin-helix motif Nsp1_C PF05064.8 gi|118431322|ref|NP_147703.2| - 0.042 13.4 7.7 0.15 11.6 0.4 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Sigma70_r3 PF04539.11 gi|118431322|ref|NP_147703.2| - 0.044 13.6 0.9 0.12 12.2 0.1 2.1 2 1 0 2 2 2 0 Sigma-70 region 3 V-SNARE PF05008.10 gi|118431322|ref|NP_147703.2| - 0.051 13.7 2.1 0.051 13.7 1.5 2.5 2 1 1 3 3 2 0 Vesicle transport v-SNARE protein N-terminus Flu_NS2 PF00601.14 gi|118431322|ref|NP_147703.2| - 0.077 13.2 0.2 2.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) Spc24 PF08286.6 gi|118431322|ref|NP_147703.2| - 0.08 12.6 5.5 2.1 8.0 1.5 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DASH_Dad3 PF08656.5 gi|118431322|ref|NP_147703.2| - 0.1 12.3 3.1 1.5 8.5 1.1 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad3 Snapin_Pallidin PF14712.1 gi|118431322|ref|NP_147703.2| - 0.11 12.7 5.4 1.4 9.2 0.7 2.3 2 0 0 2 2 2 0 Snapin/Pallidin MtrB PF05440.7 gi|118431322|ref|NP_147703.2| - 0.12 12.3 0.1 3.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Med9 PF07544.8 gi|118431322|ref|NP_147703.2| - 0.13 12.0 4.7 0.46 10.2 0.2 2.4 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Syntaxin-6_N PF09177.6 gi|118431322|ref|NP_147703.2| - 0.13 12.6 2.1 3.2 8.2 0.2 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Cep57_MT_bd PF06657.8 gi|118431322|ref|NP_147703.2| - 0.14 12.0 8.2 1.9 8.4 1.1 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 EIAV_Rev PF11129.3 gi|118431322|ref|NP_147703.2| - 0.15 12.0 1.6 0.27 11.2 0.2 1.8 2 0 0 2 2 2 0 Rev protein of equine infectious anaemia virus bZIP_Maf PF03131.12 gi|118431322|ref|NP_147703.2| - 0.2 11.9 4.6 0.11 12.8 0.7 2.1 2 0 0 2 2 2 0 bZIP Maf transcription factor Sigma70_ner PF04546.8 gi|118431322|ref|NP_147703.2| - 0.24 10.9 5.5 3.2 7.3 0.6 2.1 2 0 0 2 2 2 0 Sigma-70, non-essential region THOC7 PF05615.8 gi|118431322|ref|NP_147703.2| - 0.29 11.4 6.2 1.6 9.0 0.3 2.2 2 0 0 2 2 2 0 Tho complex subunit 7 NPV_P10 PF05531.7 gi|118431322|ref|NP_147703.2| - 0.33 11.2 2.4 8.1 6.7 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DivIVA PF05103.8 gi|118431322|ref|NP_147703.2| - 0.48 10.4 9.8 1.2 9.1 2.4 2.1 2 0 0 2 2 2 0 DivIVA protein MIS13 PF08202.6 gi|118431322|ref|NP_147703.2| - 0.79 8.7 4.8 1.2 8.1 3.4 1.5 1 1 0 1 1 1 0 Mis12-Mtw1 protein family GAS PF13851.1 gi|118431322|ref|NP_147703.2| - 0.83 8.8 9.4 1.6 7.8 3.2 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.5 gi|118431322|ref|NP_147703.2| - 1.1 9.3 12.0 1.9 8.5 3.5 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil DivIC PF04977.10 gi|118431322|ref|NP_147703.2| - 1.2 8.7 8.4 3.8 7.0 0.1 2.5 2 1 1 3 3 3 0 Septum formation initiator DinB_2 PF12867.2 gi|118431322|ref|NP_147703.2| - 1.4 9.2 4.5 1.1e+02 3.1 3.1 2.5 1 1 0 1 1 1 0 DinB superfamily Snf7 PF03357.16 gi|118431322|ref|NP_147703.2| - 2.1 7.6 10.2 4 6.8 0.1 2.1 2 0 0 2 2 2 0 Snf7 DUF342 PF03961.8 gi|118431322|ref|NP_147703.2| - 2.5 6.4 7.0 3.6 5.9 1.5 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF342) MerR-DNA-bind PF09278.6 gi|118431322|ref|NP_147703.2| - 3.4 8.1 11.9 0.36 11.2 1.3 2.8 2 1 0 2 2 2 0 MerR, DNA binding APG6 PF04111.7 gi|118431322|ref|NP_147703.2| - 5.6 5.9 8.0 1.1 8.3 1.4 1.9 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|118431322|ref|NP_147703.2| - 6.3 7.3 9.7 14 6.1 1.1 2.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Ribosomal_L18ae PF01775.12 gi|118431323|ref|YP_874872.1| - 8.8e-12 45.0 0.6 1.9e-11 43.9 0.4 1.5 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|14601175|ref|NP_147705.1| - 1.7e-69 232.9 0.8 2e-69 232.7 0.5 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|118431324|ref|NP_147706.2| - 1.7e-23 82.0 2.4 2.4e-23 81.5 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|118431325|ref|YP_874873.1| - 5.2e-20 70.6 10.4 6.4e-20 70.3 7.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|118431326|ref|YP_874874.1| - 3.6e-28 97.6 13.0 4e-28 97.5 9.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|118431326|ref|YP_874874.1| - 1.7e-05 23.9 8.0 2e-05 23.7 5.5 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 Taq-exonuc PF09281.5 gi|118431326|ref|YP_874874.1| - 0.012 15.7 0.2 0.014 15.5 0.1 1.1 1 0 0 1 1 1 0 Taq polymerase, exonuclease CAF-1_p150 PF11600.3 gi|118431326|ref|YP_874874.1| - 0.25 10.6 7.4 0.32 10.3 5.1 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal CCDC66 PF15236.1 gi|118431326|ref|YP_874874.1| - 0.41 10.2 12.7 0.6 9.7 8.8 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 66 DUF826 PF05696.6 gi|118431326|ref|YP_874874.1| - 0.86 9.7 3.5 0.46 10.6 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF826) DUF4192 PF13830.1 gi|118431326|ref|YP_874874.1| - 6.9 6.2 9.6 8.2 5.9 6.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Ribosomal_S19e PF01090.14 gi|14601178|ref|NP_147710.1| - 5.1e-55 184.7 0.0 5.8e-55 184.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|14601178|ref|NP_147710.1| - 0.063 13.0 0.4 1.1 9.0 0.0 2.7 4 0 0 4 4 4 0 Ribonuclease R winged-helix domain MarR_2 PF12802.2 gi|14601178|ref|NP_147710.1| - 0.09 12.4 0.4 0.63 9.7 0.1 2.4 3 0 0 3 3 3 0 MarR family CRS1_YhbY PF01985.16 gi|14601179|ref|NP_147711.1| - 7.1e-16 57.9 1.4 9.1e-16 57.6 1.0 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|118431327|ref|NP_147712.2| - 1.4e-16 60.0 0.1 2.1e-16 59.5 0.0 1.3 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.2 gi|118431327|ref|NP_147712.2| - 0.08 12.7 0.1 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|118431327|ref|NP_147712.2| - 0.13 12.2 0.6 0.22 11.4 0.0 1.7 2 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Pro-rich PF15240.1 gi|118431327|ref|NP_147712.2| - 0.69 9.9 12.4 0.92 9.5 8.6 1.1 1 0 0 1 1 1 0 Proline-rich Nudix_N_2 PF14803.1 gi|118431327|ref|NP_147712.2| - 1.4 8.6 4.4 8 6.2 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_A_M PF01068.16 gi|118431328|ref|NP_147713.2| - 1.5e-58 197.5 0.1 3.1e-58 196.4 0.0 1.6 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|118431328|ref|NP_147713.2| - 5.7e-50 169.5 0.0 9.7e-50 168.8 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|118431328|ref|NP_147713.2| - 6.9e-27 93.6 0.0 1.6e-26 92.4 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region FlpD PF02662.11 gi|118431328|ref|NP_147713.2| - 0.085 12.5 0.1 0.58 9.8 0.0 2.2 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Nol1_Nop2_Fmu PF01189.12 gi|14601183|ref|NP_147715.1| - 4.1e-30 105.1 0.0 7.8e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 NOL1/NOP2/sun family PUA PF01472.15 gi|14601183|ref|NP_147715.1| - 8.8e-18 63.8 1.7 1.8e-17 62.8 1.2 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_26 PF13659.1 gi|14601183|ref|NP_147715.1| - 8.9e-09 35.4 0.1 1.9e-08 34.3 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|14601183|ref|NP_147715.1| - 0.037 14.8 0.0 0.39 11.5 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|14601183|ref|NP_147715.1| - 0.075 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|14601183|ref|NP_147715.1| - 0.09 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Cons_hypoth95 PF03602.10 gi|14601183|ref|NP_147715.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MTS PF05175.9 gi|14601183|ref|NP_147715.1| - 0.15 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain FtsJ PF01728.14 gi|14601183|ref|NP_147715.1| - 0.19 11.6 0.1 0.39 10.6 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PIN PF01850.16 gi|14601184|ref|NP_147716.1| - 0.00026 21.3 0.2 0.00045 20.5 0.1 1.4 1 1 0 1 1 1 1 PIN domain GHMP_kinases_C PF08544.8 gi|14601184|ref|NP_147716.1| - 0.0055 16.8 0.1 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal UPF0278 PF08745.6 gi|14601184|ref|NP_147716.1| - 0.027 13.7 2.0 0.034 13.3 1.2 1.3 1 1 0 1 1 1 0 UPF0278 family NAD_kinase PF01513.16 gi|118431329|ref|NP_147717.2| - 5.9e-40 136.8 0.2 3.3e-39 134.3 0.1 1.8 2 0 0 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|118431329|ref|NP_147717.2| - 0.032 13.6 0.2 0.065 12.6 0.0 1.6 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Met_10 PF02475.11 gi|118431330|ref|NP_147718.2| - 1.1e-40 139.3 0.0 1.3e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|118431330|ref|NP_147718.2| - 2.5e-11 43.6 0.4 5.1e-11 42.6 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|118431330|ref|NP_147718.2| - 3.1e-05 24.4 0.0 6.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|118431330|ref|NP_147718.2| - 5.1e-05 22.5 0.0 8.1e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|118431330|ref|NP_147718.2| - 0.00023 20.6 0.0 0.0004 19.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|118431330|ref|NP_147718.2| - 0.00031 20.1 0.0 0.00051 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|118431330|ref|NP_147718.2| - 0.00041 19.9 0.0 0.00063 19.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|118431330|ref|NP_147718.2| - 0.0038 16.8 0.0 0.0063 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|118431330|ref|NP_147718.2| - 0.018 15.3 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|118431330|ref|NP_147718.2| - 0.026 14.1 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltrans_SAM PF10672.4 gi|118431330|ref|NP_147718.2| - 0.035 12.9 0.1 0.051 12.4 0.1 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase DNA_methylase PF00145.12 gi|118431330|ref|NP_147718.2| - 0.061 12.4 0.0 0.083 12.0 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DUF1150 PF06620.6 gi|118431330|ref|NP_147718.2| - 0.095 12.5 0.0 0.91 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1150) FBPase_3 PF01950.11 gi|118431331|ref|NP_147719.2| - 2e-189 629.1 0.0 2.3e-189 628.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Peptidase_M24 PF00557.19 gi|118431332|ref|NP_147721.2| - 1.6e-38 132.3 0.3 1.8e-38 132.1 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.1 gi|14601190|ref|NP_147722.1| - 9.6e-25 87.1 0.2 3.6e-24 85.3 0.1 1.9 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|14601190|ref|NP_147722.1| - 6e-18 65.0 0.0 7.6e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|14601190|ref|NP_147722.1| - 9.4e-18 64.5 2.6 1.2e-17 64.2 1.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Inhibitor_I78 PF11720.3 gi|14601190|ref|NP_147722.1| - 0.022 14.4 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 Peptidase inhibitor I78 family ABC_tran PF00005.22 gi|118431333|ref|NP_147723.2| - 8.4e-39 132.9 0.0 2.1e-18 66.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|118431333|ref|NP_147723.2| - 3.9e-14 53.3 0.1 0.024 14.6 0.0 4.1 2 2 1 4 4 4 4 AAA domain RLI PF04068.10 gi|118431333|ref|NP_147723.2| - 2.1e-13 49.5 1.7 2.1e-13 49.5 1.2 1.9 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|118431333|ref|NP_147723.2| - 5.1e-11 42.2 0.6 0.012 14.8 0.0 4.0 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.2 gi|118431333|ref|NP_147723.2| - 5.8e-10 38.5 14.4 3e-06 26.8 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|118431333|ref|NP_147723.2| - 9.8e-08 31.2 5.7 9.8e-08 31.2 4.0 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain AAA PF00004.24 gi|118431333|ref|NP_147723.2| - 1.4e-06 28.4 0.0 0.035 14.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|118431333|ref|NP_147723.2| - 3.4e-06 26.8 0.1 0.066 13.1 0.0 2.9 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|118431333|ref|NP_147723.2| - 4.8e-06 27.3 3.2 0.041 14.6 0.1 3.1 2 2 0 2 2 2 2 AAA domain Fer4_2 PF12797.2 gi|118431333|ref|NP_147723.2| - 5.9e-06 25.9 14.0 4.2e-05 23.1 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|118431333|ref|NP_147723.2| - 9.3e-06 25.9 21.2 0.00026 21.3 1.1 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|118431333|ref|NP_147723.2| - 1.2e-05 25.0 20.8 0.00035 20.3 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|118431333|ref|NP_147723.2| - 1.3e-05 24.9 8.3 2.4e-05 24.0 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain MobB PF03205.9 gi|118431333|ref|NP_147723.2| - 4.8e-05 23.0 0.2 0.21 11.2 0.0 3.1 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|118431333|ref|NP_147723.2| - 6.2e-05 22.6 0.7 0.067 12.8 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|118431333|ref|NP_147723.2| - 6.2e-05 22.7 0.4 0.062 12.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Fer4_16 PF13484.1 gi|118431333|ref|NP_147723.2| - 0.00018 22.1 2.3 0.013 16.2 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_22 PF13401.1 gi|118431333|ref|NP_147723.2| - 0.00019 21.5 1.9 1.1 9.3 0.0 3.7 3 2 0 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|118431333|ref|NP_147723.2| - 0.00019 21.3 0.8 0.16 11.8 0.0 3.7 2 2 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|118431333|ref|NP_147723.2| - 0.00024 20.5 5.3 0.039 13.3 0.0 3.6 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|118431333|ref|NP_147723.2| - 0.0003 20.2 0.2 0.24 10.9 0.0 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|118431333|ref|NP_147723.2| - 0.00031 21.0 0.0 0.51 10.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|118431333|ref|NP_147723.2| - 0.00072 19.2 0.9 0.19 11.4 0.0 3.0 2 0 0 2 2 2 1 NTPase Miro PF08477.8 gi|118431333|ref|NP_147723.2| - 0.0018 18.7 0.0 0.94 9.9 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein AAA_23 PF13476.1 gi|118431333|ref|NP_147723.2| - 0.0019 18.5 0.2 1.8 8.8 0.2 2.2 2 0 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|118431333|ref|NP_147723.2| - 0.002 18.3 9.2 0.005 17.0 6.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|118431333|ref|NP_147723.2| - 0.002 17.8 1.7 1.4 8.7 0.0 3.7 3 0 0 3 3 3 1 Part of AAA domain AAA_30 PF13604.1 gi|118431333|ref|NP_147723.2| - 0.002 17.7 0.0 0.63 9.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain Fer4_3 PF12798.2 gi|118431333|ref|NP_147723.2| - 0.0034 17.8 5.2 0.0034 17.8 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain RNA_helicase PF00910.17 gi|118431333|ref|NP_147723.2| - 0.0036 17.4 0.0 1.3 9.2 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_16 PF13191.1 gi|118431333|ref|NP_147723.2| - 0.0038 17.2 4.9 0.31 10.9 0.3 3.1 2 2 0 3 3 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|118431333|ref|NP_147723.2| - 0.0038 17.1 0.0 0.56 10.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain Fer4_8 PF13183.1 gi|118431333|ref|NP_147723.2| - 0.0043 17.0 4.6 0.009 16.0 3.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF258 PF03193.11 gi|118431333|ref|NP_147723.2| - 0.0047 16.1 0.0 2.6 7.1 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Fer4_4 PF12800.2 gi|118431333|ref|NP_147723.2| - 0.0073 16.5 3.0 0.0073 16.5 2.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain PRK PF00485.13 gi|118431333|ref|NP_147723.2| - 0.0084 15.6 0.0 0.072 12.6 0.0 2.2 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family SRP54 PF00448.17 gi|118431333|ref|NP_147723.2| - 0.013 14.9 2.9 1.5 8.2 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.12 gi|118431333|ref|NP_147723.2| - 0.017 14.5 0.0 5.5 6.3 0.0 2.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_28 PF13521.1 gi|118431333|ref|NP_147723.2| - 0.018 15.0 0.4 7.5 6.4 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_5 PF07728.9 gi|118431333|ref|NP_147723.2| - 0.019 14.6 1.6 2.9 7.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|118431333|ref|NP_147723.2| - 0.04 13.5 0.7 1.3 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|118431333|ref|NP_147723.2| - 0.057 13.1 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase Fer4_11 PF13247.1 gi|118431333|ref|NP_147723.2| - 0.091 12.6 2.9 0.16 11.8 2.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain NB-ARC PF00931.17 gi|118431333|ref|NP_147723.2| - 0.16 10.8 2.1 5.6 5.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain ArgK PF03308.11 gi|118431333|ref|NP_147723.2| - 0.19 10.4 2.0 7.8 5.1 0.2 2.4 2 0 0 2 2 2 0 ArgK protein Fer4_17 PF13534.1 gi|118431333|ref|NP_147723.2| - 0.3 11.4 8.0 0.18 12.1 1.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|118431333|ref|NP_147723.2| - 0.32 9.3 0.1 2.4 6.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|118431333|ref|NP_147723.2| - 0.34 9.5 0.0 13 4.3 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein FtsK_SpoIIIE PF01580.13 gi|118431333|ref|NP_147723.2| - 0.35 10.3 3.7 4.6 6.6 0.0 2.8 3 0 0 3 3 3 0 FtsK/SpoIIIE family KaiC PF06745.8 gi|118431333|ref|NP_147723.2| - 0.42 9.6 2.4 6.5 5.8 0.2 2.7 3 0 0 3 3 3 0 KaiC Fer4_15 PF13459.1 gi|118431333|ref|NP_147723.2| - 0.81 10.3 8.4 0.08 13.5 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|118431333|ref|NP_147723.2| - 1.9 8.9 10.3 0.41 11.0 2.5 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain AFP PF02420.10 gi|118431333|ref|NP_147723.2| - 2.6 8.4 4.2 5.4 7.4 2.9 1.5 1 0 0 1 1 1 0 Insect antifreeze protein repeat DUF1512 PF07431.7 gi|118431334|ref|NP_147725.2| - 2.5e-161 536.3 6.0 2.8e-161 536.1 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) tRNA-synt_1g PF09334.6 gi|14601199|ref|NP_147731.1| - 1.3e-150 501.4 0.0 1.5e-150 501.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|14601199|ref|NP_147731.1| - 3.5e-15 55.0 0.0 2.4e-08 32.4 0.0 3.5 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|14601199|ref|NP_147731.1| - 3.9e-09 36.4 0.0 7.4e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|14601199|ref|NP_147731.1| - 0.0029 16.7 0.0 0.11 11.6 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|14601199|ref|NP_147731.1| - 0.019 14.7 4.5 0.037 13.8 3.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon TerY-C PF15616.1 gi|14601199|ref|NP_147731.1| - 0.096 12.6 1.2 0.19 11.6 0.8 1.5 1 0 0 1 1 1 0 TerY-C metal binding domain RNA_POL_M_15KD PF02150.11 gi|14601199|ref|NP_147731.1| - 0.72 9.5 4.7 3.8 7.2 1.6 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S24e PF01282.14 gi|118431335|ref|NP_147732.2| - 5.4e-20 70.9 0.0 6.5e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e HTH_19 PF12844.2 gi|118431335|ref|NP_147732.2| - 0.044 13.8 0.0 0.08 13.0 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S27 PF01599.14 gi|118431336|ref|YP_874875.1| - 1.6e-09 37.4 3.8 2.3e-09 36.9 2.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|118431336|ref|YP_874875.1| - 4.1e-05 23.3 2.2 4.6e-05 23.1 1.5 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|118431336|ref|YP_874875.1| - 0.00028 20.4 0.9 0.00032 20.2 0.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|118431336|ref|YP_874875.1| - 0.0073 16.0 0.5 0.0098 15.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|118431336|ref|YP_874875.1| - 0.0092 15.9 1.8 0.99 9.3 0.1 2.1 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|118431336|ref|YP_874875.1| - 0.013 15.2 0.2 0.028 14.1 0.1 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|118431336|ref|YP_874875.1| - 0.014 15.3 1.0 0.025 14.4 0.7 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF2082 PF09855.4 gi|118431336|ref|YP_874875.1| - 0.022 14.6 3.3 0.14 11.9 0.3 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|118431336|ref|YP_874875.1| - 0.027 13.6 2.2 0.93 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|118431336|ref|YP_874875.1| - 0.03 13.8 5.2 0.16 11.5 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-Sec23_Sec24 PF04810.10 gi|118431336|ref|YP_874875.1| - 0.03 13.8 0.9 0.05 13.1 0.6 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger Auto_anti-p27 PF06677.7 gi|118431336|ref|YP_874875.1| - 0.074 12.8 2.3 1 9.1 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ISL3 PF14690.1 gi|118431336|ref|YP_874875.1| - 0.075 13.0 7.5 0.13 12.3 0.5 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|118431336|ref|YP_874875.1| - 0.091 12.2 1.4 1.9 8.0 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.15 gi|118431336|ref|YP_874875.1| - 0.11 12.4 2.2 4.8 7.1 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin A2L_zn_ribbon PF08792.5 gi|118431336|ref|YP_874875.1| - 0.11 11.9 0.4 4.9 6.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain RNHCP PF12647.2 gi|118431336|ref|YP_874875.1| - 0.12 12.2 1.4 0.14 11.9 1.0 1.1 1 0 0 1 1 1 0 RNHCP domain Nudix_N_2 PF14803.1 gi|118431336|ref|YP_874875.1| - 0.16 11.7 3.5 0.7 9.6 2.4 1.9 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|118431336|ref|YP_874875.1| - 0.2 11.2 3.8 2.4 7.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|118431336|ref|YP_874875.1| - 0.24 11.1 0.1 0.24 11.1 0.1 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RanBP PF00641.13 gi|118431336|ref|YP_874875.1| - 0.32 10.1 3.3 0.92 8.6 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Ribosomal_L37e PF01907.14 gi|118431336|ref|YP_874875.1| - 0.36 10.6 4.3 0.61 9.9 3.0 1.5 1 1 0 1 1 1 0 Ribosomal protein L37e TFIIS_C PF01096.13 gi|118431336|ref|YP_874875.1| - 0.56 9.8 2.8 9.8 5.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) ADK_lid PF05191.9 gi|118431336|ref|YP_874875.1| - 0.63 9.7 3.4 2 8.1 2.4 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-tcix PF14952.1 gi|118431336|ref|YP_874875.1| - 0.68 9.3 4.4 0.55 9.6 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TF_Zn_Ribbon PF08271.7 gi|118431336|ref|YP_874875.1| - 0.83 9.0 4.7 2.5 7.4 0.3 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|118431336|ref|YP_874875.1| - 0.89 8.8 3.6 3.2 7.0 2.5 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS91 PF14319.1 gi|118431336|ref|YP_874875.1| - 0.93 9.0 4.7 8.1 6.0 0.5 2.0 1 1 1 2 2 2 0 Transposase zinc-binding domain Zn_ribbon_recom PF13408.1 gi|118431336|ref|YP_874875.1| - 1.1 9.6 6.3 4.7 7.5 4.4 2.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.5 gi|118431336|ref|YP_874875.1| - 2.5 8.1 5.7 4.4 7.3 0.3 2.2 1 1 0 2 2 2 0 Zinc ribbon domain Peptidase_M22 PF00814.20 gi|14601201|ref|NP_147734.1| - 6.3e-70 235.7 0.2 7.6e-70 235.4 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family DUF348 PF03990.9 gi|14601201|ref|NP_147734.1| - 0.42 10.2 2.3 0.38 10.3 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF348) APH PF01636.18 gi|118431337|ref|NP_147735.2| - 7.1e-09 35.7 1.2 0.00012 21.9 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|118431337|ref|NP_147735.2| - 6.7e-07 28.8 0.0 9.7e-07 28.3 0.0 1.3 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.6 gi|118431337|ref|NP_147735.2| - 0.00013 21.2 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|118431337|ref|NP_147735.2| - 0.0053 15.9 0.0 0.0072 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|118431337|ref|NP_147735.2| - 0.0093 15.0 0.0 0.11 11.5 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Ham1p_like PF01725.11 gi|118431338|ref|NP_147736.2| - 5.2e-49 166.1 0.0 5.8e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_S13_N PF08069.7 gi|14601204|ref|NP_147737.1| - 6.4e-25 86.7 0.0 1.8e-24 85.3 0.0 1.8 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|14601204|ref|NP_147737.1| - 3.6e-21 74.7 0.0 5e-21 74.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 AA_kinase PF00696.23 gi|118431339|ref|NP_147738.2| - 1.4e-43 149.2 0.0 2.3e-43 148.4 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.20 gi|118431339|ref|NP_147738.2| - 8.4e-09 34.7 0.1 3.5e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|118431339|ref|NP_147738.2| - 4.7e-05 22.8 0.0 0.00031 20.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain Semialdhyde_dhC PF02774.13 gi|14601206|ref|NP_147739.1| - 1.3e-32 113.1 0.0 1.8e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|14601206|ref|NP_147739.1| - 7.4e-27 94.0 0.0 1.2e-26 93.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|14601206|ref|NP_147739.1| - 0.061 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Homoserine_dh PF00742.14 gi|118431340|ref|NP_147740.2| - 5.3e-37 127.2 0.0 6.6e-37 126.9 0.0 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase Pcc1 PF09341.5 gi|118431342|ref|YP_874876.1| - 0.091 12.8 0.0 0.14 12.1 0.0 1.4 1 1 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|118431343|ref|NP_147748.2| - 1.5e-71 239.8 0.0 1.7e-71 239.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ELYS PF13934.1 gi|118431343|ref|NP_147748.2| - 0.00047 19.9 0.0 0.00062 19.5 0.0 1.2 1 0 0 1 1 1 1 Nuclear pore complex assembly SPOUT_MTase_2 PF14419.1 gi|118431344|ref|NP_147749.2| - 4.6e-77 257.1 0.4 6.4e-77 256.6 0.2 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|118431344|ref|NP_147749.2| - 3e-28 98.5 0.0 5.3e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Radical_SAM PF04055.16 gi|118431345|ref|NP_147750.2| - 2.9e-12 47.0 0.0 5.7e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|118431345|ref|NP_147750.2| - 0.0059 16.4 0.1 0.017 14.9 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain RNase_P_Rpp14 PF01900.14 gi|118431346|ref|NP_147751.2| - 3.9e-14 52.4 0.0 4.8e-14 52.1 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family GAF_2 PF13185.1 gi|118431346|ref|NP_147751.2| - 0.033 14.6 0.2 0.041 14.3 0.2 1.2 1 0 0 1 1 1 0 GAF domain MMR_HSR1_C PF08438.5 gi|14601219|ref|NP_147752.1| - 1.1e-33 115.7 0.0 1.7e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal TGS PF02824.16 gi|14601219|ref|NP_147752.1| - 2.7e-17 62.3 0.0 5.1e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|14601219|ref|NP_147752.1| - 4.9e-16 58.7 0.0 1.3e-15 57.4 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|14601219|ref|NP_147752.1| - 2.8e-06 26.7 0.1 0.00023 20.4 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.8 gi|14601219|ref|NP_147752.1| - 0.013 15.2 0.1 0.93 9.3 0.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF933) AAA_29 PF13555.1 gi|14601219|ref|NP_147752.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SBDS PF01172.13 gi|118431347|ref|NP_147753.2| - 9.3e-25 86.2 0.0 1.4e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|118431347|ref|NP_147753.2| - 1.9e-18 66.3 0.0 2.9e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain HI0933_like PF03486.9 gi|118431347|ref|NP_147753.2| - 0.0047 15.4 0.0 0.0069 14.9 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein XkdN PF08890.6 gi|118431347|ref|NP_147753.2| - 0.087 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Phage XkdN-like protein Metallophos_2 PF12850.2 gi|118431348|ref|NP_147754.2| - 4e-29 101.4 0.0 5.8e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|118431348|ref|NP_147754.2| - 4.2e-13 49.1 1.3 5.4e-13 48.7 0.1 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase MnhB PF04039.8 gi|118431349|ref|YP_874877.1| - 0.038 14.0 0.2 0.046 13.7 0.2 1.0 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter DUF1206 PF06724.6 gi|118431349|ref|YP_874877.1| - 0.39 10.4 4.7 1.7 8.4 0.9 2.3 1 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) Polysacc_synt PF01943.12 gi|118431351|ref|NP_147759.2| - 0.0011 18.2 31.4 0.0011 18.2 21.7 2.8 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|118431351|ref|NP_147759.2| - 8.7 5.7 57.9 1.1 8.6 27.5 2.4 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein dTDP_sugar_isom PF00908.12 gi|14601228|ref|NP_147761.1| - 1.3e-59 200.4 0.0 1.5e-59 200.3 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.6 gi|14601228|ref|NP_147761.1| - 0.00058 19.3 0.0 0.00097 18.5 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|14601228|ref|NP_147761.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Cupin RmlD_sub_bind PF04321.12 gi|118431352|ref|NP_147762.2| - 4.1e-86 288.4 0.0 4.6e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|118431352|ref|NP_147762.2| - 2.3e-29 102.5 0.0 3.5e-29 101.8 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|118431352|ref|NP_147762.2| - 2.7e-14 52.6 0.0 4.6e-10 38.8 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|118431352|ref|NP_147762.2| - 9.4e-13 47.6 0.0 7.3e-11 41.4 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|118431352|ref|NP_147762.2| - 5.1e-10 38.5 0.0 7.2e-10 38.0 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|118431352|ref|NP_147762.2| - 3.3e-09 36.9 0.0 5.2e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|118431352|ref|NP_147762.2| - 3.6e-05 23.7 0.3 0.00024 21.0 0.1 2.2 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|118431352|ref|NP_147762.2| - 0.0049 16.1 0.0 0.021 14.0 0.0 1.9 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|118431352|ref|NP_147762.2| - 0.01 15.5 0.7 1 8.9 0.1 3.1 3 0 0 3 3 3 1 KR domain Epimerase PF01370.16 gi|14601230|ref|NP_147763.1| - 1.6e-69 233.9 0.0 1.9e-69 233.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|14601230|ref|NP_147763.1| - 1.9e-24 86.0 0.0 2.3e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|14601230|ref|NP_147763.1| - 7.3e-18 64.2 0.0 9.1e-18 63.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|14601230|ref|NP_147763.1| - 7.9e-17 61.0 0.0 4.5e-16 58.5 0.0 1.9 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|14601230|ref|NP_147763.1| - 5.9e-16 58.2 0.0 6.8e-15 54.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|14601230|ref|NP_147763.1| - 3.8e-06 26.9 0.0 1e-05 25.5 0.0 1.6 2 0 0 2 2 2 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|14601230|ref|NP_147763.1| - 0.00063 18.8 0.0 0.00096 18.2 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|14601230|ref|NP_147763.1| - 0.0011 18.9 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|14601230|ref|NP_147763.1| - 0.0019 17.8 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 KR domain DapB_N PF01113.15 gi|14601230|ref|NP_147763.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NTP_transferase PF00483.18 gi|14601231|ref|NP_147764.1| - 1.5e-42 145.5 0.0 1.9e-42 145.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|14601231|ref|NP_147764.1| - 1.1e-10 41.8 0.0 1.6e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|14601231|ref|NP_147764.1| - 0.0031 17.0 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.8 gi|14601231|ref|NP_147764.1| - 0.0035 17.3 2.4 0.01 15.8 1.3 1.9 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|14601231|ref|NP_147764.1| - 0.52 9.9 3.0 3.8 7.1 0.6 3.2 2 1 1 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Phosphodiest PF01663.17 gi|14601232|ref|NP_147765.1| - 4.6e-73 246.6 0.0 1.1e-72 245.3 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Methyltransf_11 PF08241.7 gi|14601233|ref|NP_147766.1| - 7.3e-15 55.2 0.0 1.7e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|14601233|ref|NP_147766.1| - 2.8e-10 40.1 0.0 4.9e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|14601233|ref|NP_147766.1| - 6e-08 32.4 0.0 1.1e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|14601233|ref|NP_147766.1| - 2.2e-07 31.2 0.0 8.9e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|14601233|ref|NP_147766.1| - 3.9e-06 26.1 0.0 1e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|14601233|ref|NP_147766.1| - 1.7e-05 24.5 0.0 3.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|14601233|ref|NP_147766.1| - 0.0051 15.5 0.0 0.0077 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_25 PF13649.1 gi|14601233|ref|NP_147766.1| - 0.022 15.1 0.0 0.073 13.4 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|14601233|ref|NP_147766.1| - 0.047 14.2 0.0 0.13 12.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|14601233|ref|NP_147766.1| - 0.12 10.6 0.0 0.14 10.4 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Glycos_transf_2 PF00535.21 gi|14601234|ref|NP_147767.1| - 9e-17 61.2 0.3 1.5e-16 60.5 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|14601234|ref|NP_147767.1| - 5.5e-11 42.7 0.0 8.3e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|14601234|ref|NP_147767.1| - 0.025 14.3 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Anp1 PF03452.9 gi|14601234|ref|NP_147767.1| - 0.033 13.3 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Anp1 Glycos_transf_1 PF00534.15 gi|118431353|ref|NP_147768.2| - 2e-06 27.3 0.0 6.3e-06 25.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|14601237|ref|NP_147770.1| - 5.1e-10 39.6 0.0 1.1e-09 38.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|14601237|ref|NP_147770.1| - 5.1e-09 35.7 0.0 1e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Mrr_cat PF04471.7 gi|14601237|ref|NP_147770.1| - 0.15 11.9 0.2 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Restriction endonuclease Glyco_trans_4_4 PF13579.1 gi|14601237|ref|NP_147770.1| - 0.2 11.7 0.0 0.33 11.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.21 gi|14602202|ref|NP_147771.1| - 3.5e-27 95.1 0.0 5.5e-27 94.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|14602202|ref|NP_147771.1| - 1e-11 45.1 0.0 3e-11 43.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|14602202|ref|NP_147771.1| - 0.057 13.7 0.0 0.13 12.6 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 Methyltransf_21 PF05050.7 gi|118431355|ref|NP_147772.2| - 7.1e-18 65.0 0.0 8.6e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|118431355|ref|NP_147772.2| - 0.00036 20.1 0.0 0.00046 19.8 0.0 1.3 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|118431355|ref|NP_147772.2| - 0.0013 19.3 0.0 0.0019 18.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|14601239|ref|NP_147773.1| - 1e-42 145.4 0.0 1.5e-42 144.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|14601239|ref|NP_147773.1| - 4.5e-24 85.1 0.2 7.5e-24 84.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|14601239|ref|NP_147773.1| - 3.4e-20 72.5 0.0 5.5e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|14601239|ref|NP_147773.1| - 6.2e-16 58.9 0.7 1.1e-15 58.1 0.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|14601239|ref|NP_147773.1| - 5.3e-12 45.8 0.0 1.2e-11 44.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|14601240|ref|NP_147774.1| - 1.5e-10 41.0 0.0 2.2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|14601240|ref|NP_147774.1| - 2.6e-07 30.7 0.0 8.3e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|14601240|ref|NP_147774.1| - 0.00018 20.7 0.1 0.00021 20.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|14601240|ref|NP_147774.1| - 0.017 14.3 0.1 0.067 12.4 0.0 2.0 1 1 1 2 2 2 0 Glycosyl transferase family 21 DUF4131 PF13567.1 gi|118431357|ref|NP_147776.2| - 0.017 14.4 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2254 PF10011.4 gi|118431357|ref|NP_147776.2| - 0.053 11.9 0.1 0.077 11.4 0.1 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2254) PIG-P PF08510.7 gi|118431357|ref|NP_147776.2| - 0.11 12.1 0.1 0.41 10.2 0.1 1.8 1 1 0 1 1 1 0 PIG-P RPN7 PF10602.4 gi|118431357|ref|NP_147776.2| - 0.14 11.5 3.5 0.19 11.1 2.4 1.2 1 0 0 1 1 1 0 26S proteasome subunit RPN7 OAD_gamma PF04277.8 gi|118431357|ref|NP_147776.2| - 0.38 11.1 0.0 0.38 11.1 0.0 2.0 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain IncA PF04156.9 gi|118431357|ref|NP_147776.2| - 1.9 8.0 4.9 5 6.6 3.4 1.7 1 1 0 1 1 1 0 IncA protein APS_kinase PF01583.15 gi|118431358|ref|NP_147777.2| - 6.6e-59 198.0 0.0 7.6e-59 197.8 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.5 gi|118431358|ref|NP_147777.2| - 1.7e-12 47.1 0.0 1.9e-12 46.9 0.0 1.0 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|118431358|ref|NP_147777.2| - 4.2e-11 42.9 0.0 5e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118431358|ref|NP_147777.2| - 8.5e-09 35.7 0.0 1.3e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118431358|ref|NP_147777.2| - 3e-08 34.5 0.1 4.6e-08 33.8 0.1 1.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|118431358|ref|NP_147777.2| - 6.9e-06 25.6 0.0 1.4e-05 24.6 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|118431358|ref|NP_147777.2| - 7e-06 25.5 0.0 9.1e-06 25.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|118431358|ref|NP_147777.2| - 7.8e-06 24.8 0.0 1.1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|118431358|ref|NP_147777.2| - 2.7e-05 23.8 0.5 0.00022 20.8 0.0 2.2 2 1 0 2 2 2 1 Part of AAA domain NTPase_1 PF03266.10 gi|118431358|ref|NP_147777.2| - 4.3e-05 23.2 0.1 0.00011 22.0 0.0 1.6 2 0 0 2 2 2 1 NTPase cobW PF02492.14 gi|118431358|ref|NP_147777.2| - 4.5e-05 22.9 0.0 6.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|118431358|ref|NP_147777.2| - 8e-05 22.6 0.3 0.00037 20.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|118431358|ref|NP_147777.2| - 0.00011 21.8 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|118431358|ref|NP_147777.2| - 0.00033 20.3 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|118431358|ref|NP_147777.2| - 0.00047 19.8 0.1 0.00098 18.8 0.0 1.5 2 0 0 2 2 1 1 NACHT domain AAA_16 PF13191.1 gi|118431358|ref|NP_147777.2| - 0.00073 19.5 0.2 0.0031 17.5 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|118431358|ref|NP_147777.2| - 0.001 18.8 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SKI PF01202.17 gi|118431358|ref|NP_147777.2| - 0.001 18.9 0.0 0.0029 17.4 0.0 1.8 2 0 0 2 2 2 1 Shikimate kinase AAA_22 PF13401.1 gi|118431358|ref|NP_147777.2| - 0.0014 18.7 0.1 0.0025 17.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|118431358|ref|NP_147777.2| - 0.002 17.2 0.0 0.0043 16.1 0.0 1.5 1 1 1 2 2 2 1 Zeta toxin 6PF2K PF01591.13 gi|118431358|ref|NP_147777.2| - 0.003 16.6 0.0 0.0058 15.7 0.0 1.7 1 1 0 1 1 1 1 6-phosphofructo-2-kinase Thymidylate_kin PF02223.12 gi|118431358|ref|NP_147777.2| - 0.003 16.9 0.0 0.0061 15.9 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase ABC_tran PF00005.22 gi|118431358|ref|NP_147777.2| - 0.0046 17.2 0.0 0.0097 16.2 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA PF00004.24 gi|118431358|ref|NP_147777.2| - 0.0051 17.0 0.0 0.013 15.6 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|118431358|ref|NP_147777.2| - 0.0053 16.6 0.0 0.01 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|118431358|ref|NP_147777.2| - 0.0054 15.9 0.0 0.01 14.9 0.0 1.5 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.12 gi|118431358|ref|NP_147777.2| - 0.0068 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein HGD-D PF06050.8 gi|118431358|ref|NP_147777.2| - 0.0081 15.0 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component CoaE PF01121.15 gi|118431358|ref|NP_147777.2| - 0.0083 15.5 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Dephospho-CoA kinase UPF0079 PF02367.12 gi|118431358|ref|NP_147777.2| - 0.018 14.6 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|118431358|ref|NP_147777.2| - 0.021 14.9 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Cytidylate_kin2 PF13189.1 gi|118431358|ref|NP_147777.2| - 0.022 14.6 0.0 0.046 13.6 0.0 1.7 1 1 0 1 1 1 0 Cytidylate kinase-like family AAA_25 PF13481.1 gi|118431358|ref|NP_147777.2| - 0.027 13.8 0.5 0.064 12.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|118431358|ref|NP_147777.2| - 0.035 14.0 0.0 0.074 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|118431358|ref|NP_147777.2| - 0.038 13.4 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain MipZ PF09140.6 gi|118431358|ref|NP_147777.2| - 0.045 12.8 0.0 0.062 12.3 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ LpxK PF02606.9 gi|118431358|ref|NP_147777.2| - 0.05 12.5 0.0 0.075 11.9 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase IstB_IS21 PF01695.12 gi|118431358|ref|NP_147777.2| - 0.053 12.9 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein DUF2075 PF09848.4 gi|118431358|ref|NP_147777.2| - 0.075 11.9 0.0 0.097 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IPT PF01745.11 gi|118431358|ref|NP_147777.2| - 0.096 11.8 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase AAA_3 PF07726.6 gi|118431358|ref|NP_147777.2| - 0.099 12.2 0.0 0.2 11.2 0.0 1.5 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|118431358|ref|NP_147777.2| - 0.15 11.6 0.1 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain TauE PF01925.14 gi|118431359|ref|NP_147778.2| - 1.8e-24 86.5 33.4 2.1e-24 86.3 23.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE ATP-sulfurylase PF01747.12 gi|118431360|ref|NP_147779.2| - 2.7e-90 301.4 0.1 3.6e-90 300.9 0.1 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|118431360|ref|NP_147779.2| - 3.5e-48 163.0 0.0 7.8e-48 161.8 0.0 1.6 2 0 0 2 2 2 1 PUA-like domain Phosphodiest PF01663.17 gi|14601246|ref|NP_147780.1| - 3e-57 194.5 0.0 3.6e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|14601246|ref|NP_147780.1| - 0.0045 16.2 0.0 0.0086 15.2 0.0 1.4 1 0 0 1 1 1 1 Sulfatase NTP_transferase PF00483.18 gi|118431361|ref|NP_147781.2| - 3e-24 85.6 0.0 3.9e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|118431361|ref|NP_147781.2| - 4.6e-16 57.5 16.5 1.4e-06 27.4 0.7 3.9 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|118431361|ref|NP_147781.2| - 1e-10 41.9 0.3 1.4e-10 41.4 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|118431361|ref|NP_147781.2| - 0.0093 15.5 4.4 0.71 9.4 0.3 3.5 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|118431362|ref|NP_147783.2| - 6e-41 139.1 0.0 3.8e-27 94.4 0.0 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|118431362|ref|NP_147783.2| - 2.9e-22 79.0 0.2 7.4e-22 77.7 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|118431362|ref|NP_147783.2| - 3.5e-19 68.7 0.1 7.6e-15 54.4 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|118431362|ref|NP_147783.2| - 5.1e-16 58.5 0.0 2.5e-15 56.3 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|118431362|ref|NP_147783.2| - 0.00016 20.4 0.0 0.00021 20.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.4 gi|118431362|ref|NP_147783.2| - 0.0044 16.7 0.0 0.024 14.3 0.0 2.2 2 1 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region SIS_2 PF13580.1 gi|118431362|ref|NP_147783.2| - 0.0048 16.6 0.2 0.082 12.6 0.0 2.5 2 0 0 2 2 2 1 SIS domain Abhydrolase_5 PF12695.2 gi|118431362|ref|NP_147783.2| - 0.018 14.8 1.6 0.029 14.1 0.3 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase family Glyco_transf_4 PF13439.1 gi|118431362|ref|NP_147783.2| - 0.038 13.7 0.2 14 5.3 0.1 3.1 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Hexapep PF00132.19 gi|118431363|ref|NP_147784.2| - 3.2e-15 54.8 4.5 3.7e-05 23.0 0.1 4.4 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|118431363|ref|NP_147784.2| - 1.1e-11 45.0 1.3 2.8e-11 43.7 0.2 2.0 2 1 0 2 2 2 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|118431363|ref|NP_147784.2| - 3.6e-09 36.2 0.0 1.9e-08 33.9 0.0 2.0 3 0 0 3 3 3 1 Nucleotidyl transferase Hexapep_2 PF14602.1 gi|118431363|ref|NP_147784.2| - 2.6e-06 26.8 8.7 0.053 13.0 1.6 4.0 4 1 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|118431363|ref|NP_147784.2| - 0.006 16.1 0.0 0.008 15.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Acyl-CoA_dh_N PF02771.11 gi|118431364|ref|YP_874878.1| - 1.1e-05 25.9 0.0 1.2e-05 25.8 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain PIN PF01850.16 gi|118431365|ref|YP_874879.1| - 6.2e-18 65.2 0.8 7.7e-18 64.9 0.6 1.1 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|118431366|ref|NP_147787.2| - 2.2e-17 62.8 2.5 2.6e-17 62.5 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Phospholamban PF04272.9 gi|14601253|ref|NP_147788.1| - 0.037 13.4 0.2 0.037 13.4 0.1 1.5 2 0 0 2 2 2 0 Phospholamban Acyl-CoA_dh_1 PF00441.19 gi|118431367|ref|YP_874880.1| - 7.7e-18 65.0 1.2 8.1e-18 64.9 0.8 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|118431367|ref|YP_874880.1| - 0.0036 17.5 0.4 0.0045 17.2 0.3 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|118431368|ref|YP_874881.1| - 0.0048 16.9 0.1 0.0049 16.9 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Baculo_PEP_C PF04513.7 gi|118431369|ref|NP_147790.2| - 0.0085 15.9 0.2 0.019 14.7 0.2 1.5 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus RPOL_N PF14700.1 gi|118431369|ref|NP_147790.2| - 0.063 12.5 0.0 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 DNA-directed RNA polymerase N-terminal DUF3818 PF12825.2 gi|118431369|ref|NP_147790.2| - 0.11 11.1 0.3 0.29 9.7 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) HTH_20 PF12840.2 gi|118431370|ref|NP_147791.2| - 0.00014 21.5 1.0 0.00021 20.9 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TMF_DNA_bd PF12329.3 gi|118431370|ref|NP_147791.2| - 0.099 12.4 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HTH_5 PF01022.15 gi|118431370|ref|NP_147791.2| - 0.48 10.1 2.0 29 4.4 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Peptidase_S8 PF00082.17 gi|118431371|ref|NP_147793.2| - 6.7e-22 77.9 0.0 5.9e-21 74.8 0.0 2.4 1 1 0 1 1 1 1 Subtilase family VCBS PF13517.1 gi|118431371|ref|NP_147793.2| - 0.55 10.6 5.4 6 7.2 0.1 3.5 3 1 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Reo_sigmaC PF04582.7 gi|14601261|ref|NP_147796.1| - 3.9e-15 55.8 25.9 4.6e-09 35.9 9.8 3.1 1 1 2 3 3 3 2 Reovirus sigma C capsid protein Tropomyosin_1 PF12718.2 gi|14601261|ref|NP_147796.1| - 7.7e-13 48.5 30.6 9.5e-08 31.9 9.9 4.0 1 1 1 3 3 3 3 Tropomyosin like AAA_13 PF13166.1 gi|14601261|ref|NP_147796.1| - 4.9e-12 45.1 4.3 4.9e-12 45.1 2.9 2.1 1 1 1 2 2 2 1 AAA domain IncA PF04156.9 gi|14601261|ref|NP_147796.1| - 1.7e-11 44.1 73.7 7.7e-07 28.8 8.7 3.8 1 1 2 3 3 3 3 IncA protein Myosin_tail_1 PF01576.14 gi|14601261|ref|NP_147796.1| - 6.2e-11 40.7 31.7 5.3e-10 37.7 22.0 1.8 1 1 0 1 1 1 1 Myosin tail CENP-F_leu_zip PF10473.4 gi|14601261|ref|NP_147796.1| - 9.1e-11 41.7 37.3 2.9e-05 23.9 7.7 3.2 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin PF00261.15 gi|14601261|ref|NP_147796.1| - 3e-10 39.6 33.5 1.4e-06 27.6 9.7 3.0 1 1 2 3 3 3 2 Tropomyosin TBPIP PF07106.8 gi|14601261|ref|NP_147796.1| - 3.8e-10 39.5 23.4 5.8e-05 22.7 5.5 4.1 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_I PF06008.9 gi|14601261|ref|NP_147796.1| - 4e-10 39.4 25.4 6e-10 38.8 17.6 1.3 1 0 0 1 1 1 1 Laminin Domain I Baculo_PEP_C PF04513.7 gi|14601261|ref|NP_147796.1| - 5.2e-10 39.3 23.2 0.0001 22.1 8.9 4.0 1 1 3 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.16 gi|14601261|ref|NP_147796.1| - 5.5e-10 39.2 26.1 0.00021 20.8 8.4 3.3 1 1 2 3 3 3 2 Intermediate filament protein ATG16 PF08614.6 gi|14601261|ref|NP_147796.1| - 1.3e-09 38.1 34.6 0.00012 22.0 3.6 4.0 1 1 3 4 4 4 2 Autophagy protein 16 (ATG16) FlaC_arch PF05377.6 gi|14601261|ref|NP_147796.1| - 2.3e-09 36.9 18.3 0.11 12.4 0.0 7.3 1 1 7 8 8 8 3 Flagella accessory protein C (FlaC) ADIP PF11559.3 gi|14601261|ref|NP_147796.1| - 2.9e-09 37.0 27.8 0.0024 17.8 4.7 3.7 1 1 2 3 3 3 3 Afadin- and alpha -actinin-Binding DUF1664 PF07889.7 gi|14601261|ref|NP_147796.1| - 3.4e-09 36.5 30.7 0.0003 20.5 3.2 4.3 1 1 5 6 6 6 4 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|14601261|ref|NP_147796.1| - 4.3e-09 36.2 25.8 0.00062 19.5 4.7 4.2 1 1 3 4 4 4 2 Laminin Domain II Spc7 PF08317.6 gi|14601261|ref|NP_147796.1| - 1.1e-08 34.2 26.0 2.1e-05 23.3 9.0 3.2 1 1 2 3 3 3 2 Spc7 kinetochore protein SlyX PF04102.7 gi|14601261|ref|NP_147796.1| - 1.5e-08 34.8 41.2 0.00011 22.5 0.8 5.7 1 1 6 7 7 7 4 SlyX NPV_P10 PF05531.7 gi|14601261|ref|NP_147796.1| - 1.7e-08 34.5 27.7 0.12 12.6 6.0 5.5 1 1 3 4 4 4 1 Nucleopolyhedrovirus P10 protein TMF_DNA_bd PF12329.3 gi|14601261|ref|NP_147796.1| - 2.2e-08 33.7 34.6 0.0001 22.0 0.4 5.2 1 1 4 5 5 5 2 TATA element modulatory factor 1 DNA binding DUF869 PF05911.6 gi|14601261|ref|NP_147796.1| - 2.2e-08 32.8 22.9 0.00027 19.3 12.4 2.2 1 1 1 2 2 2 2 Plant protein of unknown function (DUF869) DUF4201 PF13870.1 gi|14601261|ref|NP_147796.1| - 2.2e-08 33.7 17.3 0.00021 20.7 8.7 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) MscS_porin PF12795.2 gi|14601261|ref|NP_147796.1| - 2.6e-08 33.4 48.7 0.0005 19.4 7.4 4.1 1 1 3 4 4 4 2 Mechanosensitive ion channel porin domain Prefoldin_2 PF01920.15 gi|14601261|ref|NP_147796.1| - 9.7e-08 31.7 26.8 0.034 13.8 0.8 6.0 1 1 3 5 5 5 2 Prefoldin subunit Nup54 PF13874.1 gi|14601261|ref|NP_147796.1| - 1.7e-07 30.9 24.0 0.00019 21.1 1.6 3.2 1 1 2 3 3 3 3 Nucleoporin complex subunit 54 APG6 PF04111.7 gi|14601261|ref|NP_147796.1| - 8.8e-07 28.2 25.3 1.4e-05 24.3 4.3 2.4 1 1 1 2 2 2 2 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|14601261|ref|NP_147796.1| - 1.3e-06 28.5 15.5 0.0038 17.3 7.6 3.5 1 1 3 4 4 4 2 Fibrinogen alpha/beta chain family Uds1 PF15456.1 gi|14601261|ref|NP_147796.1| - 1.7e-06 28.0 28.3 0.00086 19.2 0.4 3.8 1 1 1 4 4 3 2 Up-regulated During Septation EzrA PF06160.7 gi|14601261|ref|NP_147796.1| - 1.8e-06 26.4 20.1 6.8e-05 21.2 13.7 2.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA GAS PF13851.1 gi|14601261|ref|NP_147796.1| - 2.7e-06 26.7 21.3 0.00027 20.2 1.5 3.0 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding Tektin PF03148.9 gi|14601261|ref|NP_147796.1| - 4.7e-06 25.4 24.1 0.00019 20.1 8.6 4.2 1 1 2 3 3 3 1 Tektin family DUF4200 PF13863.1 gi|14601261|ref|NP_147796.1| - 5.5e-06 26.3 22.5 0.018 15.0 4.1 4.1 1 1 3 4 4 4 2 Domain of unknown function (DUF4200) HrpB7 PF09486.5 gi|14601261|ref|NP_147796.1| - 6.2e-06 26.2 35.1 0.0016 18.4 10.7 4.4 1 1 3 4 4 4 2 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.4 gi|14601261|ref|NP_147796.1| - 9.2e-06 24.8 23.4 0.0036 16.3 6.6 2.6 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 WEMBL PF05701.6 gi|14601261|ref|NP_147796.1| - 1.2e-05 24.0 34.8 0.0012 17.4 11.7 2.3 1 1 1 2 2 2 2 Weak chloroplast movement under blue light FliJ PF02050.11 gi|14601261|ref|NP_147796.1| - 1.3e-05 25.2 25.2 0.0062 16.5 9.4 3.6 1 1 2 3 3 3 2 Flagellar FliJ protein DUF972 PF06156.8 gi|14601261|ref|NP_147796.1| - 1.4e-05 25.3 23.5 0.16 12.3 1.0 4.6 1 1 3 4 4 4 2 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|14601261|ref|NP_147796.1| - 1.5e-05 22.5 31.0 4.2e-05 21.1 21.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) Prefoldin PF02996.12 gi|14601261|ref|NP_147796.1| - 1.6e-05 24.5 26.3 0.41 10.3 1.1 6.3 1 1 5 7 7 6 2 Prefoldin subunit AAA_27 PF13514.1 gi|14601261|ref|NP_147796.1| - 1.6e-05 22.8 36.2 6.2e-05 20.9 20.3 2.2 1 1 1 2 2 2 1 AAA domain RmuC PF02646.11 gi|14601261|ref|NP_147796.1| - 2e-05 23.6 16.8 0.0049 15.7 0.2 4.3 1 1 4 5 5 5 3 RmuC family FH2 PF02181.18 gi|14601261|ref|NP_147796.1| - 2.1e-05 23.6 14.7 0.0016 17.3 0.4 3.1 1 1 2 3 3 3 2 Formin Homology 2 Domain DUF2730 PF10805.3 gi|14601261|ref|NP_147796.1| - 2.2e-05 24.1 20.6 0.035 13.8 0.6 4.5 1 1 4 5 5 5 2 Protein of unknown function (DUF2730) BLOC1_2 PF10046.4 gi|14601261|ref|NP_147796.1| - 2.7e-05 24.2 24.5 0.3 11.2 2.8 5.1 1 1 4 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.17 gi|14601261|ref|NP_147796.1| - 4.2e-05 23.5 23.0 0.079 12.9 3.0 4.8 1 1 4 5 5 5 3 Seryl-tRNA synthetase N-terminal domain PspA_IM30 PF04012.7 gi|14601261|ref|NP_147796.1| - 4.4e-05 22.9 35.2 0.0012 18.2 11.2 4.4 1 1 3 4 4 4 2 PspA/IM30 family Cast PF10174.4 gi|14601261|ref|NP_147796.1| - 4.8e-05 21.6 33.0 0.00028 19.1 22.3 2.1 1 1 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone TPR_MLP1_2 PF07926.7 gi|14601261|ref|NP_147796.1| - 5.2e-05 23.0 31.4 0.00013 21.6 7.6 3.7 1 1 2 3 3 3 1 TPR/MLP1/MLP2-like protein Mod_r PF07200.8 gi|14601261|ref|NP_147796.1| - 7.8e-05 22.6 24.8 0.029 14.2 6.2 3.2 1 1 2 3 3 3 1 Modifier of rudimentary (Mod(r)) protein Matrilin_ccoil PF10393.4 gi|14601261|ref|NP_147796.1| - 8e-05 21.9 27.3 0.032 13.5 1.1 7.8 3 2 6 9 9 9 1 Trimeric coiled-coil oligomerisation domain of matrilin APG17 PF04108.7 gi|14601261|ref|NP_147796.1| - 0.00012 20.9 14.4 0.038 12.8 0.0 2.9 1 1 0 2 2 2 1 Autophagy protein Apg17 COG2 PF06148.6 gi|14601261|ref|NP_147796.1| - 0.00015 21.6 28.2 0.058 13.2 3.7 4.9 1 1 3 4 4 4 2 COG (conserved oligomeric Golgi) complex component, COG2 IFT57 PF10498.4 gi|14601261|ref|NP_147796.1| - 0.00015 20.6 20.9 0.00073 18.3 2.0 2.6 1 1 2 3 3 3 1 Intra-flagellar transport protein 57 MAD PF05557.8 gi|14601261|ref|NP_147796.1| - 0.00015 20.0 31.6 0.00068 17.8 15.3 2.3 1 1 1 2 2 2 1 Mitotic checkpoint protein DUF342 PF03961.8 gi|14601261|ref|NP_147796.1| - 0.00017 20.1 13.8 0.032 12.6 4.8 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF342) WASH_WAHD PF11945.3 gi|14601261|ref|NP_147796.1| - 0.00021 20.7 4.1 0.066 12.4 0.0 3.5 1 1 3 4 4 4 1 WAHD domain of WASH complex XhlA PF10779.4 gi|14601261|ref|NP_147796.1| - 0.00024 20.9 17.8 0.21 11.5 0.9 5.2 1 1 5 6 6 6 2 Haemolysin XhlA Snapin_Pallidin PF14712.1 gi|14601261|ref|NP_147796.1| - 0.00028 21.1 21.9 0.063 13.5 4.9 4.8 1 1 1 4 4 3 2 Snapin/Pallidin Lebercilin PF15619.1 gi|14601261|ref|NP_147796.1| - 0.00033 20.1 28.3 0.0058 16.0 9.7 2.9 1 1 2 3 3 3 2 Ciliary protein causing Leber congenital amaurosis disease Rootletin PF15035.1 gi|14601261|ref|NP_147796.1| - 0.00034 20.6 5.2 0.00034 20.6 3.6 3.0 1 1 2 3 3 2 1 Ciliary rootlet component, centrosome cohesion Bacillus_HBL PF05791.6 gi|14601261|ref|NP_147796.1| - 0.00052 19.4 17.9 0.1 11.9 3.6 3.4 1 1 3 4 4 4 2 Bacillus haemolytic enterotoxin (HBL) EMP24_GP25L PF01105.19 gi|14601261|ref|NP_147796.1| - 0.00067 19.4 19.4 0.67 9.6 0.6 4.7 1 1 3 4 4 4 1 emp24/gp25L/p24 family/GOLD Spectrin PF00435.16 gi|14601261|ref|NP_147796.1| - 0.001 19.3 26.6 0.0035 17.5 2.1 3.4 1 1 1 3 3 3 1 Spectrin repeat Transposase_22 PF02994.9 gi|14601261|ref|NP_147796.1| - 0.0011 17.5 15.4 1.5 7.2 9.2 3.9 1 1 2 3 3 3 0 L1 transposable element BicD PF09730.4 gi|14601261|ref|NP_147796.1| - 0.0011 17.4 14.4 0.0011 17.4 10.0 2.1 1 1 1 2 2 2 1 Microtubule-associated protein Bicaudal-D CENP-Q PF13094.1 gi|14601261|ref|NP_147796.1| - 0.0012 18.8 39.5 0.13 12.2 5.2 4.1 1 1 3 4 4 4 1 CENP-Q, a CENPA-CAD centromere complex subunit PhageMin_Tail PF10145.4 gi|14601261|ref|NP_147796.1| - 0.0012 18.5 7.8 0.0012 18.5 5.4 2.6 1 1 1 2 2 2 1 Phage-related minor tail protein DivIVA PF05103.8 gi|14601261|ref|NP_147796.1| - 0.0013 18.7 28.0 0.049 13.6 2.7 4.6 1 1 1 4 4 3 1 DivIVA protein Mnd1 PF03962.10 gi|14601261|ref|NP_147796.1| - 0.0014 18.3 23.8 0.055 13.1 0.8 3.3 1 1 2 3 3 3 2 Mnd1 family DUF812 PF05667.6 gi|14601261|ref|NP_147796.1| - 0.0014 17.2 26.2 0.018 13.5 16.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF812) LMP PF04778.7 gi|14601261|ref|NP_147796.1| - 0.0015 18.2 10.4 0.65 9.7 0.3 3.7 1 1 3 4 4 3 1 LMP repeated region COG5 PF10392.4 gi|14601261|ref|NP_147796.1| - 0.0015 18.4 22.5 0.013 15.4 4.8 3.9 1 1 3 4 4 4 2 Golgi transport complex subunit 5 V_ATPase_I PF01496.14 gi|14601261|ref|NP_147796.1| - 0.0016 16.4 18.7 0.1 10.4 13.0 3.0 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF2400 PF09674.5 gi|14601261|ref|NP_147796.1| - 0.0018 18.0 5.2 0.18 11.5 0.4 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF2400) Herpes_U30 PF04523.8 gi|14601261|ref|NP_147796.1| - 0.0019 15.7 14.1 0.015 12.7 9.4 2.0 1 1 1 2 2 2 1 Herpes virus tegument protein U30 ERM PF00769.14 gi|14601261|ref|NP_147796.1| - 0.0026 17.3 28.6 0.0048 16.4 7.4 2.7 1 1 2 3 3 3 2 Ezrin/radixin/moesin family DUF2968 PF11180.3 gi|14601261|ref|NP_147796.1| - 0.0039 16.6 1.2 0.0039 16.6 0.8 3.2 1 1 2 3 3 2 1 Protein of unknown function (DUF2968) DivIC PF04977.10 gi|14601261|ref|NP_147796.1| - 0.0043 16.5 33.2 0.72 9.3 0.2 5.8 2 1 3 5 5 5 0 Septum formation initiator Vac_Fusion PF02346.11 gi|14601261|ref|NP_147796.1| - 0.0052 16.1 3.6 0.53 9.7 0.1 4.1 3 2 2 5 5 3 1 Chordopoxvirus fusion protein DUF1978 PF09321.5 gi|14601261|ref|NP_147796.1| - 0.0061 16.0 6.0 0.0061 16.0 4.2 3.2 1 1 2 3 3 2 1 Domain of unknown function (DUF1978) ING PF12998.2 gi|14601261|ref|NP_147796.1| - 0.0063 16.7 7.6 0.0063 16.7 5.3 2.9 2 1 1 3 3 2 1 Inhibitor of growth proteins N-terminal histone-binding Med9 PF07544.8 gi|14601261|ref|NP_147796.1| - 0.0065 16.1 22.4 1.2 8.9 5.0 4.3 1 1 2 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 MitMem_reg PF13012.1 gi|14601261|ref|NP_147796.1| - 0.0069 16.4 12.1 0.056 13.5 1.3 4.1 1 1 3 4 4 4 1 Maintenance of mitochondrial structure and function DUF3450 PF11932.3 gi|14601261|ref|NP_147796.1| - 0.0069 15.6 26.7 0.79 8.9 7.1 3.7 1 1 2 3 3 2 0 Protein of unknown function (DUF3450) Fmp27_WPPW PF10359.4 gi|14601261|ref|NP_147796.1| - 0.0079 14.6 18.3 0.044 12.2 0.2 3.0 1 1 3 4 4 4 1 RNA pol II promoter Fmp27 protein domain ALIX_LYPXL_bnd PF13949.1 gi|14601261|ref|NP_147796.1| - 0.0083 15.1 28.4 0.18 10.7 4.3 2.4 1 1 1 2 2 2 2 ALIX V-shaped domain binding to HIV STAT_alpha PF01017.15 gi|14601261|ref|NP_147796.1| - 0.0087 15.7 22.5 0.72 9.5 6.7 3.7 1 1 2 3 3 2 0 STAT protein, all-alpha domain DUF4140 PF13600.1 gi|14601261|ref|NP_147796.1| - 0.0089 16.4 41.6 0.092 13.2 4.3 6.5 2 1 4 6 6 5 1 N-terminal domain of unknown function (DUF4140) TMF_TATA_bd PF12325.3 gi|14601261|ref|NP_147796.1| - 0.0097 15.6 13.0 0.0097 15.6 9.0 3.9 1 1 3 4 4 4 1 TATA element modulatory factor 1 TATA binding GP41 PF00517.12 gi|14601261|ref|NP_147796.1| - 0.0098 15.4 15.1 0.49 9.9 0.0 4.8 1 1 2 4 4 3 1 Retroviral envelope protein Cortex-I_coil PF09304.5 gi|14601261|ref|NP_147796.1| - 0.0098 15.9 33.5 0.4 10.7 1.2 4.4 1 1 4 5 5 5 1 Cortexillin I, coiled coil MbeD_MobD PF04899.7 gi|14601261|ref|NP_147796.1| - 0.01 15.6 0.3 0.01 15.6 0.2 4.4 2 2 2 4 4 3 0 MbeD/MobD like Syntaxin-6_N PF09177.6 gi|14601261|ref|NP_147796.1| - 0.012 16.0 28.4 2.4 8.6 0.3 5.5 1 1 4 5 5 4 0 Syntaxin 6, N-terminal HOOK PF05622.7 gi|14601261|ref|NP_147796.1| - 0.014 13.2 31.7 0.034 11.9 19.2 2.3 1 1 1 2 2 2 0 HOOK protein Cluap1 PF10234.4 gi|14601261|ref|NP_147796.1| - 0.015 14.4 20.7 0.16 11.1 2.1 3.1 1 1 2 3 3 3 0 Clusterin-associated protein-1 DUF1411 PF07199.6 gi|14601261|ref|NP_147796.1| - 0.016 14.6 0.1 0.028 13.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) FliD_C PF07195.7 gi|14601261|ref|NP_147796.1| - 0.017 14.4 17.3 0.13 11.5 3.3 3.6 1 1 2 3 3 2 0 Flagellar hook-associated protein 2 C-terminus Nsp1_C PF05064.8 gi|14601261|ref|NP_147796.1| - 0.017 14.7 32.8 0.061 12.9 1.5 5.0 1 1 3 5 5 5 0 Nsp1-like C-terminal region DUF745 PF05335.8 gi|14601261|ref|NP_147796.1| - 0.017 14.6 0.5 0.017 14.6 0.3 3.6 1 1 4 5 5 3 0 Protein of unknown function (DUF745) Taxilin PF09728.4 gi|14601261|ref|NP_147796.1| - 0.018 14.1 20.6 0.1 11.6 14.3 2.4 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Allexi_40kDa PF05549.6 gi|14601261|ref|NP_147796.1| - 0.02 14.2 17.0 0.25 10.6 3.5 3.2 1 1 3 4 4 4 0 Allexivirus 40kDa protein CCDC144C PF14915.1 gi|14601261|ref|NP_147796.1| - 0.021 13.7 25.1 0.42 9.4 15.6 2.2 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region Prefoldin_3 PF13758.1 gi|14601261|ref|NP_147796.1| - 0.021 14.5 12.2 0.042 13.6 1.5 4.5 3 1 0 5 5 3 0 Prefoldin subunit MCPsignal PF00015.16 gi|14601261|ref|NP_147796.1| - 0.029 13.9 22.6 0.097 12.1 5.3 3.4 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Sipho_Gp157 PF05565.6 gi|14601261|ref|NP_147796.1| - 0.031 13.8 11.9 2.1 7.9 0.6 3.3 1 1 2 3 3 3 0 Siphovirus Gp157 Occludin_ELL PF07303.8 gi|14601261|ref|NP_147796.1| - 0.034 14.8 17.0 8.8 7.1 1.9 5.4 1 1 5 6 6 5 0 Occludin homology domain Cep57_CLD_2 PF14197.1 gi|14601261|ref|NP_147796.1| - 0.035 14.0 45.6 0.16 11.9 1.7 5.8 3 1 3 6 6 5 0 Centrosome localisation domain of PPC89 IZUMO PF15005.1 gi|14601261|ref|NP_147796.1| - 0.038 14.0 5.8 0.35 10.9 1.0 3.0 1 1 2 3 3 3 0 Izumo sperm-egg fusion Syntaxin PF00804.20 gi|14601261|ref|NP_147796.1| - 0.039 14.1 23.6 0.3 11.2 0.7 3.7 1 1 2 3 3 3 0 Syntaxin Tup_N PF08581.5 gi|14601261|ref|NP_147796.1| - 0.042 14.0 17.3 0.16 12.1 1.7 3.7 1 1 1 3 3 3 0 Tup N-terminal DUF3552 PF12072.3 gi|14601261|ref|NP_147796.1| - 0.043 13.0 31.0 0.067 12.3 3.4 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF3552) MtrB PF05440.7 gi|14601261|ref|NP_147796.1| - 0.046 13.7 9.0 9.5 6.3 0.1 5.3 1 1 6 7 7 5 0 Tetrahydromethanopterin S-methyltransferase subunit B CALCOCO1 PF07888.6 gi|14601261|ref|NP_147796.1| - 0.05 11.9 33.3 1.9 6.6 23.4 2.0 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Trns_repr_metal PF02583.12 gi|14601261|ref|NP_147796.1| - 0.063 13.4 10.5 0.082 13.1 0.2 3.0 1 1 0 2 2 2 0 Metal-sensitive transcriptional repressor Gp58 PF07902.6 gi|14601261|ref|NP_147796.1| - 0.066 11.4 14.2 0.47 8.6 4.1 2.7 1 1 2 3 3 3 0 gp58-like protein DUF641 PF04859.7 gi|14601261|ref|NP_147796.1| - 0.092 12.4 20.6 0.21 11.3 2.7 4.1 1 1 2 4 4 3 0 Plant protein of unknown function (DUF641) DASH_Dam1 PF08653.5 gi|14601261|ref|NP_147796.1| - 0.1 12.3 12.1 6.2 6.6 0.3 5.3 2 2 4 6 6 4 0 DASH complex subunit Dam1 Prominin PF05478.6 gi|14601261|ref|NP_147796.1| - 0.11 10.0 19.5 1.4 6.3 0.2 2.9 1 1 1 2 2 2 0 Prominin Phage_GPO PF05929.6 gi|14601261|ref|NP_147796.1| - 0.11 11.6 26.6 0.035 13.3 1.1 3.5 1 1 3 4 4 3 0 Phage capsid scaffolding protein (GPO) serine peptidase TMPIT PF07851.8 gi|14601261|ref|NP_147796.1| - 0.13 11.2 12.7 0.15 11.1 2.0 2.7 1 1 3 4 4 4 0 TMPIT-like protein FimP PF09766.4 gi|14601261|ref|NP_147796.1| - 0.13 11.2 12.0 0.55 9.2 2.8 3.1 1 1 2 3 3 3 0 Fms-interacting protein DUF2408 PF10303.4 gi|14601261|ref|NP_147796.1| - 0.14 12.3 16.2 3.9 7.5 0.4 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2408) Spc24 PF08286.6 gi|14601261|ref|NP_147796.1| - 0.14 11.8 29.7 7.4 6.2 0.5 5.2 1 1 2 3 3 2 0 Spc24 subunit of Ndc80 Phage_GP20 PF06810.6 gi|14601261|ref|NP_147796.1| - 0.14 11.6 25.0 0.29 10.5 2.5 4.3 1 1 3 4 4 4 0 Phage minor structural protein GP20 Hemagglutinin PF00509.13 gi|14601261|ref|NP_147796.1| - 0.15 10.2 7.4 2.2 6.3 0.0 3.4 1 1 3 4 4 4 0 Haemagglutinin DUF4164 PF13747.1 gi|14601261|ref|NP_147796.1| - 0.15 12.2 42.4 0.039 14.0 3.6 4.3 2 2 2 4 4 4 0 Domain of unknown function (DUF4164) Sec2p PF06428.6 gi|14601261|ref|NP_147796.1| - 0.17 11.7 32.0 0.62 9.9 0.4 4.4 1 1 4 5 5 5 0 GDP/GTP exchange factor Sec2p DUF3829 PF12889.2 gi|14601261|ref|NP_147796.1| - 0.17 11.0 10.6 1.1 8.3 0.9 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF3829) DUF16 PF01519.11 gi|14601261|ref|NP_147796.1| - 0.2 11.8 21.9 0.59 10.3 0.3 4.7 1 1 1 2 2 1 0 Protein of unknown function DUF16 FliD_N PF02465.13 gi|14601261|ref|NP_147796.1| - 0.2 12.0 23.3 18 5.7 2.3 4.9 1 1 4 5 5 4 0 Flagellar hook-associated protein 2 N-terminus DUF4618 PF15397.1 gi|14601261|ref|NP_147796.1| - 0.21 10.8 21.5 0.74 9.0 7.5 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF724 PF05266.9 gi|14601261|ref|NP_147796.1| - 0.21 11.1 18.7 0.97 9.0 4.8 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF724) mRNA_triPase PF02940.10 gi|14601261|ref|NP_147796.1| - 0.21 11.2 2.1 0.25 11.0 0.6 1.6 2 0 0 2 2 1 0 mRNA capping enzyme, beta chain Rho_Binding PF08912.6 gi|14601261|ref|NP_147796.1| - 0.24 11.7 19.5 0.16 12.3 0.7 4.5 2 2 2 4 4 4 0 Rho Binding Erp_C PF06780.6 gi|14601261|ref|NP_147796.1| - 0.26 11.1 12.4 1.2 9.0 1.7 2.7 1 1 2 3 3 3 0 Erp protein C-terminus DUF1202 PF06717.6 gi|14601261|ref|NP_147796.1| - 0.26 10.5 3.3 24 4.0 0.0 3.5 1 1 3 4 4 4 0 Protein of unknown function (DUF1202) Cob_adeno_trans PF01923.13 gi|14601261|ref|NP_147796.1| - 0.26 11.0 19.5 0.46 10.2 4.2 3.6 1 1 2 3 3 3 0 Cobalamin adenosyltransferase LXG PF04740.7 gi|14601261|ref|NP_147796.1| - 0.29 10.8 19.8 0.23 11.2 2.4 2.9 1 1 3 4 4 4 0 LXG domain of WXG superfamily DUF2353 PF09789.4 gi|14601261|ref|NP_147796.1| - 0.3 10.2 19.2 1.6 7.9 13.3 1.9 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) MT PF12777.2 gi|14601261|ref|NP_147796.1| - 0.32 9.6 12.8 0.07 11.8 3.6 2.4 1 1 1 2 2 2 0 Microtubule-binding stalk of dynein motor YscO PF07321.7 gi|14601261|ref|NP_147796.1| - 0.37 10.5 29.8 2 8.2 0.0 3.4 1 1 2 3 3 3 0 Type III secretion protein YscO Hrs_helical PF12210.3 gi|14601261|ref|NP_147796.1| - 0.38 11.0 16.7 3.9 7.8 0.2 4.0 1 1 2 3 3 3 0 Hepatocyte growth factor-regulated tyrosine kinase substrate WXG100 PF06013.7 gi|14601261|ref|NP_147796.1| - 0.39 10.7 27.2 1.8 8.6 0.5 4.9 1 1 4 5 5 5 0 Proteins of 100 residues with WXG zf-C4H2 PF10146.4 gi|14601261|ref|NP_147796.1| - 0.41 10.6 12.3 1.2 9.1 1.3 2.3 1 1 1 2 2 2 0 Zinc finger-containing protein Vip3A_N PF12495.3 gi|14601261|ref|NP_147796.1| - 0.42 10.2 2.8 10 5.7 0.4 2.4 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal GOLGA2L5 PF15070.1 gi|14601261|ref|NP_147796.1| - 0.44 8.9 30.8 0.25 9.7 2.3 2.1 1 1 1 2 2 2 0 Putative golgin subfamily A member 2-like protein 5 CCDC155 PF14662.1 gi|14601261|ref|NP_147796.1| - 0.45 10.0 36.3 2.1 7.9 5.3 2.4 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 IL6 PF00489.12 gi|14601261|ref|NP_147796.1| - 0.45 10.0 9.5 12 5.4 0.1 3.4 1 1 1 2 2 2 0 Interleukin-6/G-CSF/MGF family GrpE PF01025.14 gi|14601261|ref|NP_147796.1| - 0.45 10.0 25.0 1.1 8.8 0.9 4.4 1 1 3 4 4 4 0 GrpE TMCO5 PF14992.1 gi|14601261|ref|NP_147796.1| - 0.46 9.5 25.0 0.71 8.9 1.4 2.7 1 1 0 2 2 2 0 TMCO5 family Vps51 PF08700.6 gi|14601261|ref|NP_147796.1| - 0.48 10.3 17.0 3.8 7.3 0.3 5.4 2 1 4 6 6 5 0 Vps51/Vps67 Fez1 PF06818.10 gi|14601261|ref|NP_147796.1| - 0.51 10.3 30.4 0.65 9.9 14.3 2.2 1 1 1 2 2 2 0 Fez1 Muted PF14942.1 gi|14601261|ref|NP_147796.1| - 0.52 10.1 22.5 8.1 6.3 5.9 3.5 1 1 3 4 4 4 0 Organelle biogenesis, Muted-like protein KxDL PF10241.4 gi|14601261|ref|NP_147796.1| - 0.53 10.2 12.0 0.54 10.1 3.3 3.3 1 1 3 4 4 3 0 Uncharacterized conserved protein Hema_stalk PF08720.5 gi|14601261|ref|NP_147796.1| - 0.56 9.7 2.9 15 5.0 0.0 3.2 1 1 0 2 2 2 0 Influenza C hemagglutinin stalk ISG65-75 PF11727.3 gi|14601261|ref|NP_147796.1| - 0.56 9.2 12.5 1.9 7.4 0.9 2.6 1 1 2 3 3 3 0 Invariant surface glycoprotein DUF948 PF06103.6 gi|14601261|ref|NP_147796.1| - 0.57 10.0 31.0 0.21 11.4 2.0 5.4 2 1 3 6 6 4 0 Bacterial protein of unknown function (DUF948) LMBR1 PF04791.11 gi|14601261|ref|NP_147796.1| - 0.69 8.4 11.9 0.58 8.6 2.4 2.2 1 1 1 2 2 2 0 LMBR1-like membrane protein HCR PF07111.7 gi|14601261|ref|NP_147796.1| - 0.7 7.8 40.3 0.77 7.6 6.8 2.2 1 1 1 2 2 2 0 Alpha helical coiled-coil rod protein (HCR) ArsR PF09824.4 gi|14601261|ref|NP_147796.1| - 0.9 8.8 3.7 24 4.1 0.2 3.1 1 1 2 3 3 3 0 ArsR transcriptional regulator FlxA PF14282.1 gi|14601261|ref|NP_147796.1| - 0.97 9.4 36.8 5.7 6.9 5.2 4.3 1 1 4 5 5 5 0 FlxA-like protein Vps52 PF04129.7 gi|14601261|ref|NP_147796.1| - 1.1 7.6 14.4 0.48 8.8 1.2 2.8 1 1 2 3 3 3 0 Vps52 / Sac2 family THOC7 PF05615.8 gi|14601261|ref|NP_147796.1| - 1.1 9.5 25.2 13 6.0 9.4 3.6 1 1 1 2 2 1 0 Tho complex subunit 7 Med4 PF10018.4 gi|14601261|ref|NP_147796.1| - 1.2 8.5 30.3 2.6 7.3 0.1 4.2 1 1 3 4 4 4 0 Vitamin-D-receptor interacting Mediator subunit 4 Sec8_exocyst PF04048.9 gi|14601261|ref|NP_147796.1| - 1.3 8.6 16.6 0.98 9.0 0.5 3.2 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain UPF0184 PF03670.8 gi|14601261|ref|NP_147796.1| - 1.3 9.2 24.8 0.47 10.6 0.6 5.9 1 1 5 6 6 6 0 Uncharacterised protein family (UPF0184) Hormone_1 PF00103.15 gi|14601261|ref|NP_147796.1| - 1.4 8.1 7.6 8.3 5.6 0.6 3.2 1 1 3 4 4 4 0 Somatotropin hormone family YPEB PF14620.1 gi|14601261|ref|NP_147796.1| - 1.7 7.5 15.9 7.8 5.3 0.3 2.9 1 1 2 3 3 3 0 YpeB sporulation BRE1 PF08647.6 gi|14601261|ref|NP_147796.1| - 2 8.4 18.6 0.45 10.5 0.8 3.2 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase Ax_dynein_light PF10211.4 gi|14601261|ref|NP_147796.1| - 2 8.2 22.5 12 5.7 0.3 4.7 1 1 4 5 5 5 0 Axonemal dynein light chain Adeno_PIX PF03955.9 gi|14601261|ref|NP_147796.1| - 2.2 8.8 24.8 1.7 9.1 0.2 5.3 1 1 5 6 6 4 0 Adenovirus hexon-associated protein (IX) Streptin-Immun PF11083.3 gi|14601261|ref|NP_147796.1| - 2.4 8.2 11.7 8.5 6.4 0.1 4.8 2 1 2 5 5 4 0 Lantibiotic streptin immunity protein bZIP_1 PF00170.16 gi|14601261|ref|NP_147796.1| - 2.5 8.1 20.7 22 5.1 0.1 6.0 1 1 7 9 9 8 0 bZIP transcription factor DUF607 PF04678.8 gi|14601261|ref|NP_147796.1| - 2.8 7.8 16.5 8.4 6.2 2.6 3.6 1 1 1 2 2 2 0 Protein of unknown function, DUF607 YvrJ PF12841.2 gi|14601261|ref|NP_147796.1| - 2.9 7.2 9.8 14 5.0 0.0 4.7 5 0 0 5 5 3 0 YvrJ protein family FUSC PF04632.7 gi|14601261|ref|NP_147796.1| - 2.9 6.2 41.8 3.4 5.9 11.5 2.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family Vps53_N PF04100.7 gi|14601261|ref|NP_147796.1| - 2.9 6.5 21.6 0.28 9.9 2.2 3.4 1 1 3 4 4 4 0 Vps53-like, N-terminal TACC PF05010.9 gi|14601261|ref|NP_147796.1| - 2.9 7.5 19.4 21 4.8 13.5 2.1 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) Jnk-SapK_ap_N PF09744.4 gi|14601261|ref|NP_147796.1| - 2.9 7.8 19.1 4.1 7.3 0.3 4.0 1 1 3 4 4 3 0 JNK_SAPK-associated protein-1 DUF4298 PF14131.1 gi|14601261|ref|NP_147796.1| - 3 7.7 12.4 12 5.9 0.5 4.8 3 1 3 6 6 5 0 Domain of unknown function (DUF4298) Corona_S2 PF01601.11 gi|14601261|ref|NP_147796.1| - 3.2 5.7 10.3 2.9 5.8 2.7 2.6 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein CorA PF01544.13 gi|14601261|ref|NP_147796.1| - 3.4 6.6 25.7 0.99 8.3 3.1 3.0 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DegS PF05384.6 gi|14601261|ref|NP_147796.1| - 3.5 6.8 21.6 0.032 13.4 0.9 3.5 1 1 2 4 4 4 0 Sensor protein DegS Noelin-1 PF12308.3 gi|14601261|ref|NP_147796.1| - 3.6 7.4 16.3 0.39 10.5 0.4 3.9 1 1 3 5 5 5 0 Neurogenesis glycoprotein Sec3_C PF09763.4 gi|14601261|ref|NP_147796.1| - 3.6 5.5 20.5 0.89 7.6 0.4 3.0 1 1 1 3 3 3 0 Exocyst complex component Sec3 FemAB PF02388.11 gi|14601261|ref|NP_147796.1| - 3.8 6.0 13.3 2.9 6.4 2.0 3.1 1 1 1 2 2 2 0 FemAB family DUF1395 PF07160.7 gi|14601261|ref|NP_147796.1| - 4 6.8 14.4 8.7 5.7 3.3 3.3 1 1 4 5 5 4 0 Protein of unknown function (DUF1395) DMPK_coil PF08826.5 gi|14601261|ref|NP_147796.1| - 4 7.4 29.9 0.39 10.6 4.1 4.7 3 1 1 5 5 4 0 DMPK coiled coil domain like HAUS-augmin3 PF14932.1 gi|14601261|ref|NP_147796.1| - 4 6.5 29.9 1.5 7.9 3.7 2.6 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 3 Med10 PF09748.4 gi|14601261|ref|NP_147796.1| - 4.2 7.2 12.3 1.4e+02 2.2 0.0 3.5 1 1 1 2 2 1 0 Transcription factor subunit Med10 of Mediator complex DASH_Spc34 PF08657.5 gi|14601261|ref|NP_147796.1| - 4.2 6.9 24.7 6.9 6.2 4.8 4.1 1 1 3 5 5 4 0 DASH complex subunit Spc34 LPP PF04728.8 gi|14601261|ref|NP_147796.1| - 4.2 7.2 19.8 9.3 6.1 1.0 5.5 1 1 5 6 6 6 0 Lipoprotein leucine-zipper Sigma70_ner PF04546.8 gi|14601261|ref|NP_147796.1| - 4.5 6.8 16.1 0.31 10.6 6.5 2.1 1 1 1 2 2 1 0 Sigma-70, non-essential region Cytochrom_B562 PF07361.6 gi|14601261|ref|NP_147796.1| - 4.6 7.7 13.9 4.9 7.6 1.7 3.0 1 1 2 3 3 3 0 Cytochrome b562 HALZ PF02183.13 gi|14601261|ref|NP_147796.1| - 5.1 6.9 21.8 2.8 7.7 0.3 5.5 5 2 1 6 6 4 0 Homeobox associated leucine zipper DUF2203 PF09969.4 gi|14601261|ref|NP_147796.1| - 6 7.1 15.6 56 3.9 0.1 3.5 1 1 1 2 2 1 0 Uncharacterized conserved protein (DUF2203) BBP1_C PF15272.1 gi|14601261|ref|NP_147796.1| - 6.1 6.3 19.8 0.73 9.3 6.0 2.6 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF2746 PF10874.3 gi|14601261|ref|NP_147796.1| - 6.2 7.0 7.7 1.6e+02 2.5 2.6 3.8 1 1 2 3 3 2 0 Protein of unknown function (DUF2746) Microtub_assoc PF07989.6 gi|14601261|ref|NP_147796.1| - 6.2 6.7 18.3 0.72 9.7 0.7 4.3 1 1 3 5 5 4 0 Microtubule associated HAP1_N PF04849.8 gi|14601261|ref|NP_147796.1| - 6.6 5.5 31.6 12 4.7 21.9 1.4 1 1 0 1 1 1 0 HAP1 N-terminal conserved region HCMV_UL139 PF12507.3 gi|14601261|ref|NP_147796.1| - 6.8 6.8 9.2 1.6e+03 -0.8 6.4 3.1 1 1 0 1 1 0 0 Human Cytomegalovirus UL139 protein Hemerythrin PF01814.18 gi|14601261|ref|NP_147796.1| - 6.9 6.8 19.7 25 5.0 4.8 3.9 1 1 2 3 3 2 0 Hemerythrin HHE cation binding domain AATF-Che1 PF13339.1 gi|14601261|ref|NP_147796.1| - 7 6.8 24.6 10 6.3 6.2 3.8 1 1 3 4 4 4 0 Apoptosis antagonizing transcription factor Sec34 PF04136.10 gi|14601261|ref|NP_147796.1| - 7.1 6.3 14.2 31 4.2 5.1 3.1 1 1 1 2 2 2 0 Sec34-like family DUF2802 PF10975.3 gi|14601261|ref|NP_147796.1| - 7.2 6.4 23.7 10 5.9 0.4 6.3 2 2 4 6 6 4 0 Protein of unknown function (DUF2802) HsbA PF12296.3 gi|14601261|ref|NP_147796.1| - 7.6 6.4 14.2 1.8 8.4 3.5 3.6 1 1 3 4 4 4 0 Hydrophobic surface binding protein A Nup88 PF10168.4 gi|14601261|ref|NP_147796.1| - 7.6 4.2 13.5 0.36 8.6 4.6 1.7 1 1 1 2 2 2 0 Nuclear pore component KaiC PF06745.8 gi|14601261|ref|NP_147796.1| - 8 5.5 10.3 1.5 7.9 1.1 2.9 1 1 2 3 3 3 0 KaiC DUF4559 PF15112.1 gi|14601261|ref|NP_147796.1| - 8.2 5.4 17.9 0.49 9.5 0.4 2.7 1 1 1 2 2 1 0 Domain of unknown function (DUF4559) GBP_C PF02841.9 gi|14601261|ref|NP_147796.1| - 9.1 5.3 20.7 9.5 5.3 7.2 2.3 1 1 1 2 2 2 0 Guanylate-binding protein, C-terminal domain DUF373 PF04123.8 gi|14601264|ref|NP_147799.1| - 1.1 8.1 8.7 2.4 7.1 6.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF202 PF02656.10 gi|14601264|ref|NP_147799.1| - 6 7.1 18.0 35 4.7 4.3 3.6 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DUF1626 PF07788.6 gi|14601265|ref|NP_147800.1| - 1.7e-27 94.9 1.0 5e-27 93.4 0.7 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) ERM PF00769.14 gi|14601265|ref|NP_147800.1| - 4.2e-07 29.7 21.3 4.2e-07 29.7 14.7 2.1 1 1 2 3 3 3 2 Ezrin/radixin/moesin family IncA PF04156.9 gi|14601265|ref|NP_147800.1| - 4.4e-07 29.6 59.0 0.00095 18.8 19.3 2.6 1 1 1 2 2 2 2 IncA protein Vac_Fusion PF02346.11 gi|14601265|ref|NP_147800.1| - 2.9e-05 23.3 45.3 0.013 14.8 1.7 5.4 3 1 2 6 6 5 5 Chordopoxvirus fusion protein BLOC1_2 PF10046.4 gi|14601265|ref|NP_147800.1| - 0.00017 21.6 18.5 0.035 14.2 2.8 3.6 1 1 3 4 4 4 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin_1 PF12718.2 gi|14601265|ref|NP_147800.1| - 0.0008 19.2 39.0 0.06 13.1 13.5 3.2 1 1 2 3 3 3 3 Tropomyosin like Tropomyosin PF00261.15 gi|14601265|ref|NP_147800.1| - 0.001 18.1 45.0 0.021 13.9 30.6 2.2 1 1 1 2 2 2 1 Tropomyosin EzrA PF06160.7 gi|14601265|ref|NP_147800.1| - 0.0026 16.0 31.9 0.004 15.4 14.5 2.2 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA ADIP PF11559.3 gi|14601265|ref|NP_147800.1| - 0.006 16.4 42.4 0.059 13.2 8.7 3.3 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding DUF342 PF03961.8 gi|14601265|ref|NP_147800.1| - 0.0065 14.9 27.4 0.038 12.4 7.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF342) GAS PF13851.1 gi|14601265|ref|NP_147800.1| - 0.012 14.8 45.2 0.2 10.8 5.7 3.1 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.7 gi|14601265|ref|NP_147800.1| - 0.015 15.1 0.4 1.8 8.3 0.3 2.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ATG16 PF08614.6 gi|14601265|ref|NP_147800.1| - 0.04 13.7 39.7 1.1 9.0 17.7 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) RmuC PF02646.11 gi|14601265|ref|NP_147800.1| - 0.05 12.4 22.2 0.78 8.5 4.3 3.1 1 1 2 3 3 3 0 RmuC family TMF_DNA_bd PF12329.3 gi|14601265|ref|NP_147800.1| - 0.11 12.3 35.0 0.38 10.5 5.0 3.5 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding Jnk-SapK_ap_N PF09744.4 gi|14601265|ref|NP_147800.1| - 0.16 11.9 49.8 0.68 9.9 9.4 3.8 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 DUF1465 PF07323.7 gi|14601265|ref|NP_147800.1| - 0.28 10.7 33.3 3 7.3 5.3 4.7 1 1 3 4 4 4 0 Protein of unknown function (DUF1465) DASH_Dam1 PF08653.5 gi|14601265|ref|NP_147800.1| - 0.42 10.4 15.7 13 5.6 0.2 5.6 1 1 6 7 7 7 0 DASH complex subunit Dam1 Nup54 PF13874.1 gi|14601265|ref|NP_147800.1| - 0.47 10.1 45.7 0.1 12.2 15.2 2.8 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 FadA PF09403.5 gi|14601265|ref|NP_147800.1| - 0.57 10.2 40.1 1.8 8.5 7.2 4.3 1 1 2 3 3 3 0 Adhesion protein FadA DUF3552 PF12072.3 gi|14601265|ref|NP_147800.1| - 0.61 9.2 51.7 1.9 7.6 13.0 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF3552) DUF585 PF04522.7 gi|14601265|ref|NP_147800.1| - 0.64 9.3 4.5 4.7 6.5 0.9 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF585) DUF724 PF05266.9 gi|14601265|ref|NP_147800.1| - 0.67 9.5 33.4 2.7 7.5 10.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) V_ATPase_I PF01496.14 gi|14601265|ref|NP_147800.1| - 0.96 7.2 34.9 2.9 5.6 6.8 2.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|14601265|ref|NP_147800.1| - 1.5 7.3 28.8 3.5 6.2 14.0 2.6 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|14601265|ref|NP_147800.1| - 2.1 8.7 32.7 2.6 8.4 3.9 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF869 PF05911.6 gi|14601265|ref|NP_147800.1| - 2.6 6.1 30.1 0.75 7.9 9.7 2.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Nsp1_C PF05064.8 gi|14601265|ref|NP_147800.1| - 2.6 7.7 35.0 1.2 8.7 3.1 4.0 2 1 3 5 5 4 0 Nsp1-like C-terminal region Laminin_II PF06009.7 gi|14601265|ref|NP_147800.1| - 3.3 7.4 15.2 24 4.6 5.8 3.7 1 1 1 2 2 2 0 Laminin Domain II ORF6C PF10552.4 gi|14601265|ref|NP_147800.1| - 4.1 7.1 17.9 10 5.8 0.8 4.8 1 1 4 5 5 5 0 ORF6C domain Fib_alpha PF08702.5 gi|14601265|ref|NP_147800.1| - 4.4 7.4 20.9 10 6.1 8.7 2.8 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF2400 PF09674.5 gi|14601265|ref|NP_147800.1| - 4.6 6.8 18.8 3.3 7.3 3.7 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) AAA_27 PF13514.1 gi|14601265|ref|NP_147800.1| - 4.8 4.7 36.1 6.3 4.3 25.1 1.1 1 0 0 1 1 1 0 AAA domain XhlA PF10779.4 gi|14601265|ref|NP_147800.1| - 5.5 6.9 26.8 2.5 8.0 1.9 4.5 1 1 3 4 4 4 0 Haemolysin XhlA Prefoldin_2 PF01920.15 gi|14601265|ref|NP_147800.1| - 7.5 6.3 43.2 2.2 8.0 1.8 5.1 1 1 5 6 6 6 0 Prefoldin subunit PALP PF00291.20 gi|118431373|ref|NP_147802.2| - 4.4e-58 196.9 0.2 3.8e-29 101.8 0.2 2.0 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme Cys_Met_Meta_PP PF01053.15 gi|14601268|ref|NP_147803.1| - 9.2e-156 517.9 0.0 1e-155 517.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|14601268|ref|NP_147803.1| - 5.3e-09 35.4 0.0 7.5e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|14601268|ref|NP_147803.1| - 6e-09 35.4 0.1 2.7e-08 33.2 0.0 1.9 1 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|14601268|ref|NP_147803.1| - 3.8e-08 32.4 0.0 2.5e-07 29.7 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|14601268|ref|NP_147803.1| - 7.7e-06 25.2 0.0 1.2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|14601268|ref|NP_147803.1| - 0.048 12.3 0.0 0.092 11.4 0.0 1.4 2 0 0 2 2 2 0 Glycine cleavage system P-protein DUF2276 PF10040.4 gi|118431374|ref|NP_147804.2| - 3e-19 69.4 0.4 4.3e-19 68.9 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Cas_Csa4 PF09703.5 gi|14601271|ref|NP_147806.1| - 2.1e-136 454.6 0.0 2.4e-136 454.4 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) HD PF01966.17 gi|14601272|ref|NP_147807.1| - 0.066 13.2 0.1 0.28 11.1 0.0 2.2 2 1 0 2 2 2 0 HD domain DEAD PF00270.24 gi|14601273|ref|NP_147808.1| - 2e-15 56.6 0.0 6.7e-15 54.9 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|14601273|ref|NP_147808.1| - 0.00011 21.9 0.0 0.00021 21.0 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|14601273|ref|NP_147808.1| - 0.0013 18.6 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cas_Cas5d PF09704.5 gi|118431375|ref|NP_147810.2| - 8.4e-14 51.7 0.1 1.1e-13 51.3 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|14601276|ref|NP_147811.1| - 3.5e-70 235.9 0.0 4e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 CG-1 PF03859.11 gi|118431376|ref|NP_147812.2| - 0.047 13.2 0.0 0.057 12.9 0.0 1.1 1 0 0 1 1 1 0 CG-1 domain TrmB PF01978.14 gi|118431377|ref|NP_147813.2| - 6e-05 22.6 0.3 0.00012 21.7 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|118431377|ref|NP_147813.2| - 8.1e-05 22.2 0.7 0.00016 21.2 0.5 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|118431377|ref|NP_147813.2| - 0.00014 21.4 0.2 0.00023 20.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|118431377|ref|NP_147813.2| - 0.00038 20.7 0.6 0.00068 19.9 0.4 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|118431377|ref|NP_147813.2| - 0.0014 18.7 0.2 0.0025 17.9 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HxlR PF01638.12 gi|118431377|ref|NP_147813.2| - 0.0028 17.2 0.2 0.0064 16.1 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.1 gi|118431377|ref|NP_147813.2| - 0.004 16.9 0.1 0.0074 16.0 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|118431377|ref|NP_147813.2| - 0.02 14.4 0.6 0.046 13.3 0.4 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain SelB-wing_2 PF09106.6 gi|118431377|ref|NP_147813.2| - 0.029 14.2 0.4 0.076 12.9 0.3 1.7 1 0 0 1 1 1 0 Elongation factor SelB, winged helix GntR PF00392.16 gi|118431377|ref|NP_147813.2| - 0.22 10.9 2.0 0.35 10.3 0.5 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Cas_Cas4 PF01930.12 gi|118431378|ref|NP_147814.2| - 1.8e-11 44.2 0.0 3.3e-11 43.3 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|118431378|ref|NP_147814.2| - 1e-09 38.2 0.1 9e-08 31.7 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|118431378|ref|NP_147814.2| - 0.00015 21.0 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) CRISPR_Cas2 PF09827.4 gi|118431379|ref|YP_874882.1| - 4.8e-14 52.2 0.1 5.7e-14 52.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 CutC PF03932.9 gi|118431379|ref|YP_874882.1| - 0.022 14.0 0.0 0.023 13.9 0.0 1.0 1 0 0 1 1 1 0 CutC family DUF4385 PF14328.1 gi|118431379|ref|YP_874882.1| - 0.049 13.5 0.1 0.059 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4385) PaaX_C PF08223.6 gi|118431379|ref|YP_874882.1| - 0.12 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain Cas_Cas1 PF01867.11 gi|118431380|ref|NP_147815.2| - 6.3e-64 215.7 0.0 7.2e-64 215.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF911 PF06023.7 gi|118431381|ref|NP_147816.2| - 1e-85 287.4 0.0 2.8e-59 200.7 0.0 2.0 1 1 1 2 2 2 2 Archaeal protein of unknown function (DUF911) Peptidase_C47 PF05543.8 gi|118431382|ref|YP_874883.1| - 0.04 13.3 0.0 0.043 13.2 0.0 1.1 1 0 0 1 1 1 0 Staphopain peptidase C47 Abhydrolase_5 PF12695.2 gi|118431383|ref|NP_147820.2| - 1.1e-12 47.9 0.5 2.3e-12 46.8 0.3 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|118431383|ref|NP_147820.2| - 9.2e-10 38.7 12.6 4.6e-09 36.5 8.7 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|118431383|ref|NP_147820.2| - 1.4e-06 28.0 0.1 3e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|118431383|ref|NP_147820.2| - 0.0013 18.3 0.1 0.0018 17.8 0.1 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|118431383|ref|NP_147820.2| - 0.0032 16.0 0.0 0.0043 15.5 0.0 1.2 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) DUF2048 PF09752.4 gi|118431383|ref|NP_147820.2| - 0.062 12.1 3.1 0.1 11.4 2.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Peptidase_S15 PF02129.13 gi|118431383|ref|NP_147820.2| - 0.15 11.4 0.4 0.32 10.3 0.1 1.5 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.16 gi|118431383|ref|NP_147820.2| - 0.17 11.0 0.0 0.36 10.0 0.0 1.5 1 0 0 1 1 1 0 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|118431383|ref|NP_147820.2| - 0.31 10.7 1.1 0.52 9.9 0.8 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal ADH_N PF08240.7 gi|118431384|ref|NP_147821.2| - 4.1e-26 90.8 0.0 6.7e-26 90.1 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|118431384|ref|NP_147821.2| - 2.5e-12 46.4 0.0 3.8e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|118431384|ref|NP_147821.2| - 1.4e-07 32.4 0.0 2.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase IlvN PF07991.7 gi|118431384|ref|NP_147821.2| - 0.055 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AAT PF03417.11 gi|118431384|ref|NP_147821.2| - 0.1 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase F420_oxidored PF03807.12 gi|118431384|ref|NP_147821.2| - 0.12 12.8 0.0 0.32 11.4 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ADH_N_assoc PF13823.1 gi|118431384|ref|NP_147821.2| - 0.12 12.0 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-associated ABC_tran PF00005.22 gi|14601291|ref|NP_147826.1| - 4.5e-32 111.2 0.0 8e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14601291|ref|NP_147826.1| - 2.2e-13 50.8 0.0 1.8e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|14601291|ref|NP_147826.1| - 4.3e-06 26.1 0.0 0.0033 16.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|14601291|ref|NP_147826.1| - 1.9e-05 23.7 0.4 0.024 13.5 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_15 PF13175.1 gi|14601291|ref|NP_147826.1| - 0.00017 20.7 0.0 0.042 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|14601291|ref|NP_147826.1| - 0.00062 18.9 0.1 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|14601291|ref|NP_147826.1| - 0.00076 18.9 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|14601291|ref|NP_147826.1| - 0.0017 18.1 4.5 0.0048 16.6 0.2 3.1 2 1 1 3 3 3 1 Part of AAA domain AAA_16 PF13191.1 gi|14601291|ref|NP_147826.1| - 0.0023 17.9 3.0 0.0046 16.9 0.7 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|14601291|ref|NP_147826.1| - 0.0029 18.3 0.7 0.0087 16.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|14601291|ref|NP_147826.1| - 0.004 16.5 0.6 0.017 14.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|14601291|ref|NP_147826.1| - 0.0049 16.3 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|14601291|ref|NP_147826.1| - 0.0083 15.6 0.4 0.035 13.5 0.0 2.0 2 1 1 3 3 3 1 AAA-like domain AAA_22 PF13401.1 gi|14601291|ref|NP_147826.1| - 0.0086 16.2 0.5 0.025 14.6 0.1 2.2 1 1 1 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|14601291|ref|NP_147826.1| - 0.012 15.3 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|14601291|ref|NP_147826.1| - 0.013 15.8 2.1 0.13 12.5 0.1 2.8 2 1 1 3 3 3 0 AAA domain MobB PF03205.9 gi|14601291|ref|NP_147826.1| - 0.014 15.0 0.2 0.061 13.0 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|14601291|ref|NP_147826.1| - 0.018 14.6 2.2 0.047 13.2 0.0 2.5 3 0 0 3 3 2 0 AAA domain NACHT PF05729.7 gi|14601291|ref|NP_147826.1| - 0.024 14.2 0.2 0.075 12.6 0.1 1.9 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|14601291|ref|NP_147826.1| - 0.025 14.9 0.0 0.047 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain HHH_5 PF14520.1 gi|14601291|ref|NP_147826.1| - 0.028 14.5 0.2 2.3 8.4 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain AAA_28 PF13521.1 gi|14601291|ref|NP_147826.1| - 0.031 14.2 0.3 0.14 12.1 0.0 2.2 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|14601291|ref|NP_147826.1| - 0.035 13.8 0.0 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|14601291|ref|NP_147826.1| - 0.052 13.4 0.5 0.21 11.4 0.0 2.2 3 0 0 3 3 2 0 AAA domain RecA PF00154.16 gi|14601291|ref|NP_147826.1| - 0.075 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_24 PF13479.1 gi|14601291|ref|NP_147826.1| - 0.08 12.5 0.2 0.68 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|14601291|ref|NP_147826.1| - 0.089 11.9 0.0 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|14601291|ref|NP_147826.1| - 0.097 12.5 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|14601291|ref|NP_147826.1| - 0.1 11.4 0.2 0.46 9.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.10 gi|14601291|ref|NP_147826.1| - 0.18 10.4 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_tran PF00005.22 gi|118431385|ref|NP_147827.2| - 5e-25 88.3 0.0 7.2e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431385|ref|NP_147827.2| - 7.3e-16 58.9 0.0 1.9e-08 34.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431385|ref|NP_147827.2| - 2.7e-05 23.5 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|118431385|ref|NP_147827.2| - 0.0022 17.7 0.7 0.0071 16.0 0.1 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|118431385|ref|NP_147827.2| - 0.0024 17.8 0.0 0.0037 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|118431385|ref|NP_147827.2| - 0.0044 16.4 0.1 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|118431385|ref|NP_147827.2| - 0.011 16.0 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|118431385|ref|NP_147827.2| - 0.015 14.7 0.1 0.036 13.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain MobB PF03205.9 gi|118431385|ref|NP_147827.2| - 0.017 14.7 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|118431385|ref|NP_147827.2| - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|118431385|ref|NP_147827.2| - 0.022 14.1 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|118431385|ref|NP_147827.2| - 0.039 12.7 0.1 0.063 12.0 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|118431385|ref|NP_147827.2| - 0.041 13.7 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|118431385|ref|NP_147827.2| - 0.055 13.6 0.0 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|118431385|ref|NP_147827.2| - 0.059 12.8 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|118431385|ref|NP_147827.2| - 0.061 12.3 0.0 0.76 8.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|118431385|ref|NP_147827.2| - 0.11 11.9 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase T2SE PF00437.15 gi|118431385|ref|NP_147827.2| - 0.13 11.1 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|118431385|ref|NP_147827.2| - 0.16 11.5 0.1 0.44 10.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|118431385|ref|NP_147827.2| - 0.17 11.2 0.0 0.37 10.1 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain ABC2_membrane_3 PF12698.2 gi|14601293|ref|NP_147828.1| - 1.3e-16 60.6 7.5 1.5e-16 60.3 5.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|14601293|ref|NP_147828.1| - 2.4e-07 29.9 17.6 4.1e-07 29.1 12.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|14601293|ref|NP_147828.1| - 0.0029 16.7 13.0 0.0059 15.8 9.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein Hemerythrin PF01814.18 gi|118431386|ref|NP_147829.2| - 7e-21 74.7 7.3 7e-21 74.7 5.1 1.5 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain SR-25 PF10500.4 gi|118431386|ref|NP_147829.2| - 3.4 7.0 4.5 15 4.9 0.3 2.1 1 1 1 2 2 2 0 Nuclear RNA-splicing-associated protein Lactamase_B PF00753.22 gi|14601295|ref|NP_147830.1| - 4.1e-24 85.2 5.2 5.7e-24 84.8 3.6 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|14601295|ref|NP_147830.1| - 0.0051 16.3 0.1 0.0078 15.7 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|14601295|ref|NP_147830.1| - 0.034 13.8 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Cation_efflux PF01545.16 gi|14601296|ref|NP_147831.1| - 3.2e-23 82.2 1.2 4.1e-23 81.8 0.8 1.1 1 0 0 1 1 1 1 Cation efflux family 2-Hacid_dh_C PF02826.14 gi|118431387|ref|NP_147833.2| - 2.2e-36 124.6 0.0 2.9e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|118431387|ref|NP_147833.2| - 1.3e-15 57.0 0.0 1.6e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain tRNA_synt_1c_R1 PF04558.10 gi|118431387|ref|NP_147833.2| - 0.23 11.0 0.2 0.36 10.3 0.2 1.2 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 DAO PF01266.19 gi|118431388|ref|NP_147834.2| - 2e-50 171.7 1.2 2.3e-50 171.4 0.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|118431388|ref|NP_147834.2| - 8.5e-06 25.9 0.3 0.00012 22.1 0.4 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|118431388|ref|NP_147834.2| - 2.5e-05 24.1 1.8 6.4e-05 22.9 1.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|118431388|ref|NP_147834.2| - 4.4e-05 23.4 0.2 0.017 14.9 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|118431388|ref|NP_147834.2| - 0.0011 17.8 2.3 0.0015 17.4 1.6 1.4 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|118431388|ref|NP_147834.2| - 0.0046 17.3 0.5 0.53 10.7 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|118431388|ref|NP_147834.2| - 0.0048 16.0 0.3 0.0048 16.0 0.2 1.7 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|118431388|ref|NP_147834.2| - 0.098 11.1 0.3 1 7.7 0.3 2.1 2 0 0 2 2 2 0 HI0933-like protein ThiF PF00899.16 gi|118431388|ref|NP_147834.2| - 0.18 11.6 0.5 0.31 10.8 0.3 1.3 1 0 0 1 1 1 0 ThiF family NTP_transf_2 PF01909.18 gi|118431389|ref|NP_147835.2| - 2.8e-14 53.2 0.1 3.9e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|118431389|ref|NP_147835.2| - 0.001 19.1 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase beta palm BolA PF01722.13 gi|118431389|ref|NP_147835.2| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 BolA-like protein Cas_Cas5d PF09704.5 gi|118431389|ref|NP_147835.2| - 0.044 13.4 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) HEPN PF05168.9 gi|118431390|ref|NP_147836.2| - 1.7e-34 118.2 0.1 2e-34 118.0 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|118431390|ref|NP_147836.2| - 0.7 9.7 2.7 2.1 8.2 1.0 2.4 2 1 0 2 2 2 0 Archaeal PaREP1/PaREP8 family QRPTase_C PF01729.14 gi|118431391|ref|NP_147837.2| - 3.9e-24 85.0 0.0 5.5e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|118431391|ref|NP_147837.2| - 1.9e-05 24.4 0.0 5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribosomal_S2 PF00318.15 gi|118431391|ref|NP_147837.2| - 0.11 11.6 0.0 0.25 10.5 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein S2 BtpA PF03437.10 gi|118431391|ref|NP_147837.2| - 0.15 11.3 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 BtpA family Beta_elim_lyase PF01212.16 gi|14601303|ref|NP_147838.1| - 1.2e-82 277.3 0.0 1.4e-82 277.1 0.0 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|14601303|ref|NP_147838.1| - 0.0073 15.3 0.0 0.028 13.4 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|14601303|ref|NP_147838.1| - 0.09 11.2 0.0 0.46 8.9 0.0 2.1 3 0 0 3 3 3 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) OKR_DC_1 PF01276.15 gi|14601303|ref|NP_147838.1| - 0.17 10.4 0.0 0.25 9.8 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Metallophos_2 PF12850.2 gi|14601304|ref|NP_147839.1| - 9.8e-05 22.2 0.0 0.00013 21.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Herpes_pp38 PF04846.8 gi|14601307|ref|NP_147842.1| - 0.18 11.1 9.9 0.087 12.1 0.5 3.1 1 1 2 3 3 3 0 Herpesvirus pp38 phosphoprotein Acyl_transf_3 PF01757.17 gi|14601307|ref|NP_147842.1| - 0.44 9.3 17.4 0.48 9.1 12.0 1.1 1 0 0 1 1 1 0 Acyltransferase family Yip1 PF04893.12 gi|14601307|ref|NP_147842.1| - 0.92 8.9 24.6 1.2 8.5 17.0 1.2 1 0 0 1 1 1 0 Yip1 domain RibD_C PF01872.12 gi|118431394|ref|NP_147843.2| - 2.2e-38 131.8 0.0 2.4e-38 131.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain HD PF01966.17 gi|14601310|ref|NP_147845.1| - 4.4e-05 23.4 1.9 0.00057 19.8 1.3 2.7 1 1 0 1 1 1 1 HD domain Hist_deacetyl PF00850.14 gi|118431397|ref|NP_147847.2| - 1.5e-40 139.4 0.0 2e-40 139.0 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain T2SG PF08334.6 gi|118431397|ref|NP_147847.2| - 0.11 12.2 0.0 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein G Molybdopterin PF00384.17 gi|118431398|ref|NP_147849.2| - 4.8e-133 444.0 0.0 5.8e-133 443.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|118431398|ref|NP_147849.2| - 1.2e-19 70.1 0.1 2.2e-19 69.2 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|118431398|ref|NP_147849.2| - 0.0028 17.5 3.0 0.0073 16.2 2.1 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|118431399|ref|NP_147850.2| - 3e-37 126.4 8.0 3e-37 126.4 5.6 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.1 gi|118431399|ref|NP_147850.2| - 5.2e-24 83.5 0.0 8.3e-24 82.9 0.0 1.3 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_10 PF13237.1 gi|118431399|ref|NP_147850.2| - 1.4e-07 31.2 18.7 1.6e-05 24.6 3.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|118431399|ref|NP_147850.2| - 1.5e-06 27.7 17.2 0.01 15.6 1.1 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|118431399|ref|NP_147850.2| - 1.7e-06 28.3 18.6 3e-05 24.3 4.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|118431399|ref|NP_147850.2| - 0.00061 20.1 3.9 0.048 14.0 0.1 3.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|118431399|ref|NP_147850.2| - 0.0026 17.9 21.6 0.17 12.1 6.0 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|118431399|ref|NP_147850.2| - 0.013 16.0 14.9 0.1 13.2 1.8 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|118431399|ref|NP_147850.2| - 0.014 15.2 18.6 0.51 10.2 1.0 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|118431399|ref|NP_147850.2| - 0.018 15.0 11.7 0.34 10.9 0.0 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|118431399|ref|NP_147850.2| - 0.063 12.9 19.3 0.096 12.3 1.5 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|118431399|ref|NP_147850.2| - 0.07 13.4 15.3 0.4 11.0 0.2 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|118431399|ref|NP_147850.2| - 0.14 12.0 19.0 0.1 12.4 1.0 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fusion_gly PF00523.13 gi|118431399|ref|NP_147850.2| - 0.26 9.2 0.1 0.37 8.7 0.1 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0 Fer4_3 PF12798.2 gi|118431399|ref|NP_147850.2| - 1 10.0 32.6 0.42 11.3 2.6 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|118431399|ref|NP_147850.2| - 2.4 8.0 6.1 4.3 7.2 0.7 2.9 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster EB_dh PF09459.5 gi|14601316|ref|NP_147851.1| - 3.1e-28 98.9 0.0 7.1e-28 97.7 0.0 1.6 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase TMEM191C PF15194.1 gi|14601317|ref|NP_147852.1| - 6.1 6.7 12.7 2.4 8.0 1.3 2.9 1 1 2 3 3 3 0 TMEM191C family Nitrate_red_del PF02613.10 gi|118431400|ref|NP_147854.2| - 1.5e-20 73.4 0.3 1.7e-20 73.2 0.2 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit ABC_tran PF00005.22 gi|118431401|ref|NP_147855.2| - 6.3e-31 107.5 0.0 9.1e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431401|ref|NP_147855.2| - 9.1e-18 65.2 0.1 2e-15 57.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|118431401|ref|NP_147855.2| - 1e-06 29.2 0.1 2.1e-06 28.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|118431401|ref|NP_147855.2| - 1.1e-06 28.1 0.1 1.4e-05 24.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|118431401|ref|NP_147855.2| - 5.2e-05 22.6 0.1 9.6e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|118431401|ref|NP_147855.2| - 5.2e-05 22.4 0.1 0.00055 19.0 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|118431401|ref|NP_147855.2| - 9.7e-05 22.4 0.0 0.00015 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|118431401|ref|NP_147855.2| - 0.00088 19.4 3.7 0.0024 18.0 0.4 2.3 2 1 0 2 2 1 1 AAA domain AAA PF00004.24 gi|118431401|ref|NP_147855.2| - 0.0013 18.9 0.0 0.0022 18.2 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|118431401|ref|NP_147855.2| - 0.0016 18.1 0.1 0.0084 15.8 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain UPF0079 PF02367.12 gi|118431401|ref|NP_147855.2| - 0.0021 17.7 0.1 0.005 16.4 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 ABC_ATPase PF09818.4 gi|118431401|ref|NP_147855.2| - 0.0026 16.4 0.2 0.028 12.9 0.1 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|118431401|ref|NP_147855.2| - 0.0028 17.0 0.0 0.0042 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|118431401|ref|NP_147855.2| - 0.004 16.3 0.0 0.0064 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|118431401|ref|NP_147855.2| - 0.0041 16.7 0.1 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118431401|ref|NP_147855.2| - 0.0097 16.7 1.0 0.046 14.5 0.2 2.2 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|118431401|ref|NP_147855.2| - 0.017 14.8 0.2 0.037 13.7 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|118431401|ref|NP_147855.2| - 0.028 13.8 0.2 1.1 8.6 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|118431401|ref|NP_147855.2| - 0.041 13.7 0.1 0.37 10.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|118431401|ref|NP_147855.2| - 0.043 13.7 0.2 0.19 11.6 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|118431401|ref|NP_147855.2| - 0.044 13.7 0.0 0.087 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|118431401|ref|NP_147855.2| - 0.045 13.6 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|118431401|ref|NP_147855.2| - 0.052 13.2 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|118431401|ref|NP_147855.2| - 0.052 13.1 0.1 0.093 12.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|118431401|ref|NP_147855.2| - 0.056 12.9 0.0 0.094 12.2 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|118431401|ref|NP_147855.2| - 0.069 12.5 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF2813 PF11398.3 gi|118431401|ref|NP_147855.2| - 0.075 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) T2SE PF00437.15 gi|118431401|ref|NP_147855.2| - 0.077 11.8 0.3 0.13 11.1 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|118431401|ref|NP_147855.2| - 0.08 12.5 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|118431401|ref|NP_147855.2| - 0.12 11.5 0.0 0.43 9.7 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein ATP-synt_ab PF00006.20 gi|118431401|ref|NP_147855.2| - 0.13 11.6 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MutS_V PF00488.16 gi|118431401|ref|NP_147855.2| - 0.14 11.4 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V NB-ARC PF00931.17 gi|118431401|ref|NP_147855.2| - 0.16 10.8 0.1 0.3 9.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Peripla_BP_6 PF13458.1 gi|118431402|ref|NP_147857.2| - 2.7e-59 201.2 0.3 3.3e-59 200.9 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|118431402|ref|NP_147857.2| - 0.00037 19.3 0.0 0.00076 18.3 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein domain BPD_transp_2 PF02653.11 gi|118431403|ref|NP_147858.2| - 8.7e-31 106.8 38.1 8.7e-31 106.8 26.4 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component TMEM237 PF15383.1 gi|118431403|ref|NP_147858.2| - 0.19 10.8 1.0 0.41 9.7 0.0 2.0 2 0 0 2 2 2 0 Transmembrane protein 237 BPD_transp_2 PF02653.11 gi|14601324|ref|NP_147859.1| - 7.5e-26 90.6 36.6 8.9e-26 90.4 25.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component AMP-binding PF00501.23 gi|14601325|ref|NP_147860.1| - 2.5e-82 276.5 0.0 3.3e-82 276.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Herpes_UL36 PF03586.8 gi|14601325|ref|NP_147860.1| - 0.047 12.7 0.0 0.28 10.2 0.0 2.1 2 0 0 2 2 2 0 Herpesvirus UL36 tegument protein ABC_tran PF00005.22 gi|14601326|ref|NP_147861.1| - 4.6e-30 104.7 0.0 6.1e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14601326|ref|NP_147861.1| - 2.4e-09 37.6 0.0 5.9e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|14601326|ref|NP_147861.1| - 6e-08 32.1 0.8 1.1e-07 31.4 0.0 1.8 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|14601326|ref|NP_147861.1| - 0.00056 20.3 0.0 0.00081 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|14601326|ref|NP_147861.1| - 0.0026 17.2 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|14601326|ref|NP_147861.1| - 0.0063 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 cobW PF02492.14 gi|14601326|ref|NP_147861.1| - 0.0083 15.5 0.4 0.37 10.2 0.0 2.5 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.1 gi|14601326|ref|NP_147861.1| - 0.0095 15.0 0.1 1 8.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|14601326|ref|NP_147861.1| - 0.01 15.1 0.8 0.088 12.0 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|14601326|ref|NP_147861.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|14601326|ref|NP_147861.1| - 0.016 15.1 0.4 0.053 13.4 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|14601326|ref|NP_147861.1| - 0.032 13.6 0.7 1 8.7 0.1 2.5 1 1 2 3 3 3 0 AAA-like domain Arch_ATPase PF01637.13 gi|14601326|ref|NP_147861.1| - 0.046 13.4 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|14601326|ref|NP_147861.1| - 0.078 11.5 2.9 3.1 6.2 0.6 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.20 gi|14601326|ref|NP_147861.1| - 0.088 12.3 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|14601326|ref|NP_147861.1| - 0.11 12.7 0.2 4.6 7.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|14601326|ref|NP_147861.1| - 0.11 12.4 0.2 0.18 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|14601326|ref|NP_147861.1| - 0.13 12.7 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_22 PF13401.1 gi|14601326|ref|NP_147861.1| - 0.16 12.1 0.4 0.73 9.9 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|14601326|ref|NP_147861.1| - 0.25 12.1 1.2 1.9 9.3 0.1 2.4 3 0 0 3 3 3 0 AAA domain AMP-binding PF00501.23 gi|14601327|ref|NP_147862.1| - 7.3e-63 212.3 0.0 9.1e-63 212.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|14601327|ref|NP_147862.1| - 7.6e-06 26.7 0.2 1.9e-05 25.5 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4129 PF13559.1 gi|118431404|ref|NP_147863.2| - 1.2e-08 34.8 6.0 1.2e-08 34.8 4.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) YndJ PF14158.1 gi|118431405|ref|YP_874887.1| - 0.027 13.5 0.4 0.027 13.5 0.3 1.5 2 0 0 2 2 2 0 YndJ-like protein AAA_3 PF07726.6 gi|14601331|ref|NP_147866.1| - 4.3e-64 213.9 0.0 6.6e-64 213.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|14601331|ref|NP_147866.1| - 6.7e-17 61.5 0.0 1e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|14601331|ref|NP_147866.1| - 1.6e-07 30.4 0.0 2.2e-06 26.7 0.0 2.1 1 1 1 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|14601331|ref|NP_147866.1| - 1.4e-06 28.5 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|14601331|ref|NP_147866.1| - 1.6e-05 24.4 0.0 0.00014 21.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|14601331|ref|NP_147866.1| - 7.4e-05 21.9 0.0 0.0004 19.5 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|14601331|ref|NP_147866.1| - 0.00016 20.9 1.0 0.022 13.9 0.3 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|14601331|ref|NP_147866.1| - 0.00018 21.5 0.1 0.0009 19.2 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|14601331|ref|NP_147866.1| - 0.0083 16.9 0.0 0.025 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|14601331|ref|NP_147866.1| - 0.025 14.3 0.1 0.067 12.9 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase_2 PF13335.1 gi|14601331|ref|NP_147866.1| - 0.097 13.0 0.1 0.3 11.5 0.0 1.9 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI DUF58 PF01882.13 gi|118431406|ref|NP_147867.2| - 1.5e-22 79.5 0.0 3.5e-22 78.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|118431406|ref|NP_147867.2| - 0.018 15.1 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain IncA PF04156.9 gi|14601334|ref|NP_147869.1| - 0.032 13.8 8.8 0.033 13.7 6.1 1.0 1 0 0 1 1 1 0 IncA protein AAA_33 PF13671.1 gi|14601334|ref|NP_147869.1| - 0.06 13.2 0.1 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|14601334|ref|NP_147869.1| - 0.22 12.3 0.9 0.95 10.2 0.6 1.9 1 1 0 1 1 1 0 AAA domain DUF1206 PF06724.6 gi|14601334|ref|NP_147869.1| - 1.5 8.5 9.3 0.24 11.1 2.0 2.1 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) DUF3188 PF11384.3 gi|14601334|ref|NP_147869.1| - 2.7 7.6 7.1 27 4.4 4.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3188) tRNA_anti-codon PF01336.20 gi|118431409|ref|NP_147870.2| - 9.5e-10 38.1 0.3 1.4e-09 37.6 0.2 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain GTP_EFTU_D2 PF03144.20 gi|118431409|ref|NP_147870.2| - 0.045 13.8 0.4 0.096 12.8 0.0 1.7 2 1 0 2 2 2 0 Elongation factor Tu domain 2 GRP PF07172.6 gi|118431409|ref|NP_147870.2| - 0.076 13.4 1.3 0.12 12.8 0.9 1.4 1 0 0 1 1 1 0 Glycine rich protein family Acetyltransf_1 PF00583.19 gi|14601336|ref|NP_147871.1| - 2.2e-13 50.0 0.0 6e-13 48.6 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|14601336|ref|NP_147871.1| - 1.2e-08 35.2 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|14601336|ref|NP_147871.1| - 5.2e-08 32.9 0.0 6.2e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|14601336|ref|NP_147871.1| - 1.9e-05 24.3 0.0 3.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|14601336|ref|NP_147871.1| - 8.1e-05 22.7 0.1 0.0005 20.1 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|14601336|ref|NP_147871.1| - 0.00018 21.5 0.0 0.00025 21.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|14601336|ref|NP_147871.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.2 gi|14601336|ref|NP_147871.1| - 0.1 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Radical_SAM PF04055.16 gi|118431410|ref|NP_147872.2| - 8.8e-06 25.9 0.1 6e-05 23.2 0.1 2.4 2 1 0 2 2 2 1 Radical SAM superfamily Hydantoinase_A PF01968.13 gi|118431411|ref|NP_147873.2| - 1.3e-91 306.7 6.1 9.2e-91 303.9 0.3 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|118431411|ref|NP_147873.2| - 1.7e-50 170.9 0.0 5.4e-50 169.3 0.0 1.9 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|118431411|ref|NP_147873.2| - 0.033 12.5 1.1 1.9 6.7 0.0 2.1 2 0 0 2 2 2 0 MutL protein BcrAD_BadFG PF01869.15 gi|118431411|ref|NP_147873.2| - 0.036 13.3 0.0 1.3 8.2 0.0 2.3 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family EutA PF06277.6 gi|118431411|ref|NP_147873.2| - 1.3 7.5 2.7 0.86 8.1 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA Hydantoinase_B PF02538.9 gi|14601339|ref|NP_147874.1| - 7.5e-158 526.0 0.0 9.1e-158 525.7 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Cupin_6 PF12852.2 gi|14601339|ref|NP_147874.1| - 0.064 12.8 0.0 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 Cupin ABM PF03992.11 gi|14601340|ref|NP_147875.1| - 1.8e-17 63.1 2.5 2.2e-17 62.8 1.7 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF3291 PF11695.3 gi|14601340|ref|NP_147875.1| - 0.001 18.5 0.1 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3291) Dehydratase_hem PF13816.1 gi|14601340|ref|NP_147875.1| - 0.0025 16.9 0.0 0.0025 16.9 0.0 1.0 1 0 0 1 1 1 1 Haem-containing dehydratase DUF1330 PF07045.6 gi|14601340|ref|NP_147875.1| - 0.015 15.1 0.9 0.063 13.1 0.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1330) Peptidase_M42 PF05343.9 gi|118431412|ref|NP_147876.2| - 5.1e-88 294.6 0.0 5.8e-88 294.4 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|118431412|ref|NP_147876.2| - 7.7e-14 51.6 0.1 1.2e-13 50.9 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|118431412|ref|NP_147876.2| - 7.9e-10 38.7 0.2 9e-09 35.3 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|118431412|ref|NP_147876.2| - 6.9e-05 21.5 0.0 9.4e-05 21.0 0.0 1.2 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) Amino_oxidase PF01593.19 gi|14602204|ref|NP_147877.1| - 2e-15 56.8 4.6 8.3e-15 54.7 3.2 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|14602204|ref|NP_147877.1| - 2.4e-14 53.0 12.1 4.5e-13 48.8 8.4 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|14602204|ref|NP_147877.1| - 9.7e-11 41.5 0.2 9.7e-11 41.5 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|14602204|ref|NP_147877.1| - 1.8e-09 37.0 6.2 2.6e-06 26.5 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|14602204|ref|NP_147877.1| - 2.9e-09 36.5 1.6 2e-08 33.7 0.5 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|14602204|ref|NP_147877.1| - 2.8e-07 29.8 0.0 5.5e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|14602204|ref|NP_147877.1| - 4.1e-07 28.8 0.4 9.6e-05 21.0 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|14602204|ref|NP_147877.1| - 8.6e-07 28.1 0.5 1.7e-05 23.8 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|14602204|ref|NP_147877.1| - 4.7e-05 23.7 1.1 0.00028 21.2 0.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|14602204|ref|NP_147877.1| - 5.4e-05 23.1 0.1 0.00012 22.0 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|14602204|ref|NP_147877.1| - 9.6e-05 21.5 1.5 9.6e-05 21.5 1.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|14602204|ref|NP_147877.1| - 0.0001 22.4 0.4 0.0042 17.1 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|14602204|ref|NP_147877.1| - 0.0046 15.9 0.0 0.0075 15.2 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|14602204|ref|NP_147877.1| - 0.011 14.3 0.8 0.021 13.4 0.0 1.7 2 0 0 2 2 2 0 Tryptophan halogenase GMC_oxred_N PF00732.14 gi|14602204|ref|NP_147877.1| - 0.012 14.7 0.6 0.021 13.9 0.0 1.6 2 0 0 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.13 gi|14602204|ref|NP_147877.1| - 0.064 12.9 0.4 0.11 12.1 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF996 PF06195.8 gi|118431413|ref|NP_147878.2| - 0.22 11.5 29.6 0.047 13.6 14.4 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF996) DUF973 PF06157.6 gi|118431414|ref|NP_147879.2| - 4.9 6.0 10.2 7.9 5.3 6.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF973) Topoisom_bac PF01131.15 gi|118431415|ref|NP_147880.2| - 2.8e-82 276.7 0.0 1.3e-79 267.8 0.0 2.9 2 1 0 2 2 2 1 DNA topoisomerase Toprim PF01751.17 gi|118431415|ref|NP_147880.2| - 1.6e-19 69.6 0.0 3.4e-19 68.6 0.0 1.6 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|118431415|ref|NP_147880.2| - 2.2e-10 40.3 0.0 4.8e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|118431415|ref|NP_147880.2| - 4.9e-09 35.9 0.0 7.7e-05 22.4 0.0 3.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DZR PF12773.2 gi|118431415|ref|NP_147880.2| - 0.0025 17.6 2.4 0.13 12.0 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|118431415|ref|NP_147880.2| - 0.0041 16.2 0.5 0.0041 16.2 0.3 2.7 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|118431415|ref|NP_147880.2| - 0.0059 16.0 0.7 0.0059 16.0 0.5 2.5 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|118431415|ref|NP_147880.2| - 0.023 14.3 4.5 1.1 8.9 0.3 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain ResIII PF04851.10 gi|118431415|ref|NP_147880.2| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit UPF0547 PF10571.4 gi|118431415|ref|NP_147880.2| - 0.37 10.5 0.0 0.37 10.5 0.0 3.7 4 0 0 4 4 3 0 Uncharacterised protein family UPF0547 Terminase_6 PF03237.10 gi|118431415|ref|NP_147880.2| - 0.37 9.5 0.0 1 8.0 0.0 1.8 1 0 0 1 1 1 0 Terminase-like family DUF35_N PF12172.3 gi|118431415|ref|NP_147880.2| - 0.4 10.6 9.4 0.34 10.8 0.8 3.4 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.6 gi|118431415|ref|NP_147880.2| - 0.41 10.5 1.8 21 5.0 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|118431415|ref|NP_147880.2| - 0.81 9.6 7.5 13 5.8 1.5 2.9 2 1 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|118431415|ref|NP_147880.2| - 1.1 8.9 3.4 1.7 8.3 0.2 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family AAA_25 PF13481.1 gi|118431415|ref|NP_147880.2| - 1.3 8.3 7.9 0.081 12.3 0.2 2.8 3 1 0 3 3 3 0 AAA domain CN_hydrolase PF00795.17 gi|14601345|ref|NP_147881.1| - 1.8e-09 37.2 0.0 2.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase EamA PF00892.15 gi|118431416|ref|NP_147882.2| - 0.00012 22.0 2.0 0.00017 21.6 1.4 1.2 1 0 0 1 1 1 1 EamA-like transporter family PSI_8 PF00796.13 gi|118431416|ref|NP_147882.2| - 0.12 12.0 0.9 1 8.9 0.3 2.5 2 0 0 2 2 2 0 Photosystem I reaction centre subunit VIII EamA PF00892.15 gi|14601347|ref|NP_147883.1| - 2.7e-22 79.1 15.1 2.7e-22 79.1 10.5 2.3 3 0 0 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|14601347|ref|NP_147883.1| - 8e-05 22.8 7.7 8e-05 22.8 5.3 3.6 1 1 2 4 4 4 1 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|14601347|ref|NP_147883.1| - 0.028 13.5 0.5 0.028 13.5 0.3 2.0 2 1 0 2 2 2 0 Nucleotide-sugar transporter TPT PF03151.11 gi|14601347|ref|NP_147883.1| - 4.9 6.7 16.3 9.4 5.8 5.3 3.1 2 1 0 2 2 2 0 Triose-phosphate Transporter family AMP-binding PF00501.23 gi|118431417|ref|NP_147884.2| - 1.4e-85 287.2 0.0 1.8e-85 286.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|118431417|ref|NP_147884.2| - 8.4e-19 68.3 0.4 2.3e-18 66.8 0.3 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4287 PF14117.1 gi|118431417|ref|NP_147884.2| - 0.11 12.2 0.1 25 4.6 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) MoaC PF01967.16 gi|118431419|ref|NP_147886.2| - 5.9e-45 152.2 2.3 6.6e-45 152.1 1.6 1.0 1 0 0 1 1 1 1 MoaC family DUF3409 PF11889.3 gi|118431419|ref|NP_147886.2| - 0.5 10.1 2.8 0.36 10.5 0.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3409) Helicase_C PF00271.26 gi|118431420|ref|NP_147888.2| - 1.5e-12 47.2 0.0 2.5e-11 43.2 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|118431420|ref|NP_147888.2| - 3.1e-11 43.0 0.0 1.1e-10 41.2 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|118431420|ref|NP_147888.2| - 0.039 13.7 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF3782 PF12644.2 gi|118431420|ref|NP_147888.2| - 0.05 13.4 0.8 0.12 12.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) PadR PF03551.9 gi|118431422|ref|NP_147893.2| - 3.2e-21 74.8 0.1 4.6e-21 74.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AphA_like PF14557.1 gi|118431422|ref|NP_147893.2| - 4.6e-05 23.0 0.0 8.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator adh_short PF00106.20 gi|118431423|ref|NP_147894.2| - 6.6e-14 52.1 1.3 1.2e-13 51.3 0.9 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|118431423|ref|NP_147894.2| - 1.9e-11 44.1 0.0 2.3e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|118431423|ref|NP_147894.2| - 1.5e-08 34.5 0.3 2.4e-08 33.8 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|118431423|ref|NP_147894.2| - 0.041 13.3 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Sigma70_r4 PF04545.11 gi|118431423|ref|NP_147894.2| - 0.09 12.1 0.3 0.63 9.3 0.0 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 Sp100 PF03172.8 gi|118431424|ref|NP_147895.2| - 0.078 12.9 0.1 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Sp100 domain RNA_Me_trans PF04252.8 gi|118431425|ref|NP_147896.2| - 9.7e-91 302.4 0.0 1.1e-90 302.2 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase RHH_1 PF01402.16 gi|118431426|ref|NP_147897.2| - 0.0002 21.1 0.8 0.0014 18.4 0.0 2.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3670 PF12419.3 gi|118431426|ref|NP_147897.2| - 0.012 15.0 0.1 4 6.8 0.0 2.4 2 0 0 2 2 2 0 SNF2 Helicase protein CheR_N PF03705.10 gi|118431426|ref|NP_147897.2| - 0.081 12.3 1.6 0.19 11.1 0.0 2.5 3 0 0 3 3 3 0 CheR methyltransferase, all-alpha domain GGDN PF05165.7 gi|118431427|ref|NP_147898.2| - 2.4e-98 328.0 0.3 2.9e-98 327.8 0.2 1.0 1 0 0 1 1 1 1 GGDN family DMRL_synthase PF00885.14 gi|118431428|ref|NP_147899.2| - 7.4e-37 126.2 0.3 8.2e-37 126.0 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase AAA PF00004.24 gi|14601365|ref|NP_147901.1| - 6.4e-102 337.0 0.0 1.4e-51 174.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|14601365|ref|NP_147901.1| - 3e-27 94.3 0.2 1.6e-26 92.0 0.5 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|14601365|ref|NP_147901.1| - 2e-16 59.7 0.0 2.6e-08 33.1 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|14601365|ref|NP_147901.1| - 7.2e-16 58.5 0.0 7.6e-09 35.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|14601365|ref|NP_147901.1| - 1.6e-15 57.5 0.1 5.5e-08 33.0 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|14601365|ref|NP_147901.1| - 4.8e-14 53.2 0.6 1.4e-07 32.3 0.1 3.3 2 2 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|14601365|ref|NP_147901.1| - 3.4e-13 49.0 1.9 2.7e-12 46.1 0.1 3.0 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|14601365|ref|NP_147901.1| - 6.9e-13 48.8 0.5 4.5e-05 23.6 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|14601365|ref|NP_147901.1| - 7.7e-12 45.2 0.0 5.4e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|14601365|ref|NP_147901.1| - 9.6e-12 44.8 1.0 0.00016 21.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|14601365|ref|NP_147901.1| - 4.1e-11 42.2 0.0 6.8e-05 21.7 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|14601365|ref|NP_147901.1| - 5.2e-11 42.5 0.0 4.4e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|14601365|ref|NP_147901.1| - 7.7e-10 38.5 0.4 0.00034 20.4 0.0 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.12 gi|14601365|ref|NP_147901.1| - 2.6e-09 36.7 0.7 0.0025 17.2 0.1 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|14601365|ref|NP_147901.1| - 2.8e-09 36.3 0.0 0.00016 20.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|14601365|ref|NP_147901.1| - 5.5e-09 36.4 0.1 0.00028 21.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|14601365|ref|NP_147901.1| - 1.1e-08 34.7 0.3 0.0071 16.0 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain AAA_28 PF13521.1 gi|14601365|ref|NP_147901.1| - 1.4e-08 34.8 0.0 0.0023 17.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|14601365|ref|NP_147901.1| - 2e-07 30.6 10.7 0.028 13.8 0.5 5.0 2 2 3 5 5 5 2 AAA domain RNA_helicase PF00910.17 gi|14601365|ref|NP_147901.1| - 2e-07 31.1 0.0 0.0033 17.5 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|14601365|ref|NP_147901.1| - 9.8e-07 28.1 3.1 0.014 14.5 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|14601365|ref|NP_147901.1| - 1.1e-06 28.6 0.0 0.016 15.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|14601365|ref|NP_147901.1| - 1.9e-06 27.6 0.1 0.018 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|14601365|ref|NP_147901.1| - 2.1e-06 27.6 0.4 0.0018 17.9 0.1 3.5 2 2 2 4 4 4 1 Archaeal ATPase NACHT PF05729.7 gi|14601365|ref|NP_147901.1| - 4.3e-06 26.4 0.8 0.26 10.9 0.0 4.0 4 0 0 4 4 4 2 NACHT domain KaiC PF06745.8 gi|14601365|ref|NP_147901.1| - 4.6e-06 25.9 2.7 0.077 12.0 0.0 3.6 3 1 1 4 4 4 2 KaiC Sigma54_activat PF00158.21 gi|14601365|ref|NP_147901.1| - 1.3e-05 24.7 0.1 0.39 10.1 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|14601365|ref|NP_147901.1| - 1.8e-05 24.5 0.0 0.0016 18.1 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein PhoH PF02562.11 gi|14601365|ref|NP_147901.1| - 2.3e-05 23.7 0.9 0.11 11.6 0.1 2.8 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|14601365|ref|NP_147901.1| - 2.4e-05 24.6 0.0 0.38 11.0 0.0 2.8 3 0 0 3 3 2 2 ABC transporter DUF815 PF05673.8 gi|14601365|ref|NP_147901.1| - 3.2e-05 22.9 0.0 0.12 11.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Parvo_NS1 PF01057.12 gi|14601365|ref|NP_147901.1| - 3.2e-05 22.9 0.5 0.04 12.7 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|14601365|ref|NP_147901.1| - 3.6e-05 23.3 0.0 0.11 12.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|14601365|ref|NP_147901.1| - 6.1e-05 22.1 0.0 0.022 13.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|14601365|ref|NP_147901.1| - 0.00018 21.4 0.0 0.12 12.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase UPF0079 PF02367.12 gi|14601365|ref|NP_147901.1| - 0.00022 20.8 0.0 0.26 10.9 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|14601365|ref|NP_147901.1| - 0.0011 18.6 1.1 11 5.7 0.0 4.2 3 1 1 4 4 3 0 NTPase AAA_11 PF13086.1 gi|14601365|ref|NP_147901.1| - 0.0012 18.4 0.0 0.95 8.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain IPT PF01745.11 gi|14601365|ref|NP_147901.1| - 0.0018 17.4 0.1 1.9 7.6 0.0 2.6 2 0 0 2 2 2 1 Isopentenyl transferase T2SE PF00437.15 gi|14601365|ref|NP_147901.1| - 0.0036 16.2 0.0 0.45 9.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein NB-ARC PF00931.17 gi|14601365|ref|NP_147901.1| - 0.0042 15.9 0.0 1.4 7.6 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain ATP-synt_ab PF00006.20 gi|14601365|ref|NP_147901.1| - 0.0086 15.5 0.0 4.2 6.8 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|14601365|ref|NP_147901.1| - 0.0086 15.6 0.0 6.1 6.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.1 gi|14601365|ref|NP_147901.1| - 0.009 15.9 0.1 0.75 9.6 0.0 2.7 3 0 0 3 3 2 1 Cytidylate kinase-like family ResIII PF04851.10 gi|14601365|ref|NP_147901.1| - 0.011 15.5 0.0 5.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|14601365|ref|NP_147901.1| - 0.016 14.6 2.7 4.6 6.5 0.1 3.5 2 2 0 2 2 2 0 AAA-like domain Molydop_binding PF01568.16 gi|14601365|ref|NP_147901.1| - 0.017 14.9 0.4 0.34 10.7 0.0 2.7 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain KTI12 PF08433.5 gi|14601365|ref|NP_147901.1| - 0.023 13.8 0.1 3.3 6.8 0.0 2.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.16 gi|14601365|ref|NP_147901.1| - 0.026 13.9 0.2 24 4.2 0.0 3.8 3 1 1 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|14601365|ref|NP_147901.1| - 0.029 13.1 0.0 6.3 5.4 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|14601365|ref|NP_147901.1| - 0.057 12.9 0.0 3.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|14601365|ref|NP_147901.1| - 0.078 12.5 0.0 9.6 5.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|14601365|ref|NP_147901.1| - 0.078 12.4 0.0 7.7 6.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_21 PF13304.1 gi|14601365|ref|NP_147901.1| - 0.15 11.9 1.3 17 5.2 1.3 3.0 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|14601365|ref|NP_147901.1| - 0.19 10.6 0.4 23 3.8 0.0 2.8 2 2 1 3 3 3 0 KAP family P-loop domain Rad17 PF03215.10 gi|14601365|ref|NP_147901.1| - 0.2 10.2 0.0 5 5.6 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|14601365|ref|NP_147901.1| - 0.21 11.8 0.3 16 5.7 0.0 2.9 3 0 0 3 3 2 0 AAA domain DUF4010 PF13194.1 gi|14601368|ref|NP_147904.1| - 9e-16 57.8 24.5 9e-16 57.8 17.0 3.3 2 2 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|14601368|ref|NP_147904.1| - 0.0018 18.1 12.4 0.0018 18.1 8.6 3.0 2 0 0 2 2 2 1 MgtC family PAS_5 PF07310.8 gi|118431430|ref|YP_874890.1| - 0.049 13.1 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 PAS domain Topoisom_bac PF01131.15 gi|118431431|ref|NP_147906.2| - 1.1e-94 317.5 0.0 2e-94 316.7 0.0 1.4 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.17 gi|118431431|ref|NP_147906.2| - 1.2e-21 76.4 0.0 2.9e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|118431431|ref|NP_147906.2| - 8e-12 44.9 0.0 2.3e-11 43.4 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|118431431|ref|NP_147906.2| - 5.1e-06 26.0 0.0 1.5e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain zf-ribbon_3 PF13248.1 gi|118431431|ref|NP_147906.2| - 1.7e-05 23.8 2.0 1.7e-05 23.8 1.4 2.1 2 0 0 2 2 2 1 zinc-ribbon domain ResIII PF04851.10 gi|118431431|ref|NP_147906.2| - 2.8e-05 24.0 0.0 5.4e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Toprim_4 PF13662.1 gi|118431431|ref|NP_147906.2| - 0.00023 21.1 0.1 0.0066 16.4 0.0 3.1 3 0 0 3 3 3 1 Toprim domain AAA_19 PF13245.1 gi|118431431|ref|NP_147906.2| - 0.0014 18.3 0.1 0.0065 16.1 0.1 2.2 1 0 0 1 1 1 1 Part of AAA domain zinc_ribbon_2 PF13240.1 gi|118431431|ref|NP_147906.2| - 0.0021 17.4 2.2 0.0021 17.4 1.5 2.0 2 0 0 2 2 2 1 zinc-ribbon domain Helicase_C PF00271.26 gi|118431431|ref|NP_147906.2| - 0.0044 16.8 0.0 0.65 9.9 0.0 3.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_30 PF13604.1 gi|118431431|ref|NP_147906.2| - 0.0054 16.3 0.1 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|118431431|ref|NP_147906.2| - 0.0092 16.1 0.0 0.046 13.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain DZR PF12773.2 gi|118431431|ref|NP_147906.2| - 0.013 15.2 0.4 0.013 15.2 0.3 2.1 2 0 0 2 2 2 0 Double zinc ribbon Cu_amine_oxidN2 PF02727.11 gi|118431431|ref|NP_147906.2| - 0.023 14.7 0.0 0.054 13.5 0.0 1.6 1 0 0 1 1 1 0 Copper amine oxidase, N2 domain IstB_IS21 PF01695.12 gi|118431431|ref|NP_147906.2| - 0.025 13.9 0.0 0.068 12.5 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein zf-NADH-PPase PF09297.6 gi|118431431|ref|NP_147906.2| - 0.1 12.1 5.2 0.14 11.6 0.4 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-C4pol PF14260.1 gi|118431431|ref|NP_147906.2| - 0.44 10.5 2.2 1.1 9.3 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta ABC_tran PF00005.22 gi|118431432|ref|NP_147907.2| - 2.9e-23 82.6 0.0 4.7e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431432|ref|NP_147907.2| - 3.6e-14 53.4 0.0 2.2e-07 31.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431432|ref|NP_147907.2| - 7.5e-06 25.3 0.0 0.0076 15.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|118431432|ref|NP_147907.2| - 7.7e-06 26.3 0.2 1.2e-05 25.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|118431432|ref|NP_147907.2| - 0.00013 21.5 0.9 0.19 11.1 0.2 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|118431432|ref|NP_147907.2| - 0.00051 19.2 0.0 0.52 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.1 gi|118431432|ref|NP_147907.2| - 0.0022 17.6 0.0 0.052 13.1 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|118431432|ref|NP_147907.2| - 0.0027 17.4 1.0 0.031 14.0 0.1 2.6 2 0 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|118431432|ref|NP_147907.2| - 0.012 15.0 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|118431432|ref|NP_147907.2| - 0.041 13.0 0.0 0.12 11.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|118431432|ref|NP_147907.2| - 0.045 13.6 0.3 1.3 8.8 0.1 2.4 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|118431432|ref|NP_147907.2| - 0.056 12.8 1.0 0.1 12.0 0.7 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|118431432|ref|NP_147907.2| - 0.057 13.3 0.1 1 9.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.1 gi|118431432|ref|NP_147907.2| - 0.058 13.9 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_22 PF13401.1 gi|118431432|ref|NP_147907.2| - 0.059 13.5 0.2 0.26 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|118431432|ref|NP_147907.2| - 0.06 13.0 0.2 0.89 9.2 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.1 gi|118431432|ref|NP_147907.2| - 0.06 13.3 0.8 0.2 11.6 0.6 2.1 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|118431432|ref|NP_147907.2| - 0.094 11.6 0.4 0.15 10.8 0.3 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.7 gi|118431432|ref|NP_147907.2| - 0.11 12.1 0.5 0.24 11.0 0.4 1.5 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|118431432|ref|NP_147907.2| - 0.15 11.7 0.1 0.29 10.7 0.1 1.4 1 0 0 1 1 1 0 Archaeal ATPase ABC2_membrane_4 PF12730.2 gi|118431433|ref|NP_147908.2| - 1.1e-08 34.5 26.2 2.3e-08 33.5 17.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein Pam17 PF08566.5 gi|118431433|ref|NP_147908.2| - 2.2 7.9 5.7 0.5 10.0 0.9 2.1 2 2 0 2 2 2 0 Mitochondrial import protein Pam17 Transp_cyt_pur PF02133.10 gi|14601373|ref|NP_147909.1| - 7.4e-21 74.2 30.5 7.4e-21 74.2 21.1 1.5 2 0 0 2 2 2 1 Permease for cytosine/purines, uracil, thiamine, allantoin DUF1469 PF07332.6 gi|14601373|ref|NP_147909.1| - 0.015 15.0 1.8 0.015 15.0 1.3 6.1 3 1 3 7 7 7 0 Protein of unknown function (DUF1469) Prenyltransf PF01255.14 gi|14601375|ref|NP_147911.1| - 6.1e-41 139.9 0.0 3.5e-20 72.0 0.0 2.0 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase ELFV_dehydrog PF00208.16 gi|118431434|ref|NP_147912.2| - 2.6e-72 243.3 2.1 3.2e-72 243.0 1.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|118431434|ref|NP_147912.2| - 2.2e-49 166.4 0.0 3.5e-49 165.7 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|118431434|ref|NP_147912.2| - 0.00016 20.8 0.2 0.00033 19.8 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|118431434|ref|NP_147912.2| - 0.0098 13.3 0.0 0.014 12.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase NAD_binding_7 PF13241.1 gi|118431434|ref|NP_147912.2| - 0.012 15.8 0.1 0.024 14.9 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding Oxidored_nitro PF00148.14 gi|118431434|ref|NP_147912.2| - 0.016 13.8 0.0 0.023 13.3 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AlaDh_PNT_C PF01262.16 gi|118431434|ref|NP_147912.2| - 0.045 13.3 2.0 0.056 13.0 0.3 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|118431434|ref|NP_147912.2| - 0.049 13.5 0.3 0.074 12.9 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|118431434|ref|NP_147912.2| - 0.073 12.9 1.3 0.2 11.4 0.9 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CENP-F_C_Rb_bdg PF10490.4 gi|118431435|ref|NP_147913.2| - 0.042 13.1 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF1028 PF06267.7 gi|118431436|ref|NP_147914.2| - 1.9e-71 239.4 0.0 2.5e-71 239.0 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.6 gi|118431436|ref|NP_147914.2| - 1.4e-27 95.5 0.7 7.2e-27 93.3 0.0 2.3 3 0 0 3 3 3 1 Putative peptidoglycan binding domain PG_binding_1 PF01471.13 gi|118431436|ref|NP_147914.2| - 0.071 13.0 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative peptidoglycan binding domain RuvA_C PF07499.8 gi|118431436|ref|NP_147914.2| - 3.9 7.7 5.9 9.7 6.4 0.3 2.7 3 0 0 3 3 3 0 RuvA, C-terminal domain SBP_bac_5 PF00496.17 gi|118431437|ref|NP_147915.2| - 1.5e-70 237.8 5.2 2.2e-70 237.4 3.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|118431438|ref|NP_147917.2| - 1.7e-37 128.7 14.3 1.7e-37 128.7 9.9 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ACR_tran PF00873.14 gi|118431438|ref|NP_147917.2| - 1.2 6.4 4.2 1.8 5.8 2.9 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family BPD_transp_1 PF00528.17 gi|14601382|ref|NP_147918.1| - 1.4e-28 99.6 14.4 1.4e-28 99.6 9.9 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|14601382|ref|NP_147918.1| - 0.00015 21.0 0.4 0.00015 21.0 0.3 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|14601383|ref|NP_147919.1| - 4.3e-23 82.1 0.0 5.7e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|14601383|ref|NP_147919.1| - 1.5e-21 76.5 0.6 2.6e-21 75.7 0.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|14601383|ref|NP_147919.1| - 4.2e-09 36.7 0.1 3.9e-08 33.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|14601383|ref|NP_147919.1| - 0.00027 20.4 0.0 0.57 9.5 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|14601383|ref|NP_147919.1| - 0.0018 17.7 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|14601383|ref|NP_147919.1| - 0.0031 17.0 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|14601383|ref|NP_147919.1| - 0.015 15.2 0.0 0.037 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|14601383|ref|NP_147919.1| - 0.036 14.2 1.4 0.65 10.1 1.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|14601383|ref|NP_147919.1| - 0.067 12.2 0.1 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|14601383|ref|NP_147919.1| - 0.098 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|118431439|ref|NP_147920.2| - 2.2e-29 102.5 0.0 2.9e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|118431439|ref|NP_147920.2| - 4.4e-20 71.7 0.4 7.3e-20 71.0 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|118431439|ref|NP_147920.2| - 1.6e-11 44.7 1.5 6.5e-08 32.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431439|ref|NP_147920.2| - 2.2e-05 23.8 0.2 0.00045 19.5 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|118431439|ref|NP_147920.2| - 0.00026 21.1 0.1 0.0013 18.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|118431439|ref|NP_147920.2| - 0.00064 18.9 0.4 0.0027 16.8 0.1 2.0 2 0 0 2 2 2 1 KaiC SbcCD_C PF13558.1 gi|118431439|ref|NP_147920.2| - 0.0086 15.9 0.0 0.055 13.3 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|118431439|ref|NP_147920.2| - 0.0091 15.4 0.2 0.72 9.2 0.1 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|118431439|ref|NP_147920.2| - 0.03 13.8 0.2 0.056 12.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|118431439|ref|NP_147920.2| - 0.036 14.2 0.0 0.75 9.9 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|118431439|ref|NP_147920.2| - 0.036 12.5 0.2 1.6 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|118431439|ref|NP_147920.2| - 0.042 13.2 0.1 0.48 9.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|118431439|ref|NP_147920.2| - 0.05 12.6 0.5 0.15 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|118431439|ref|NP_147920.2| - 0.14 12.4 0.0 0.55 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|118431439|ref|NP_147920.2| - 0.25 10.5 2.8 1.7 7.8 0.2 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein EPSP_synthase PF00275.15 gi|118431440|ref|NP_147921.2| - 5.4e-56 189.8 0.0 6.1e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Mitofilin PF09731.4 gi|118431441|ref|NP_147922.2| - 0.0034 16.1 6.1 0.0036 16.0 4.2 1.0 1 0 0 1 1 1 1 Mitochondrial inner membrane protein Apolipoprotein PF01442.13 gi|118431441|ref|NP_147922.2| - 0.0041 16.6 5.2 0.0063 16.0 3.6 1.4 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF2294 PF10057.4 gi|118431441|ref|NP_147922.2| - 0.017 14.7 0.4 0.029 14.0 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2294) RRF_GI PF12614.3 gi|118431441|ref|NP_147922.2| - 0.018 14.8 0.8 0.022 14.5 0.6 1.2 1 0 0 1 1 1 0 Ribosome recycling factor Muted PF14942.1 gi|118431441|ref|NP_147922.2| - 0.02 14.7 3.2 0.042 13.7 2.0 1.6 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein PA28_alpha PF02251.13 gi|118431441|ref|NP_147922.2| - 0.031 14.4 0.1 0.066 13.3 0.0 1.6 2 0 0 2 2 1 0 Proteasome activator pa28 alpha subunit Spo0A_C PF08769.6 gi|118431441|ref|NP_147922.2| - 0.071 12.9 0.6 1.9 8.3 0.0 2.0 1 1 1 2 2 2 0 Sporulation initiation factor Spo0A C terminal Baculo_PEP_C PF04513.7 gi|118431441|ref|NP_147922.2| - 0.078 12.8 0.4 0.15 11.9 0.2 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ATP-synt_D PF01813.12 gi|118431441|ref|NP_147922.2| - 0.086 12.3 3.1 0.1 12.1 2.2 1.2 1 0 0 1 1 1 0 ATP synthase subunit D DNA_pack_N PF02500.10 gi|118431441|ref|NP_147922.2| - 0.091 12.2 0.0 0.099 12.1 0.0 1.0 1 0 0 1 1 1 0 Probable DNA packing protein, N-terminus DUF3209 PF11483.3 gi|118431441|ref|NP_147922.2| - 0.093 13.0 8.8 0.23 11.7 6.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3209) DUF2217 PF10265.4 gi|118431441|ref|NP_147922.2| - 0.094 11.4 0.9 0.096 11.4 0.6 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) OmpH PF03938.9 gi|118431441|ref|NP_147922.2| - 0.11 12.3 2.4 0.14 12.0 1.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DDE_Tnp_1_3 PF13612.1 gi|118431441|ref|NP_147922.2| - 0.12 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain ISG65-75 PF11727.3 gi|118431441|ref|NP_147922.2| - 0.12 11.4 4.1 0.13 11.2 2.8 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein TBPIP PF07106.8 gi|118431441|ref|NP_147922.2| - 0.12 11.8 1.8 0.15 11.6 1.2 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF763 PF05559.6 gi|118431441|ref|NP_147922.2| - 0.19 10.6 0.8 0.21 10.5 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF763) GrpE PF01025.14 gi|118431441|ref|NP_147922.2| - 0.64 9.5 8.2 2 7.9 5.7 1.8 1 1 0 1 1 1 0 GrpE COG2 PF06148.6 gi|118431441|ref|NP_147922.2| - 0.96 9.3 3.6 4.9 7.0 0.2 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4140 PF13600.1 gi|118431441|ref|NP_147922.2| - 1.2 9.6 6.0 1.8 9.0 4.0 1.5 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) HK97-gp10_like PF04883.7 gi|118431441|ref|NP_147922.2| - 1.3 10.0 4.3 1.6 9.7 1.7 2.1 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component HSCB_C PF07743.8 gi|118431441|ref|NP_147922.2| - 1.4 9.4 8.8 1.4 9.3 2.3 2.5 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain FUSC PF04632.7 gi|118431441|ref|NP_147922.2| - 1.6 7.0 3.8 1.6 7.0 2.6 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family GTPase_Cys_C PF12631.2 gi|118431441|ref|NP_147922.2| - 3.8 7.9 5.2 4.9 7.6 1.7 2.1 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF883 PF05957.8 gi|118431441|ref|NP_147922.2| - 4.4 7.7 10.1 6 7.3 4.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4404 PF14357.1 gi|118431441|ref|NP_147922.2| - 5.7 7.4 8.1 2.6 8.5 1.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) HTH_41 PF14502.1 gi|118431443|ref|YP_874891.1| - 0.00083 18.9 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HemN_C PF06969.11 gi|118431443|ref|YP_874891.1| - 0.1 12.6 0.1 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Crp_2 PF13545.1 gi|118431443|ref|YP_874891.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain FdhE PF04216.7 gi|118431444|ref|NP_147924.2| - 7.5e-08 32.4 0.8 1.3e-07 31.6 0.6 1.3 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation UPF0547 PF10571.4 gi|118431444|ref|NP_147924.2| - 0.0019 17.8 10.3 0.009 15.6 2.5 3.5 2 1 0 2 2 2 1 Uncharacterised protein family UPF0547 Elf1 PF05129.8 gi|118431444|ref|NP_147924.2| - 0.013 15.1 0.3 0.89 9.2 0.0 2.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.6 gi|118431444|ref|NP_147924.2| - 0.013 14.9 12.6 1.2 8.7 0.1 4.3 3 1 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|118431444|ref|NP_147924.2| - 0.015 14.9 3.4 1.4 8.5 0.1 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-C3HC4_3 PF13920.1 gi|118431444|ref|NP_147924.2| - 0.033 13.8 2.7 0.033 13.8 1.9 1.9 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|118431444|ref|NP_147924.2| - 0.04 13.9 2.1 5.3 7.1 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|118431444|ref|NP_147924.2| - 0.053 13.3 4.5 1.5 8.7 3.1 2.5 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|118431444|ref|NP_147924.2| - 0.055 13.7 7.1 5.8 7.2 5.0 2.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF848 PF05852.6 gi|118431444|ref|NP_147924.2| - 0.14 12.0 0.4 0.22 11.3 0.3 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF4428 PF14471.1 gi|118431444|ref|NP_147924.2| - 0.19 11.5 0.5 0.6 9.8 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Nudix_N_2 PF14803.1 gi|118431444|ref|NP_147924.2| - 0.24 11.1 7.3 14 5.4 0.0 3.5 3 0 0 3 3 3 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.7 gi|118431444|ref|NP_147924.2| - 0.27 11.0 7.5 4.5 7.1 0.3 3.2 2 2 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|118431444|ref|NP_147924.2| - 0.55 10.0 11.3 14 5.6 4.6 3.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431444|ref|NP_147924.2| - 0.88 9.2 10.1 4.6 6.9 0.1 3.6 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|118431444|ref|NP_147924.2| - 0.96 9.1 3.1 5.2 6.8 0.7 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|118431444|ref|NP_147924.2| - 1 8.9 10.4 2.8 7.5 3.4 3.1 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|118431444|ref|NP_147924.2| - 1.6 7.9 14.1 0.077 12.2 2.2 3.0 2 2 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|118431444|ref|NP_147924.2| - 2.2 8.0 6.5 18 5.1 0.3 3.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prim_Zn_Ribbon PF08273.7 gi|118431444|ref|NP_147924.2| - 3 8.0 9.9 12 6.1 3.2 3.0 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.7 gi|118431444|ref|NP_147924.2| - 5.2 6.4 12.5 11 5.4 2.4 3.1 2 1 0 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.6 gi|118431444|ref|NP_147924.2| - 6.5 6.6 10.7 0.48 10.2 0.6 2.8 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4 PF00097.20 gi|118431444|ref|NP_147924.2| - 6.8 6.4 10.1 12 5.6 4.7 2.7 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-tcix PF14952.1 gi|118431444|ref|NP_147924.2| - 7.9 5.9 8.4 2.6 7.4 0.3 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Zn_ribbon_recom PF13408.1 gi|118431444|ref|NP_147924.2| - 9.4 6.5 9.6 30 4.9 0.1 3.4 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain CytB6-F_Fe-S PF08802.5 gi|118431445|ref|NP_147926.2| - 0.31 11.0 0.0 0.31 11.0 0.0 3.9 5 0 0 5 5 5 0 Cytochrome B6-F complex Fe-S subunit Oxidored_q1 PF00361.15 gi|118431447|ref|NP_147927.2| - 1.4e-27 96.6 11.7 1.4e-27 96.6 8.1 2.5 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Peptidase_U4 PF03419.8 gi|118431447|ref|NP_147927.2| - 0.045 12.8 2.6 0.13 11.3 1.8 1.7 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF3624 PF12292.3 gi|118431447|ref|NP_147927.2| - 1.7 9.1 11.2 1.4 9.3 0.2 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3624) Oxidored_q1 PF00361.15 gi|118431448|ref|NP_147928.2| - 6.2e-52 176.5 19.5 3.7e-49 167.3 11.6 5.3 4 2 0 4 4 4 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|118431448|ref|NP_147928.2| - 4.4e-09 35.7 0.8 4.4e-09 35.7 0.6 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4516 PF14990.1 gi|118431448|ref|NP_147928.2| - 6.7 6.3 10.0 2.8 7.5 0.1 4.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4516) Epiglycanin_C PF14654.1 gi|118431448|ref|NP_147928.2| - 9.1 6.3 9.8 19 5.3 0.2 3.5 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region Oxidored_q1 PF00361.15 gi|14601393|ref|NP_147929.1| - 4.5e-55 186.8 18.7 4.5e-55 186.8 12.9 2.1 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|14601393|ref|NP_147929.1| - 0.0019 17.7 0.3 0.0019 17.7 0.2 2.9 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|118431449|ref|NP_147930.2| - 9.9e-10 37.8 9.0 1.2e-09 37.6 6.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF485 PF04341.7 gi|118431449|ref|NP_147930.2| - 0.013 15.1 1.7 0.013 15.1 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF485 DUF3043 PF11241.3 gi|118431449|ref|NP_147930.2| - 0.87 9.1 3.0 1.3 8.6 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) BphX PF06139.7 gi|118431449|ref|NP_147930.2| - 2.4 7.7 8.1 2.9 7.4 5.6 1.1 1 0 0 1 1 1 0 BphX-like Amastin PF07344.6 gi|118431449|ref|NP_147930.2| - 5.1 6.7 8.4 0.34 10.4 2.5 1.4 2 0 0 2 2 2 0 Amastin surface glycoprotein Oxidored_q3 PF00499.15 gi|118431450|ref|NP_147931.2| - 5.6e-13 48.8 5.3 6.7e-13 48.6 3.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2754 PF10953.3 gi|118431450|ref|NP_147931.2| - 2.1 8.4 5.3 2.8 8.0 0.3 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2754) FtsX PF02687.16 gi|118431450|ref|NP_147931.2| - 3.8 7.2 15.2 9.6 5.9 10.5 1.7 1 1 0 1 1 1 0 FtsX-like permease family UPF0114 PF03350.11 gi|118431450|ref|NP_147931.2| - 4.5 7.2 8.5 0.44 10.4 2.7 1.7 2 0 0 2 2 2 0 Uncharacterized protein family, UPF0114 DUF4131 PF13567.1 gi|118431450|ref|NP_147931.2| - 7.9 5.8 11.6 2.7 7.3 2.7 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) Fer4 PF00037.22 gi|118431451|ref|NP_147932.2| - 5.2e-14 51.1 13.8 6.8e-09 34.9 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|118431451|ref|NP_147932.2| - 4.1e-12 45.7 19.4 1.8e-08 34.0 8.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|118431451|ref|NP_147932.2| - 1.3e-11 43.8 13.4 1.6e-06 27.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|118431451|ref|NP_147932.2| - 8.8e-11 42.0 9.0 1.5e-10 41.2 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|118431451|ref|NP_147932.2| - 3.1e-10 40.1 19.5 3.2e-08 33.7 7.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|118431451|ref|NP_147932.2| - 2e-08 34.8 18.8 9.7e-07 29.4 7.4 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|118431451|ref|NP_147932.2| - 5.5e-08 32.5 7.9 8.2e-08 31.9 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|118431451|ref|NP_147932.2| - 7.4e-08 32.1 12.5 0.00017 21.6 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|118431451|ref|NP_147932.2| - 7.5e-08 31.8 13.3 0.00022 20.9 1.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|118431451|ref|NP_147932.2| - 1.3e-07 31.8 2.5 0.0037 17.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|118431451|ref|NP_147932.2| - 6.4e-07 29.8 4.7 0.015 15.8 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|118431451|ref|NP_147932.2| - 9e-07 28.8 18.6 9.8e-05 22.3 8.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|118431451|ref|NP_147932.2| - 5.9e-05 23.3 8.8 0.082 13.3 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|118431451|ref|NP_147932.2| - 6.7e-05 23.2 4.9 0.1 13.0 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|118431451|ref|NP_147932.2| - 0.00013 22.2 17.4 0.0014 19.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|118431451|ref|NP_147932.2| - 0.0077 16.0 0.8 1.7 8.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NADHdh PF00146.16 gi|118431452|ref|NP_147933.2| - 1.1e-52 179.0 18.8 1.5e-52 178.6 13.0 1.1 1 0 0 1 1 1 1 NADH dehydrogenase DUF3742 PF12553.3 gi|118431452|ref|NP_147933.2| - 0.6 10.6 2.7 28 5.2 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3742) PGG PF13962.1 gi|118431452|ref|NP_147933.2| - 1.6 8.3 8.0 0.073 12.6 0.4 2.5 2 1 1 3 3 3 0 Domain of unknown function Complex1_49kDa PF00346.14 gi|14601398|ref|NP_147934.1| - 3e-59 200.2 0.0 4.1e-59 199.8 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|14601399|ref|NP_147935.1| - 2.8e-31 107.8 0.0 3.8e-31 107.3 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Glyoxalase_3 PF13468.1 gi|14601399|ref|NP_147935.1| - 0.034 14.0 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain PepSY PF03413.14 gi|14601399|ref|NP_147935.1| - 0.26 11.9 1.9 33 5.2 1.3 3.0 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain Oxidored_q6 PF01058.17 gi|118431453|ref|NP_147936.2| - 2.8e-20 72.2 0.1 4e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|118431454|ref|NP_147938.2| - 0.0049 16.6 1.4 0.016 15.0 1.0 1.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Cytochrom_B_N PF00033.14 gi|118431454|ref|NP_147938.2| - 0.019 14.2 1.1 0.029 13.7 0.8 1.4 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF4064 PF13273.1 gi|118431454|ref|NP_147938.2| - 0.81 9.8 6.3 2 8.5 4.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Exosortase_EpsH PF09721.5 gi|118431454|ref|NP_147938.2| - 1.9 7.5 12.1 0.34 10.0 3.8 2.0 2 0 0 2 2 2 0 Transmembrane exosortase (Exosortase_EpsH) DUF805 PF05656.9 gi|118431454|ref|NP_147938.2| - 5.3 6.8 6.3 6.3 6.6 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DDDD PF10161.4 gi|118431454|ref|NP_147938.2| - 8.4 6.0 6.4 7.3 6.2 0.9 2.7 2 1 1 3 3 3 0 Putative mitochondrial precursor protein GTP_EFTU PF00009.22 gi|14601403|ref|NP_147939.1| - 4.1e-61 205.6 0.1 5.9e-61 205.1 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|14601403|ref|NP_147939.1| - 4.8e-35 119.7 0.2 1.3e-33 115.1 0.0 3.0 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|14601403|ref|NP_147939.1| - 1.7e-23 82.2 0.1 4e-23 81.0 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|14601403|ref|NP_147939.1| - 1.3e-22 79.3 0.0 6.6e-22 77.1 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|14601403|ref|NP_147939.1| - 3e-13 49.6 0.2 9.2e-13 48.1 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|14601403|ref|NP_147939.1| - 3.8e-05 23.6 0.5 8.8e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|14601403|ref|NP_147939.1| - 0.033 13.4 0.1 0.41 9.8 0.0 2.2 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Dak2 PF02734.12 gi|14601403|ref|NP_147939.1| - 0.068 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 DAK2 domain G-alpha PF00503.15 gi|14601403|ref|NP_147939.1| - 0.25 9.9 0.0 0.43 9.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ERCC4 PF02732.10 gi|118431455|ref|NP_147940.2| - 4.4e-24 84.8 0.0 6.6e-24 84.2 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.18 gi|118431455|ref|NP_147940.2| - 4.5e-11 41.8 0.1 4.1e-06 26.1 0.1 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|118431455|ref|NP_147940.2| - 1.7e-10 40.6 0.0 1.3e-09 37.8 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|118431455|ref|NP_147940.2| - 4.3e-10 39.6 0.1 1.1e-09 38.3 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|118431455|ref|NP_147940.2| - 6.6e-05 22.7 0.1 0.0025 17.7 0.0 2.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|118431455|ref|NP_147940.2| - 0.00013 21.8 0.2 0.017 15.1 0.0 2.5 2 0 0 2 2 2 1 IMS family HHH motif 5_3_exonuc PF01367.15 gi|118431455|ref|NP_147940.2| - 0.0014 18.8 0.0 0.05 13.8 0.0 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|118431455|ref|NP_147940.2| - 0.0014 18.7 0.2 2.2 8.5 0.0 2.7 2 1 0 2 2 2 2 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|118431455|ref|NP_147940.2| - 0.0039 17.2 0.1 0.017 15.2 0.0 2.1 1 1 1 2 2 2 1 Transposase IS116/IS110/IS902 family RNA_pol_A_CTD PF03118.10 gi|118431455|ref|NP_147940.2| - 0.12 11.8 0.2 0.42 10.0 0.1 1.8 1 1 1 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain DHH PF01368.15 gi|118431456|ref|NP_147941.2| - 1.3e-13 50.8 0.0 2.1e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|118431456|ref|NP_147941.2| - 1.6e-10 40.5 0.6 4.5e-10 39.0 0.4 1.8 1 0 0 1 1 1 1 DHHA1 domain Lzipper-MIP1 PF14389.1 gi|118431457|ref|YP_874893.1| - 0.025 14.6 1.7 0.11 12.6 1.2 1.8 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Dynamitin PF04912.9 gi|118431457|ref|YP_874893.1| - 0.16 10.7 0.1 0.2 10.4 0.1 1.1 1 0 0 1 1 1 0 Dynamitin DUF2497 PF10691.4 gi|118431457|ref|YP_874893.1| - 0.17 11.8 1.5 0.27 11.2 1.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2497) Prefoldin_2 PF01920.15 gi|14601406|ref|NP_147942.1| - 9.7e-25 86.3 10.0 1.1e-24 86.2 6.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Nsp1_C PF05064.8 gi|14601406|ref|NP_147942.1| - 0.00039 20.0 3.4 0.0064 16.1 0.7 2.0 2 0 0 2 2 2 1 Nsp1-like C-terminal region Prefoldin PF02996.12 gi|14601406|ref|NP_147942.1| - 0.0028 17.3 7.3 0.0036 16.9 3.0 2.0 1 1 1 2 2 2 1 Prefoldin subunit DUF869 PF05911.6 gi|14601406|ref|NP_147942.1| - 0.0031 15.8 2.8 0.0038 15.5 1.9 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Cortex-I_coil PF09304.5 gi|14601406|ref|NP_147942.1| - 0.015 15.3 11.2 0.29 11.2 4.9 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil XhlA PF10779.4 gi|14601406|ref|NP_147942.1| - 0.016 15.0 1.8 0.023 14.5 0.5 1.7 2 0 0 2 2 2 0 Haemolysin XhlA CENP-F_leu_zip PF10473.4 gi|14601406|ref|NP_147942.1| - 0.059 13.2 12.1 0.94 9.3 5.1 2.0 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.7 gi|14601406|ref|NP_147942.1| - 0.06 13.0 6.2 0.12 12.1 4.3 1.5 1 1 0 1 1 1 0 Laminin Domain II Sipho_Gp157 PF05565.6 gi|14601406|ref|NP_147942.1| - 0.083 12.4 3.7 0.095 12.2 2.1 1.4 1 1 0 1 1 1 0 Siphovirus Gp157 ADIP PF11559.3 gi|14601406|ref|NP_147942.1| - 0.099 12.5 5.1 4.8 7.0 3.3 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DASH_Dad2 PF08654.5 gi|14601406|ref|NP_147942.1| - 0.12 12.3 3.4 0.12 12.3 1.3 1.7 2 0 0 2 2 2 0 DASH complex subunit Dad2 CENP-K PF11802.3 gi|14601406|ref|NP_147942.1| - 0.18 10.9 7.7 0.22 10.7 5.3 1.3 1 1 0 1 1 1 0 Centromere-associated protein K DUF1875 PF08961.5 gi|14601406|ref|NP_147942.1| - 0.36 10.1 5.1 0.44 9.8 3.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1875) V_ATPase_I PF01496.14 gi|14601406|ref|NP_147942.1| - 0.42 8.4 2.0 0.45 8.3 1.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Nup88 PF10168.4 gi|14601406|ref|NP_147942.1| - 0.69 7.6 4.3 0.78 7.5 3.0 1.0 1 0 0 1 1 1 0 Nuclear pore component CENP-Q PF13094.1 gi|14601406|ref|NP_147942.1| - 0.72 9.8 11.2 0.5 10.3 4.6 2.0 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Enkurin PF13864.1 gi|14601406|ref|NP_147942.1| - 0.78 9.9 10.9 1.3 9.2 0.1 2.5 2 1 0 2 2 2 0 Calmodulin-binding FbpA PF05833.6 gi|14601406|ref|NP_147942.1| - 0.97 7.9 12.1 0.52 8.7 2.1 2.0 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) DivIC PF04977.10 gi|14601406|ref|NP_147942.1| - 1.1 8.7 5.4 0.53 9.8 1.9 1.8 2 0 0 2 2 2 0 Septum formation initiator FlaC_arch PF05377.6 gi|14601406|ref|NP_147942.1| - 1.3 8.9 8.4 0.9 9.4 3.5 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF1319 PF07028.6 gi|14601406|ref|NP_147942.1| - 1.4 9.0 9.8 7.1 6.8 6.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) Seryl_tRNA_N PF02403.17 gi|14601406|ref|NP_147942.1| - 1.7 8.6 7.8 1.9 8.5 2.8 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|14601406|ref|NP_147942.1| - 1.8 8.1 10.7 3.5 7.1 7.4 1.5 1 1 0 1 1 1 0 IncA protein Viral_P18 PF04521.8 gi|14601406|ref|NP_147942.1| - 2.3 7.6 5.3 1.8 7.9 2.7 1.6 1 1 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein APG6 PF04111.7 gi|14601406|ref|NP_147942.1| - 3.4 6.6 11.6 2.5 7.0 5.2 1.8 1 1 0 2 2 2 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|14601406|ref|NP_147942.1| - 3.5 8.1 6.7 12 6.4 2.4 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) bZIP_1 PF00170.16 gi|14601406|ref|NP_147942.1| - 6.4 6.8 12.5 0.94 9.4 5.1 2.2 1 1 0 2 2 2 0 bZIP transcription factor FTA4 PF13093.1 gi|14601406|ref|NP_147942.1| - 7.9 5.8 8.6 23 4.3 5.9 1.7 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF972 PF06156.8 gi|14601406|ref|NP_147942.1| - 8.1 6.8 7.6 3.9e+02 1.4 5.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) TBPIP PF07106.8 gi|14601406|ref|NP_147942.1| - 9.7 5.7 10.7 10 5.6 4.8 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Pcc1 PF09341.5 gi|118431458|ref|YP_874894.1| - 2.3e-11 43.5 0.0 2.5e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 MS_channel PF00924.13 gi|118431459|ref|NP_147944.2| - 9.1e-52 175.3 0.5 1.2e-51 174.9 0.3 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF432 PF04254.8 gi|14601408|ref|NP_147945.1| - 6.9e-31 106.7 0.0 9.4e-31 106.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Brix PF04427.13 gi|118431460|ref|NP_147946.2| - 1e-16 61.2 0.0 1.1e-16 61.0 0.0 1.1 1 0 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.14 gi|14601410|ref|NP_147947.1| - 3.7e-30 103.6 4.6 3.9e-30 103.5 3.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|14601410|ref|NP_147947.1| - 0.00014 21.6 2.0 0.0002 21.0 1.4 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|14601410|ref|NP_147947.1| - 0.00072 19.1 0.6 0.001 18.6 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|14601410|ref|NP_147947.1| - 0.0017 18.2 0.5 0.087 12.7 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|14601410|ref|NP_147947.1| - 0.0031 17.5 3.1 0.0048 16.9 2.2 1.3 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase DUF4379 PF14311.1 gi|14601410|ref|NP_147947.1| - 0.024 14.4 3.5 0.15 11.9 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Lar_restr_allev PF14354.1 gi|14601410|ref|NP_147947.1| - 0.035 14.4 2.5 0.072 13.4 1.7 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|14601410|ref|NP_147947.1| - 0.049 12.9 0.9 0.08 12.2 0.6 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Elf1 PF05129.8 gi|14601410|ref|NP_147947.1| - 0.079 12.6 0.4 0.13 11.9 0.3 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DUF2082 PF09855.4 gi|14601410|ref|NP_147947.1| - 0.15 11.9 0.2 2.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-H2C2_2 PF13465.1 gi|14601410|ref|NP_147947.1| - 0.17 12.2 2.9 0.22 11.8 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain NOB1_Zn_bind PF08772.6 gi|14601410|ref|NP_147947.1| - 0.17 11.6 2.5 0.52 10.1 0.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like CpXC PF14353.1 gi|14601410|ref|NP_147947.1| - 0.19 11.7 0.7 0.91 9.4 0.0 1.9 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.1 gi|14601410|ref|NP_147947.1| - 0.19 11.7 2.6 3.6 7.6 0.1 2.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|14601410|ref|NP_147947.1| - 0.93 9.1 5.6 9.7 5.9 1.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|14601410|ref|NP_147947.1| - 2.9 7.2 5.4 5.1 6.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|14601410|ref|NP_147947.1| - 4.7 6.7 5.1 11 5.6 0.3 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain RNase_PH PF01138.16 gi|14601411|ref|NP_147948.1| - 2.3e-31 108.8 0.0 3.8e-30 104.9 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|14601411|ref|NP_147948.1| - 5.6e-11 42.2 1.1 1.1e-10 41.3 0.2 1.9 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 DUF3000 PF11452.3 gi|14601411|ref|NP_147948.1| - 0.02 14.1 0.0 0.03 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3000) Cloacin_immun PF03513.9 gi|14601411|ref|NP_147948.1| - 0.059 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Cloacin immunity protein RNase_PH PF01138.16 gi|14601412|ref|NP_147949.1| - 7.6e-37 126.5 0.0 1e-36 126.1 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|14601412|ref|NP_147949.1| - 9.3e-12 44.7 0.4 1.5e-11 44.0 0.3 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|14601413|ref|NP_147950.1| - 2.5e-09 36.6 0.2 5.9e-09 35.4 0.1 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|14601413|ref|NP_147950.1| - 2.7e-05 24.1 3.3 5.5e-05 23.1 0.0 2.8 4 0 0 4 4 4 1 S1 RNA binding domain KH_2 PF07650.12 gi|14601413|ref|NP_147950.1| - 0.00054 19.4 0.3 0.0012 18.3 0.2 1.5 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|14601413|ref|NP_147950.1| - 0.0027 17.3 0.0 0.0098 15.5 0.0 2.1 1 0 0 1 1 1 1 KH domain Proteasome PF00227.21 gi|14601414|ref|NP_147951.1| - 8.2e-60 201.3 0.1 3.3e-59 199.3 0.0 1.8 1 1 1 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|14601414|ref|NP_147951.1| - 1.7e-11 43.2 0.5 1.7e-11 43.2 0.3 1.8 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF2829 PF11195.3 gi|14601414|ref|NP_147951.1| - 0.043 14.3 0.3 0.11 13.0 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2829) RNase_P_p30 PF01876.11 gi|118431461|ref|NP_147952.2| - 4.4e-24 84.4 0.0 5.6e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Transketolase_C PF02780.15 gi|118431461|ref|NP_147952.2| - 0.094 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain RNA_binding PF01877.12 gi|118431462|ref|NP_147953.2| - 8.4e-34 116.1 0.1 1e-33 115.8 0.1 1.1 1 0 0 1 1 1 1 RNA binding COQ7 PF03232.8 gi|118431462|ref|NP_147953.2| - 0.14 11.5 0.0 0.22 11.0 0.0 1.3 1 1 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 Planc_extracel PF07595.7 gi|118431462|ref|NP_147953.2| - 0.51 10.1 2.1 0.48 10.1 0.3 1.9 2 0 0 2 2 2 0 Planctomycete extracellular Ribosomal_L15e PF00827.12 gi|14601417|ref|NP_147954.1| - 8.6e-82 273.2 8.5 1.1e-81 272.9 5.9 1.1 1 0 0 1 1 1 1 Ribosomal L15 E1-E2_ATPase PF00122.15 gi|118431463|ref|NP_147955.2| - 1.8e-57 194.0 1.2 2.3e-57 193.7 0.1 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|118431463|ref|NP_147955.2| - 1.3e-51 176.0 2.3 1.8e-51 175.6 0.7 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|118431463|ref|NP_147955.2| - 6.8e-22 77.3 0.9 2.3e-11 43.6 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|118431463|ref|NP_147955.2| - 4e-17 63.0 0.0 1.2e-16 61.4 0.0 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|118431463|ref|NP_147955.2| - 0.00061 19.4 0.0 0.0051 16.4 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|118431463|ref|NP_147955.2| - 0.0046 16.8 0.0 0.051 13.4 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Cupin_3 PF05899.7 gi|118431463|ref|NP_147955.2| - 0.019 14.3 1.9 5.6 6.4 0.5 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF861) Ferritin PF00210.19 gi|14601419|ref|NP_147956.1| - 2.9e-24 85.4 0.0 3.5e-24 85.1 0.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|14601419|ref|NP_147956.1| - 1e-09 38.8 0.8 0.00052 20.3 0.0 2.0 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.1 gi|14601419|ref|NP_147956.1| - 0.00078 19.3 0.0 0.00098 19.0 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Pyr_redox_dim PF02852.17 gi|14601420|ref|NP_147957.1| - 9.9e-33 112.4 0.3 1.8e-32 111.6 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|14601420|ref|NP_147957.1| - 1.1e-32 113.6 0.0 1.8e-32 112.8 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|14601420|ref|NP_147957.1| - 3.1e-12 46.3 3.7 2.7e-07 30.0 0.3 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|14601420|ref|NP_147957.1| - 4e-11 43.1 5.7 4e-10 39.9 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|14601420|ref|NP_147957.1| - 5.8e-10 38.5 12.6 9.5e-06 24.7 3.3 3.6 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|14601420|ref|NP_147957.1| - 1.6e-06 27.2 1.0 1.6e-06 27.2 0.7 2.9 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|14601420|ref|NP_147957.1| - 8.3e-06 26.0 0.4 0.00095 19.2 0.2 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|14601420|ref|NP_147957.1| - 0.00019 20.0 7.8 0.0013 17.3 2.1 2.7 2 1 1 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|14601420|ref|NP_147957.1| - 0.0023 16.8 4.5 0.0023 16.8 3.1 3.3 3 2 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|14601420|ref|NP_147957.1| - 0.0026 16.9 2.3 0.48 9.4 0.3 2.5 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.14 gi|14601420|ref|NP_147957.1| - 0.62 9.0 6.5 2.1 7.3 0.1 2.3 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.13 gi|14601420|ref|NP_147957.1| - 5.2 6.6 9.5 0.42 10.2 0.0 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AsnC_trans_reg PF01037.16 gi|118431464|ref|YP_874895.1| - 1.3e-15 56.7 0.4 2e-15 56.2 0.2 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|118431464|ref|YP_874895.1| - 7.4e-15 54.2 1.0 1.4e-14 53.3 0.4 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|118431464|ref|YP_874895.1| - 2e-14 52.7 1.3 3.1e-14 52.0 0.9 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|118431464|ref|YP_874895.1| - 4.5e-07 29.4 0.2 1.5e-06 27.7 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|118431464|ref|YP_874895.1| - 2.2e-06 27.1 3.3 2.7e-06 26.9 0.6 2.1 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|118431464|ref|YP_874895.1| - 1.5e-05 24.5 0.2 2.7e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|118431464|ref|YP_874895.1| - 6.3e-05 22.4 1.4 0.00012 21.6 0.5 1.8 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|118431464|ref|YP_874895.1| - 7.9e-05 22.2 0.2 0.00016 21.2 0.1 1.5 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|118431464|ref|YP_874895.1| - 8.3e-05 22.3 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|118431464|ref|YP_874895.1| - 0.00012 22.1 0.1 0.00017 21.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|118431464|ref|YP_874895.1| - 0.00013 21.4 0.1 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.5 gi|118431464|ref|YP_874895.1| - 0.00049 19.7 0.0 0.00081 19.0 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Sigma70_r4_2 PF08281.7 gi|118431464|ref|YP_874895.1| - 0.00067 19.0 1.4 0.00092 18.6 0.3 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Mga PF08280.6 gi|118431464|ref|YP_874895.1| - 0.00092 18.9 0.1 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.15 gi|118431464|ref|YP_874895.1| - 0.0011 18.6 0.2 0.0015 18.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|118431464|ref|YP_874895.1| - 0.0018 18.2 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|118431464|ref|YP_874895.1| - 0.0018 18.5 0.1 0.0034 17.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|118431464|ref|YP_874895.1| - 0.0027 16.9 0.1 0.0052 16.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|118431464|ref|YP_874895.1| - 0.0066 16.4 0.5 0.015 15.2 0.2 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|118431464|ref|YP_874895.1| - 0.012 14.7 0.1 0.03 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF4423 PF14394.1 gi|118431464|ref|YP_874895.1| - 0.015 14.8 0.1 0.035 13.6 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|118431464|ref|YP_874895.1| - 0.021 14.9 0.2 0.07 13.2 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator DUF2250 PF10007.4 gi|118431464|ref|YP_874895.1| - 0.021 14.6 0.1 0.056 13.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|118431464|ref|YP_874895.1| - 0.024 14.3 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LexA_DNA_bind PF01726.11 gi|118431464|ref|YP_874895.1| - 0.027 14.0 0.1 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_8 PF02954.14 gi|118431464|ref|YP_874895.1| - 0.05 13.1 1.1 0.089 12.3 0.1 1.9 2 0 0 2 2 1 0 Bacterial regulatory protein, Fis family NapD PF03927.8 gi|118431464|ref|YP_874895.1| - 0.058 13.2 0.4 0.093 12.5 0.3 1.3 1 0 0 1 1 1 0 NapD protein Fe_dep_repress PF01325.14 gi|118431464|ref|YP_874895.1| - 0.058 13.3 0.1 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|118431464|ref|YP_874895.1| - 0.061 12.8 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit PaaX PF07848.7 gi|118431464|ref|YP_874895.1| - 0.084 12.8 0.2 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein Replic_Relax PF13814.1 gi|118431464|ref|YP_874895.1| - 0.089 12.6 0.1 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Baseplate_J PF04865.9 gi|118431464|ref|YP_874895.1| - 0.092 12.0 0.2 0.12 11.7 0.1 1.1 1 0 0 1 1 1 0 Baseplate J-like protein GYD PF08734.6 gi|118431464|ref|YP_874895.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 GYD domain GntR PF00392.16 gi|118431464|ref|YP_874895.1| - 0.1 12.0 0.2 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family GcrA PF07750.6 gi|118431464|ref|YP_874895.1| - 0.12 12.5 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_DeoR PF08220.7 gi|118431464|ref|YP_874895.1| - 0.14 11.6 0.7 0.41 10.2 0.2 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_30 PF13556.1 gi|118431464|ref|YP_874895.1| - 0.18 11.4 0.7 0.54 9.8 0.1 2.0 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain AA_kinase PF00696.23 gi|118431465|ref|NP_147959.2| - 4.7e-32 111.4 1.6 5.3e-32 111.2 1.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|14601422|ref|NP_147960.1| - 1.8e-31 108.9 0.0 3e-31 108.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|14601422|ref|NP_147960.1| - 0.00089 18.3 0.0 0.0023 16.9 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|14601422|ref|NP_147960.1| - 0.052 14.0 0.0 0.099 13.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold HTH_Tnp_1 PF01527.15 gi|14601422|ref|NP_147960.1| - 0.095 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Transposase Desulfoferrod_N PF06397.7 gi|118431466|ref|YP_874896.1| - 0.034 13.5 4.0 0.55 9.6 0.2 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.7 gi|118431466|ref|YP_874896.1| - 0.1 11.9 3.9 0.18 11.1 2.7 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|118431466|ref|YP_874896.1| - 0.17 11.6 0.8 0.21 11.3 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RimK PF08443.6 gi|14601423|ref|NP_147961.1| - 7.1e-41 139.7 0.0 9e-41 139.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|14601423|ref|NP_147961.1| - 3e-13 49.9 0.0 4.5e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|14601423|ref|NP_147961.1| - 6.1e-07 28.4 0.0 1.2e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|14601423|ref|NP_147961.1| - 9.9e-07 28.7 0.0 2.1e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|14601423|ref|NP_147961.1| - 0.0022 17.3 0.0 0.012 14.8 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|14601423|ref|NP_147961.1| - 0.0047 16.2 0.0 0.0086 15.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|14601423|ref|NP_147961.1| - 0.0071 15.9 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Aminotran_3 PF00202.16 gi|14601424|ref|NP_147962.1| - 7.9e-83 278.1 0.0 1.2e-82 277.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.14 gi|14601424|ref|NP_147962.1| - 0.017 13.8 0.0 0.034 12.8 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V Peptidase_M20 PF01546.23 gi|77640972|ref|NP_147963.2| - 1.2e-22 80.4 0.1 1.8e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|77640972|ref|NP_147963.2| - 4.6e-12 45.6 0.1 8.5e-12 44.8 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain QueC PF06508.8 gi|118431467|ref|NP_147964.2| - 1.7e-39 135.2 0.0 3.7e-39 134.1 0.0 1.5 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|118431467|ref|NP_147964.2| - 0.00034 20.1 0.0 0.00048 19.6 0.0 1.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueF PF14489.1 gi|118431468|ref|NP_147965.2| - 1.9e-10 40.5 0.0 2.2e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.17 gi|118431468|ref|NP_147965.2| - 0.00027 20.2 0.0 0.00027 20.2 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I TPP_enzyme_C PF02775.16 gi|14601428|ref|NP_147966.1| - 1.2e-29 102.9 0.3 1.8e-29 102.3 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|14601428|ref|NP_147966.1| - 1.8e-12 47.0 0.3 9.4e-12 44.6 0.2 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Phage_DsbA PF11126.3 gi|14601428|ref|NP_147966.1| - 0.13 12.3 0.0 1.3 9.1 0.0 2.4 3 0 0 3 3 3 0 Transcriptional regulator DsbA POR_N PF01855.14 gi|118431469|ref|NP_147967.2| - 1.2e-56 191.7 0.1 2.1e-56 191.0 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|118431469|ref|NP_147967.2| - 2.2e-40 138.3 0.0 4.3e-40 137.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|118431469|ref|NP_147967.2| - 6.4e-07 29.3 0.0 3.1e-06 27.1 0.0 2.1 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|118431469|ref|NP_147967.2| - 0.014 14.9 0.3 0.048 13.1 0.1 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF340 PF03956.8 gi|14601431|ref|NP_147969.1| - 4.9e-50 169.4 27.2 4.9e-48 162.9 10.4 2.0 1 1 1 2 2 2 2 Membrane protein of unknown function (DUF340) DUF389 PF04087.9 gi|118431471|ref|NP_147970.2| - 7.3e-28 97.2 19.4 5.3e-26 91.2 9.9 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF389) NUDIX PF00293.23 gi|118431472|ref|NP_147971.2| - 1.5e-16 60.2 0.3 1.9e-16 59.9 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain tRNA_deacylase PF04414.7 gi|118431473|ref|NP_147972.2| - 1.1e-66 224.0 0.0 1.2e-66 223.8 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ECH PF00378.15 gi|118431474|ref|NP_147973.2| - 7.7e-72 241.3 0.0 1.2e-71 240.7 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|118431474|ref|NP_147973.2| - 2.9e-64 216.0 2.5 5.6e-64 215.0 1.8 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|118431474|ref|NP_147973.2| - 1.6e-51 172.6 0.7 2.5e-25 88.6 0.1 2.7 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|118431474|ref|NP_147973.2| - 9.5e-05 22.2 0.2 0.00024 20.9 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ECH_C PF13766.1 gi|118431474|ref|NP_147973.2| - 0.0048 17.0 0.0 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_Gly3P_dh_N PF01210.18 gi|118431474|ref|NP_147973.2| - 0.0076 15.9 1.7 0.08 12.6 0.6 2.9 1 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|118431474|ref|NP_147973.2| - 0.0095 15.1 0.7 0.045 12.9 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PALP PF00291.20 gi|118431476|ref|NP_147974.2| - 1.7e-52 178.6 0.7 2.1e-52 178.2 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme BPL_N PF09825.4 gi|118431476|ref|NP_147974.2| - 0.18 10.5 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal zinc_ribbon_2 PF13240.1 gi|118431476|ref|NP_147974.2| - 0.3 10.6 1.0 0.59 9.6 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431476|ref|NP_147974.2| - 0.63 9.7 5.7 1.5 8.5 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NAD_binding_7 PF13241.1 gi|118431477|ref|NP_147976.2| - 4.3e-19 68.6 0.0 1.1e-18 67.3 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|118431477|ref|NP_147976.2| - 0.00053 20.4 0.2 0.001 19.6 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|118431477|ref|NP_147976.2| - 0.0053 17.0 0.2 0.01 16.1 0.1 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PCMT PF01135.14 gi|118431477|ref|NP_147976.2| - 0.006 16.1 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 2-Hacid_dh_C PF02826.14 gi|118431477|ref|NP_147976.2| - 0.012 14.7 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|118431477|ref|NP_147976.2| - 0.022 14.4 0.5 0.049 13.2 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|118431477|ref|NP_147976.2| - 0.032 13.1 2.3 0.051 12.4 1.6 1.3 1 0 0 1 1 1 0 FAD binding domain FAD_binding_3 PF01494.14 gi|118431477|ref|NP_147976.2| - 0.043 12.8 1.9 0.065 12.2 1.3 1.2 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.15 gi|118431477|ref|NP_147976.2| - 0.06 13.4 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|118431477|ref|NP_147976.2| - 0.062 12.7 0.2 0.17 11.3 0.1 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA PPR_1 PF12854.2 gi|118431477|ref|NP_147976.2| - 0.077 12.4 0.1 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 PPR repeat UDPG_MGDP_dh_N PF03721.9 gi|118431477|ref|NP_147976.2| - 0.093 12.1 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|118431477|ref|NP_147976.2| - 0.19 12.1 3.6 0.62 10.5 2.5 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|118431477|ref|NP_147976.2| - 0.4 10.2 1.5 1 8.8 0.2 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|118431477|ref|NP_147976.2| - 0.42 10.5 2.1 0.71 9.8 1.4 1.6 1 1 0 1 1 1 0 NADH(P)-binding ThiF PF00899.16 gi|118431477|ref|NP_147976.2| - 1.1 9.1 4.0 2.8 7.7 2.8 1.7 1 0 0 1 1 1 0 ThiF family HEM4 PF02602.10 gi|14601439|ref|NP_147977.1| - 2.9e-22 79.0 0.2 3.6e-22 78.7 0.2 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD ABC_sub_bind PF04392.7 gi|14601440|ref|NP_147978.1| - 0.019 13.9 0.0 2.9 6.7 0.0 2.0 2 0 0 2 2 2 0 ABC transporter substrate binding protein Saccharop_dh PF03435.13 gi|14601440|ref|NP_147978.1| - 0.082 11.8 0.0 0.097 11.6 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase Aldo_ket_red PF00248.16 gi|118431478|ref|NP_147979.2| - 3.2e-43 147.5 0.0 3.6e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.16 gi|14601442|ref|NP_147980.1| - 3.9e-10 39.1 0.3 5.1e-10 38.8 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|14601442|ref|NP_147980.1| - 5.1e-06 26.5 0.0 6e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|14601442|ref|NP_147980.1| - 0.11 12.3 0.1 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) HTH_24 PF13412.1 gi|118431479|ref|NP_147981.2| - 1.6e-06 27.3 0.6 0.034 13.5 0.3 3.2 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|118431479|ref|NP_147981.2| - 0.00015 21.2 0.0 0.032 13.7 0.0 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|118431479|ref|NP_147981.2| - 0.015 14.9 0.0 0.28 10.8 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_36 PF13730.1 gi|118431479|ref|NP_147981.2| - 0.022 14.8 0.0 6.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|118431479|ref|NP_147981.2| - 0.042 13.6 0.0 5.3 6.9 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|118431479|ref|NP_147981.2| - 0.12 11.9 0.0 0.96 9.0 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain PALP PF00291.20 gi|118431480|ref|NP_147982.2| - 8.7e-81 271.4 4.6 1.1e-80 271.2 3.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|118431480|ref|NP_147982.2| - 0.001 18.4 0.0 0.0031 16.9 0.0 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|118431480|ref|NP_147982.2| - 0.07 13.4 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 ACT domain FrhB_FdhB_N PF04422.8 gi|118431480|ref|NP_147982.2| - 0.077 12.8 0.2 5.1 7.0 0.0 2.6 2 0 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term ACT_6 PF13740.1 gi|118431480|ref|NP_147982.2| - 0.077 12.7 0.0 0.22 11.2 0.0 1.8 1 1 0 1 1 1 0 ACT domain EAL PF00563.15 gi|118431480|ref|NP_147982.2| - 0.081 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 EAL domain Ribonuc_L-PSP PF01042.16 gi|118431481|ref|NP_147983.2| - 2.1e-39 133.9 0.0 2.4e-39 133.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Methyltransf_18 PF12847.2 gi|118431482|ref|NP_147984.2| - 3.2e-11 43.7 0.0 4.1e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|118431482|ref|NP_147984.2| - 6.4e-11 41.9 0.0 3.3e-09 36.3 0.0 2.1 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_31 PF13847.1 gi|118431482|ref|NP_147984.2| - 4.8e-09 35.9 0.0 6.3e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|118431482|ref|NP_147984.2| - 8.7e-08 31.5 0.0 1.4e-07 30.7 0.0 1.2 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|118431482|ref|NP_147984.2| - 9.1e-08 32.3 0.0 1.2e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|118431482|ref|NP_147984.2| - 5.3e-07 29.3 0.0 8.7e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|118431482|ref|NP_147984.2| - 3.1e-06 27.5 0.0 4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118431482|ref|NP_147984.2| - 3.9e-06 26.3 0.0 5.3e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|118431482|ref|NP_147984.2| - 3.5e-05 23.0 0.0 4.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.12 gi|118431482|ref|NP_147984.2| - 8.7e-05 21.6 0.0 0.00011 21.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|118431482|ref|NP_147984.2| - 8.9e-05 22.1 0.0 0.00011 21.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|118431482|ref|NP_147984.2| - 0.00031 20.7 0.0 0.00039 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|118431482|ref|NP_147984.2| - 0.00067 18.8 0.0 0.0009 18.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF633 PF04816.7 gi|118431482|ref|NP_147984.2| - 0.00073 18.9 0.0 0.00093 18.5 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF633) PrmA PF06325.8 gi|118431482|ref|NP_147984.2| - 0.00077 18.6 0.0 0.00099 18.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|118431482|ref|NP_147984.2| - 0.0022 18.4 0.0 0.0029 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|118431482|ref|NP_147984.2| - 0.0066 16.1 0.0 0.008 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|118431482|ref|NP_147984.2| - 0.011 14.9 0.0 0.014 14.6 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_20 PF12147.3 gi|118431482|ref|NP_147984.2| - 0.012 14.5 0.0 0.015 14.1 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_15 PF09445.5 gi|118431482|ref|NP_147984.2| - 0.017 14.6 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.1 gi|118431482|ref|NP_147984.2| - 0.03 15.1 0.0 0.041 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|118431482|ref|NP_147984.2| - 0.067 12.9 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|118431482|ref|NP_147984.2| - 0.077 12.3 0.0 0.099 12.0 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MetW PF07021.7 gi|118431482|ref|NP_147984.2| - 0.11 11.8 0.1 0.13 11.6 0.1 1.2 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|118431482|ref|NP_147984.2| - 0.11 12.0 0.1 0.16 11.5 0.1 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase MethyltransfD12 PF02086.10 gi|118431482|ref|NP_147984.2| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase KaiC PF06745.8 gi|118431483|ref|NP_147985.2| - 1.9e-86 288.9 0.0 2.1e-86 288.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|118431483|ref|NP_147985.2| - 1.4e-08 34.3 0.0 1.9e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|118431483|ref|NP_147985.2| - 5.2e-06 25.0 0.0 1.2e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|118431483|ref|NP_147985.2| - 0.012 15.3 0.4 0.029 14.1 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain T2SE PF00437.15 gi|118431483|ref|NP_147985.2| - 0.062 12.2 0.0 0.092 11.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PPV_E1_C PF00519.12 gi|118431483|ref|NP_147985.2| - 0.091 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase DUF2075 PF09848.4 gi|118431483|ref|NP_147985.2| - 0.12 11.2 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|118431483|ref|NP_147985.2| - 0.13 11.1 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain IMPDH PF00478.20 gi|118431484|ref|NP_147986.2| - 1.2e-109 366.4 0.0 1.4e-109 366.2 0.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|118431484|ref|NP_147986.2| - 2.2e-08 33.6 4.0 0.00036 19.8 1.5 2.6 3 0 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|118431484|ref|NP_147986.2| - 2.9e-07 29.6 7.3 1.4e-06 27.4 3.9 2.3 1 1 1 2 2 2 1 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|118431484|ref|NP_147986.2| - 2.4e-05 23.4 2.1 4.1e-05 22.6 1.5 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|118431484|ref|NP_147986.2| - 0.00014 20.8 2.1 0.0002 20.4 1.4 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|118431484|ref|NP_147986.2| - 0.017 14.2 1.5 0.039 13.0 1.0 1.6 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|118431484|ref|NP_147986.2| - 0.024 13.8 1.8 0.17 11.1 1.3 2.0 1 1 0 1 1 1 0 Histidine biosynthesis protein HutP PF09021.6 gi|118431484|ref|NP_147986.2| - 0.072 13.3 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 HutP DUF296 PF03479.10 gi|118431485|ref|NP_147988.2| - 2.2e-23 82.1 1.0 2.8e-23 81.7 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) CBS PF00571.23 gi|118431486|ref|NP_147989.2| - 5.7e-11 42.0 0.3 2.3e-06 27.3 0.0 3.5 4 0 0 4 4 4 2 CBS domain GHMP_kinases_C PF08544.8 gi|14601452|ref|NP_147990.1| - 1.1e-05 25.5 0.0 2.4e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|14601452|ref|NP_147990.1| - 0.0011 19.0 0.8 0.0022 18.0 0.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain NTP_transf_3 PF12804.2 gi|118431487|ref|NP_147991.2| - 5.2e-11 42.8 0.3 1.1e-10 41.8 0.2 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain RTC_insert PF05189.8 gi|118431487|ref|NP_147991.2| - 0.037 14.0 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 RNA 3'-terminal phosphate cyclase (RTC), insert domain CDP-OH_P_transf PF01066.16 gi|118431488|ref|NP_147993.2| - 1.5e-17 63.7 5.6 1.5e-17 63.7 3.9 2.2 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase NAD_binding_5 PF07994.7 gi|14601456|ref|NP_147994.1| - 7.8e-44 150.3 0.0 9e-44 150.1 0.0 1.0 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|14601456|ref|NP_147994.1| - 4e-24 84.6 0.0 5.7e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase zf-Tim10_DDP PF02953.10 gi|118431489|ref|YP_874899.1| - 0.00037 19.7 1.9 0.076 12.3 0.1 2.2 2 0 0 2 2 2 2 Tim10/DDP family zinc finger Antimicrobial21 PF14861.1 gi|118431489|ref|YP_874899.1| - 0.00037 19.9 4.3 0.00064 19.1 3.0 1.4 1 0 0 1 1 1 1 Plant antimicrobial peptide UPF0047 PF01894.12 gi|118431490|ref|NP_147996.2| - 7.6e-34 116.0 0.0 8.8e-34 115.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Rep_fac_C PF08542.6 gi|118431491|ref|NP_147997.2| - 6.2e-21 74.1 0.1 2.7e-20 72.1 0.0 2.1 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|118431491|ref|NP_147997.2| - 3.9e-16 59.4 0.0 8e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|118431491|ref|NP_147997.2| - 6.6e-16 58.3 0.1 8.3e-14 51.5 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|118431491|ref|NP_147997.2| - 9.9e-11 40.9 0.0 5.1e-07 28.7 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|118431491|ref|NP_147997.2| - 6.1e-09 35.2 0.0 1.6e-08 33.8 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|118431491|ref|NP_147997.2| - 4.3e-08 33.3 0.1 0.0099 16.0 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|118431491|ref|NP_147997.2| - 6.1e-08 32.8 0.1 0.00049 20.1 0.0 3.2 1 1 2 3 3 3 2 AAA ATPase domain AAA_3 PF07726.6 gi|118431491|ref|NP_147997.2| - 4.2e-07 29.6 0.0 9.3e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|118431491|ref|NP_147997.2| - 4.1e-06 27.1 0.1 2.8e-05 24.4 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|118431491|ref|NP_147997.2| - 8.7e-06 25.6 0.0 1.9e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|118431491|ref|NP_147997.2| - 1.6e-05 24.6 0.0 9.6e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DNA_pol3_delta PF06144.8 gi|118431491|ref|NP_147997.2| - 1.8e-05 24.2 0.0 0.00013 21.5 0.0 2.3 3 0 0 3 3 3 1 DNA polymerase III, delta subunit FtsK_SpoIIIE PF01580.13 gi|118431491|ref|NP_147997.2| - 2.3e-05 23.9 0.0 6.9e-05 22.4 0.0 1.8 1 1 1 2 2 2 1 FtsK/SpoIIIE family TIP49 PF06068.8 gi|118431491|ref|NP_147997.2| - 3.7e-05 22.6 0.0 0.038 12.7 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|118431491|ref|NP_147997.2| - 5.2e-05 22.7 0.0 0.0001 21.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|118431491|ref|NP_147997.2| - 9.9e-05 23.1 0.0 0.00026 21.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|118431491|ref|NP_147997.2| - 0.00011 21.4 0.0 0.0034 16.5 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|118431491|ref|NP_147997.2| - 0.00012 21.6 0.0 0.0061 16.0 0.0 2.7 1 1 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|118431491|ref|NP_147997.2| - 0.00015 21.4 0.0 0.00043 19.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|118431491|ref|NP_147997.2| - 0.00031 20.1 1.6 0.013 14.9 0.2 3.3 1 1 1 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|118431491|ref|NP_147997.2| - 0.00048 20.1 0.1 0.0027 17.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|118431491|ref|NP_147997.2| - 0.00065 19.5 0.0 0.0017 18.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|118431491|ref|NP_147997.2| - 0.00066 18.9 0.1 0.19 10.9 0.0 2.3 1 1 0 2 2 2 1 PhoH-like protein KTI12 PF08433.5 gi|118431491|ref|NP_147997.2| - 0.00089 18.5 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 T2SE PF00437.15 gi|118431491|ref|NP_147997.2| - 0.00091 18.1 0.0 0.0075 15.2 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_28 PF13521.1 gi|118431491|ref|NP_147997.2| - 0.0015 18.5 0.0 0.0035 17.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|118431491|ref|NP_147997.2| - 0.0017 17.3 0.0 0.0032 16.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|118431491|ref|NP_147997.2| - 0.0021 17.9 0.0 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) ResIII PF04851.10 gi|118431491|ref|NP_147997.2| - 0.0032 17.3 0.0 0.0092 15.8 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|118431491|ref|NP_147997.2| - 0.0043 17.1 0.0 0.01 15.9 0.0 1.7 1 1 0 1 1 1 1 RNA helicase Sigma54_activat PF00158.21 gi|118431491|ref|NP_147997.2| - 0.0054 16.2 0.1 0.21 11.0 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|118431491|ref|NP_147997.2| - 0.0056 16.4 0.0 0.082 12.5 0.0 2.1 1 1 1 2 2 2 1 Archaeal ATPase Zeta_toxin PF06414.7 gi|118431491|ref|NP_147997.2| - 0.0078 15.3 0.0 0.024 13.7 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin Viral_helicase1 PF01443.13 gi|118431491|ref|NP_147997.2| - 0.0081 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|118431491|ref|NP_147997.2| - 0.011 15.3 0.0 0.026 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|118431491|ref|NP_147997.2| - 0.012 15.1 0.1 3.5 7.0 0.0 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|118431491|ref|NP_147997.2| - 0.017 14.7 0.4 0.19 11.2 0.1 2.6 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|118431491|ref|NP_147997.2| - 0.022 13.7 0.0 0.14 11.0 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.15 gi|118431491|ref|NP_147997.2| - 0.025 14.2 0.0 0.088 12.4 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase NTPase_1 PF03266.10 gi|118431491|ref|NP_147997.2| - 0.028 14.1 0.0 0.34 10.6 0.0 2.2 1 1 1 2 2 2 0 NTPase DNA_pol3_gamma3 PF12169.3 gi|118431491|ref|NP_147997.2| - 0.036 13.8 0.8 4.9 6.8 0.1 3.3 3 0 0 3 3 3 0 DNA polymerase III subunits gamma and tau domain III SNF2_N PF00176.18 gi|118431491|ref|NP_147997.2| - 0.038 12.7 0.0 4.2 6.0 0.0 2.1 1 1 0 2 2 2 0 SNF2 family N-terminal domain NACHT PF05729.7 gi|118431491|ref|NP_147997.2| - 0.04 13.5 0.0 0.22 11.1 0.0 2.1 1 1 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.4 gi|118431491|ref|NP_147997.2| - 0.042 12.4 0.0 0.1 11.1 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KaiC PF06745.8 gi|118431491|ref|NP_147997.2| - 0.076 12.1 0.0 0.46 9.5 0.0 2.0 1 1 0 2 2 2 0 KaiC AAA_29 PF13555.1 gi|118431491|ref|NP_147997.2| - 0.094 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AraC_N PF06719.8 gi|118431491|ref|NP_147997.2| - 0.1 11.8 0.1 0.98 8.7 0.0 2.3 3 0 0 3 3 2 0 AraC-type transcriptional regulator N-terminus Torsin PF06309.6 gi|118431491|ref|NP_147997.2| - 0.11 12.3 0.0 0.37 10.6 0.0 1.8 2 0 0 2 2 1 0 Torsin MobB PF03205.9 gi|118431491|ref|NP_147997.2| - 0.13 11.9 0.0 0.41 10.3 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|118431491|ref|NP_147997.2| - 0.13 11.7 0.0 3.8 6.9 0.0 2.3 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|118431491|ref|NP_147997.2| - 0.14 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|118431492|ref|NP_147998.2| - 2.8e-17 63.1 0.0 7.5e-17 61.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|118431492|ref|NP_147998.2| - 3.3e-11 42.5 0.0 7.4e-05 21.6 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|118431492|ref|NP_147998.2| - 5.4e-10 38.7 0.0 6e-08 32.0 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|118431492|ref|NP_147998.2| - 6e-07 29.5 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|118431492|ref|NP_147998.2| - 1.1e-06 27.8 0.0 7.9e-06 24.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|118431492|ref|NP_147998.2| - 1.5e-06 29.0 0.4 8.1e-06 26.6 0.3 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431492|ref|NP_147998.2| - 2.6e-06 27.5 0.0 9.3e-05 22.4 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|118431492|ref|NP_147998.2| - 7.8e-06 25.6 0.0 1.8e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|118431492|ref|NP_147998.2| - 1.3e-05 24.9 0.0 6.3e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_22 PF13401.1 gi|118431492|ref|NP_147998.2| - 2.3e-05 24.5 0.0 0.00045 20.3 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|118431492|ref|NP_147998.2| - 5.3e-05 23.1 0.0 9.9e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|118431492|ref|NP_147998.2| - 0.00018 20.6 0.0 0.00035 19.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DNA_pol3_delta PF06144.8 gi|118431492|ref|NP_147998.2| - 0.0002 20.9 0.0 0.00037 20.0 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit TIP49 PF06068.8 gi|118431492|ref|NP_147998.2| - 0.00038 19.3 0.0 0.28 9.8 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|118431492|ref|NP_147998.2| - 0.00055 19.4 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|118431492|ref|NP_147998.2| - 0.002 18.2 0.0 0.0055 16.8 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Arch_ATPase PF01637.13 gi|118431492|ref|NP_147998.2| - 0.0043 16.7 0.0 0.017 14.8 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|118431492|ref|NP_147998.2| - 0.0061 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|118431492|ref|NP_147998.2| - 0.0081 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|118431492|ref|NP_147998.2| - 0.0088 15.7 0.0 0.2 11.2 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|118431492|ref|NP_147998.2| - 0.012 15.9 0.1 0.048 13.9 0.0 2.1 3 0 0 3 3 1 0 AAA domain AAA_25 PF13481.1 gi|118431492|ref|NP_147998.2| - 0.012 15.0 0.0 0.048 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|118431492|ref|NP_147998.2| - 0.015 14.7 0.0 0.037 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Parvo_NS1 PF01057.12 gi|118431492|ref|NP_147998.2| - 0.022 13.6 0.0 0.037 12.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|118431492|ref|NP_147998.2| - 0.029 13.9 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|118431492|ref|NP_147998.2| - 0.04 14.2 0.0 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_19 PF13245.1 gi|118431492|ref|NP_147998.2| - 0.048 13.4 0.0 0.16 11.7 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|118431492|ref|NP_147998.2| - 0.056 13.3 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|118431492|ref|NP_147998.2| - 0.065 13.2 0.0 0.2 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|118431492|ref|NP_147998.2| - 0.068 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|118431492|ref|NP_147998.2| - 0.12 11.9 0.2 0.36 10.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|118431492|ref|NP_147998.2| - 0.16 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CDP-OH_P_transf PF01066.16 gi|118431493|ref|NP_148000.2| - 3.9e-12 46.3 9.3 1.5e-11 44.4 6.5 1.9 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Glyco_trans_4_4 PF13579.1 gi|118431494|ref|NP_148002.2| - 6.1e-06 26.4 0.6 6.1e-06 26.4 0.4 2.3 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|118431494|ref|NP_148002.2| - 0.0081 15.8 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|118431494|ref|NP_148002.2| - 0.024 14.0 0.0 0.096 12.1 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferases group 1 FUN14 PF04930.10 gi|118431495|ref|NP_148003.2| - 7.9e-18 64.5 7.7 1.1e-17 64.1 5.3 1.2 1 0 0 1 1 1 1 FUN14 family DUF3464 PF11947.3 gi|118431495|ref|NP_148003.2| - 0.015 14.7 1.0 0.015 14.7 0.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3464) Radical_SAM PF04055.16 gi|118431496|ref|NP_148004.2| - 9.9e-29 100.6 0.2 2.2e-28 99.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|118431496|ref|NP_148004.2| - 1.7e-20 72.6 0.0 3.5e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|118431496|ref|NP_148004.2| - 5.8e-13 48.4 0.0 1.1e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 TRAM domain eIF-5_eIF-2B PF01873.12 gi|118431497|ref|NP_148005.2| - 1.3e-32 112.0 0.1 1.6e-32 111.8 0.1 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn_Tnp_IS1595 PF12760.2 gi|118431497|ref|NP_148005.2| - 0.0039 16.9 0.2 0.0064 16.2 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Elf1 PF05129.8 gi|118431497|ref|NP_148005.2| - 0.0057 16.3 0.4 0.0091 15.6 0.3 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|118431497|ref|NP_148005.2| - 0.0081 15.7 0.4 0.016 14.8 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|118431497|ref|NP_148005.2| - 0.012 14.8 0.9 2.8 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|118431497|ref|NP_148005.2| - 0.016 14.7 1.9 0.33 10.5 1.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|118431497|ref|NP_148005.2| - 0.019 15.2 0.8 0.049 13.9 0.5 1.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|118431497|ref|NP_148005.2| - 0.021 14.5 2.3 0.44 10.2 1.2 2.8 2 1 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|118431497|ref|NP_148005.2| - 0.022 14.6 0.6 0.042 13.7 0.4 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|118431497|ref|NP_148005.2| - 0.03 13.6 0.4 0.069 12.4 0.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DUF3797 PF12677.2 gi|118431497|ref|NP_148005.2| - 0.051 13.2 2.1 0.29 10.7 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) SUI1 PF01253.17 gi|118431497|ref|NP_148005.2| - 0.065 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor SUI1 DNA_RNApol_7kD PF03604.8 gi|118431497|ref|NP_148005.2| - 0.073 12.5 0.1 4.1 6.9 0.0 2.6 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GATA PF00320.22 gi|118431497|ref|NP_148005.2| - 0.081 12.2 0.4 0.13 11.5 0.3 1.3 1 0 0 1 1 1 0 GATA zinc finger Myb_DNA-bind_6 PF13921.1 gi|118431497|ref|NP_148005.2| - 0.14 12.3 0.2 0.27 11.3 0.2 1.7 1 1 0 1 1 1 0 Myb-like DNA-binding domain DUF678 PF05077.7 gi|118431497|ref|NP_148005.2| - 0.18 11.7 1.8 12 6.0 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF678) Zn-ribbon_8 PF09723.5 gi|118431497|ref|NP_148005.2| - 0.19 11.6 3.2 7.6 6.5 0.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_S27e PF01667.12 gi|118431497|ref|NP_148005.2| - 0.23 11.0 1.1 0.73 9.4 0.8 1.8 1 1 0 1 1 1 0 Ribosomal protein S27 PhnA_Zn_Ribbon PF08274.7 gi|118431497|ref|NP_148005.2| - 1.5 8.6 3.7 39 4.1 0.4 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.6 gi|118431497|ref|NP_148005.2| - 1.6 8.2 4.6 13 5.3 3.2 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1451 PF07295.6 gi|118431497|ref|NP_148005.2| - 2.3 8.0 4.9 28 4.4 3.4 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) Acetyltransf_6 PF13480.1 gi|14601468|ref|NP_148006.1| - 0.00027 20.9 1.1 0.00056 19.8 0.8 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Radical_SAM PF04055.16 gi|118431498|ref|NP_148007.2| - 3.6e-10 40.2 0.0 6.9e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|118431498|ref|NP_148007.2| - 9e-07 29.0 0.0 1.5e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|118431498|ref|NP_148007.2| - 1.2e-05 25.2 0.0 2.1e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TIM PF00121.13 gi|118431499|ref|NP_148008.2| - 4.4e-21 75.0 0.1 5.1e-19 68.2 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase IGPS PF00218.16 gi|118431499|ref|NP_148008.2| - 2e-06 27.0 0.1 6.1e-06 25.4 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|118431499|ref|NP_148008.2| - 2.2e-06 26.9 3.8 2.9e-06 26.5 2.2 1.5 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|118431499|ref|NP_148008.2| - 0.00021 20.6 1.0 0.0022 17.3 0.6 2.0 1 1 1 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|118431499|ref|NP_148008.2| - 0.0031 16.4 2.4 0.0057 15.5 1.7 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|118431499|ref|NP_148008.2| - 0.006 15.8 0.1 0.011 14.9 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|118431499|ref|NP_148008.2| - 0.0073 15.5 4.2 0.0084 15.2 2.9 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.9 gi|118431499|ref|NP_148008.2| - 0.093 11.6 0.6 0.15 11.0 0.4 1.5 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Helicase_RecD PF05127.9 gi|14601473|ref|NP_148011.1| - 4.1e-37 127.5 0.0 6.5e-37 126.8 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|14601473|ref|NP_148011.1| - 1e-24 86.9 0.5 4.1e-11 42.5 0.0 3.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.19 gi|14601473|ref|NP_148011.1| - 4.5e-12 45.8 0.1 2.6e-11 43.4 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|14601473|ref|NP_148011.1| - 6.7e-09 35.7 0.0 1.9e-08 34.3 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|14601473|ref|NP_148011.1| - 3e-07 30.5 0.0 1.3e-06 28.4 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|14601473|ref|NP_148011.1| - 0.0014 18.4 0.0 0.0079 16.0 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF1726 PF08351.6 gi|14601473|ref|NP_148011.1| - 0.0034 17.0 0.0 0.0076 15.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) AAA_16 PF13191.1 gi|14601473|ref|NP_148011.1| - 0.014 15.3 3.1 0.023 14.7 0.2 2.6 3 0 0 3 3 3 0 AAA ATPase domain FR47 PF08445.5 gi|14601473|ref|NP_148011.1| - 0.024 14.3 0.1 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein AAA_30 PF13604.1 gi|14601473|ref|NP_148011.1| - 0.032 13.8 0.0 0.11 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Acetyltransf_CG PF14542.1 gi|14601473|ref|NP_148011.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|14601473|ref|NP_148011.1| - 0.15 11.6 0.1 0.33 10.5 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF996 PF06195.8 gi|118431501|ref|NP_148012.2| - 1.6e-35 122.1 19.9 2.9e-35 121.3 13.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF996) zf-DHHC PF01529.15 gi|118431501|ref|NP_148012.2| - 9.6 5.5 11.3 8.9 5.6 2.6 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase CopD PF05425.8 gi|14601475|ref|NP_148013.1| - 6.3e-06 26.3 7.7 6.3e-06 26.3 5.3 2.0 1 1 1 2 2 2 1 Copper resistance protein D DUF2269 PF10027.4 gi|14601475|ref|NP_148013.1| - 0.00017 21.3 5.5 0.00017 21.3 3.8 2.0 1 1 1 2 2 2 1 Predicted integral membrane protein (DUF2269) UPF0093 PF03653.8 gi|14601475|ref|NP_148013.1| - 0.12 12.3 2.9 0.77 9.7 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0093) Peptidase_S9 PF00326.16 gi|118431502|ref|NP_148014.2| - 4.1e-41 140.5 0.0 3.6e-40 137.4 0.0 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|118431502|ref|NP_148014.2| - 1.6e-18 67.4 3.4 4.4e-17 62.7 1.3 3.1 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|118431502|ref|NP_148014.2| - 8.8e-17 61.2 0.1 4.2e-15 55.7 0.0 2.3 2 0 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|118431502|ref|NP_148014.2| - 1.3e-06 28.0 0.1 3.9e-06 26.5 0.2 1.5 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|118431502|ref|NP_148014.2| - 3.7e-06 26.3 0.1 0.00015 21.0 0.0 2.9 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|118431502|ref|NP_148014.2| - 1.5e-05 24.6 0.1 4.5e-05 23.1 0.1 1.7 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|118431502|ref|NP_148014.2| - 9.6e-05 22.1 0.0 0.00029 20.6 0.0 1.7 1 0 0 1 1 1 1 Putative lysophospholipase LIP PF03583.9 gi|118431502|ref|NP_148014.2| - 0.17 11.0 0.6 0.36 9.9 0.4 1.5 1 0 0 1 1 1 0 Secretory lipase COesterase PF00135.23 gi|118431502|ref|NP_148014.2| - 0.21 10.2 0.1 0.42 9.2 0.1 1.4 1 1 0 1 1 1 0 Carboxylesterase family ABC_tran PF00005.22 gi|118431503|ref|NP_148015.2| - 5.5e-27 94.7 0.0 7.3e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431503|ref|NP_148015.2| - 5.2e-16 59.4 0.0 6.2e-09 36.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431503|ref|NP_148015.2| - 2.4e-06 26.9 0.0 0.041 13.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|118431503|ref|NP_148015.2| - 0.00033 19.8 0.0 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|118431503|ref|NP_148015.2| - 0.00059 19.3 0.1 0.0011 18.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|118431503|ref|NP_148015.2| - 0.0018 18.3 0.3 0.0067 16.4 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|118431503|ref|NP_148015.2| - 0.0028 18.0 0.0 0.004 17.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118431503|ref|NP_148015.2| - 0.0028 18.4 0.0 0.0054 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|118431503|ref|NP_148015.2| - 0.0054 16.2 0.0 0.0071 15.8 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|118431503|ref|NP_148015.2| - 0.0076 15.8 0.1 0.023 14.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|118431503|ref|NP_148015.2| - 0.013 15.2 0.0 0.071 12.8 0.0 1.9 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|118431503|ref|NP_148015.2| - 0.022 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|118431503|ref|NP_148015.2| - 0.023 14.5 0.0 0.15 12.0 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|118431503|ref|NP_148015.2| - 0.026 13.9 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|118431503|ref|NP_148015.2| - 0.05 13.4 0.0 0.077 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|118431503|ref|NP_148015.2| - 0.057 13.1 0.0 0.091 12.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|118431503|ref|NP_148015.2| - 0.071 13.2 0.1 0.17 12.0 0.1 1.6 2 0 0 2 2 1 0 AAA domain DUF3584 PF12128.3 gi|118431503|ref|NP_148015.2| - 0.08 10.2 0.1 0.1 9.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_5 PF07728.9 gi|118431503|ref|NP_148015.2| - 0.083 12.6 0.2 1.3 8.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|118431503|ref|NP_148015.2| - 0.083 13.0 0.0 0.32 11.2 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|118431503|ref|NP_148015.2| - 0.12 11.8 0.2 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|118431503|ref|NP_148015.2| - 0.13 12.2 0.0 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|118431503|ref|NP_148015.2| - 0.13 12.0 0.0 0.13 12.0 0.0 2.3 3 0 0 3 3 1 0 Part of AAA domain AAA_24 PF13479.1 gi|118431503|ref|NP_148015.2| - 0.13 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|118431503|ref|NP_148015.2| - 0.14 11.6 0.1 0.23 10.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_3 PF12698.2 gi|118431504|ref|NP_148016.2| - 2.5e-14 53.0 1.7 3.8e-14 52.4 1.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|118431504|ref|NP_148016.2| - 0.00026 20.2 9.0 0.00046 19.4 3.5 2.1 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|118431504|ref|NP_148016.2| - 0.3 10.2 12.6 0.72 8.9 8.7 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein Voltage_CLC PF00654.15 gi|14601479|ref|NP_148017.1| - 2.3e-21 76.2 15.9 2.8e-21 75.9 11.1 1.1 1 0 0 1 1 1 1 Voltage gated chloride channel CBS PF00571.23 gi|14601479|ref|NP_148017.1| - 2.2e-14 52.9 0.5 1.5e-06 27.8 0.1 2.5 2 0 0 2 2 2 2 CBS domain Voltage_CLC PF00654.15 gi|118431505|ref|NP_148018.2| - 2e-47 161.9 3.4 2e-47 161.9 2.3 2.1 2 0 0 2 2 2 1 Voltage gated chloride channel ADH_zinc_N PF00107.21 gi|118431506|ref|NP_148020.2| - 2.2e-19 69.3 1.9 3.6e-19 68.5 0.1 2.1 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|118431506|ref|NP_148020.2| - 4.5e-11 43.7 0.1 7.6e-11 43.0 0.0 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|118431506|ref|NP_148020.2| - 6.4e-11 41.9 0.2 7.8e-09 35.2 0.0 3.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|118431506|ref|NP_148020.2| - 0.05 13.1 0.3 0.082 12.4 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain RmlD_sub_bind PF04321.12 gi|118431506|ref|NP_148020.2| - 0.087 11.6 0.1 11 4.7 0.1 2.5 2 1 1 3 3 3 0 RmlD substrate binding domain ELFV_dehydrog PF00208.16 gi|118431506|ref|NP_148020.2| - 0.15 11.5 0.2 0.24 10.9 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase adh_short PF00106.20 gi|118431506|ref|NP_148020.2| - 1.5 8.7 5.3 0.15 11.9 0.3 1.9 2 0 0 2 2 2 0 short chain dehydrogenase Mrr_N PF14338.1 gi|14601483|ref|NP_148021.1| - 1.1e-15 57.4 1.1 3.6e-11 42.9 0.3 2.5 2 0 0 2 2 2 2 Mrr N-terminal domain HSDR_N PF04313.9 gi|14601483|ref|NP_148021.1| - 5.7e-06 26.2 0.1 0.077 12.7 0.0 2.9 2 2 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|14601483|ref|NP_148021.1| - 0.00015 21.5 0.0 0.00034 20.3 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HARE-HTH PF05066.8 gi|14601483|ref|NP_148021.1| - 0.00039 20.7 0.1 0.00089 19.5 0.0 1.6 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain MarR PF01047.17 gi|14601483|ref|NP_148021.1| - 0.07 12.8 0.6 8.2 6.2 0.0 3.3 3 0 0 3 3 3 0 MarR family HTH_12 PF08461.5 gi|14601483|ref|NP_148021.1| - 0.098 12.3 0.7 13 5.5 0.1 2.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|14601483|ref|NP_148021.1| - 0.14 11.9 0.0 0.39 10.5 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Plasmid_stabil PF05016.9 gi|118431508|ref|YP_874901.1| - 4.6e-12 46.1 0.2 5.6e-12 45.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|118431508|ref|YP_874901.1| - 0.085 12.8 0.1 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) HTH_23 PF13384.1 gi|118431509|ref|YP_874902.1| - 0.0011 18.5 2.4 0.0015 18.1 1.7 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|118431509|ref|YP_874902.1| - 0.0038 17.0 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|118431509|ref|YP_874902.1| - 0.006 16.5 0.9 0.0091 15.9 0.6 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|118431509|ref|YP_874902.1| - 0.19 11.9 1.1 0.79 10.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|118431509|ref|YP_874902.1| - 0.23 11.7 2.5 0.33 11.1 1.6 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.22 gi|118431510|ref|NP_148023.2| - 9e-16 58.0 0.2 1.7e-15 57.1 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|118431510|ref|NP_148023.2| - 0.00011 21.8 0.0 0.00017 21.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|118431510|ref|NP_148023.2| - 0.00016 21.2 0.1 0.00036 20.1 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain zf-CDGSH PF09360.5 gi|14601485|ref|NP_148024.1| - 3.7e-16 58.6 0.8 4.9e-16 58.2 0.6 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type DUF2201_N PF13203.1 gi|14601486|ref|NP_148025.1| - 0.12 11.5 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain UPF0278 PF08745.6 gi|118431512|ref|NP_148027.2| - 1.3e-69 233.5 2.0 1.6e-69 233.2 1.4 1.0 1 0 0 1 1 1 1 UPF0278 family DNA_ligase_A_M PF01068.16 gi|118431513|ref|NP_148028.2| - 3.9e-14 52.4 0.0 7.2e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|118431513|ref|NP_148028.2| - 0.00081 19.2 0.0 0.0019 18.0 0.0 1.5 1 1 0 1 1 1 1 RNA ligase Myosin_N PF02736.14 gi|14601491|ref|NP_148030.1| - 0.096 12.3 1.1 0.87 9.3 0.1 2.3 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain UbiA PF01040.13 gi|14601492|ref|NP_148031.1| - 5.3e-30 104.5 28.0 6.2e-30 104.2 19.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.11 gi|118431515|ref|NP_148032.2| - 1.5e-131 438.6 0.0 1.7e-131 438.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DHQ_synthase PF01761.15 gi|118431517|ref|YP_874903.1| - 0.11 11.3 0.1 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase ABC_tran PF00005.22 gi|14601496|ref|NP_148035.1| - 7.8e-27 94.2 0.0 1.2e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|14601496|ref|NP_148035.1| - 4.2e-18 65.4 0.3 8.5e-18 64.4 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|14601496|ref|NP_148035.1| - 8.5e-09 35.7 0.1 3.4e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|14601496|ref|NP_148035.1| - 0.00061 19.8 0.0 0.0015 18.5 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|14601496|ref|NP_148035.1| - 0.0027 17.1 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|14601496|ref|NP_148035.1| - 0.0048 16.3 0.0 0.008 15.6 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|14601496|ref|NP_148035.1| - 0.0085 15.5 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|14601496|ref|NP_148035.1| - 0.014 15.5 0.9 0.068 13.3 0.7 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|14601496|ref|NP_148035.1| - 0.02 14.4 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|14601496|ref|NP_148035.1| - 0.022 14.9 0.1 0.049 13.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|14601496|ref|NP_148035.1| - 0.023 14.1 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|14601496|ref|NP_148035.1| - 0.041 13.3 0.1 0.11 11.9 0.1 1.7 1 1 1 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|14601496|ref|NP_148035.1| - 0.06 12.5 0.0 1.2 8.3 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.9 gi|14601496|ref|NP_148035.1| - 0.06 13.0 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|14601496|ref|NP_148035.1| - 0.077 12.7 0.3 0.12 12.0 0.2 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|14601496|ref|NP_148035.1| - 0.093 12.3 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|14601496|ref|NP_148035.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|14601496|ref|NP_148035.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|14601497|ref|NP_148036.1| - 9.3e-30 103.7 0.0 1.3e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|14601497|ref|NP_148036.1| - 1.5e-20 73.2 1.2 2.4e-20 72.6 0.8 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|14601497|ref|NP_148036.1| - 4.6e-10 39.9 0.1 3.7e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|14601497|ref|NP_148036.1| - 1e-06 28.1 0.3 6.2e-06 25.6 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|14601497|ref|NP_148036.1| - 0.0002 20.5 0.1 0.00084 18.4 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|14601497|ref|NP_148036.1| - 0.00043 19.7 0.8 0.0013 18.1 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|14601497|ref|NP_148036.1| - 0.00088 18.7 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|14601497|ref|NP_148036.1| - 0.0072 16.4 1.6 2.8 8.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|14601497|ref|NP_148036.1| - 0.02 14.3 0.1 0.13 11.6 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|14601497|ref|NP_148036.1| - 0.048 13.6 0.6 0.13 12.2 0.1 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|14601497|ref|NP_148036.1| - 0.065 12.4 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|14601497|ref|NP_148036.1| - 0.087 13.1 0.6 1.8 8.8 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|14601497|ref|NP_148036.1| - 0.13 12.1 0.1 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|14601497|ref|NP_148036.1| - 0.15 11.5 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_13 PF13166.1 gi|14601497|ref|NP_148036.1| - 0.24 9.8 0.8 0.92 7.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|118431518|ref|NP_148037.2| - 2.6e-22 79.2 18.0 1.1e-21 77.2 11.4 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|14601499|ref|NP_148038.1| - 1.7e-39 135.2 17.1 1.7e-39 135.2 11.9 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component FtsL PF04999.8 gi|14601499|ref|NP_148038.1| - 0.056 13.1 1.9 0.61 9.8 0.3 2.6 2 0 0 2 2 2 0 Cell division protein FtsL AAA_12 PF13087.1 gi|14601499|ref|NP_148038.1| - 0.16 11.2 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Spore_YhaL PF14147.1 gi|14601499|ref|NP_148038.1| - 1.2 8.6 5.7 16 5.0 1.4 2.7 2 0 0 2 2 2 0 Sporulation protein YhaL SBP_bac_5 PF00496.17 gi|118431519|ref|NP_148039.2| - 1.6e-15 56.8 0.1 5.1e-09 35.4 0.0 3.1 2 2 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Kelch_1 PF01344.20 gi|118431519|ref|NP_148039.2| - 0.028 13.9 0.2 0.2 11.2 0.0 2.5 3 0 0 3 3 3 0 Kelch motif CBS PF00571.23 gi|14601501|ref|NP_148040.1| - 6.7e-06 25.7 0.1 0.013 15.2 0.0 2.3 2 0 0 2 2 2 2 CBS domain PALP PF00291.20 gi|14601502|ref|NP_148041.1| - 1e-47 162.8 0.0 1.3e-47 162.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acyl-CoA_dh_1 PF00441.19 gi|118431520|ref|YP_874904.1| - 1.7e-08 34.6 0.0 1.9e-08 34.5 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|118431520|ref|YP_874904.1| - 6.6e-05 23.1 0.0 6.6e-05 23.1 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|118431521|ref|YP_874905.1| - 0.003 17.6 0.6 0.0032 17.5 0.4 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PIN PF01850.16 gi|14601503|ref|NP_148042.1| - 4.6e-11 43.1 0.1 5.9e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|14601503|ref|NP_148042.1| - 0.0024 18.5 0.1 0.0034 18.0 0.0 1.2 1 0 0 1 1 1 1 PIN domain PPDK_N PF01326.14 gi|118431522|ref|YP_874906.1| - 1.7e-26 93.0 0.6 2e-26 92.8 0.4 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FAM195 PF14799.1 gi|118431522|ref|YP_874906.1| - 0.067 13.0 0.1 0.067 13.0 0.0 1.1 1 0 0 1 1 1 0 FAM195 family PPDK_N PF01326.14 gi|118431523|ref|YP_874907.1| - 0.00025 20.1 0.0 0.00027 20.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Acylphosphatase PF00708.13 gi|118431524|ref|NP_148044.2| - 6e-26 90.3 0.0 7.1e-26 90.1 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase tRNA-synt_1e PF01406.14 gi|118431525|ref|NP_148045.2| - 9.5e-123 409.1 0.0 1.2e-122 408.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|118431525|ref|NP_148045.2| - 5.1e-19 68.2 0.3 1.7e-11 43.4 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|118431525|ref|NP_148045.2| - 1.6e-07 29.7 0.0 0.00037 18.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|118431525|ref|NP_148045.2| - 0.0012 17.5 0.1 0.038 12.6 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain DALR_2 PF09190.6 gi|118431525|ref|NP_148045.2| - 0.0026 17.9 0.0 0.025 14.8 0.0 2.5 3 0 0 3 3 3 1 DALR domain tRNA-synt_1f PF01921.13 gi|118431525|ref|NP_148045.2| - 0.0073 15.0 0.0 0.24 10.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|118431525|ref|NP_148045.2| - 0.15 10.8 0.1 0.31 9.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (R) ThiF PF00899.16 gi|14601507|ref|NP_148046.1| - 7.4e-44 148.8 0.0 1.2e-43 148.2 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|14601507|ref|NP_148046.1| - 3.2e-18 65.1 0.2 4.7e-18 64.5 0.2 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|14601507|ref|NP_148046.1| - 0.00022 21.3 0.1 0.0005 20.1 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|14601507|ref|NP_148046.1| - 0.0034 17.3 0.1 0.0065 16.4 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase CoA_transf_3 PF02515.12 gi|14601507|ref|NP_148046.1| - 0.0069 15.6 1.2 0.0079 15.4 0.0 1.6 2 0 0 2 2 2 1 CoA-transferase family III ApbA PF02558.11 gi|14601507|ref|NP_148046.1| - 0.016 14.6 0.1 0.025 14.0 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA KR PF08659.5 gi|14601507|ref|NP_148046.1| - 0.024 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 KR domain 2-Hacid_dh_C PF02826.14 gi|14601507|ref|NP_148046.1| - 0.037 13.1 0.0 0.069 12.3 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|14601507|ref|NP_148046.1| - 0.069 12.5 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF3147 PF11345.3 gi|118431526|ref|YP_874908.1| - 0.24 11.4 4.3 0.36 10.8 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3147) AdoMet_Synthase PF01941.14 gi|14601508|ref|NP_148047.1| - 1.6e-174 580.0 3.3 1.9e-174 579.8 2.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) MCPsignal PF00015.16 gi|14601508|ref|NP_148047.1| - 0.05 13.1 0.6 0.081 12.4 0.4 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF460 PF04312.8 gi|118431527|ref|NP_148048.2| - 2.3e-45 153.5 0.0 5.8e-45 152.2 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Mur_ligase PF01225.20 gi|118431527|ref|NP_148048.2| - 2.6e-05 24.2 0.0 6.8e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, catalytic domain ATG16 PF08614.6 gi|118431527|ref|NP_148048.2| - 0.00027 20.8 4.6 0.00054 19.8 3.2 1.6 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) GAS PF13851.1 gi|118431527|ref|NP_148048.2| - 0.00051 19.3 6.7 0.00064 18.9 3.5 1.9 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding Med9 PF07544.8 gi|118431527|ref|NP_148048.2| - 0.00099 18.8 5.0 0.0028 17.3 3.4 1.9 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 EzrA PF06160.7 gi|118431527|ref|NP_148048.2| - 0.0016 16.6 4.7 0.0016 16.6 3.3 1.4 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA FlaC_arch PF05377.6 gi|118431527|ref|NP_148048.2| - 0.0047 16.7 9.7 0.061 13.2 0.2 3.1 3 0 0 3 3 3 2 Flagella accessory protein C (FlaC) Sec2p PF06428.6 gi|118431527|ref|NP_148048.2| - 0.0073 16.1 6.9 0.035 13.9 0.4 2.5 2 0 0 2 2 2 1 GDP/GTP exchange factor Sec2p Tropomyosin_1 PF12718.2 gi|118431527|ref|NP_148048.2| - 0.0089 15.8 11.3 0.0089 15.8 7.8 1.9 1 1 1 2 2 2 1 Tropomyosin like DUF342 PF03961.8 gi|118431527|ref|NP_148048.2| - 0.009 14.4 2.1 0.014 13.8 1.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) CCDC144C PF14915.1 gi|118431527|ref|NP_148048.2| - 0.0099 14.8 5.5 0.016 14.1 3.8 1.2 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region ADIP PF11559.3 gi|118431527|ref|NP_148048.2| - 0.014 15.2 7.1 1.1 9.0 1.2 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DivIVA PF05103.8 gi|118431527|ref|NP_148048.2| - 0.026 14.5 4.5 0.065 13.2 3.1 1.6 1 0 0 1 1 1 0 DivIVA protein DivIC PF04977.10 gi|118431527|ref|NP_148048.2| - 0.029 13.8 7.0 0.021 14.3 2.8 2.2 1 1 1 2 2 2 0 Septum formation initiator IncA PF04156.9 gi|118431527|ref|NP_148048.2| - 0.03 13.9 7.5 0.067 12.7 5.2 1.6 1 0 0 1 1 1 0 IncA protein CCDC155 PF14662.1 gi|118431527|ref|NP_148048.2| - 0.035 13.7 9.3 0.067 12.7 6.4 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 V_ATPase_I PF01496.14 gi|118431527|ref|NP_148048.2| - 0.11 10.3 3.1 0.16 9.7 2.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Reo_sigmaC PF04582.7 gi|118431527|ref|NP_148048.2| - 0.13 11.4 0.3 1.2 8.2 0.0 2.3 2 1 0 2 2 2 0 Reovirus sigma C capsid protein FH2 PF02181.18 gi|118431527|ref|NP_148048.2| - 0.15 10.9 0.9 0.21 10.4 0.7 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain Cortex-I_coil PF09304.5 gi|118431527|ref|NP_148048.2| - 0.18 11.8 14.6 0.54 10.3 1.9 3.0 2 1 1 3 3 3 0 Cortexillin I, coiled coil End3 PF12761.2 gi|118431527|ref|NP_148048.2| - 0.21 11.2 3.1 0.6 9.7 2.1 1.7 2 0 0 2 2 1 0 Actin cytoskeleton-regulatory complex protein END3 APG6 PF04111.7 gi|118431527|ref|NP_148048.2| - 0.24 10.4 5.3 0.42 9.6 3.7 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 TMF_TATA_bd PF12325.3 gi|118431527|ref|NP_148048.2| - 0.29 10.8 14.0 0.88 9.3 9.7 1.8 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding ALIX_LYPXL_bnd PF13949.1 gi|118431527|ref|NP_148048.2| - 0.31 9.9 12.5 0.042 12.8 5.7 1.7 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV CENP-F_leu_zip PF10473.4 gi|118431527|ref|NP_148048.2| - 0.32 10.8 22.1 0.51 10.2 4.1 2.9 1 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.4 gi|118431527|ref|NP_148048.2| - 0.41 9.5 10.0 0.17 10.8 1.3 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Mnd1 PF03962.10 gi|118431527|ref|NP_148048.2| - 0.51 9.9 5.5 1.1 8.9 3.8 1.4 1 0 0 1 1 1 0 Mnd1 family DUF1664 PF07889.7 gi|118431527|ref|NP_148048.2| - 0.88 9.3 3.0 2.2 8.1 0.4 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) PspA_IM30 PF04012.7 gi|118431527|ref|NP_148048.2| - 0.97 8.7 20.4 0.093 12.0 6.0 2.9 2 1 1 3 3 2 0 PspA/IM30 family Occludin_ELL PF07303.8 gi|118431527|ref|NP_148048.2| - 1 10.1 6.3 8 7.2 1.7 3.0 3 0 0 3 3 3 0 Occludin homology domain Tnp_P_element PF12017.3 gi|118431527|ref|NP_148048.2| - 1.1 8.4 5.8 0.46 9.6 1.2 2.0 1 1 1 2 2 2 0 Transposase protein HALZ PF02183.13 gi|118431527|ref|NP_148048.2| - 1.1 8.9 6.9 0.55 9.9 1.7 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF972 PF06156.8 gi|118431527|ref|NP_148048.2| - 1.7 9.0 8.3 2.8 8.3 1.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TBPIP PF07106.8 gi|118431527|ref|NP_148048.2| - 2.1 7.8 7.2 11 5.5 4.5 2.3 2 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DASH_Spc34 PF08657.5 gi|118431527|ref|NP_148048.2| - 2.4 7.7 6.7 4.6 6.8 4.6 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 Laminin_II PF06009.7 gi|118431527|ref|NP_148048.2| - 2.4 7.8 6.7 1.8 8.2 0.7 2.8 3 0 0 3 3 2 0 Laminin Domain II Fmp27_WPPW PF10359.4 gi|118431527|ref|NP_148048.2| - 3.2 6.0 4.7 4.8 5.4 3.3 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Adeno_PIX PF03955.9 gi|118431527|ref|NP_148048.2| - 3.3 8.2 6.6 1.2 9.7 0.6 3.0 2 1 1 3 3 2 0 Adenovirus hexon-associated protein (IX) Spc7 PF08317.6 gi|118431527|ref|NP_148048.2| - 5.2 5.6 8.2 11 4.5 5.2 1.7 1 1 1 2 2 2 0 Spc7 kinetochore protein SlyX PF04102.7 gi|118431527|ref|NP_148048.2| - 5.3 7.5 10.3 3.9 7.9 1.0 3.4 3 0 0 3 3 3 0 SlyX OmpH PF03938.9 gi|118431527|ref|NP_148048.2| - 6 6.7 6.3 9.2 6.1 4.0 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) RIO1 PF01163.17 gi|118431528|ref|NP_148049.2| - 1.1e-53 181.3 0.0 1.4e-53 181.0 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|118431528|ref|NP_148049.2| - 8.8e-22 76.9 0.1 4.7e-21 74.6 0.0 2.1 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.18 gi|118431528|ref|NP_148049.2| - 4.7e-08 33.0 3.6 0.0013 18.4 0.0 3.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|118431528|ref|NP_148049.2| - 0.00058 18.9 0.0 0.012 14.6 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|118431528|ref|NP_148049.2| - 0.0017 17.5 0.0 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain MarR_2 PF12802.2 gi|118431528|ref|NP_148049.2| - 0.0072 15.9 0.6 0.033 13.8 0.4 2.2 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|118431528|ref|NP_148049.2| - 0.0092 15.6 0.6 4.5 7.0 0.1 3.5 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Fructosamin_kin PF03881.9 gi|118431528|ref|NP_148049.2| - 0.044 12.7 0.0 0.064 12.2 0.0 1.2 1 0 0 1 1 1 0 Fructosamine kinase DUF1203 PF06718.6 gi|118431528|ref|NP_148049.2| - 0.061 13.1 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1203) HTH_20 PF12840.2 gi|118431529|ref|YP_874909.1| - 9.9e-11 41.2 0.0 1.3e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|118431529|ref|YP_874909.1| - 1.3e-10 40.7 0.1 2e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|118431529|ref|YP_874909.1| - 1.4e-06 27.6 0.5 2e-06 27.0 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|118431529|ref|YP_874909.1| - 1.5e-05 24.5 0.1 1.8e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|118431529|ref|YP_874909.1| - 2.8e-05 23.7 0.0 3.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|118431529|ref|YP_874909.1| - 4.7e-05 23.6 0.0 6.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|118431529|ref|YP_874909.1| - 5.3e-05 22.8 0.1 7.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|118431529|ref|YP_874909.1| - 0.00021 21.2 0.0 0.00026 20.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|118431529|ref|YP_874909.1| - 0.0012 18.4 0.2 0.0024 17.4 0.1 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|118431529|ref|YP_874909.1| - 0.0047 16.8 0.0 0.007 16.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain ArsR PF09824.4 gi|118431529|ref|YP_874909.1| - 0.006 15.9 0.0 0.0072 15.6 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_IclR PF09339.5 gi|118431529|ref|YP_874909.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PqqD PF05402.7 gi|118431529|ref|YP_874909.1| - 0.02 14.8 0.0 0.063 13.3 0.0 1.8 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) PAX PF00292.13 gi|118431529|ref|YP_874909.1| - 0.024 14.3 0.1 0.028 14.1 0.1 1.1 1 0 0 1 1 1 0 'Paired box' domain Sigma70_r4 PF04545.11 gi|118431529|ref|YP_874909.1| - 0.039 13.2 0.0 0.08 12.2 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|118431529|ref|YP_874909.1| - 0.056 13.4 0.0 0.086 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|118431529|ref|YP_874909.1| - 0.064 13.0 0.1 0.17 11.6 0.1 1.8 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|118431529|ref|YP_874909.1| - 0.094 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein CTP_synth_N PF06418.9 gi|14601511|ref|NP_148051.1| - 4.6e-124 412.9 0.0 6.3e-124 412.5 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|14601511|ref|NP_148051.1| - 3.2e-44 150.6 0.0 5.1e-44 150.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|14601511|ref|NP_148051.1| - 8.5e-14 51.5 0.0 1.5e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|14601511|ref|NP_148051.1| - 6.1e-08 32.2 0.0 9.9e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrbH PF07283.6 gi|14601511|ref|NP_148051.1| - 0.11 12.3 0.1 0.27 11.1 0.0 1.6 2 0 0 2 2 2 0 Conjugal transfer protein TrbH Hydrolase_6 PF13344.1 gi|118431530|ref|NP_148052.2| - 1.2e-22 79.6 0.0 1.6e-21 76.0 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|118431530|ref|NP_148052.2| - 3.6e-10 39.3 0.0 7.6e-10 38.3 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|118431530|ref|NP_148052.2| - 0.00067 20.1 0.1 0.0033 17.8 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase FbpA PF05833.6 gi|14601515|ref|NP_148055.1| - 6.8e-38 130.3 0.0 9.3e-38 129.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|14601515|ref|NP_148055.1| - 3.2e-25 87.8 0.0 8.6e-25 86.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF814) PhageMin_Tail PF10145.4 gi|14601515|ref|NP_148055.1| - 0.12 12.0 0.9 5.4 6.6 0.0 2.4 2 0 0 2 2 2 0 Phage-related minor tail protein OmpH PF03938.9 gi|14601515|ref|NP_148055.1| - 0.27 11.1 2.2 0.56 10.1 1.5 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HAUS-augmin3 PF14932.1 gi|14601515|ref|NP_148055.1| - 0.51 9.4 1.4 1 8.5 0.1 1.9 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 FUSC PF04632.7 gi|14601515|ref|NP_148055.1| - 1.4 7.2 5.2 2.4 6.4 3.6 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3391 PF11871.3 gi|14601515|ref|NP_148055.1| - 1.7 8.8 5.0 14 5.9 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) DUF773 PF05600.7 gi|14601515|ref|NP_148055.1| - 3 6.4 3.8 0.62 8.7 0.4 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF773) Glyco_trans_1_2 PF13524.1 gi|14601515|ref|NP_148055.1| - 4.2 7.7 8.3 5.9 7.2 0.5 3.6 3 0 0 3 3 3 0 Glycosyl transferases group 1 DUF59 PF01883.14 gi|14601516|ref|NP_148056.1| - 0.094 12.7 0.0 1 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF59 Cation_efflux PF01545.16 gi|14601517|ref|NP_148057.1| - 2.8e-28 98.8 9.0 3.6e-28 98.4 6.2 1.0 1 0 0 1 1 1 1 Cation efflux family PhosphMutase PF10143.4 gi|118431534|ref|NP_148058.2| - 9.7e-55 184.8 0.0 1.4e-54 184.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|118431534|ref|NP_148058.2| - 2.9e-29 102.2 0.0 3.7e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|118431534|ref|NP_148058.2| - 0.058 12.7 0.0 0.089 12.0 0.0 1.3 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|118431534|ref|NP_148058.2| - 0.069 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 PglZ domain Aconitase PF00330.15 gi|118431535|ref|NP_148060.2| - 2.2e-143 478.1 0.0 2.6e-143 477.8 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|118431535|ref|NP_148060.2| - 2.7e-37 127.8 0.0 4.2e-37 127.1 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain NTS_2 PF15448.1 gi|118431535|ref|NP_148060.2| - 0.053 13.8 0.0 0.29 11.4 0.0 2.3 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein Pyr_redox_2 PF07992.9 gi|118431536|ref|NP_148061.2| - 2.1e-07 31.0 0.2 4.8e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|118431536|ref|NP_148061.2| - 6.1e-07 29.3 1.0 9.8e-06 25.5 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|118431536|ref|NP_148061.2| - 1.5e-06 27.3 0.0 0.00055 18.9 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|118431536|ref|NP_148061.2| - 4.1e-06 25.9 1.7 0.0016 17.4 0.2 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|118431536|ref|NP_148061.2| - 2.2e-05 23.7 3.6 0.018 14.0 0.3 2.8 2 1 0 3 3 3 2 FAD binding domain Pyr_redox PF00070.22 gi|118431536|ref|NP_148061.2| - 0.00024 21.4 0.9 0.0015 18.9 0.3 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|118431536|ref|NP_148061.2| - 0.00034 19.1 0.3 0.00094 17.7 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|118431536|ref|NP_148061.2| - 0.0046 15.8 0.1 0.0076 15.1 0.1 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|118431536|ref|NP_148061.2| - 0.0066 15.3 2.1 0.0083 15.0 0.2 2.1 2 1 1 3 3 3 1 FAD binding domain Amino_oxidase PF01593.19 gi|118431536|ref|NP_148061.2| - 0.0078 15.3 0.1 0.52 9.3 0.1 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Thi4 PF01946.12 gi|118431536|ref|NP_148061.2| - 0.032 13.3 0.3 0.12 11.4 0.1 1.9 1 1 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|118431536|ref|NP_148061.2| - 0.14 11.9 0.4 0.79 9.4 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|118431536|ref|NP_148061.2| - 0.14 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|118431536|ref|NP_148061.2| - 0.19 11.3 0.2 0.31 10.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain COX1 PF00115.15 gi|14601522|ref|NP_148062.1| - 9.9e-102 340.8 51.8 1.4e-101 340.3 35.9 1.2 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I XhlA PF10779.4 gi|14601522|ref|NP_148062.1| - 1.1 9.2 3.5 2 8.3 0.0 2.7 2 0 0 2 2 2 0 Haemolysin XhlA DUF4117 PF13491.1 gi|14601523|ref|NP_148063.1| - 0.27 10.6 6.3 0.37 10.2 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) DUF2231 PF09990.4 gi|14601523|ref|NP_148063.1| - 0.34 11.2 4.5 0.65 10.3 3.1 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2231) DUF4064 PF13273.1 gi|14601523|ref|NP_148063.1| - 0.87 9.7 13.6 17 5.5 9.4 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF4190 PF13828.1 gi|14601523|ref|NP_148063.1| - 2.3 7.8 18.3 3.3 7.3 1.7 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4190) DUF308 PF03729.8 gi|14601523|ref|NP_148063.1| - 2.8 7.9 17.7 2.5 8.1 0.3 3.1 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) SdpI PF13630.1 gi|14601523|ref|NP_148063.1| - 9 6.0 10.5 2.1 8.1 1.8 2.3 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF1122 PF06557.6 gi|14601524|ref|NP_148064.1| - 1.2e-72 242.5 0.0 1.5e-72 242.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) SUI1 PF01253.17 gi|14601525|ref|NP_148065.1| - 1.6e-24 85.5 0.9 1.8e-24 85.2 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|14601525|ref|NP_148065.1| - 0.015 15.4 0.3 0.024 14.8 0.1 1.3 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DNA_RNApol_7kD PF03604.8 gi|118431537|ref|NP_148066.2| - 0.0026 17.1 4.3 0.045 13.2 3.0 2.1 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-CSL PF05207.8 gi|118431537|ref|NP_148066.2| - 0.003 17.0 1.9 0.0076 15.7 1.3 1.6 1 1 0 1 1 1 1 CSL zinc finger A2L_zn_ribbon PF08792.5 gi|118431537|ref|NP_148066.2| - 0.027 13.9 1.4 1.5 8.3 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|118431537|ref|NP_148066.2| - 0.033 13.8 3.9 0.054 13.1 1.0 2.4 2 1 1 3 3 3 0 zinc-ribbon domain C1_3 PF07649.7 gi|118431537|ref|NP_148066.2| - 0.034 14.1 1.7 3.3 7.8 0.1 2.2 1 1 1 2 2 2 0 C1-like domain zinc_ribbon_5 PF13719.1 gi|118431537|ref|NP_148066.2| - 0.035 13.6 3.4 0.053 13.1 0.7 2.3 2 1 1 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|118431537|ref|NP_148066.2| - 0.06 12.9 0.7 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3268 PF11672.3 gi|118431537|ref|NP_148066.2| - 0.072 13.1 0.3 1.7 8.7 0.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3268) zf-NADH-PPase PF09297.6 gi|118431537|ref|NP_148066.2| - 0.086 12.3 0.7 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain C1_2 PF03107.11 gi|118431537|ref|NP_148066.2| - 0.1 12.7 0.4 3.5 7.8 0.0 2.1 2 0 0 2 2 2 0 C1 domain DUF4428 PF14471.1 gi|118431537|ref|NP_148066.2| - 0.16 11.7 1.1 0.51 10.1 0.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) RRN7 PF11781.3 gi|118431537|ref|NP_148066.2| - 0.2 11.2 4.7 3.2 7.3 1.0 2.4 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Ribosomal_S27e PF01667.12 gi|118431537|ref|NP_148066.2| - 0.37 10.3 2.6 1.3 8.6 1.8 1.8 1 1 0 1 1 1 0 Ribosomal protein S27 zf-HIT PF04438.11 gi|118431537|ref|NP_148066.2| - 0.75 9.4 3.2 11 5.7 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.2 gi|118431537|ref|NP_148066.2| - 1 9.2 3.6 11 5.9 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain SBP_bac_1 PF01547.20 gi|118431538|ref|NP_148067.2| - 1.3e-39 136.8 2.4 1.8e-39 136.3 1.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|118431538|ref|NP_148067.2| - 4.6e-36 125.0 0.0 6.4e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|118431538|ref|NP_148067.2| - 5.9e-09 35.8 0.0 7.5e-08 32.2 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|118431538|ref|NP_148067.2| - 1.7e-07 30.8 0.1 1.8e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SidE PF12252.3 gi|118431538|ref|NP_148067.2| - 0.35 8.1 0.0 0.44 7.7 0.0 1.0 1 0 0 1 1 1 0 Dot/Icm substrate protein BPD_transp_1 PF00528.17 gi|14601528|ref|NP_148068.1| - 4.1e-05 23.1 18.4 4.1e-05 23.1 12.7 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|14601529|ref|NP_148069.1| - 3.9e-14 52.5 22.7 3.9e-14 52.5 15.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|118431539|ref|NP_148070.2| - 3.6e-33 114.7 0.0 6.9e-33 113.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|118431539|ref|NP_148070.2| - 7.6e-11 41.8 0.1 2.3e-10 40.2 0.1 1.9 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|118431539|ref|NP_148070.2| - 5.6e-09 35.9 0.6 1.7e-07 31.2 0.1 3.2 2 1 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|118431539|ref|NP_148070.2| - 7.5e-09 35.9 0.0 3.6e-05 23.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|118431539|ref|NP_148070.2| - 0.0005 20.0 0.1 0.0013 18.7 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|118431539|ref|NP_148070.2| - 0.0014 18.8 0.0 0.016 15.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|118431539|ref|NP_148070.2| - 0.0024 18.0 0.9 0.025 14.7 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|118431539|ref|NP_148070.2| - 0.0086 15.1 0.0 0.046 12.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|118431539|ref|NP_148070.2| - 0.011 14.4 0.0 0.016 13.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|118431539|ref|NP_148070.2| - 0.016 14.9 0.8 0.036 13.8 0.3 1.8 1 1 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|118431539|ref|NP_148070.2| - 0.021 14.7 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|118431539|ref|NP_148070.2| - 0.025 14.4 0.0 0.068 13.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.1 gi|118431539|ref|NP_148070.2| - 0.037 13.5 0.0 0.086 12.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|118431539|ref|NP_148070.2| - 0.041 13.5 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|118431539|ref|NP_148070.2| - 0.042 13.0 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|118431539|ref|NP_148070.2| - 0.058 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|118431539|ref|NP_148070.2| - 0.075 12.4 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|118431539|ref|NP_148070.2| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|118431539|ref|NP_148070.2| - 0.17 12.6 0.3 0.49 11.2 0.2 1.9 1 1 1 2 2 1 0 AAA domain Arginase PF00491.16 gi|118431540|ref|NP_148071.2| - 5.1e-76 255.6 0.0 6.3e-76 255.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family tRNA-synt_2b PF00587.20 gi|14601532|ref|NP_148072.1| - 1.6e-51 174.2 0.0 2.2e-51 173.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|14601532|ref|NP_148072.1| - 1e-24 86.2 0.1 2e-24 85.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain zf-C2HC_2 PF13913.1 gi|14601532|ref|NP_148072.1| - 0.089 12.4 0.1 0.089 12.4 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.9 gi|14601532|ref|NP_148072.1| - 0.12 11.9 0.1 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif DNA_pol3_chi PF04364.8 gi|14601532|ref|NP_148072.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III chi subunit, HolC zinc_ribbon_5 PF13719.1 gi|14601532|ref|NP_148072.1| - 0.48 10.0 3.2 2.7 7.6 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|14601532|ref|NP_148072.1| - 1.2 8.8 3.7 6 6.6 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Molydop_binding PF01568.16 gi|118431541|ref|YP_874911.1| - 4.9e-06 26.3 0.0 0.011 15.5 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain Flg_hook PF02120.11 gi|118431542|ref|NP_148073.2| - 0.11 12.2 0.2 0.83 9.3 0.0 2.3 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK tRNA_int_endo PF01974.12 gi|118431543|ref|NP_148074.2| - 1.8e-27 94.9 0.0 2.5e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|118431543|ref|NP_148074.2| - 9.3e-20 69.9 0.1 1.3e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Flavoprotein PF02441.14 gi|14601535|ref|NP_148075.1| - 7.6e-22 77.3 0.0 1.1e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Hairy_orange PF07527.8 gi|14601535|ref|NP_148075.1| - 0.032 13.9 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Hairy Orange Macro PF01661.16 gi|118431544|ref|NP_148076.2| - 1.3e-25 89.6 0.0 1.8e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 Macro domain TetR_N PF00440.18 gi|118431544|ref|NP_148076.2| - 0.018 14.6 1.8 1.3 8.7 0.2 2.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, tetR family MobB PF03205.9 gi|118431545|ref|NP_148077.2| - 2.1e-06 27.5 0.0 7.2e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|118431545|ref|NP_148077.2| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain PduV-EutP PF10662.4 gi|118431545|ref|NP_148077.2| - 0.055 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Radical_SAM PF04055.16 gi|14601538|ref|NP_148078.1| - 2.7e-23 82.9 0.0 5e-23 82.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|14601538|ref|NP_148078.1| - 7.7e-06 26.0 0.0 1.2e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|14601538|ref|NP_148078.1| - 9.9e-06 25.5 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|14601538|ref|NP_148078.1| - 3.2e-05 24.1 0.0 6.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AP_endonuc_2 PF01261.19 gi|14601538|ref|NP_148078.1| - 0.099 11.9 0.1 0.24 10.6 0.0 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|14601539|ref|NP_148079.1| - 2.2e-19 70.2 0.0 3.6e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|14601539|ref|NP_148079.1| - 3.1e-05 23.9 0.0 5.7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|14601539|ref|NP_148079.1| - 6.4e-05 23.0 0.0 0.00012 22.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Aldolase_II PF00596.16 gi|118431546|ref|NP_148080.2| - 3.4e-39 134.3 0.4 3.8e-39 134.2 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Aldo_ket_red PF00248.16 gi|14601541|ref|NP_148081.1| - 2.1e-55 187.5 0.0 2.4e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Abhydrolase_8 PF06259.7 gi|14601541|ref|NP_148081.1| - 0.016 14.6 0.2 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase DsrH PF04077.7 gi|14601541|ref|NP_148081.1| - 0.045 13.4 0.2 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 DsrH like protein CoA_binding_2 PF13380.1 gi|118431547|ref|NP_148082.2| - 4.2e-35 120.3 0.4 5e-35 120.1 0.3 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|118431547|ref|NP_148082.2| - 7.7e-09 35.9 0.0 2.9e-08 34.1 0.0 1.8 1 1 1 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|118431547|ref|NP_148082.2| - 0.065 13.7 0.2 2 8.9 0.1 2.3 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PTH2 PF01981.11 gi|14601543|ref|NP_148083.1| - 2.5e-41 139.9 0.0 2.8e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2396 PF09654.5 gi|14601543|ref|NP_148083.1| - 0.041 13.8 0.0 0.049 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) PyrI PF01948.13 gi|118431548|ref|NP_148084.2| - 1.1e-29 102.3 0.0 1.5e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|118431548|ref|NP_148084.2| - 1.4e-16 59.5 0.2 2.2e-16 59.0 0.1 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF3125 PF11323.3 gi|118431548|ref|NP_148084.2| - 0.026 14.2 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3125) Foamy_virus_ENV PF03408.9 gi|118431548|ref|NP_148084.2| - 0.071 10.6 0.0 0.11 10.0 0.0 1.2 1 0 0 1 1 1 0 Foamy virus envelope protein OTCace_N PF02729.16 gi|118431549|ref|NP_148085.2| - 1.3e-41 141.5 0.0 1.8e-41 141.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|118431549|ref|NP_148085.2| - 2.8e-32 111.7 0.0 4.5e-32 111.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HD PF01966.17 gi|14601546|ref|NP_148086.1| - 6.7e-09 35.8 0.6 9.8e-09 35.2 0.1 1.6 2 0 0 2 2 2 1 HD domain CutA1 PF03091.10 gi|14601547|ref|NP_148087.1| - 1.9e-40 136.6 0.1 2.1e-40 136.5 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Pyr_redox_2 PF07992.9 gi|118431550|ref|NP_148088.2| - 2e-36 125.7 8.4 1.8e-22 80.1 1.8 4.1 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|118431550|ref|NP_148088.2| - 7.1e-33 112.9 0.3 1.6e-32 111.7 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|118431550|ref|NP_148088.2| - 2.2e-24 85.6 4.6 5.2e-22 78.0 0.7 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|118431550|ref|NP_148088.2| - 7.4e-12 45.7 2.5 4.8e-07 30.0 0.3 3.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|118431550|ref|NP_148088.2| - 1.6e-10 40.4 1.2 6e-06 25.3 0.4 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|118431550|ref|NP_148088.2| - 9e-10 38.1 10.6 7.3e-09 35.1 0.7 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase DAO PF01266.19 gi|118431550|ref|NP_148088.2| - 2.9e-09 36.3 15.7 5.7e-05 22.1 0.3 3.9 3 2 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|118431550|ref|NP_148088.2| - 1.9e-07 30.9 0.9 0.0036 17.2 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|118431550|ref|NP_148088.2| - 4.6e-07 28.6 9.0 0.0022 16.5 0.3 3.3 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|118431550|ref|NP_148088.2| - 2.8e-06 26.4 7.5 1.1e-05 24.5 0.2 2.9 3 0 0 3 3 3 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|118431550|ref|NP_148088.2| - 3.6e-05 23.2 2.3 0.00025 20.4 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|118431550|ref|NP_148088.2| - 0.00015 21.4 3.0 0.0048 16.5 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|118431550|ref|NP_148088.2| - 0.00097 18.2 4.3 0.0086 15.1 0.0 2.9 3 0 0 3 3 3 1 Thi4 family NAD_binding_7 PF13241.1 gi|118431550|ref|NP_148088.2| - 0.0015 18.7 0.8 0.41 10.9 0.1 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|118431550|ref|NP_148088.2| - 0.0016 17.4 7.8 0.062 12.2 0.1 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|118431550|ref|NP_148088.2| - 0.0022 17.1 5.9 0.052 12.5 0.6 2.6 2 1 1 3 3 3 2 FAD binding domain XdhC_C PF13478.1 gi|118431550|ref|NP_148088.2| - 0.012 15.8 0.1 0.16 12.2 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|118431550|ref|NP_148088.2| - 0.019 14.5 1.2 0.032 13.8 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|118431550|ref|NP_148088.2| - 0.02 13.5 2.4 0.37 9.3 0.1 2.3 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.16 gi|118431550|ref|NP_148088.2| - 0.063 13.1 0.1 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 ThiF family NAD_binding_9 PF13454.1 gi|118431550|ref|NP_148088.2| - 2.2 8.0 8.6 1.5 8.5 0.2 3.4 3 1 1 4 4 4 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.18 gi|14601549|ref|NP_148089.1| - 2.7e-84 282.0 0.0 3.3e-84 281.7 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|14601549|ref|NP_148089.1| - 1.6e-19 69.2 0.6 2.8e-19 68.5 0.4 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|14601549|ref|NP_148089.1| - 3.2e-13 49.0 2.2 3.2e-13 49.0 1.6 3.3 4 0 0 4 4 4 1 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|14601549|ref|NP_148089.1| - 2.6e-09 36.6 3.0 2.8e-06 26.8 0.1 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|14601549|ref|NP_148089.1| - 0.00012 21.4 1.0 0.026 13.8 0.1 2.3 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|14601549|ref|NP_148089.1| - 0.0014 18.8 0.5 0.039 14.3 0.0 2.5 1 1 1 2 2 2 1 HlyD family secretion protein DUF1048 PF06304.6 gi|14601549|ref|NP_148089.1| - 0.12 12.7 0.1 0.78 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1048) Transket_pyr PF02779.19 gi|14601550|ref|NP_148090.1| - 1.4e-50 171.2 0.0 2.2e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|14601550|ref|NP_148090.1| - 4.1e-40 136.5 0.0 2.7e-39 133.9 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|118431551|ref|NP_148091.2| - 3.2e-84 282.1 0.0 3.8e-84 281.9 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|118431551|ref|NP_148091.2| - 0.0026 16.7 0.0 0.0068 15.3 0.0 1.6 1 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|118431551|ref|NP_148091.2| - 0.02 14.4 0.8 0.41 10.2 0.3 2.6 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|118431551|ref|NP_148091.2| - 0.05 12.3 0.0 0.11 11.3 0.0 1.4 2 0 0 2 2 2 0 Transketolase, thiamine diphosphate binding domain Acyl-CoA_dh_1 PF00441.19 gi|118431552|ref|NP_148093.2| - 9.9e-45 152.3 0.8 1.4e-44 151.7 0.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|118431552|ref|NP_148093.2| - 2.2e-31 108.7 0.7 6.8e-31 107.1 0.0 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|118431552|ref|NP_148093.2| - 2.7e-18 65.2 0.1 5.2e-18 64.2 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|118431552|ref|NP_148093.2| - 5.7e-15 55.7 0.1 1.2e-14 54.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|118431552|ref|NP_148093.2| - 0.065 12.6 0.0 0.83 8.9 0.0 2.3 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal ArgK PF03308.11 gi|118431553|ref|NP_148094.2| - 1.4e-115 384.7 1.8 1.6e-115 384.4 1.3 1.1 1 0 0 1 1 1 1 ArgK protein CbiA PF01656.18 gi|118431553|ref|NP_148094.2| - 7.3e-09 35.3 0.0 1.2e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|118431553|ref|NP_148094.2| - 3.9e-08 32.9 0.5 1.7e-07 30.9 0.4 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|118431553|ref|NP_148094.2| - 5.7e-06 26.0 0.0 1.8e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|118431553|ref|NP_148094.2| - 2.1e-05 24.1 0.2 0.00011 21.7 0.1 2.1 2 1 0 2 2 2 1 AAA-like domain ATP_bind_1 PF03029.12 gi|118431553|ref|NP_148094.2| - 0.00013 21.6 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|118431553|ref|NP_148094.2| - 0.00019 20.9 0.1 0.0011 18.4 0.1 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|118431553|ref|NP_148094.2| - 0.00051 19.7 0.1 0.0011 18.6 0.1 1.5 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|118431553|ref|NP_148094.2| - 0.00056 19.9 0.1 0.0012 18.8 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|118431553|ref|NP_148094.2| - 0.00074 19.1 0.1 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|118431553|ref|NP_148094.2| - 0.0011 18.4 0.0 0.076 12.4 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain NB-ARC PF00931.17 gi|118431553|ref|NP_148094.2| - 0.0052 15.6 0.0 0.0087 14.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Glyco_trans_4_4 PF13579.1 gi|118431553|ref|NP_148094.2| - 0.0059 16.7 0.4 0.017 15.2 0.1 2.3 2 1 0 2 2 1 1 Glycosyl transferase 4-like domain MipZ PF09140.6 gi|118431553|ref|NP_148094.2| - 0.006 15.6 0.0 0.011 14.8 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_17 PF13207.1 gi|118431553|ref|NP_148094.2| - 0.013 16.3 0.5 0.035 14.9 0.2 1.9 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.15 gi|118431553|ref|NP_148094.2| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.1 gi|118431553|ref|NP_148094.2| - 0.023 14.6 0.6 1.2 9.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|118431553|ref|NP_148094.2| - 0.029 14.3 0.1 3.2 7.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|118431553|ref|NP_148094.2| - 0.03 14.2 0.1 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|118431553|ref|NP_148094.2| - 0.033 13.2 0.0 0.062 12.4 0.0 1.4 1 0 0 1 1 1 0 KaiC TrwB_AAD_bind PF10412.4 gi|118431553|ref|NP_148094.2| - 0.036 12.6 0.0 0.06 11.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.22 gi|118431553|ref|NP_148094.2| - 0.038 14.3 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter FIST PF08495.5 gi|118431553|ref|NP_148094.2| - 0.038 13.1 0.0 0.082 12.0 0.0 1.5 1 0 0 1 1 1 0 FIST N domain KTI12 PF08433.5 gi|118431553|ref|NP_148094.2| - 0.081 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|118431553|ref|NP_148094.2| - 0.097 12.4 1.0 0.24 11.1 0.1 2.2 2 0 0 2 2 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|118431553|ref|NP_148094.2| - 0.098 12.6 0.2 0.2 11.6 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|118431553|ref|NP_148094.2| - 0.12 11.8 0.0 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|118431553|ref|NP_148094.2| - 0.2 11.9 0.2 0.2 11.9 0.1 1.9 2 0 0 2 2 1 0 AAA domain B12-binding PF02310.14 gi|118431554|ref|NP_148095.2| - 2.8e-20 72.3 0.2 3.9e-20 71.9 0.1 1.2 1 0 0 1 1 1 1 B12 binding domain IU_nuc_hydro PF01156.14 gi|118431554|ref|NP_148095.2| - 0.11 11.6 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase MM_CoA_mutase PF01642.17 gi|14601556|ref|NP_148096.1| - 8.4e-191 634.5 0.0 9.6e-191 634.3 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Peripla_BP_2 PF01497.13 gi|118431555|ref|NP_148097.2| - 1.2e-23 83.5 0.0 1.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF309 PF03745.9 gi|118431556|ref|NP_148099.2| - 4.1e-13 48.5 0.4 8.9e-13 47.4 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF309) Reovirus_L2 PF06016.6 gi|118431556|ref|NP_148099.2| - 0.025 11.5 0.0 0.033 11.1 0.0 1.1 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) Zip PF02535.17 gi|14601560|ref|NP_148100.1| - 3.1e-19 69.1 26.4 1.3e-17 63.8 8.2 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|14601560|ref|NP_148100.1| - 0.014 14.4 2.6 0.26 10.3 0.8 2.6 1 1 0 1 1 1 0 E1-E2 ATPase PT-VENN PF04829.8 gi|14601560|ref|NP_148100.1| - 1.2 8.7 6.4 7.9 6.1 0.1 2.6 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Pyrophosphatase PF00719.14 gi|118431557|ref|NP_148101.2| - 2.9e-59 198.9 0.0 3.3e-59 198.7 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase COX15-CtaA PF02628.10 gi|118431559|ref|NP_148103.2| - 2.1e-25 89.2 11.9 2.3e-25 89.0 8.2 1.0 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein ALMT PF11744.3 gi|118431559|ref|NP_148103.2| - 0.17 10.5 5.5 0.23 10.1 3.8 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter SirB PF04247.7 gi|118431559|ref|NP_148103.2| - 0.66 9.7 9.1 1 9.0 6.0 1.8 1 1 0 1 1 1 0 Invasion gene expression up-regulator, SirB DUF1516 PF07457.6 gi|118431559|ref|NP_148103.2| - 0.8 9.8 6.5 0.11 12.5 1.9 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1516) Cytochrom_B_N PF00033.14 gi|118431559|ref|NP_148103.2| - 2.3 7.5 13.1 13 5.1 4.8 2.2 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB GCV_T PF01571.16 gi|118431560|ref|NP_148104.2| - 3.8e-50 170.1 0.0 5.3e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|118431560|ref|NP_148104.2| - 1.2e-20 73.2 0.3 6.4e-20 70.9 0.1 2.1 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|118431560|ref|NP_148104.2| - 0.0048 16.7 0.0 0.014 15.2 0.0 1.7 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family PTPS PF01242.14 gi|14601565|ref|NP_148105.1| - 0.13 11.9 0.0 0.44 10.2 0.0 1.8 1 1 0 1 1 1 0 6-pyruvoyl tetrahydropterin synthase DUF2299 PF10061.4 gi|14601567|ref|NP_148107.1| - 2.5e-41 140.3 0.0 2.8e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) ABC_tran PF00005.22 gi|14601569|ref|NP_148109.1| - 9.5e-23 81.0 0.0 1.2e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14601569|ref|NP_148109.1| - 5.1e-12 46.3 0.0 3.3e-11 43.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|14601569|ref|NP_148109.1| - 3.6e-07 29.6 0.0 0.015 14.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|14601569|ref|NP_148109.1| - 0.002 17.6 0.0 0.35 10.2 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|14601569|ref|NP_148109.1| - 0.0057 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MutS_V PF00488.16 gi|14601569|ref|NP_148109.1| - 0.0091 15.4 0.0 2.9 7.2 0.0 2.3 2 0 0 2 2 2 2 MutS domain V AAA_13 PF13166.1 gi|14601569|ref|NP_148109.1| - 0.02 13.3 0.0 2.6 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|14601569|ref|NP_148109.1| - 0.057 12.6 0.1 0.085 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|14601569|ref|NP_148109.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|14601569|ref|NP_148109.1| - 0.1 12.8 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.12 gi|14601570|ref|NP_148110.1| - 3.1e-61 206.7 0.1 3.9e-61 206.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|14601571|ref|NP_148111.1| - 1.8e-41 142.1 0.0 2.2e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF4398 PF14346.1 gi|14601572|ref|NP_148112.1| - 1.6e-13 50.6 107.9 4.3e-09 36.3 22.4 7.3 4 1 2 7 7 7 4 Domain of unknown function (DUF4398) EzrA PF06160.7 gi|14601572|ref|NP_148112.1| - 3.3e-06 25.5 53.7 0.0002 19.6 14.5 5.3 2 1 2 5 5 5 3 Septation ring formation regulator, EzrA DUF2450 PF10475.4 gi|14601572|ref|NP_148112.1| - 0.16 10.8 14.0 1.1 8.0 2.8 3.6 2 1 1 3 3 3 0 Protein of unknown function N-terminal domain (DUF2450) DUF883 PF05957.8 gi|14601572|ref|NP_148112.1| - 1.1 9.6 68.0 1.5 9.3 5.0 9.1 4 3 3 8 8 8 0 Bacterial protein of unknown function (DUF883) PMEI PF04043.10 gi|14601572|ref|NP_148112.1| - 1.2 8.9 29.8 0.66 9.8 0.9 5.7 2 1 2 5 5 5 0 Plant invertase/pectin methylesterase inhibitor Synaptobrevin PF00957.16 gi|14601572|ref|NP_148112.1| - 2.2 7.9 15.9 0.53 9.9 0.5 4.5 3 2 1 4 4 4 0 Synaptobrevin MscS_porin PF12795.2 gi|14601572|ref|NP_148112.1| - 2.5 7.3 63.8 0.23 10.7 0.7 5.9 2 1 2 5 5 5 0 Mechanosensitive ion channel porin domain Zw10 PF06248.8 gi|14601572|ref|NP_148112.1| - 3.3 5.7 29.3 0.14 10.2 4.4 3.9 1 1 3 4 4 4 0 Centromere/kinetochore Zw10 Baculo_p24 PF05073.7 gi|14601572|ref|NP_148112.1| - 5.2 6.5 10.2 2.2 7.8 0.6 3.6 2 1 2 4 4 4 0 Baculovirus P24 capsid protein ING PF12998.2 gi|14601572|ref|NP_148112.1| - 9.7 6.5 35.1 0.36 11.1 1.3 5.8 3 2 1 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding HTH_24 PF13412.1 gi|14601575|ref|NP_148115.1| - 1.6e-08 33.8 0.0 3e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|14601575|ref|NP_148115.1| - 1.9e-05 24.1 0.1 3.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|14601575|ref|NP_148115.1| - 0.00067 19.2 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|14601575|ref|NP_148115.1| - 0.001 18.5 0.1 0.0024 17.3 0.1 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|14601575|ref|NP_148115.1| - 0.0011 18.6 0.0 0.0021 17.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|14601575|ref|NP_148115.1| - 0.0093 15.7 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|14601575|ref|NP_148115.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|14601575|ref|NP_148115.1| - 0.02 14.5 0.1 0.077 12.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4307 PF14155.1 gi|14601575|ref|NP_148115.1| - 0.021 14.6 4.7 1.9 8.3 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) HTH_27 PF13463.1 gi|14601575|ref|NP_148115.1| - 0.033 14.4 0.0 0.072 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|14601575|ref|NP_148115.1| - 0.047 13.3 0.2 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 HTH domain DUF2232 PF09991.4 gi|14601575|ref|NP_148115.1| - 0.075 12.0 0.8 0.5 9.2 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) HTH_psq PF05225.11 gi|14601575|ref|NP_148115.1| - 0.082 12.4 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain TFIIH_BTF_p62_N PF08567.6 gi|14601575|ref|NP_148115.1| - 0.092 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 TFIIH p62 subunit, N-terminal domain Citrate_synt PF00285.16 gi|14601576|ref|NP_148116.1| - 7.3e-117 390.0 0.0 8.2e-117 389.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase ERp29 PF07749.7 gi|14601576|ref|NP_148116.1| - 0.18 12.4 1.2 0.45 11.1 0.2 2.0 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain CitG PF01874.11 gi|118431563|ref|NP_148117.2| - 4e-42 144.3 0.0 4.6e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Methyltrn_RNA_2 PF04013.7 gi|118431563|ref|NP_148117.2| - 0.092 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase Amidase PF01425.16 gi|118431564|ref|NP_148119.2| - 1.3e-115 386.8 0.0 1.4e-115 386.6 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|14601580|ref|NP_148120.1| - 8.7e-100 333.2 0.0 1.2e-99 332.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|14601580|ref|NP_148120.1| - 5.2e-28 97.6 0.0 8.4e-28 96.9 0.0 1.3 1 0 0 1 1 1 1 GatB domain DUF4366 PF14283.1 gi|118431565|ref|NP_148121.2| - 0.024 14.0 1.4 0.035 13.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) COX2 PF00116.15 gi|14601582|ref|NP_148122.1| - 9.8e-24 83.4 0.0 1.5e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Adeno_E3_CR2 PF02439.10 gi|14601582|ref|NP_148122.1| - 0.49 9.9 2.5 1.2 8.7 1.7 1.6 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 SCO1-SenC PF02630.9 gi|14601583|ref|NP_148123.1| - 0.0048 16.5 0.0 0.023 14.3 0.0 2.0 1 1 1 2 2 2 1 SCO1/SenC MacB_PCD PF12704.2 gi|14601583|ref|NP_148123.1| - 0.074 12.6 0.2 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 MacB-like periplasmic core domain Thioredoxin PF00085.15 gi|14601584|ref|NP_148124.1| - 1.7e-08 34.0 0.0 3.6e-08 33.0 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin DsbD PF02683.10 gi|14601584|ref|NP_148124.1| - 8.1e-06 25.5 23.4 1.5e-05 24.7 13.4 2.6 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.1 gi|14601584|ref|NP_148124.1| - 1e-05 25.7 0.0 2.1e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|14601584|ref|NP_148124.1| - 0.00031 20.5 0.0 0.00099 18.8 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|14601584|ref|NP_148124.1| - 0.071 13.2 0.0 1.8 8.6 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like DUF461 PF04314.8 gi|118431566|ref|YP_874912.1| - 1.2e-11 44.1 0.1 1.7e-11 43.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF461) DUF2393 PF09624.5 gi|118431566|ref|YP_874912.1| - 0.97 8.9 3.5 2.1 7.8 2.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2393) Methyltransf_3 PF01596.12 gi|118431567|ref|NP_148125.2| - 1.5e-09 37.2 0.0 1.9e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|118431567|ref|NP_148125.2| - 2.4e-09 37.7 0.0 3.7e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|118431567|ref|NP_148125.2| - 1.5e-06 28.9 0.0 2.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|118431567|ref|NP_148125.2| - 0.026 14.5 0.0 0.052 13.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|118431567|ref|NP_148125.2| - 0.043 13.5 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|118431567|ref|NP_148125.2| - 0.064 12.7 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Rieske PF00355.21 gi|118431568|ref|NP_148126.2| - 5e-26 90.0 0.0 7.9e-26 89.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain CytB6-F_Fe-S PF08802.5 gi|118431568|ref|NP_148126.2| - 0.028 14.4 0.2 0.028 14.4 0.2 2.4 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.4 gi|118431568|ref|NP_148126.2| - 0.05 13.6 0.1 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|14601587|ref|NP_148127.1| - 4.7e-30 104.5 2.4 4.7e-30 104.5 1.7 3.4 3 1 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|14601587|ref|NP_148127.1| - 0.012 15.7 4.1 0.012 15.7 2.8 3.3 4 0 0 4 4 4 0 Cytochrome b(C-terminal)/b6/petD VKOR PF07884.9 gi|118431569|ref|NP_148128.2| - 2.6e-20 72.7 8.6 2.9e-20 72.5 6.0 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family SBP_bac_1 PF01547.20 gi|14601589|ref|NP_148129.1| - 3.2e-28 99.3 3.5 1.2e-27 97.5 2.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|14601589|ref|NP_148129.1| - 5.7e-24 84.7 0.1 8.9e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|14601589|ref|NP_148129.1| - 2.7e-20 73.2 0.2 4.7e-20 72.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|14601589|ref|NP_148129.1| - 1e-12 48.2 0.2 2.3e-12 47.0 0.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|118431570|ref|NP_148130.2| - 5.2e-20 71.7 33.1 1e-12 47.9 7.4 3.7 2 2 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|14601591|ref|NP_148131.1| - 1e-33 116.5 0.0 1.8e-33 115.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|14601591|ref|NP_148131.1| - 9.1e-13 48.1 2.7 4.3e-08 33.1 0.0 3.3 3 0 0 3 3 3 2 TOBE domain TOBE_2 PF08402.5 gi|14601591|ref|NP_148131.1| - 2e-10 40.4 2.6 2.8e-10 40.0 0.0 2.6 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|14601591|ref|NP_148131.1| - 3.2e-08 33.8 0.0 9.4e-05 22.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|14601591|ref|NP_148131.1| - 0.00024 20.2 0.0 0.0027 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|14601591|ref|NP_148131.1| - 0.001 19.2 0.0 0.0025 17.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_16 PF13191.1 gi|14601591|ref|NP_148131.1| - 0.004 17.1 0.1 0.01 15.8 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|14601591|ref|NP_148131.1| - 0.0043 15.8 0.0 0.0063 15.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|14601591|ref|NP_148131.1| - 0.0056 16.8 1.8 0.066 13.3 1.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|14601591|ref|NP_148131.1| - 0.02 15.0 0.3 0.057 13.6 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|14601591|ref|NP_148131.1| - 0.024 14.5 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|14601591|ref|NP_148131.1| - 0.028 14.3 1.0 0.27 11.0 0.7 2.1 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|14601591|ref|NP_148131.1| - 0.035 13.7 0.0 0.074 12.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|14601591|ref|NP_148131.1| - 0.043 13.0 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|14601591|ref|NP_148131.1| - 0.047 13.4 0.2 0.15 11.8 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_29 PF13555.1 gi|14601591|ref|NP_148131.1| - 0.052 13.0 0.1 0.2 11.1 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|14601591|ref|NP_148131.1| - 0.081 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_23 PF13476.1 gi|14601591|ref|NP_148131.1| - 0.18 12.1 0.1 0.29 11.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain Methyltrn_RNA_2 PF04013.7 gi|118431571|ref|NP_148132.2| - 0.023 14.2 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase SRP54 PF00448.17 gi|14601593|ref|NP_148133.1| - 1.5e-64 217.0 0.0 2e-64 216.6 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|14601593|ref|NP_148133.1| - 3e-30 104.5 1.1 5.7e-29 100.4 0.9 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|14601593|ref|NP_148133.1| - 7.1e-13 48.4 0.0 2.2e-12 46.8 0.0 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|14601593|ref|NP_148133.1| - 1.1e-06 28.1 0.1 4.4e-06 26.2 0.1 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|14601593|ref|NP_148133.1| - 2.3e-06 27.3 0.1 9.6e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|14601593|ref|NP_148133.1| - 1.1e-05 25.3 0.0 2.3e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|14601593|ref|NP_148133.1| - 2.4e-05 25.1 0.8 7.1e-05 23.6 0.0 2.2 3 0 0 3 3 1 1 AAA domain AAA_10 PF12846.2 gi|14601593|ref|NP_148133.1| - 0.00018 21.0 0.2 0.0017 17.8 0.1 2.2 1 1 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|14601593|ref|NP_148133.1| - 0.0011 18.5 0.1 0.0046 16.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|14601593|ref|NP_148133.1| - 0.0013 18.9 0.0 0.0034 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|14601593|ref|NP_148133.1| - 0.0016 18.4 0.0 0.0058 16.6 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain KaiC PF06745.8 gi|14601593|ref|NP_148133.1| - 0.0024 17.0 0.3 0.0066 15.5 0.0 1.9 2 0 0 2 2 2 1 KaiC Zeta_toxin PF06414.7 gi|14601593|ref|NP_148133.1| - 0.0046 16.0 0.0 0.0091 15.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|14601593|ref|NP_148133.1| - 0.0072 16.0 0.4 0.03 14.0 0.3 2.2 1 1 0 1 1 1 1 Part of AAA domain APS_kinase PF01583.15 gi|14601593|ref|NP_148133.1| - 0.0099 15.5 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.1 gi|14601593|ref|NP_148133.1| - 0.012 15.0 0.1 0.075 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|14601593|ref|NP_148133.1| - 0.012 14.3 0.1 0.034 12.9 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_5 PF07728.9 gi|14601593|ref|NP_148133.1| - 0.016 14.8 0.0 0.056 13.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|14601593|ref|NP_148133.1| - 0.019 15.2 0.0 0.066 13.5 0.0 2.1 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|14601593|ref|NP_148133.1| - 0.025 13.8 0.0 0.05 12.8 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.24 gi|14601593|ref|NP_148133.1| - 0.036 14.2 0.1 0.21 11.8 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) LpxK PF02606.9 gi|14601593|ref|NP_148133.1| - 0.1 11.5 0.1 0.23 10.3 0.0 1.5 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase Thymidylate_kin PF02223.12 gi|14601593|ref|NP_148133.1| - 0.1 11.9 0.0 0.28 10.5 0.0 1.8 1 0 0 1 1 1 0 Thymidylate kinase IstB_IS21 PF01695.12 gi|14601593|ref|NP_148133.1| - 0.11 11.8 0.5 0.96 8.8 0.0 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_31 PF13614.1 gi|14601593|ref|NP_148133.1| - 0.18 11.7 0.0 1.2 9.0 0.0 2.2 2 1 1 3 3 2 0 AAA domain Ribosomal_S13 PF00416.17 gi|118431572|ref|NP_148134.2| - 1.1e-31 109.3 0.0 1.3e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|118431572|ref|NP_148134.2| - 0.026 13.0 0.0 0.032 12.7 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH_4 PF14490.1 gi|118431572|ref|NP_148134.2| - 0.098 12.4 0.0 0.25 11.1 0.0 1.6 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain S4 PF01479.20 gi|118431573|ref|NP_148135.2| - 8.4e-16 57.1 0.2 1.9e-15 55.9 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|118431573|ref|NP_148135.2| - 6.5e-05 23.2 1.9 6.5e-05 23.2 1.3 1.8 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|118431574|ref|NP_148136.2| - 7.4e-43 145.2 0.5 8.7e-43 144.9 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 M20_dimer PF07687.9 gi|118431574|ref|NP_148136.2| - 0.066 12.9 0.3 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Peptidase dimerisation domain RNA_pol_A_bac PF01000.21 gi|118431575|ref|NP_148137.2| - 2.2e-26 92.2 0.0 3.7e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|118431575|ref|NP_148137.2| - 1.1e-12 46.8 0.0 1.4e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Cadherin_pro PF08758.6 gi|118431575|ref|NP_148137.2| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Cadherin prodomain like Ribosomal_L18e PF00828.14 gi|14601599|ref|NP_148139.1| - 4.8e-12 46.3 0.2 5.7e-12 46.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|14601600|ref|NP_148140.1| - 1.2e-26 93.2 0.0 1.5e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|14601601|ref|NP_148141.1| - 2e-33 115.2 0.0 2.5e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|14601602|ref|NP_148142.1| - 2.6e-25 88.2 0.1 3e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|14601602|ref|NP_148142.1| - 0.016 15.2 0.0 0.023 14.7 0.0 1.3 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.15 gi|14601603|ref|NP_148143.1| - 6.8e-37 126.7 0.0 1.8e-22 79.6 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_binding PF01877.12 gi|14601604|ref|NP_148144.1| - 4e-28 97.8 0.1 4.7e-28 97.6 0.1 1.1 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.1 gi|118431576|ref|NP_148145.2| - 5.7e-13 49.7 0.1 6.7e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118431576|ref|NP_148145.2| - 4.2e-12 46.4 0.1 5.7e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|118431576|ref|NP_148145.2| - 1.9e-10 40.7 0.1 2.8e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|118431576|ref|NP_148145.2| - 1.5e-06 27.4 0.0 1.8e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin Cytidylate_kin2 PF13189.1 gi|118431576|ref|NP_148145.2| - 1.4e-05 25.0 0.3 0.02 14.7 0.0 2.5 2 1 0 2 2 2 2 Cytidylate kinase-like family CoaE PF01121.15 gi|118431576|ref|NP_148145.2| - 4.9e-05 22.8 0.0 0.051 12.9 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_16 PF13191.1 gi|118431576|ref|NP_148145.2| - 9.7e-05 22.4 0.1 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|118431576|ref|NP_148145.2| - 0.00011 21.9 1.1 0.0004 20.0 0.4 2.4 1 1 1 2 2 2 1 Part of AAA domain APS_kinase PF01583.15 gi|118431576|ref|NP_148145.2| - 0.00061 19.4 0.1 0.0015 18.2 0.0 1.7 1 1 0 1 1 1 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|118431576|ref|NP_148145.2| - 0.00096 19.3 0.0 0.0016 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|118431576|ref|NP_148145.2| - 0.0012 18.1 0.0 0.0017 17.6 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA PF00004.24 gi|118431576|ref|NP_148145.2| - 0.0015 18.7 0.1 0.0034 17.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|118431576|ref|NP_148145.2| - 0.003 17.4 0.0 0.0039 17.0 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase RuvB_N PF05496.7 gi|118431576|ref|NP_148145.2| - 0.015 14.3 0.0 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|118431576|ref|NP_148145.2| - 0.018 14.7 0.2 0.029 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|118431576|ref|NP_148145.2| - 0.021 14.5 0.2 0.035 13.8 0.1 1.5 1 1 0 1 1 1 0 NTPase AAA_28 PF13521.1 gi|118431576|ref|NP_148145.2| - 0.03 14.2 0.6 0.077 12.9 0.1 2.0 1 1 1 2 2 2 0 AAA domain SKI PF01202.17 gi|118431576|ref|NP_148145.2| - 0.031 14.1 0.1 0.055 13.3 0.0 1.6 1 1 0 1 1 1 0 Shikimate kinase DUF2075 PF09848.4 gi|118431576|ref|NP_148145.2| - 0.037 13.0 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ArgK PF03308.11 gi|118431576|ref|NP_148145.2| - 0.049 12.3 0.2 0.16 10.7 0.1 1.8 2 0 0 2 2 2 0 ArgK protein Torsin PF06309.6 gi|118431576|ref|NP_148145.2| - 0.066 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Torsin AAA_30 PF13604.1 gi|118431576|ref|NP_148145.2| - 0.075 12.6 0.2 0.52 9.8 0.1 2.1 1 1 0 2 2 2 0 AAA domain Sigma70_r3 PF04539.11 gi|118431576|ref|NP_148145.2| - 0.08 12.8 2.1 0.14 12.0 0.3 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 Radical_SAM PF04055.16 gi|118431576|ref|NP_148145.2| - 0.08 13.1 0.1 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 Radical SAM superfamily B12-binding PF02310.14 gi|118431576|ref|NP_148145.2| - 0.091 12.6 0.2 7.9 6.3 0.0 2.6 2 1 0 2 2 2 0 B12 binding domain NB-ARC PF00931.17 gi|118431576|ref|NP_148145.2| - 0.093 11.5 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF3596 PF12167.3 gi|118431576|ref|NP_148145.2| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3596) Aminotran_5 PF00266.14 gi|118431577|ref|NP_148146.2| - 1.3e-39 136.0 0.0 1.8e-39 135.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|118431577|ref|NP_148146.2| - 7.1e-08 31.7 0.0 1.6e-07 30.6 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|118431577|ref|NP_148146.2| - 1.5e-05 23.4 0.0 2.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|118431577|ref|NP_148146.2| - 0.001 18.1 0.0 0.0022 17.0 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA-synt_1d PF00750.14 gi|14601607|ref|NP_148147.1| - 2.5e-48 164.7 0.0 1.2e-28 100.0 0.0 2.5 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|14601607|ref|NP_148147.1| - 2.8e-28 98.2 0.0 5.4e-28 97.3 0.0 1.5 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|14601607|ref|NP_148147.1| - 1.5e-11 44.6 0.0 4e-11 43.2 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|14601607|ref|NP_148147.1| - 0.0086 14.7 0.0 0.58 8.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|14601607|ref|NP_148147.1| - 0.025 12.6 0.0 0.054 11.4 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|14601607|ref|NP_148147.1| - 0.29 9.7 0.0 1.3 7.6 0.0 2.0 3 0 0 3 3 3 0 tRNA synthetases class I (M) RtcB PF01139.12 gi|118431578|ref|NP_148148.2| - 5.1e-152 506.7 0.0 5.7e-152 506.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB CYTH PF01928.16 gi|118431579|ref|NP_148149.2| - 1.7e-27 96.2 2.4 2e-27 96.0 1.7 1.1 1 0 0 1 1 1 1 CYTH domain DUF2118 PF09891.4 gi|14601611|ref|NP_148151.1| - 1.7e-47 160.9 1.5 1.9e-47 160.7 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) polyprenyl_synt PF00348.12 gi|118431580|ref|NP_148152.2| - 2.5e-64 216.6 0.2 3.3e-64 216.2 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase FMN_dh PF01070.13 gi|118431581|ref|NP_148153.2| - 1.1e-19 70.5 0.2 4.8e-15 55.2 0.2 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|118431581|ref|NP_148153.2| - 0.00014 20.8 1.2 0.00023 20.1 0.4 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|118431581|ref|NP_148153.2| - 0.0042 16.0 0.4 0.007 15.3 0.3 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase MR_MLE_C PF13378.1 gi|118431581|ref|NP_148153.2| - 0.026 14.5 0.7 1.3 9.0 0.0 3.2 3 0 0 3 3 3 0 Enolase C-terminal domain-like AA_kinase PF00696.23 gi|118431582|ref|NP_148154.2| - 1.4e-23 83.6 0.2 2e-23 83.1 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family Memo PF01875.12 gi|14601616|ref|NP_148156.1| - 2.8e-69 233.0 0.0 3.1e-69 232.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|14601616|ref|NP_148156.1| - 0.041 12.8 0.0 0.28 10.1 0.0 1.9 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase MatE PF01554.13 gi|118431584|ref|NP_148157.2| - 5.2e-48 162.7 27.5 6.3e-27 94.1 4.7 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|118431584|ref|NP_148157.2| - 4.6e-08 32.9 7.4 4.6e-08 32.9 5.1 4.9 2 2 4 6 6 6 1 Polysaccharide biosynthesis C-terminal domain Peptidase_M32 PF02074.10 gi|118431585|ref|NP_148158.2| - 5.3e-184 612.4 0.1 6.2e-184 612.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase HTH_IclR PF09339.5 gi|118431586|ref|YP_874913.1| - 0.039 13.5 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain ASCH PF04266.9 gi|118431587|ref|NP_148160.2| - 0.0049 17.2 0.0 0.0065 16.8 0.0 1.4 1 1 0 1 1 1 1 ASCH domain SIR2 PF02146.12 gi|118431588|ref|NP_148161.2| - 5.2e-56 189.1 0.0 6.3e-56 188.9 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.5 gi|118431588|ref|NP_148161.2| - 0.0023 17.8 0.7 0.004 17.0 0.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|118431588|ref|NP_148161.2| - 0.032 14.0 0.3 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|118431588|ref|NP_148161.2| - 0.039 13.6 0.1 0.076 12.7 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|118431588|ref|NP_148161.2| - 0.33 10.2 1.9 7.9 5.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|118431588|ref|NP_148161.2| - 0.53 9.8 2.9 3.3 7.3 2.0 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|118431588|ref|NP_148161.2| - 0.55 9.4 3.2 1.3 8.2 2.2 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|118431588|ref|NP_148161.2| - 0.86 8.9 2.7 9.7 5.6 0.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Mu-like_Com PF10122.4 gi|118431588|ref|NP_148161.2| - 0.97 8.5 5.6 1.9 7.6 1.9 2.4 2 1 0 2 2 2 0 Mu-like prophage protein Com HTH_45 PF14947.1 gi|118431590|ref|NP_148164.2| - 0.032 14.0 0.3 0.054 13.3 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.11 gi|118431590|ref|NP_148164.2| - 0.067 13.2 1.0 0.17 11.9 0.2 2.1 2 1 0 2 2 2 0 HemN C-terminal domain SelB-wing_2 PF09106.6 gi|118431590|ref|NP_148164.2| - 0.1 12.5 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Aldedh PF00171.17 gi|118431591|ref|NP_148165.2| - 6.5e-122 407.1 0.0 7.4e-122 406.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|118431591|ref|NP_148165.2| - 2.3e-07 29.9 0.0 8.9e-07 27.9 0.0 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|118431591|ref|NP_148165.2| - 0.027 13.7 0.0 4.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) BMC PF00936.14 gi|118431591|ref|NP_148165.2| - 2 8.1 4.7 3.3 7.4 0.1 3.3 4 0 0 4 4 4 0 BMC domain Trm112p PF03966.11 gi|118431592|ref|NP_148166.2| - 0.12 12.7 0.3 4.7 7.6 0.2 2.1 1 1 0 1 1 1 0 Trm112p-like protein tRNA_NucTransf2 PF09249.6 gi|118431594|ref|NP_148168.2| - 1.2e-39 134.7 0.0 1.6e-39 134.2 0.0 1.2 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|118431594|ref|NP_148168.2| - 1.8e-17 63.4 0.0 3e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|14601629|ref|NP_148169.1| - 4.6e-33 113.0 0.1 1e-16 60.6 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|14601629|ref|NP_148169.1| - 1.9e-14 53.6 0.0 2.4e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|14601629|ref|NP_148169.1| - 4.9e-10 39.4 0.0 1.2e-09 38.1 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain FeoA PF04023.9 gi|14601629|ref|NP_148169.1| - 0.045 13.7 0.8 0.46 10.4 0.1 2.6 2 0 0 2 2 2 0 FeoA domain HVSL PF09749.4 gi|14601629|ref|NP_148169.1| - 0.057 12.4 0.0 0.12 11.3 0.0 1.5 1 1 1 2 2 2 0 Uncharacterised conserved protein Topoisom_bac PF01131.15 gi|14601630|ref|NP_148170.1| - 1.2e-96 324.0 0.0 1.4e-96 323.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|14601630|ref|NP_148170.1| - 1.4e-05 24.9 0.0 3.4e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Peptidase_S24 PF00717.18 gi|118431595|ref|NP_148171.2| - 1.6e-08 34.0 0.5 2.5e-08 33.4 0.4 1.4 1 0 0 1 1 1 1 Peptidase S24-like B3_4 PF03483.12 gi|14601632|ref|NP_148172.1| - 1.2e-30 106.2 0.0 3.2e-30 104.8 0.0 1.6 2 0 0 2 2 2 1 B3/4 domain Inositol_P PF00459.20 gi|118431596|ref|NP_148173.2| - 1.6e-38 132.5 0.5 1.8e-38 132.3 0.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|118431596|ref|NP_148173.2| - 0.052 12.3 0.0 0.093 11.5 0.0 1.4 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase zf-DHHC PF01529.15 gi|118431597|ref|NP_148174.2| - 0.023 14.0 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 DHHC palmitoyltransferase DZR PF12773.2 gi|118431597|ref|NP_148174.2| - 6.1 6.7 14.9 1.7 8.5 4.8 2.4 2 1 0 2 2 2 0 Double zinc ribbon AsnC_trans_reg PF01037.16 gi|118431598|ref|YP_874914.1| - 5.6e-11 41.9 0.1 6.5e-11 41.7 0.1 1.1 1 0 0 1 1 1 1 AsnC family NapD PF03927.8 gi|118431598|ref|YP_874914.1| - 0.044 13.6 0.0 0.062 13.1 0.0 1.2 1 1 0 1 1 1 0 NapD protein ACT_4 PF13291.1 gi|118431598|ref|YP_874914.1| - 0.044 14.1 0.0 0.088 13.1 0.0 1.6 1 1 0 1 1 1 0 ACT domain GYD PF08734.6 gi|118431598|ref|YP_874914.1| - 0.048 13.3 0.0 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 GYD domain DUF3877 PF12993.2 gi|118431598|ref|YP_874914.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3877) eRF1_2 PF03464.10 gi|118431599|ref|NP_148176.2| - 4.2e-22 78.8 0.1 8.5e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|118431599|ref|NP_148176.2| - 8e-22 77.6 0.0 1.9e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|118431599|ref|NP_148176.2| - 6.9e-18 64.4 0.0 1.3e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 DUF4350 PF14258.1 gi|118431599|ref|NP_148176.2| - 0.1 12.8 0.4 1.4 9.1 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) MDMPI_N PF11716.3 gi|118431599|ref|NP_148176.2| - 0.69 10.3 6.0 0.34 11.3 1.0 2.5 1 1 2 3 3 3 0 Mycothiol maleylpyruvate isomerase N-terminal domain tRNA-synt_1 PF00133.17 gi|118431600|ref|NP_148179.2| - 7.5e-115 384.2 0.0 4.3e-114 381.6 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|118431600|ref|NP_148179.2| - 2.1e-25 89.2 0.0 1e-13 50.7 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|118431600|ref|NP_148179.2| - 3.3e-23 82.1 0.1 6.2e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.2 gi|118431600|ref|NP_148179.2| - 0.0053 16.5 1.4 0.74 9.6 0.1 3.1 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1_2 PF13603.1 gi|118431600|ref|NP_148179.2| - 0.0057 15.9 0.0 0.15 11.3 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 zinc_ribbon_2 PF13240.1 gi|118431600|ref|NP_148179.2| - 0.012 15.0 1.1 0.012 15.0 0.8 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|118431600|ref|NP_148179.2| - 0.072 12.3 6.7 0.03 13.5 0.6 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|118431600|ref|NP_148179.2| - 0.11 12.5 3.2 61 3.7 0.1 3.7 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|118431600|ref|NP_148179.2| - 0.92 9.0 4.6 3.1 7.3 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF457 PF04307.9 gi|14601640|ref|NP_148181.1| - 2.6e-19 69.0 6.2 3.2e-19 68.7 4.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2613 PF11021.3 gi|14601640|ref|NP_148181.1| - 0.0081 15.8 0.9 0.016 14.9 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2613) DUF4203 PF13886.1 gi|14601640|ref|NP_148181.1| - 0.15 11.5 8.5 0.22 10.9 5.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) ABC_ATPase PF09818.4 gi|14601641|ref|NP_148182.1| - 3.5e-146 487.3 0.0 4.9e-146 486.8 0.0 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|14601641|ref|NP_148182.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|14601641|ref|NP_148182.1| - 0.04 13.3 0.0 0.094 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|14601641|ref|NP_148182.1| - 0.074 11.9 0.1 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_19 PF13245.1 gi|14601641|ref|NP_148182.1| - 0.24 11.1 2.1 0.55 10.0 0.1 2.6 3 0 0 3 3 3 0 Part of AAA domain DUF457 PF04307.9 gi|118431601|ref|NP_148183.2| - 4.1e-05 22.9 9.3 0.00011 21.5 6.4 1.7 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1286 PF06939.6 gi|118431601|ref|NP_148183.2| - 0.037 14.2 0.1 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1286) VIT1 PF01988.14 gi|118431602|ref|NP_148184.2| - 1.8e-16 60.2 34.9 3.7e-09 36.4 7.4 2.9 1 1 2 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|118431602|ref|NP_148184.2| - 2.4e-07 31.1 10.9 0.00042 20.6 2.0 2.2 2 0 0 2 2 2 2 Rubrerythrin COQ7 PF03232.8 gi|118431602|ref|NP_148184.2| - 0.00055 19.4 0.0 0.84 9.0 0.0 2.4 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.1 gi|118431602|ref|NP_148184.2| - 0.0017 18.2 0.7 0.55 10.1 0.0 2.7 1 1 1 2 2 2 2 Ferritin-like domain Ferritin PF00210.19 gi|118431602|ref|NP_148184.2| - 0.95 9.2 4.4 1.3 8.7 1.0 2.1 2 0 0 2 2 2 0 Ferritin-like domain Claudin_2 PF13903.1 gi|118431602|ref|NP_148184.2| - 2.4 7.7 10.1 18 5.0 7.0 2.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF2975 PF11188.3 gi|118431602|ref|NP_148184.2| - 2.8 7.6 15.2 0.23 11.2 4.8 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2975) TcdA_TcdB_pore PF12920.2 gi|118431602|ref|NP_148184.2| - 5.7 4.7 8.0 8.7 4.1 5.6 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Lyase_1 PF00206.15 gi|118431603|ref|NP_148185.2| - 3e-87 292.7 0.1 3.9e-87 292.3 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|118431603|ref|NP_148185.2| - 1.5e-10 40.9 0.4 1.2e-09 38.0 0.1 2.7 2 0 0 2 2 2 1 Fumarase C C-terminus DUF2286 PF10051.4 gi|118431604|ref|NP_148186.2| - 8.2e-46 155.1 0.1 9.2e-46 154.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) MMR_HSR1_C PF08438.5 gi|118431604|ref|NP_148186.2| - 0.13 12.5 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 GTPase of unknown function C-terminal Ribosomal_L7Ae PF01248.21 gi|14601646|ref|NP_148187.1| - 1.4e-32 111.0 0.2 1.7e-32 110.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|14601646|ref|NP_148187.1| - 0.0019 17.9 0.4 0.0039 16.9 0.1 1.6 1 1 1 2 2 2 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|14601646|ref|NP_148187.1| - 0.055 13.3 0.0 0.057 13.2 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 TruD PF01142.13 gi|14601647|ref|NP_148188.1| - 8e-55 186.0 0.0 2e-54 184.7 0.0 1.5 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) FAD_oxidored PF12831.2 gi|14601648|ref|NP_148189.1| - 4.5e-10 39.1 0.0 1.9e-09 37.1 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.19 gi|14601648|ref|NP_148189.1| - 4.2e-09 35.7 5.8 1.8e-06 27.1 2.5 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|14601648|ref|NP_148189.1| - 8e-08 32.1 0.7 8e-08 32.1 0.5 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|14601648|ref|NP_148189.1| - 5.1e-07 28.8 3.0 4.2e-06 25.8 2.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|14601648|ref|NP_148189.1| - 9.3e-06 24.9 1.6 1.5e-05 24.2 1.1 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|14601648|ref|NP_148189.1| - 1.5e-05 24.0 1.4 2.8e-05 23.1 1.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|14601648|ref|NP_148189.1| - 3.2e-05 23.1 0.4 5.4e-05 22.4 0.3 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|14601648|ref|NP_148189.1| - 4.7e-05 23.3 0.4 8.1e-05 22.5 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|14601648|ref|NP_148189.1| - 0.00026 19.5 0.7 0.00037 19.0 0.5 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|14601648|ref|NP_148189.1| - 0.00036 20.8 2.4 0.0011 19.3 0.7 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|14601648|ref|NP_148189.1| - 0.00039 19.6 1.4 0.0008 18.5 1.0 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.1 gi|14601648|ref|NP_148189.1| - 0.0038 17.2 0.4 0.0065 16.5 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|14601648|ref|NP_148189.1| - 0.021 13.7 1.6 0.03 13.2 1.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|14601648|ref|NP_148189.1| - 0.057 12.7 0.4 0.085 12.2 0.3 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|14601648|ref|NP_148189.1| - 1.5 7.4 6.1 0.12 10.9 0.7 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Alba PF01918.16 gi|14601649|ref|NP_148190.1| - 4e-15 55.1 0.5 5.2e-15 54.7 0.4 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|14601649|ref|NP_148190.1| - 0.008 15.8 3.2 0.77 9.3 2.2 2.1 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Ribosomal_L31e PF01198.14 gi|14601649|ref|NP_148190.1| - 0.0085 15.7 0.5 0.014 15.0 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L31e DUF1827 PF08860.5 gi|14601649|ref|NP_148190.1| - 0.13 12.3 0.7 0.19 11.8 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) DUF763 PF05559.6 gi|14601650|ref|NP_148191.1| - 6.7e-111 370.2 0.0 8.2e-111 369.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Methyltransf_19 PF04672.7 gi|14601650|ref|NP_148191.1| - 0.094 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl methyltransferase Glt_symporter PF03616.9 gi|14601650|ref|NP_148191.1| - 0.13 10.7 0.1 0.16 10.3 0.0 1.1 1 0 0 1 1 1 0 Sodium/glutamate symporter NAD_kinase PF01513.16 gi|118431605|ref|NP_148192.2| - 2.7e-48 164.1 0.0 3.1e-48 164.0 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|118431605|ref|NP_148192.2| - 0.00017 21.0 0.0 0.00052 19.4 0.0 1.8 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain ABC2_membrane PF01061.19 gi|118431606|ref|NP_148194.2| - 1.1e-08 34.5 21.6 1.1e-08 34.5 15.0 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane PF01061.19 gi|118431607|ref|NP_148195.2| - 3.5e-11 42.6 19.5 3.5e-11 42.6 13.5 1.5 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|118431607|ref|NP_148195.2| - 0.042 12.8 28.6 0.014 14.4 16.6 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|14601655|ref|NP_148196.1| - 3e-27 95.5 0.0 4.2e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14601655|ref|NP_148196.1| - 3e-17 63.5 0.0 2.3e-12 47.4 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|14601655|ref|NP_148196.1| - 0.00026 20.1 0.0 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|14601655|ref|NP_148196.1| - 0.0052 16.7 0.0 0.044 13.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|14601655|ref|NP_148196.1| - 0.0085 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|14601655|ref|NP_148196.1| - 0.031 12.7 0.0 0.84 8.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|14601655|ref|NP_148196.1| - 0.034 13.5 0.0 0.05 13.0 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|14601655|ref|NP_148196.1| - 0.08 13.2 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|14601655|ref|NP_148196.1| - 0.14 11.6 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain 2-Hacid_dh_C PF02826.14 gi|118431608|ref|NP_148197.2| - 1.6e-68 229.3 0.0 2.2e-68 228.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|118431608|ref|NP_148197.2| - 1.1e-40 138.1 0.0 1.3e-40 137.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|118431608|ref|NP_148197.2| - 0.00025 20.9 0.0 0.00077 19.3 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|118431608|ref|NP_148197.2| - 0.0031 16.8 0.0 0.0071 15.7 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain DUF61 PF01886.11 gi|118431608|ref|NP_148197.2| - 0.023 14.5 0.8 0.041 13.7 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF61 AdoHcyase_NAD PF00670.16 gi|118431608|ref|NP_148197.2| - 0.038 13.8 0.0 0.099 12.4 0.0 1.6 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Peptidase_S9 PF00326.16 gi|14601657|ref|NP_148198.1| - 1.2e-54 184.8 0.0 1.6e-54 184.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|14601657|ref|NP_148198.1| - 8e-11 41.8 0.0 1.5e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|14601657|ref|NP_148198.1| - 1.1e-07 31.3 1.1 2e-05 24.1 0.0 4.2 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.13 gi|14601657|ref|NP_148198.1| - 1e-06 28.4 0.0 0.0011 18.5 0.0 2.2 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|14601657|ref|NP_148198.1| - 0.00047 18.7 0.0 0.011 14.3 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|14601657|ref|NP_148198.1| - 0.0005 20.0 0.0 0.014 15.3 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|14601657|ref|NP_148198.1| - 0.0027 17.0 0.0 0.0062 15.8 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase_phd PF10503.4 gi|14601657|ref|NP_148198.1| - 0.011 14.9 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase BAAT_C PF08840.6 gi|14601657|ref|NP_148198.1| - 0.093 12.4 0.0 2.4 7.8 0.0 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Alba PF01918.16 gi|118431609|ref|NP_148199.2| - 2e-15 56.0 0.3 3e-15 55.5 0.2 1.3 1 0 0 1 1 1 1 Alba HTH_41 PF14502.1 gi|118431609|ref|NP_148199.2| - 0.12 12.0 0.2 0.29 10.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Pribosyltran_N PF13793.1 gi|118431610|ref|NP_148200.2| - 4.4e-19 68.3 0.0 8e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|118431610|ref|NP_148200.2| - 1.2e-11 44.3 0.0 3.1e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|118431610|ref|NP_148200.2| - 1.3e-09 38.1 0.0 1.8e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|118431610|ref|NP_148200.2| - 0.0056 15.9 0.0 0.0092 15.2 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase UPF0020 PF01170.13 gi|14601660|ref|NP_148201.1| - 1.9e-47 161.1 0.0 2.7e-47 160.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|14601660|ref|NP_148201.1| - 5.6e-10 39.2 0.0 1e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|14601660|ref|NP_148201.1| - 0.002 17.5 0.0 0.0043 16.4 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.13 gi|14601660|ref|NP_148201.1| - 0.021 14.2 0.0 5 6.5 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Lactamase_B_2 PF12706.2 gi|118431611|ref|NP_148202.2| - 1.3e-18 67.2 0.0 1.7e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|118431611|ref|NP_148202.2| - 7.7e-10 38.7 0.1 5.1e-08 32.7 0.0 2.4 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily CBS PF00571.23 gi|118431612|ref|NP_148203.2| - 1.2e-31 108.1 2.2 4.8e-18 64.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain SchA_CurD PF04486.7 gi|118431612|ref|NP_148203.2| - 0.0057 16.4 0.5 0.0088 15.8 0.3 1.5 1 1 0 1 1 1 1 SchA/CurD like domain Ribosomal_S10 PF00338.17 gi|14601665|ref|NP_148206.1| - 1.8e-30 104.6 0.0 2e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NETI PF14044.1 gi|14601665|ref|NP_148206.1| - 0.064 12.7 0.1 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 NETI protein GTP_EFTU PF00009.22 gi|14601666|ref|NP_148207.1| - 6.6e-59 198.5 0.0 8.8e-59 198.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|14601666|ref|NP_148207.1| - 1.6e-28 98.7 0.1 4.8e-28 97.2 0.1 1.9 2 0 0 2 2 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|14601666|ref|NP_148207.1| - 1.1e-18 67.0 3.3 1.5e-18 66.7 1.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|14601666|ref|NP_148207.1| - 1.3e-07 31.1 0.7 3.3e-07 29.8 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|14601666|ref|NP_148207.1| - 6.9e-06 26.0 0.1 1.6e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|14601666|ref|NP_148207.1| - 2.1e-05 24.9 0.1 0.00012 22.5 0.1 2.1 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|14601666|ref|NP_148207.1| - 0.0029 17.4 0.4 1.1 9.0 0.0 2.7 2 1 1 3 3 3 2 Dynamin family Septin PF00735.13 gi|14601666|ref|NP_148207.1| - 0.007 15.4 0.0 0.016 14.2 0.0 1.5 1 1 0 1 1 1 1 Septin MRP-S22 PF10245.4 gi|14601666|ref|NP_148207.1| - 0.016 14.6 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 Ras PF00071.17 gi|14601666|ref|NP_148207.1| - 0.039 13.3 0.3 0.42 9.9 0.0 2.2 2 0 0 2 2 2 0 Ras family Arf PF00025.16 gi|14601666|ref|NP_148207.1| - 0.11 11.7 0.2 0.56 9.4 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosylation factor family TetR_C_2 PF08361.6 gi|14601666|ref|NP_148207.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Ribosomal_S7 PF00177.16 gi|118431614|ref|NP_148208.2| - 1.1e-45 154.8 0.0 1.6e-45 154.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DNase-RNase PF02577.9 gi|118431615|ref|NP_148210.2| - 9.3e-09 34.6 0.1 1.2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.20 gi|14601670|ref|NP_148211.1| - 2.9e-39 133.2 0.3 3.3e-39 133.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|14601671|ref|NP_148212.1| - 6.5e-22 76.8 4.5 1.2e-14 53.6 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|14601671|ref|NP_148212.1| - 1.7e-13 50.1 3.8 8e-12 44.7 0.1 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.24 gi|14601671|ref|NP_148212.1| - 4e-10 39.1 2.6 6.1e-05 22.5 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|14601671|ref|NP_148212.1| - 1.5e-09 37.3 1.3 9.5e-05 21.9 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|14601671|ref|NP_148212.1| - 0.0072 15.9 3.3 1.7 8.4 0.1 2.8 2 0 0 2 2 2 2 KH domain DsbC_N PF10411.4 gi|14601671|ref|NP_148212.1| - 0.011 14.9 0.1 0.02 14.1 0.1 1.4 1 0 0 1 1 1 0 Disulfide bond isomerase protein N-terminus Aldedh PF00171.17 gi|14601671|ref|NP_148212.1| - 0.033 12.5 0.0 0.042 12.1 0.0 1.1 1 0 0 1 1 1 0 Aldehyde dehydrogenase family PrpR_N PF06506.6 gi|14601671|ref|NP_148212.1| - 0.075 12.4 0.2 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Propionate catabolism activator Ribosomal_L7Ae PF01248.21 gi|118431616|ref|NP_148213.2| - 7.7e-21 73.4 0.0 8.5e-21 73.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Peripla_BP_4 PF13407.1 gi|118431616|ref|NP_148213.2| - 0.1 11.9 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain RNA_pol_Rpb1_5 PF04998.12 gi|118431617|ref|NP_148214.2| - 7.5e-51 173.0 0.1 1e-50 172.5 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FhuF PF06276.7 gi|118431617|ref|NP_148214.2| - 0.013 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Ferric iron reductase FhuF-like transporter DUF4373 PF14297.1 gi|118431617|ref|NP_148214.2| - 0.1 12.9 0.4 2.2 8.6 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4373) Sigma70_r1_1 PF03979.9 gi|118431617|ref|NP_148214.2| - 0.92 9.4 5.0 1.8 8.5 0.0 3.0 3 0 0 3 3 3 0 Sigma-70 factor, region 1.1 RNA_pol_Rpb1_1 PF04997.7 gi|118431618|ref|NP_148215.2| - 1.1e-68 232.0 0.0 2.4e-67 227.5 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|118431618|ref|NP_148215.2| - 7.4e-66 221.1 0.0 1.4e-65 220.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|118431618|ref|NP_148215.2| - 1.2e-38 132.3 0.0 2.5e-38 131.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|118431618|ref|NP_148215.2| - 1.3e-30 105.2 0.0 2.9e-30 104.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|118431618|ref|NP_148215.2| - 2.3e-29 102.5 0.1 4.5e-29 101.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|118431618|ref|NP_148215.2| - 0.049 12.8 3.1 0.36 10.1 0.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain 2OG-FeII_Oxy_3 PF13640.1 gi|118431618|ref|NP_148215.2| - 0.084 13.4 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily Zn-ribbon_8 PF09723.5 gi|118431618|ref|NP_148215.2| - 2 8.4 6.9 0.62 10.0 0.0 2.8 3 0 0 3 3 3 0 Zinc ribbon domain RNA_pol_Rpb2_6 PF00562.23 gi|14601675|ref|NP_148216.1| - 1e-121 406.3 0.0 1.4e-121 405.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|14601675|ref|NP_148216.1| - 1.2e-46 158.2 0.0 1.8e-46 157.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|14601675|ref|NP_148216.1| - 1.2e-29 103.0 0.0 1.9e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|14601675|ref|NP_148216.1| - 2.1e-28 98.3 0.4 8.8e-28 96.3 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|14601675|ref|NP_148216.1| - 4e-25 87.3 0.0 8.8e-25 86.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|14601675|ref|NP_148216.1| - 8.3e-15 54.3 0.2 2.8e-14 52.6 0.1 2.0 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|14601675|ref|NP_148216.1| - 4.8e-12 45.6 1.3 1.1e-11 44.5 0.9 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.14 gi|14601676|ref|NP_148217.1| - 3.1e-27 93.9 0.1 3.8e-27 93.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Metallophos PF00149.23 gi|118431619|ref|NP_148218.2| - 9e-09 35.0 0.2 1e-07 31.5 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|118431619|ref|NP_148218.2| - 3.6e-06 26.9 0.0 1.9e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TBP PF00352.16 gi|118431620|ref|NP_148219.2| - 2.9e-68 225.2 0.8 1.6e-35 120.3 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|118431620|ref|NP_148219.2| - 6.5e-06 26.1 0.0 0.02 14.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Radical_SAM PF04055.16 gi|118431622|ref|NP_148221.2| - 7.3e-21 75.0 0.0 2.2e-20 73.4 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily zinc_ribbon_2 PF13240.1 gi|118431622|ref|NP_148221.2| - 1.9e-05 23.9 0.3 1.9e-05 23.9 0.2 2.2 2 0 0 2 2 1 1 zinc-ribbon domain Fer4_12 PF13353.1 gi|118431622|ref|NP_148221.2| - 0.00011 22.3 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.7 gi|118431622|ref|NP_148221.2| - 0.0002 20.6 3.7 0.048 12.9 0.0 2.9 3 0 0 3 3 3 2 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|118431622|ref|NP_148221.2| - 0.0056 15.8 3.9 0.0056 15.8 2.7 3.0 2 1 1 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|118431622|ref|NP_148221.2| - 0.0082 15.9 0.2 0.0082 15.9 0.1 2.7 3 1 0 3 3 3 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|118431622|ref|NP_148221.2| - 0.027 14.1 0.4 0.094 12.3 0.3 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|118431622|ref|NP_148221.2| - 0.045 13.8 6.5 0.91 9.7 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.6 gi|118431622|ref|NP_148221.2| - 0.049 13.1 1.3 6.2 6.4 0.0 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|118431622|ref|NP_148221.2| - 0.05 13.1 4.5 11 5.7 0.0 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Fer4_14 PF13394.1 gi|118431622|ref|NP_148221.2| - 0.085 12.8 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|118431622|ref|NP_148221.2| - 0.85 9.1 0.0 0.85 9.1 0.0 3.6 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Elf1 PF05129.8 gi|118431622|ref|NP_148221.2| - 6.8 6.4 8.3 12 5.7 0.0 3.5 4 0 0 4 4 4 0 Transcription elongation factor Elf1 like DUF2258 PF10015.4 gi|118431623|ref|NP_148222.2| - 1.5e-31 108.0 0.9 1.5e-31 108.0 0.6 2.4 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2258) MS_channel PF00924.13 gi|118431624|ref|NP_148223.2| - 8.7e-43 146.0 0.4 8.7e-43 146.0 0.3 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel Trep_Strep PF09605.5 gi|118431624|ref|NP_148223.2| - 0.22 11.1 7.9 0.3 10.7 5.1 1.5 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF432 PF04254.8 gi|118431625|ref|NP_148224.2| - 6.3e-31 106.8 0.0 1.1e-30 106.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) HMG-CoA_red PF00368.13 gi|14601684|ref|NP_148225.1| - 3.1e-147 490.0 0.1 3.6e-147 489.8 0.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF35_N PF12172.3 gi|118431626|ref|NP_148226.2| - 3.7e-11 42.5 6.0 3.7e-11 42.5 4.2 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|118431626|ref|NP_148226.2| - 1.6e-10 41.0 2.3 2.3e-10 40.5 1.6 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|118431626|ref|NP_148226.2| - 0.0026 17.5 0.8 0.004 16.9 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|118431626|ref|NP_148226.2| - 0.0078 15.6 3.9 0.014 14.8 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|118431626|ref|NP_148226.2| - 0.015 14.4 6.7 0.027 13.6 4.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|118431626|ref|NP_148226.2| - 0.11 12.2 0.1 0.19 11.3 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|118431626|ref|NP_148226.2| - 0.26 11.6 2.2 0.77 10.1 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2 PF00096.21 gi|118431626|ref|NP_148226.2| - 0.3 11.5 3.6 1.7 9.1 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.7 gi|118431626|ref|NP_148226.2| - 1.9 7.8 5.7 1.5 8.1 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding Thiolase_C PF02803.13 gi|118431627|ref|NP_148227.2| - 0.00042 19.7 0.2 0.00042 19.7 0.1 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain MgtC PF02308.11 gi|118431627|ref|NP_148227.2| - 0.0042 16.9 0.5 0.0082 15.9 0.4 1.4 1 0 0 1 1 1 1 MgtC family ketoacyl-synt PF00109.21 gi|118431627|ref|NP_148227.2| - 0.09 12.2 4.7 0.1 12.0 1.6 2.1 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|118431627|ref|NP_148227.2| - 0.22 11.1 5.7 0.64 9.7 0.2 2.8 2 1 1 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|118431628|ref|NP_148228.2| - 1.3e-10 41.1 0.0 2.7e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|118431628|ref|NP_148228.2| - 0.00025 20.6 0.0 0.015 14.7 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|118431628|ref|NP_148228.2| - 0.00085 18.9 1.3 0.00085 18.9 0.9 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Radical_SAM PF04055.16 gi|118431629|ref|NP_148229.2| - 2.2e-23 83.2 0.0 3.9e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|118431629|ref|NP_148229.2| - 0.18 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF4603 PF15376.1 gi|14601689|ref|NP_148230.1| - 0.18 8.9 0.0 0.21 8.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4603) Rhomboid PF01694.17 gi|118431630|ref|NP_148231.2| - 1.4e-31 109.4 21.6 1.4e-31 109.4 15.0 2.2 2 1 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|118431630|ref|NP_148231.2| - 0.0046 17.2 0.2 0.0046 17.2 0.1 1.9 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) UbiA PF01040.13 gi|14601691|ref|NP_148232.1| - 6e-41 140.3 28.5 7.8e-41 139.9 19.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family BNR_2 PF13088.1 gi|118431632|ref|NP_148235.2| - 6.7e-10 38.7 0.0 0.00039 19.8 0.0 3.0 1 1 1 3 3 3 3 BNR repeat-like domain BNR PF02012.15 gi|118431632|ref|NP_148235.2| - 2e-05 23.7 9.1 1.1 9.4 0.1 4.8 4 0 0 4 4 4 3 BNR/Asp-box repeat NPV_P10 PF05531.7 gi|118431632|ref|NP_148235.2| - 0.00042 20.5 0.7 0.0011 19.1 0.5 1.8 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Apolipoprotein PF01442.13 gi|118431632|ref|NP_148235.2| - 0.0006 19.3 0.1 0.0044 16.5 0.0 1.9 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain Gp58 PF07902.6 gi|118431632|ref|NP_148235.2| - 0.00069 17.9 4.0 0.001 17.3 2.8 1.1 1 0 0 1 1 1 1 gp58-like protein DUF4185 PF13810.1 gi|118431632|ref|NP_148235.2| - 0.0019 17.1 0.0 1.8 7.3 0.0 3.2 3 2 0 4 4 4 1 Domain of unknown function (DUF4185) Baculo_PEP_C PF04513.7 gi|118431632|ref|NP_148235.2| - 0.0023 17.7 1.5 0.0058 16.4 0.7 1.7 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Glyco_hydro_43 PF04616.9 gi|118431632|ref|NP_148235.2| - 0.01 14.9 0.2 1 8.4 0.1 2.4 2 1 0 2 2 2 0 Glycosyl hydrolases family 43 DUF1664 PF07889.7 gi|118431632|ref|NP_148235.2| - 0.059 13.1 1.6 0.15 11.8 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) EzrA PF06160.7 gi|118431632|ref|NP_148235.2| - 0.07 11.3 1.3 0.099 10.8 0.9 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA ALIX_LYPXL_bnd PF13949.1 gi|118431632|ref|NP_148235.2| - 0.076 11.9 1.7 0.12 11.2 1.2 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Reo_sigmaC PF04582.7 gi|118431632|ref|NP_148235.2| - 0.1 11.7 4.8 0.22 10.6 3.3 1.5 1 0 0 1 1 1 0 Reovirus sigma C capsid protein SF-assemblin PF06705.6 gi|118431632|ref|NP_148235.2| - 0.12 11.5 2.9 0.45 9.6 1.2 2.0 1 1 1 2 2 2 0 SF-assemblin/beta giardin DUF4631 PF15450.1 gi|118431632|ref|NP_148235.2| - 0.13 10.5 0.7 0.18 10.0 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) DUF812 PF05667.6 gi|118431632|ref|NP_148235.2| - 0.15 10.5 0.8 0.21 10.0 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF948 PF06103.6 gi|118431632|ref|NP_148235.2| - 0.22 11.4 1.1 12 5.8 0.1 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Filament PF00038.16 gi|118431632|ref|NP_148235.2| - 0.25 10.7 1.1 0.36 10.2 0.7 1.2 1 0 0 1 1 1 0 Intermediate filament protein Baculo_p24 PF05073.7 gi|118431632|ref|NP_148235.2| - 0.26 10.8 0.3 0.46 10.0 0.2 1.3 1 0 0 1 1 1 0 Baculovirus P24 capsid protein DUF3829 PF12889.2 gi|118431632|ref|NP_148235.2| - 0.3 10.2 0.4 0.51 9.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) Syntaxin PF00804.20 gi|118431632|ref|NP_148235.2| - 0.31 11.2 3.8 0.53 10.4 2.3 1.6 1 1 0 1 1 1 0 Syntaxin Phasin PF05597.6 gi|118431632|ref|NP_148235.2| - 0.35 10.6 3.8 0.89 9.3 0.3 2.3 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Bacillus_HBL PF05791.6 gi|118431632|ref|NP_148235.2| - 0.51 9.6 1.4 0.76 9.1 0.4 1.6 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Kelch_6 PF13964.1 gi|118431632|ref|NP_148235.2| - 7.5 6.9 6.0 9.5 6.5 0.0 3.6 5 0 0 5 5 2 0 Kelch motif PNP_UDP_1 PF01048.15 gi|14601697|ref|NP_148238.1| - 1.1e-47 162.0 0.0 1.2e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NinB PF05772.7 gi|14601697|ref|NP_148238.1| - 0.094 12.3 0.0 0.35 10.5 0.0 1.8 1 1 1 2 2 2 0 NinB protein Fucose_iso_C PF02952.12 gi|118431635|ref|NP_148240.2| - 1.3e-15 57.1 0.0 1.9e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Methyltransf_11 PF08241.7 gi|14601700|ref|NP_148241.1| - 8.5e-12 45.4 0.0 2.3e-11 44.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|14601700|ref|NP_148241.1| - 0.00013 21.7 0.0 0.00092 18.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|14601700|ref|NP_148241.1| - 0.0074 16.7 0.0 0.16 12.4 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|14601700|ref|NP_148241.1| - 0.017 14.2 0.0 0.052 12.6 0.0 1.9 2 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family ABC_tran PF00005.22 gi|118431637|ref|NP_148242.2| - 4.2e-38 130.7 0.0 5.6e-38 130.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431637|ref|NP_148242.2| - 3.8e-13 50.0 0.0 5.6e-07 29.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431637|ref|NP_148242.2| - 2.1e-07 30.4 0.1 0.0035 16.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|118431637|ref|NP_148242.2| - 4.8e-07 29.9 0.1 9.3e-07 28.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|118431637|ref|NP_148242.2| - 2.5e-06 26.9 0.0 4.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|118431637|ref|NP_148242.2| - 9.1e-05 22.2 0.3 0.00041 20.2 0.2 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|118431637|ref|NP_148242.2| - 0.00063 18.4 0.2 0.65 8.5 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|118431637|ref|NP_148242.2| - 0.001 19.1 0.2 0.0058 16.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|118431637|ref|NP_148242.2| - 0.0012 18.4 0.0 0.07 12.7 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.2 gi|118431637|ref|NP_148242.2| - 0.0014 18.1 0.3 0.028 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|118431637|ref|NP_148242.2| - 0.0015 17.5 0.1 0.013 14.4 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|118431637|ref|NP_148242.2| - 0.002 17.3 0.1 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|118431637|ref|NP_148242.2| - 0.0028 17.8 0.0 0.017 15.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|118431637|ref|NP_148242.2| - 0.003 17.2 0.0 0.011 15.4 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|118431637|ref|NP_148242.2| - 0.0031 17.8 0.0 0.005 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|118431637|ref|NP_148242.2| - 0.0034 16.4 0.0 0.55 9.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|118431637|ref|NP_148242.2| - 0.0043 17.8 0.1 0.012 16.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|118431637|ref|NP_148242.2| - 0.0052 15.9 0.0 0.014 14.6 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|118431637|ref|NP_148242.2| - 0.0059 16.4 0.2 0.025 14.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|118431637|ref|NP_148242.2| - 0.011 15.3 0.0 0.027 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|118431637|ref|NP_148242.2| - 0.011 15.0 0.5 0.15 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|118431637|ref|NP_148242.2| - 0.014 14.8 0.0 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|118431637|ref|NP_148242.2| - 0.021 14.5 0.0 0.036 13.7 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|118431637|ref|NP_148242.2| - 0.025 14.1 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|118431637|ref|NP_148242.2| - 0.038 14.3 0.0 0.073 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|118431637|ref|NP_148242.2| - 0.043 12.5 0.0 0.055 12.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_14 PF13173.1 gi|118431637|ref|NP_148242.2| - 0.062 13.2 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|118431637|ref|NP_148242.2| - 0.062 12.7 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|118431637|ref|NP_148242.2| - 0.071 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|118431637|ref|NP_148242.2| - 0.084 12.8 0.1 0.18 11.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|118431637|ref|NP_148242.2| - 0.093 12.6 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|118431637|ref|NP_148242.2| - 0.099 12.1 0.1 0.29 10.5 0.1 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|118431637|ref|NP_148242.2| - 0.1 12.3 0.1 0.39 10.4 0.0 1.9 2 1 0 2 2 2 0 NTPase DUF815 PF05673.8 gi|118431637|ref|NP_148242.2| - 0.1 11.4 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|118431637|ref|NP_148242.2| - 0.12 12.5 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Miro PF08477.8 gi|118431637|ref|NP_148242.2| - 0.12 12.8 0.1 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein BPD_transp_1 PF00528.17 gi|14601702|ref|NP_148243.1| - 9.8e-18 64.3 11.6 9.8e-18 64.3 8.1 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|118431638|ref|NP_148244.2| - 2.4e-52 177.4 0.2 2.9e-52 177.1 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 YhfZ_C PF14503.1 gi|118431638|ref|NP_148244.2| - 0.0032 16.8 0.5 1.6 8.0 0.0 2.2 1 1 1 2 2 2 2 YhfZ C-terminal domain Phosphonate-bd PF12974.2 gi|118431638|ref|NP_148244.2| - 0.0035 16.7 0.3 0.054 12.8 0.2 2.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|118431638|ref|NP_148244.2| - 0.0057 16.2 1.2 0.59 9.6 0.1 2.2 1 1 0 2 2 2 2 NMT1/THI5 like DUF2613 PF11021.3 gi|118431638|ref|NP_148244.2| - 0.046 13.4 2.0 0.088 12.5 1.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) ACT_7 PF13840.1 gi|14601704|ref|NP_148245.1| - 2.3e-12 46.2 1.7 5.3e-09 35.4 0.1 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|14601704|ref|NP_148245.1| - 5.1e-05 22.6 1.8 0.0017 17.8 0.0 3.1 3 0 0 3 3 3 1 ACT domain DUF2791 PF10923.3 gi|14601704|ref|NP_148245.1| - 0.012 14.1 0.1 0.03 12.9 0.0 1.6 1 1 1 2 2 2 0 P-loop Domain of unknown function (DUF2791) DUF3573 PF12097.3 gi|14601704|ref|NP_148245.1| - 0.026 13.1 0.1 0.029 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) DUF503 PF04456.7 gi|14601704|ref|NP_148245.1| - 0.08 12.5 0.9 3 7.4 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF503) DUF3356 PF11836.3 gi|14601704|ref|NP_148245.1| - 0.11 12.3 0.2 1.5 8.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3356) DUF3509 PF12021.3 gi|14601704|ref|NP_148245.1| - 0.11 12.2 0.5 1.4 8.7 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) T2SF PF00482.18 gi|118431639|ref|NP_148246.2| - 2.1e-17 63.2 8.5 2.2e-08 34.0 0.0 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Trp_oprn_chp PF09534.5 gi|118431639|ref|NP_148246.2| - 0.011 15.3 1.3 0.18 11.3 0.5 2.6 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) T2SE PF00437.15 gi|118431640|ref|NP_148247.2| - 1.3e-48 165.2 0.0 1.9e-48 164.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|118431640|ref|NP_148247.2| - 2.2e-06 27.1 0.0 4e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|118431640|ref|NP_148247.2| - 0.00089 19.5 0.0 0.0039 17.4 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|118431640|ref|NP_148247.2| - 0.053 13.6 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|118431640|ref|NP_148247.2| - 0.057 12.8 0.1 0.25 10.7 0.0 2.1 3 0 0 3 3 3 0 FtsK/SpoIIIE family DEAD PF00270.24 gi|118431640|ref|NP_148247.2| - 0.13 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|118431640|ref|NP_148247.2| - 0.18 12.1 0.2 0.39 11.0 0.2 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|14601707|ref|NP_148248.1| - 5.3e-15 55.1 0.0 6.3e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.1 gi|14601707|ref|NP_148248.1| - 0.00016 21.8 0.0 0.00033 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|14601707|ref|NP_148248.1| - 0.007 16.6 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF835 PF05763.7 gi|14601707|ref|NP_148248.1| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_19 PF13245.1 gi|14601707|ref|NP_148248.1| - 0.012 15.3 0.2 0.15 11.7 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain RecA PF00154.16 gi|14601707|ref|NP_148248.1| - 0.015 14.3 0.1 0.024 13.6 0.1 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein Arch_ATPase PF01637.13 gi|14601707|ref|NP_148248.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|14601707|ref|NP_148248.1| - 0.033 13.6 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|14601707|ref|NP_148248.1| - 0.046 13.6 0.2 0.073 13.0 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain Rad51 PF08423.6 gi|14601707|ref|NP_148248.1| - 0.085 11.7 0.0 0.17 10.7 0.0 1.6 1 1 0 1 1 1 0 Rad51 AAA_17 PF13207.1 gi|14601707|ref|NP_148248.1| - 0.091 13.5 0.1 0.14 12.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|14601707|ref|NP_148248.1| - 0.095 12.0 0.1 0.23 10.8 0.1 1.8 1 1 1 2 2 2 0 AAA domain PAXNEB PF05625.6 gi|14601707|ref|NP_148248.1| - 0.11 11.2 0.3 0.36 9.5 0.0 1.7 2 0 0 2 2 2 0 PAXNEB protein AAA_14 PF13173.1 gi|14601707|ref|NP_148248.1| - 0.14 12.0 0.1 0.67 9.8 0.0 2.2 1 1 0 1 1 1 0 AAA domain VirC2 PF07181.6 gi|14601707|ref|NP_148248.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 VirC2 protein AAA_33 PF13671.1 gi|14601707|ref|NP_148248.1| - 0.15 11.9 0.1 0.29 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|14601707|ref|NP_148248.1| - 0.16 11.6 0.2 0.23 11.1 0.2 1.5 1 1 0 1 1 1 0 NACHT domain Arch_flagellin PF01917.11 gi|14601709|ref|NP_148250.1| - 4.4e-10 39.4 2.5 2.3e-09 37.1 1.8 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin MTP18 PF10558.4 gi|14601709|ref|NP_148250.1| - 0.079 12.8 0.2 0.099 12.5 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial 18 KDa protein (MTP18) SinI PF08671.5 gi|118431641|ref|YP_874917.1| - 0.0025 17.1 0.2 0.019 14.4 0.0 2.1 2 0 0 2 2 2 1 Anti-repressor SinI MOZART2 PF12926.2 gi|118431641|ref|YP_874917.1| - 0.098 12.2 0.0 6.5 6.4 0.0 2.3 2 0 0 2 2 2 0 Mitotic-spindle organizing gamma-tubulin ring associated Arch_flagellin PF01917.11 gi|14601712|ref|NP_148253.1| - 7.4e-28 97.4 1.6 1.2e-27 96.7 1.1 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin DUF1469 PF07332.6 gi|14601712|ref|NP_148253.1| - 0.012 15.3 1.7 0.019 14.6 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Arch_flagellin PF01917.11 gi|14601713|ref|NP_148254.1| - 1.5e-27 96.4 0.1 2e-27 96.0 0.1 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1469 PF07332.6 gi|14601713|ref|NP_148254.1| - 0.026 14.2 2.5 0.04 13.6 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) ABC2_membrane_3 PF12698.2 gi|118431643|ref|NP_148256.2| - 2.3 7.1 20.6 3.1 6.7 14.3 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|118431644|ref|NP_148257.2| - 3.1e-25 89.0 0.0 4.4e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431644|ref|NP_148257.2| - 1.6e-10 41.4 0.6 8.2e-05 22.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|118431644|ref|NP_148257.2| - 5.6e-05 22.0 0.2 8.5e-05 21.4 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|118431644|ref|NP_148257.2| - 0.00039 19.9 0.1 0.81 9.0 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_33 PF13671.1 gi|118431644|ref|NP_148257.2| - 0.002 17.9 0.0 0.0091 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|118431644|ref|NP_148257.2| - 0.0031 17.6 0.0 0.024 14.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|118431644|ref|NP_148257.2| - 0.0068 15.9 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|118431644|ref|NP_148257.2| - 0.012 15.6 1.4 0.026 14.5 0.8 1.9 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|118431644|ref|NP_148257.2| - 0.015 14.9 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|118431644|ref|NP_148257.2| - 0.027 13.9 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|118431644|ref|NP_148257.2| - 0.038 14.3 0.0 0.057 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|118431644|ref|NP_148257.2| - 0.044 13.3 0.1 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|118431644|ref|NP_148257.2| - 0.06 12.7 0.8 0.26 10.6 0.2 2.4 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|118431644|ref|NP_148257.2| - 0.065 12.6 0.2 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|118431644|ref|NP_148257.2| - 0.12 11.4 0.1 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|118431644|ref|NP_148257.2| - 0.18 11.0 0.0 1.8 7.7 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|118431644|ref|NP_148257.2| - 0.81 9.4 5.9 0.25 11.0 0.3 2.7 3 0 0 3 3 2 0 Part of AAA domain MFS_1 PF07690.11 gi|118431645|ref|NP_148258.2| - 2.4e-23 82.4 59.4 3.2e-17 62.2 17.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|118431645|ref|NP_148258.2| - 8e-05 20.9 29.3 0.067 11.2 0.2 3.2 3 0 0 3 3 3 3 Transmembrane secretion effector Sugar_tr PF00083.19 gi|118431645|ref|NP_148258.2| - 0.00049 18.8 1.0 0.00049 18.8 0.7 3.3 2 2 0 3 3 3 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|118431645|ref|NP_148258.2| - 0.0046 15.5 0.7 0.025 13.1 0.0 2.1 2 1 1 3 3 3 2 LacY proton/sugar symporter Peptidase_M20 PF01546.23 gi|14601719|ref|NP_148260.1| - 1.4e-36 125.7 0.0 1.8e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 LAGLIDADG_1 PF00961.14 gi|118431646|ref|YP_874918.1| - 4.1e-10 40.1 0.0 1.1e-09 38.7 0.0 1.6 2 0 0 2 2 2 1 LAGLIDADG endonuclease Flagellar_rod PF05149.7 gi|118431646|ref|YP_874918.1| - 0.075 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Paraflagellar rod protein LAGLIDADG_3 PF14528.1 gi|118431647|ref|NP_148261.2| - 4.3e-17 62.1 2.8 3.9e-10 39.8 0.0 2.1 2 0 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_1 PF00961.14 gi|118431647|ref|NP_148261.2| - 0.0098 16.4 2.0 9.3 6.8 0.0 3.1 2 1 1 3 3 3 2 LAGLIDADG endonuclease SPOR PF05036.8 gi|118431647|ref|NP_148261.2| - 0.11 12.6 0.6 3.1 8.0 0.2 2.4 2 0 0 2 2 2 0 Sporulation related domain SNARE_assoc PF09335.6 gi|14601723|ref|NP_148264.1| - 9e-07 29.1 8.9 9e-07 29.1 6.2 2.2 2 1 0 2 2 2 1 SNARE associated Golgi protein PPR_3 PF13812.1 gi|14601723|ref|NP_148264.1| - 0.073 13.3 2.9 0.37 11.2 0.0 3.0 3 0 0 3 3 3 0 Pentatricopeptide repeat domain Phage_holin_5 PF06946.6 gi|14601723|ref|NP_148264.1| - 0.65 10.2 4.4 1.5 9.0 0.2 2.4 2 0 0 2 2 2 0 Phage holin ABC2_membrane_3 PF12698.2 gi|118431648|ref|NP_148265.2| - 3.7e-24 85.4 9.9 6.4e-24 84.6 6.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|118431648|ref|NP_148265.2| - 8.9e-20 70.6 15.9 1.3e-19 70.1 11.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|118431648|ref|NP_148265.2| - 1.7e-10 40.4 4.2 2.7e-10 39.8 2.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|118431648|ref|NP_148265.2| - 3.1e-10 39.5 11.1 3.1e-10 39.5 7.7 2.3 3 0 0 3 3 3 1 ABC-2 type transporter DUF1182 PF06681.8 gi|118431648|ref|NP_148265.2| - 0.062 12.4 2.9 0.11 11.7 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1182) ABC_tran PF00005.22 gi|118431649|ref|NP_148266.2| - 1.1e-22 80.8 0.0 1.5e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431649|ref|NP_148266.2| - 4.6e-11 43.2 0.0 4.1e-09 36.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|118431649|ref|NP_148266.2| - 0.01 15.4 0.1 0.023 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|118431649|ref|NP_148266.2| - 0.032 13.9 0.7 0.71 9.6 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain SRP54 PF00448.17 gi|118431649|ref|NP_148266.2| - 0.04 13.3 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|118431649|ref|NP_148266.2| - 0.041 13.1 0.0 2.9 7.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|118431649|ref|NP_148266.2| - 0.059 11.8 0.0 6.8 5.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|118431649|ref|NP_148266.2| - 0.12 11.7 0.0 0.32 10.3 0.0 1.8 1 1 1 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|118431649|ref|NP_148266.2| - 0.13 11.7 0.0 0.28 10.6 0.0 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|118431650|ref|YP_874919.1| - 0.021 14.6 0.2 0.028 14.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF137 PF02006.11 gi|118431651|ref|NP_148267.2| - 1.9e-67 226.1 0.1 2.3e-67 225.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 GHMP_kinases_N PF00288.21 gi|118431652|ref|NP_148268.2| - 1.9 8.5 6.7 8.2 6.5 3.9 2.3 1 1 1 2 2 2 0 GHMP kinases N terminal domain SIS PF01380.17 gi|118431653|ref|NP_148269.2| - 2e-18 66.2 0.0 3.5e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|118431653|ref|NP_148269.2| - 7.2e-12 45.1 1.0 4.8e-08 32.7 0.4 2.2 1 1 1 2 2 2 2 SIS domain AlaDh_PNT_C PF01262.16 gi|118431653|ref|NP_148269.2| - 0.05 13.1 1.2 2.1 7.8 0.2 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transf_2 PF01909.18 gi|118431654|ref|NP_148272.2| - 1.8e-05 24.9 0.0 3.3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Spc7_N PF15402.1 gi|14601736|ref|NP_148277.1| - 0.011 13.8 0.8 0.012 13.6 0.6 1.0 1 0 0 1 1 1 0 N-terminus of kinetochore NMS complex subunit Spc7 Zip PF02535.17 gi|14601736|ref|NP_148277.1| - 0.019 13.9 7.1 0.023 13.7 4.9 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Innate_immun PF12782.2 gi|14601736|ref|NP_148277.1| - 0.021 14.0 4.3 0.019 14.2 2.9 1.1 1 0 0 1 1 1 0 Invertebrate innate immunity transcript family DUF2611 PF11022.3 gi|14601736|ref|NP_148277.1| - 0.11 12.5 1.2 3.9 7.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2611) DUF1796 PF08795.5 gi|14601736|ref|NP_148277.1| - 0.13 11.8 1.5 0.15 11.7 1.1 1.1 1 0 0 1 1 1 0 Putative papain-like cysteine peptidase (DUF1796) Baculo_gp64 PF03273.8 gi|14601736|ref|NP_148277.1| - 0.86 7.7 3.8 0.95 7.5 2.6 1.0 1 0 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family SelP_N PF04592.9 gi|14601736|ref|NP_148277.1| - 2.3 7.5 9.5 3 7.1 6.6 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region IncA PF04156.9 gi|14601736|ref|NP_148277.1| - 3 7.4 7.5 5.8 6.4 5.2 1.4 1 1 0 1 1 1 0 IncA protein CPSF73-100_C PF11718.3 gi|14601736|ref|NP_148277.1| - 3.7 6.8 6.9 4.6 6.5 4.8 1.3 1 1 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term zf-ZPR1 PF03367.8 gi|118431656|ref|NP_148278.2| - 2.6e-33 114.4 0.0 3.4e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zf-ribbon_3 PF13248.1 gi|118431656|ref|NP_148278.2| - 0.0043 16.2 0.8 0.42 9.8 0.0 2.6 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|118431656|ref|NP_148278.2| - 0.02 14.8 0.5 0.77 9.7 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|118431656|ref|NP_148278.2| - 0.032 14.1 1.3 6.4 6.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|118431656|ref|NP_148278.2| - 0.046 13.2 0.5 10 5.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|118431656|ref|NP_148278.2| - 0.089 12.2 2.8 4.6 6.8 0.2 2.7 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|118431656|ref|NP_148278.2| - 0.1 12.4 0.3 0.46 10.3 0.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|118431656|ref|NP_148278.2| - 0.35 10.5 2.9 0.41 10.3 0.2 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|118431656|ref|NP_148278.2| - 2.8 7.6 6.0 8.4 6.1 0.1 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 HSP20 PF00011.16 gi|118431657|ref|NP_148279.2| - 3.7e-11 42.7 3.0 1.3e-09 37.8 2.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|118431657|ref|NP_148279.2| - 2.1e-07 31.3 0.5 3.2e-07 30.7 0.4 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|118431657|ref|NP_148279.2| - 7.4e-06 25.7 0.0 8.8e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 GvpH HlyD_3 PF13437.1 gi|118431657|ref|NP_148279.2| - 0.0053 17.0 0.3 0.0088 16.3 0.2 1.4 1 0 0 1 1 1 1 HlyD family secretion protein DUF3014 PF11219.3 gi|118431657|ref|NP_148279.2| - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3014) DPCD PF14913.1 gi|118431657|ref|NP_148279.2| - 0.078 12.0 0.1 0.078 12.0 0.1 1.4 2 0 0 2 2 2 0 DPCD protein family Cep57_MT_bd PF06657.8 gi|118431657|ref|NP_148279.2| - 0.084 12.8 0.5 0.45 10.4 0.0 2.1 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 bZIP_1 PF00170.16 gi|118431657|ref|NP_148279.2| - 0.093 12.6 0.2 0.25 11.3 0.1 1.7 1 0 0 1 1 1 0 bZIP transcription factor IncA PF04156.9 gi|118431657|ref|NP_148279.2| - 0.22 11.1 0.5 0.39 10.2 0.4 1.3 1 0 0 1 1 1 0 IncA protein DAO PF01266.19 gi|118431658|ref|NP_148281.2| - 1.6e-09 37.1 0.1 0.0014 17.6 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|118431658|ref|NP_148281.2| - 6.3e-06 25.4 0.2 0.008 15.2 0.0 3.0 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|118431658|ref|NP_148281.2| - 3.8e-05 23.6 0.0 4.8e-05 23.3 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|118431658|ref|NP_148281.2| - 5.1e-05 22.2 0.3 0.17 10.7 0.0 2.8 3 1 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|118431658|ref|NP_148281.2| - 0.0015 17.6 0.2 0.0095 15.0 0.1 2.2 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.9 gi|118431658|ref|NP_148281.2| - 0.002 16.8 0.0 0.06 11.9 0.0 2.4 2 1 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|118431658|ref|NP_148281.2| - 0.0039 16.1 0.2 0.048 12.5 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|118431658|ref|NP_148281.2| - 0.0077 15.3 0.2 0.07 12.2 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|118431658|ref|NP_148281.2| - 0.038 13.9 0.2 0.31 11.0 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|118431658|ref|NP_148281.2| - 0.057 12.2 0.0 0.088 11.6 0.0 1.3 1 1 0 1 1 1 0 Glucose inhibited division protein A Acetyltransf_1 PF00583.19 gi|14601741|ref|NP_148282.1| - 1.1e-20 73.4 0.0 1.6e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|14601741|ref|NP_148282.1| - 1.1e-11 44.2 0.0 2e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|14601741|ref|NP_148282.1| - 3.5e-11 43.2 0.0 8.3e-10 38.8 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|14601741|ref|NP_148282.1| - 4e-11 42.9 0.0 1.5e-10 41.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|14601741|ref|NP_148282.1| - 5.5e-11 42.5 0.0 1.3e-10 41.3 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|14601741|ref|NP_148282.1| - 2.8e-08 33.8 0.0 1.8e-06 28.0 0.0 2.3 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|14601741|ref|NP_148282.1| - 3.9e-07 30.3 0.0 5.9e-07 29.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|14601741|ref|NP_148282.1| - 2.8e-06 27.2 0.1 8.8e-05 22.3 0.0 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|14601741|ref|NP_148282.1| - 0.0098 15.4 0.1 0.014 14.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|14601741|ref|NP_148282.1| - 0.016 15.0 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MotA_activ PF09114.5 gi|14601743|ref|NP_148284.1| - 0.041 13.6 0.3 1.8 8.3 0.0 2.7 2 0 0 2 2 2 0 Transcription factor MotA, activation domain RRM_6 PF14259.1 gi|14601743|ref|NP_148284.1| - 0.058 13.3 1.1 8 6.5 0.0 3.8 4 1 0 4 4 4 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Gal4_dimer PF03902.8 gi|14601743|ref|NP_148284.1| - 0.14 12.1 0.4 0.72 9.8 0.1 2.3 3 0 0 3 3 3 0 Gal4-like dimerisation domain zf-C2H2_4 PF13894.1 gi|118431660|ref|NP_148286.2| - 3.3e-05 23.9 0.1 4.8e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|118431660|ref|NP_148286.2| - 0.0032 17.7 0.0 0.0047 17.1 0.0 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.3 gi|118431660|ref|NP_148286.2| - 0.045 13.9 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|118431660|ref|NP_148286.2| - 0.1 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger of C2H2 type NAD_synthase PF02540.12 gi|118431661|ref|NP_148287.2| - 9e-75 250.6 0.0 1e-74 250.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|118431661|ref|NP_148287.2| - 0.00086 17.9 0.0 0.012 14.1 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|118431661|ref|NP_148287.2| - 0.0047 16.2 0.0 0.024 13.8 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|118431661|ref|NP_148287.2| - 0.044 13.2 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DFP PF04127.10 gi|118431662|ref|NP_148288.2| - 8.9e-49 165.6 0.0 3.2e-47 160.5 0.0 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|118431662|ref|NP_148288.2| - 9.6e-28 96.4 0.6 8.2e-27 93.4 0.1 2.1 2 0 0 2 2 2 1 Flavoprotein Aldo_ket_red PF00248.16 gi|14601748|ref|NP_148289.1| - 4.2e-62 209.5 0.0 4.8e-62 209.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SHMT PF00464.14 gi|118431663|ref|NP_148290.2| - 3.6e-65 219.8 0.0 5.4e-65 219.3 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|118431663|ref|NP_148290.2| - 7.1e-09 35.2 0.0 9.8e-09 34.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|118431663|ref|NP_148290.2| - 7.5e-08 31.6 0.0 3.6e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|118431663|ref|NP_148290.2| - 0.00096 18.2 0.1 0.0016 17.5 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Fe-ADH PF00465.14 gi|118431664|ref|NP_148291.2| - 7.5e-101 337.3 0.8 8.5e-101 337.2 0.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|118431664|ref|NP_148291.2| - 3e-24 85.6 3.0 2.4e-12 46.7 0.7 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|118431664|ref|NP_148291.2| - 0.0015 17.5 3.5 0.41 9.5 0.2 2.5 2 1 0 2 2 2 2 3-dehydroquinate synthase SCP2 PF02036.12 gi|118431665|ref|NP_148292.2| - 1.4e-18 67.0 0.0 1.7e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family DUF3198 PF11433.3 gi|118431666|ref|NP_148293.2| - 0.13 12.1 0.4 0.47 10.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3198) Peptidase_M50 PF02163.17 gi|118431667|ref|NP_148295.2| - 3.2e-20 71.8 9.1 6.7e-20 70.8 6.3 1.4 1 1 0 1 1 1 1 Peptidase family M50 AA_kinase PF00696.23 gi|14601755|ref|NP_148296.1| - 3.7e-27 95.4 0.0 4.2e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family cobW PF02492.14 gi|118431668|ref|NP_148297.2| - 4.8e-06 26.1 0.0 1.5e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|118431668|ref|NP_148297.2| - 5.6e-05 22.6 1.6 0.00054 19.4 0.1 2.4 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|118431668|ref|NP_148297.2| - 0.0063 16.2 0.0 0.017 14.8 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|118431668|ref|NP_148297.2| - 0.014 14.9 0.2 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|118431668|ref|NP_148297.2| - 0.038 14.8 0.0 0.11 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|118431668|ref|NP_148297.2| - 0.048 12.7 0.1 0.094 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.13 gi|118431668|ref|NP_148297.2| - 0.078 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_26 PF13500.1 gi|118431668|ref|NP_148297.2| - 0.091 12.3 0.7 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Acyl-CoA_dh_2 PF08028.6 gi|118431670|ref|NP_148299.2| - 0.17 12.0 0.1 0.17 12.0 0.1 1.7 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain tRNA-synt_2b PF00587.20 gi|118431671|ref|NP_148300.2| - 2.2e-33 115.2 0.0 4e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|118431671|ref|NP_148300.2| - 1.7e-20 73.0 5.7 3.6e-20 71.9 4.0 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain CHD5 PF04420.9 gi|118431671|ref|NP_148300.2| - 0.17 11.5 0.4 0.84 9.2 0.0 2.2 2 0 0 2 2 2 0 CHD5-like protein APG6 PF04111.7 gi|118431671|ref|NP_148300.2| - 0.25 10.3 2.9 0.42 9.6 2.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|118431671|ref|NP_148300.2| - 0.81 9.2 9.1 11 5.5 0.0 3.7 4 0 0 4 4 4 0 Septum formation initiator DUF2205 PF10224.4 gi|118431671|ref|NP_148300.2| - 1.8 8.1 7.2 2.5 7.7 3.5 2.3 3 0 0 3 3 3 0 Predicted coiled-coil protein (DUF2205) DUF59 PF01883.14 gi|118431673|ref|NP_148302.2| - 7.1e-17 61.1 0.9 1.1e-16 60.5 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF59 DUF3040 PF11239.3 gi|118431674|ref|YP_874920.1| - 0.022 14.7 5.6 0.022 14.7 3.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) UPF0104 PF03706.8 gi|118431674|ref|YP_874920.1| - 0.049 12.9 5.0 0.051 12.8 3.5 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF2530 PF10745.4 gi|118431674|ref|YP_874920.1| - 0.095 12.6 4.4 0.13 12.2 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) CD47 PF04549.9 gi|118431674|ref|YP_874920.1| - 0.13 12.2 1.1 0.16 11.9 0.8 1.1 1 0 0 1 1 1 0 CD47 transmembrane region Phageshock_PspG PF09583.5 gi|118431674|ref|YP_874920.1| - 1.2 9.1 8.0 1.7 8.7 5.6 1.3 1 1 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) O-antigen_lig PF13425.1 gi|118431674|ref|YP_874920.1| - 2 8.4 5.1 2.5 8.1 3.5 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF1634 PF07843.6 gi|118431674|ref|YP_874920.1| - 5.6 6.6 8.7 1.2 8.7 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1634) MoCF_biosynth PF00994.19 gi|118431675|ref|NP_148303.2| - 9e-38 128.9 0.0 1.2e-37 128.4 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Acetyltransf_1 PF00583.19 gi|118431676|ref|NP_148306.2| - 4.7e-11 42.5 0.5 9e-11 41.6 0.4 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|118431676|ref|NP_148306.2| - 1.3e-09 37.6 0.1 2.1e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|118431676|ref|NP_148306.2| - 9.5e-08 32.1 0.6 1.6e-07 31.4 0.2 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|118431676|ref|NP_148306.2| - 1.6e-07 31.3 0.1 7e-07 29.3 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|118431676|ref|NP_148306.2| - 0.0012 18.7 0.0 0.0024 17.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|118431676|ref|NP_148306.2| - 0.0049 16.7 0.3 0.0078 16.0 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|118431676|ref|NP_148306.2| - 0.024 14.5 0.1 0.074 12.9 0.0 1.8 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|118431676|ref|NP_148306.2| - 0.025 14.7 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DBD_Tnp_Mut PF03108.10 gi|118431677|ref|YP_874921.1| - 0.089 12.3 0.3 0.17 11.5 0.2 1.5 1 0 0 1 1 1 0 MuDR family transposase CTP_transf_2 PF01467.21 gi|118431679|ref|NP_148308.2| - 2.6e-11 43.8 0.0 3.5e-11 43.4 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase eRF1_2 PF03464.10 gi|118431680|ref|NP_148309.2| - 1.2e-38 132.4 0.3 2.1e-38 131.6 0.2 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|118431680|ref|NP_148309.2| - 2.4e-24 85.7 2.7 2.1e-23 82.7 0.3 3.0 3 1 0 3 3 3 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|118431680|ref|NP_148309.2| - 6.8e-19 67.7 0.0 2e-18 66.2 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 1 SpoU_sub_bind PF08032.7 gi|118431680|ref|NP_148309.2| - 1.8e-05 24.7 0.1 0.00023 21.2 0.1 2.7 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding Clr5 PF14420.1 gi|118431680|ref|NP_148309.2| - 0.007 16.2 0.0 0.018 14.9 0.0 1.7 1 0 0 1 1 1 1 Clr5 domain ATP-synt_F PF01990.12 gi|118431680|ref|NP_148309.2| - 0.11 12.9 0.1 16 5.9 0.0 2.5 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit Thioredoxin_3 PF13192.1 gi|14601769|ref|NP_148310.1| - 7.9e-05 22.3 0.2 0.00011 21.9 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.6 gi|14601769|ref|NP_148310.1| - 0.013 15.6 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD PEP-utilizers PF00391.18 gi|14601769|ref|NP_148310.1| - 0.052 13.1 0.1 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain OTCace PF00185.19 gi|118431681|ref|NP_148311.2| - 4.6e-53 179.3 0.0 1.2e-52 177.9 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|118431681|ref|NP_148311.2| - 2.1e-48 163.5 0.0 3.3e-48 162.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HTH_IclR PF09339.5 gi|118431682|ref|NP_148312.2| - 0.012 15.1 1.9 0.031 13.8 1.3 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|118431682|ref|NP_148312.2| - 0.016 15.0 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.11 gi|118431682|ref|NP_148312.2| - 0.042 13.9 0.5 0.066 13.2 0.4 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_45 PF14947.1 gi|118431683|ref|NP_148313.2| - 0.0014 18.3 0.1 0.051 13.3 0.0 3.2 3 1 1 4 4 4 1 Winged helix-turn-helix TrmB PF01978.14 gi|118431683|ref|NP_148313.2| - 0.0099 15.5 0.1 1.1 9.0 0.0 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|118431683|ref|NP_148313.2| - 0.019 14.7 0.0 0.06 13.1 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|118431683|ref|NP_148313.2| - 0.024 14.2 0.1 0.061 12.9 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|118431683|ref|NP_148313.2| - 0.033 13.8 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF4096 PF13340.1 gi|118431683|ref|NP_148313.2| - 0.035 13.9 0.2 0.15 11.8 0.1 2.1 2 0 0 2 2 2 0 Putative transposase of IS4/5 family (DUF4096) Med31 PF05669.7 gi|118431683|ref|NP_148313.2| - 0.06 13.0 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 SOH1 DED PF01335.16 gi|118431683|ref|NP_148313.2| - 0.083 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Death effector domain HTH_29 PF13551.1 gi|118431683|ref|NP_148313.2| - 0.11 12.6 2.8 3.9 7.6 0.0 3.3 2 1 1 3 3 3 0 Winged helix-turn helix PrgH PF09480.5 gi|118431683|ref|NP_148313.2| - 0.12 11.2 0.0 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) HTH_5 PF01022.15 gi|118431683|ref|NP_148313.2| - 0.12 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF650 PF04894.7 gi|14601773|ref|NP_148314.1| - 6.3e-93 311.1 0.0 7.7e-93 310.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|14601773|ref|NP_148314.1| - 2.1e-27 94.8 0.0 3.8e-27 94.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) TrkA_C PF02080.16 gi|14601774|ref|NP_148315.1| - 4e-11 42.3 0.6 1.6e-05 24.3 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|14601774|ref|NP_148315.1| - 1.1e-06 29.0 1.7 0.0054 17.1 0.1 2.4 2 0 0 2 2 2 2 PhoU domain DUF2122 PF09895.4 gi|118431684|ref|NP_148317.2| - 7.1e-33 112.9 0.0 9.8e-33 112.5 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_methylase PF00145.12 gi|14601777|ref|NP_148318.1| - 7.4e-44 150.2 0.0 3.7e-28 98.6 0.0 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|14601777|ref|NP_148318.1| - 0.006 16.5 0.2 0.012 15.6 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|14601777|ref|NP_148318.1| - 0.028 13.9 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TF_Zn_Ribbon PF08271.7 gi|118431685|ref|NP_148319.2| - 1.8e-09 36.7 0.8 3.2e-09 35.9 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIE_alpha PF02002.12 gi|118431685|ref|NP_148319.2| - 4.6e-09 35.7 0.0 8.7e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit zf-ribbon_3 PF13248.1 gi|118431685|ref|NP_148319.2| - 5.6e-05 22.2 1.9 0.17 11.1 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|118431685|ref|NP_148319.2| - 0.00015 21.0 1.1 0.00025 20.3 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|118431685|ref|NP_148319.2| - 0.00089 18.8 0.6 1.1 9.0 0.0 2.5 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS zinc_ribbon_5 PF13719.1 gi|118431685|ref|NP_148319.2| - 0.0023 17.4 2.0 0.01 15.3 1.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|118431685|ref|NP_148319.2| - 0.0023 17.5 2.0 0.011 15.4 1.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain LcrV PF04792.7 gi|118431685|ref|NP_148319.2| - 0.0031 16.6 0.0 0.0043 16.1 0.0 1.2 1 0 0 1 1 1 1 V antigen (LcrV) protein HypA PF01155.14 gi|118431685|ref|NP_148319.2| - 0.008 15.8 0.1 0.021 14.5 0.0 1.8 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family RNA_pol_Rpc34 PF05158.7 gi|118431685|ref|NP_148319.2| - 0.0084 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit Zn-ribbon_8 PF09723.5 gi|118431685|ref|NP_148319.2| - 0.0086 16.0 0.4 5.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-Di19 PF05605.7 gi|118431685|ref|NP_148319.2| - 0.0098 15.9 0.2 4.6 7.4 0.0 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|118431685|ref|NP_148319.2| - 0.012 15.3 0.8 0.025 14.3 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|118431685|ref|NP_148319.2| - 0.018 14.6 2.1 0.079 12.6 1.5 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.1 gi|118431685|ref|NP_148319.2| - 0.025 14.4 3.3 2.3 8.1 0.1 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RING_3 PF14369.1 gi|118431685|ref|NP_148319.2| - 0.03 14.3 0.7 3 7.9 0.0 2.4 2 0 0 2 2 2 0 zinc-finger zf-HIT PF04438.11 gi|118431685|ref|NP_148319.2| - 0.031 13.9 5.3 0.75 9.4 1.8 2.2 2 0 0 2 2 2 0 HIT zinc finger Rrf2 PF02082.15 gi|118431685|ref|NP_148319.2| - 0.034 14.2 0.0 0.1 12.7 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator Zn_Tnp_IS1595 PF12760.2 gi|118431685|ref|NP_148319.2| - 0.035 13.9 4.4 2.3 8.0 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TrmB PF01978.14 gi|118431685|ref|NP_148319.2| - 0.051 13.2 0.2 9.3 6.0 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB IBR PF01485.16 gi|118431685|ref|NP_148319.2| - 0.053 13.3 0.1 0.085 12.7 0.1 1.3 1 0 0 1 1 1 0 IBR domain zf-NADH-PPase PF09297.6 gi|118431685|ref|NP_148319.2| - 0.063 12.7 1.3 5.8 6.5 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|118431685|ref|NP_148319.2| - 0.077 12.5 0.9 6.6 6.3 0.0 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CSL PF05207.8 gi|118431685|ref|NP_148319.2| - 0.095 12.2 4.6 0.57 9.7 3.2 2.1 1 1 0 1 1 1 0 CSL zinc finger Rad50_zn_hook PF04423.9 gi|118431685|ref|NP_148319.2| - 0.11 12.0 1.3 0.3 10.5 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-ISL3 PF14690.1 gi|118431685|ref|NP_148319.2| - 0.11 12.5 4.5 5 7.2 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF4224 PF13986.1 gi|118431685|ref|NP_148319.2| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) zf-C2H2_4 PF13894.1 gi|118431685|ref|NP_148319.2| - 0.12 12.8 1.4 13 6.3 0.3 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger Elf1 PF05129.8 gi|118431685|ref|NP_148319.2| - 0.12 12.1 1.8 4.5 7.0 0.0 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2_6 PF13912.1 gi|118431685|ref|NP_148319.2| - 0.13 12.2 3.1 3.2 7.8 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Nairovirus_M PF07948.6 gi|118431685|ref|NP_148319.2| - 0.13 10.3 0.1 0.17 9.9 0.1 1.1 1 0 0 1 1 1 0 Nairovirus M polyprotein-like Ogr_Delta PF04606.7 gi|118431685|ref|NP_148319.2| - 0.13 11.9 1.0 5.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-DNL PF05180.7 gi|118431685|ref|NP_148319.2| - 0.16 11.7 0.2 12 5.7 0.0 2.3 2 0 0 2 2 2 0 DNL zinc finger Mut7-C PF01927.11 gi|118431685|ref|NP_148319.2| - 0.16 11.9 0.6 2.7 7.9 0.0 2.4 1 1 1 2 2 2 0 Mut7-C RNAse domain DNA_ligase_ZBD PF03119.11 gi|118431685|ref|NP_148319.2| - 0.27 10.9 5.3 4.9 6.9 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.21 gi|118431685|ref|NP_148319.2| - 0.36 11.2 2.1 17 6.0 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-TFIIB PF13453.1 gi|118431685|ref|NP_148319.2| - 0.42 9.8 2.7 5.4 6.2 0.3 2.5 2 1 0 2 2 2 0 Transcription factor zinc-finger ADK_lid PF05191.9 gi|118431685|ref|NP_148319.2| - 0.44 10.2 3.9 23 4.7 0.1 3.1 3 0 0 3 3 3 0 Adenylate kinase, active site lid TFIIS_C PF01096.13 gi|118431685|ref|NP_148319.2| - 0.62 9.7 5.5 15 5.3 0.4 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.1 gi|118431685|ref|NP_148319.2| - 0.87 9.5 3.3 6.4 6.7 0.1 2.6 1 1 1 2 2 2 0 CpXC protein UPF0547 PF10571.4 gi|118431685|ref|NP_148319.2| - 0.96 9.2 4.6 6.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|118431685|ref|NP_148319.2| - 1.1 9.2 4.2 79 3.2 3.0 2.4 1 1 0 1 1 1 0 Rubredoxin DUF1610 PF07754.6 gi|118431685|ref|NP_148319.2| - 1.9 8.6 11.0 1.9 8.6 0.3 2.8 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) Trm56 PF01994.11 gi|118431686|ref|NP_148320.2| - 9e-47 157.7 0.0 1.1e-46 157.4 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 MMR_HSR1 PF01926.18 gi|14601780|ref|NP_148321.1| - 3.6e-15 55.9 0.0 6.6e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|14601780|ref|NP_148321.1| - 2.8e-08 33.1 0.0 6.2e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|14601780|ref|NP_148321.1| - 1e-07 31.5 0.0 3.1e-05 23.5 0.0 3.0 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|14601780|ref|NP_148321.1| - 1.2e-06 29.0 0.0 1.8e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|14601780|ref|NP_148321.1| - 0.00065 19.5 0.0 0.01 15.6 0.0 2.2 2 0 0 2 2 2 1 Dynamin family Arf PF00025.16 gi|14601780|ref|NP_148321.1| - 0.0015 17.7 0.0 0.035 13.3 0.0 2.3 2 1 0 2 2 2 1 ADP-ribosylation factor family SRPRB PF09439.5 gi|14601780|ref|NP_148321.1| - 0.0018 17.5 0.0 0.0075 15.5 0.0 1.9 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP-bdg_N PF13167.1 gi|14601780|ref|NP_148321.1| - 0.035 14.2 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal ABC_tran PF00005.22 gi|14601780|ref|NP_148321.1| - 0.077 13.2 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter HTH_3 PF01381.17 gi|118431687|ref|NP_148322.2| - 3.5e-12 45.9 1.0 5.3e-12 45.4 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|118431687|ref|NP_148322.2| - 5e-11 42.6 0.3 5e-11 42.6 0.2 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|118431687|ref|NP_148322.2| - 8.9e-11 41.6 0.1 1.6e-10 40.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|118431687|ref|NP_148322.2| - 8.3e-08 31.7 0.4 8.3e-08 31.7 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|118431687|ref|NP_148322.2| - 0.0029 17.3 0.1 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|118431687|ref|NP_148322.2| - 0.052 13.7 0.3 0.097 12.8 0.2 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain ZZ PF00569.12 gi|118431687|ref|NP_148322.2| - 0.08 12.4 0.1 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Zinc finger, ZZ type zf-FCS PF06467.9 gi|118431687|ref|NP_148322.2| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif AAA PF00004.24 gi|14601782|ref|NP_148323.1| - 8.5e-45 152.1 0.0 1.9e-44 151.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|14601782|ref|NP_148323.1| - 3.8e-07 30.1 0.0 2.2e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|14601782|ref|NP_148323.1| - 3.4e-06 27.1 0.6 2.5e-05 24.3 0.4 2.4 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|14601782|ref|NP_148323.1| - 6.2e-06 25.4 0.1 1.4e-05 24.2 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|14601782|ref|NP_148323.1| - 1.4e-05 25.2 1.0 0.002 18.2 0.3 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|14601782|ref|NP_148323.1| - 2.3e-05 24.1 0.6 0.00034 20.3 0.4 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|14601782|ref|NP_148323.1| - 0.00032 20.3 0.4 0.00098 18.8 0.3 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|14601782|ref|NP_148323.1| - 0.00067 20.4 0.0 0.0024 18.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|14601782|ref|NP_148323.1| - 0.0011 18.7 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|14601782|ref|NP_148323.1| - 0.0016 17.8 0.1 0.0049 16.2 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|14601782|ref|NP_148323.1| - 0.0018 17.0 0.0 0.0031 16.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|14601782|ref|NP_148323.1| - 0.0036 16.4 0.0 0.0069 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_3 PF07726.6 gi|14601782|ref|NP_148323.1| - 0.0051 16.4 0.0 0.033 13.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|14601782|ref|NP_148323.1| - 0.0055 16.6 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|14601782|ref|NP_148323.1| - 0.0065 15.4 0.0 0.012 14.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|14601782|ref|NP_148323.1| - 0.0076 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|14601782|ref|NP_148323.1| - 0.011 14.8 0.1 0.029 13.5 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI bZIP_1 PF00170.16 gi|14601782|ref|NP_148323.1| - 0.016 15.1 0.7 0.033 14.1 0.5 1.5 1 0 0 1 1 1 0 bZIP transcription factor AAA_18 PF13238.1 gi|14601782|ref|NP_148323.1| - 0.025 14.9 0.0 0.061 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|14601782|ref|NP_148323.1| - 0.036 13.7 0.8 0.43 10.2 0.1 2.2 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|14601782|ref|NP_148323.1| - 0.04 14.1 0.0 0.15 12.3 0.0 2.0 2 0 0 2 2 1 0 ABC transporter RNA_helicase PF00910.17 gi|14601782|ref|NP_148323.1| - 0.043 13.9 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_25 PF13481.1 gi|14601782|ref|NP_148323.1| - 0.05 12.9 1.2 0.41 10.0 0.2 2.4 1 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|14601782|ref|NP_148323.1| - 0.051 13.0 1.2 0.33 10.4 0.0 2.7 3 1 0 3 3 3 0 Sigma-54 interaction domain PhoH PF02562.11 gi|14601782|ref|NP_148323.1| - 0.059 12.5 0.1 0.13 11.4 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein Torsin PF06309.6 gi|14601782|ref|NP_148323.1| - 0.074 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_30 PF13604.1 gi|14601782|ref|NP_148323.1| - 0.091 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|14601782|ref|NP_148323.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|14601782|ref|NP_148323.1| - 0.15 10.8 0.3 0.32 9.8 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain TSC22 PF01166.13 gi|14601782|ref|NP_148323.1| - 0.27 11.2 2.5 0.55 10.2 0.6 2.1 2 0 0 2 2 2 0 TSC-22/dip/bun family TGT PF01702.13 gi|14601784|ref|NP_148325.1| - 2.3e-49 167.8 0.0 3.1e-49 167.4 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase BtpA PF03437.10 gi|14601784|ref|NP_148325.1| - 0.04 13.1 0.0 0.066 12.4 0.0 1.2 1 0 0 1 1 1 0 BtpA family APP_E2 PF12925.2 gi|14601784|ref|NP_148325.1| - 0.077 12.5 0.4 0.13 11.8 0.3 1.2 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein PAC2 PF09754.4 gi|118431689|ref|NP_148326.2| - 1.2e-32 113.5 0.0 1.5e-32 113.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.1 gi|14601786|ref|NP_148327.1| - 5.6e-11 42.1 0.0 8.6e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|14601786|ref|NP_148327.1| - 6e-06 25.9 0.3 1e-05 25.1 0.2 1.4 1 0 0 1 1 1 1 PUA domain FUR PF01475.14 gi|118431690|ref|NP_148328.2| - 1e-20 73.8 0.2 1.2e-20 73.5 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.6 gi|118431690|ref|NP_148328.2| - 1.5e-06 27.5 0.0 2.1e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.2 gi|118431690|ref|NP_148328.2| - 0.00014 21.5 0.0 0.00026 20.7 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|118431690|ref|NP_148328.2| - 0.00031 20.4 0.0 0.018 14.8 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|118431690|ref|NP_148328.2| - 0.00041 19.9 0.3 0.014 15.0 0.0 2.8 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|118431690|ref|NP_148328.2| - 0.0021 17.6 0.0 0.0068 16.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|118431690|ref|NP_148328.2| - 0.0036 16.6 0.1 0.014 14.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|118431690|ref|NP_148328.2| - 0.0055 16.8 0.0 0.0081 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|118431690|ref|NP_148328.2| - 0.014 15.0 0.0 0.11 12.1 0.0 2.4 2 1 1 3 3 3 0 Homeodomain-like domain DUF4423 PF14394.1 gi|118431690|ref|NP_148328.2| - 0.014 14.9 0.0 0.026 14.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_11 PF08279.7 gi|118431690|ref|NP_148328.2| - 0.015 14.8 0.1 0.21 11.2 0.0 2.4 3 0 0 3 3 3 0 HTH domain HTH_32 PF13565.1 gi|118431690|ref|NP_148328.2| - 0.024 15.4 0.1 0.043 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|118431690|ref|NP_148328.2| - 0.026 14.1 0.0 0.071 12.7 0.0 1.8 2 1 0 2 2 2 0 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|118431690|ref|NP_148328.2| - 0.042 13.4 0.0 0.11 12.0 0.0 1.8 1 1 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|118431690|ref|NP_148328.2| - 0.069 13.2 0.0 0.098 12.7 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF2513 PF10711.4 gi|118431690|ref|NP_148328.2| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PCNA_N PF00705.13 gi|118431691|ref|YP_874922.1| - 0.099 12.1 0.1 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 Proliferating cell nuclear antigen, N-terminal domain Mu-transpos_C PF09299.6 gi|14601788|ref|NP_148329.1| - 0.018 14.8 0.1 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 Mu transposase, C-terminal Aminotran_5 PF00266.14 gi|14601789|ref|NP_148330.1| - 1.3e-129 432.1 0.0 1.5e-129 432.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|14601789|ref|NP_148330.1| - 9.5e-07 28.1 0.3 1.8e-06 27.2 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|14601789|ref|NP_148330.1| - 5.2e-05 22.5 0.0 6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|14601789|ref|NP_148330.1| - 0.0013 17.1 0.0 0.0021 16.4 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|14601789|ref|NP_148330.1| - 0.0071 15.3 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II SelA PF03841.8 gi|14601789|ref|NP_148330.1| - 0.033 12.9 0.0 0.076 11.7 0.0 1.6 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase DBI_PRT PF02277.12 gi|118431693|ref|NP_148334.2| - 4.2e-24 85.2 0.6 6.6e-24 84.6 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase CbiZ PF01955.13 gi|118431694|ref|NP_148335.2| - 1e-36 126.5 0.0 1.5e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase PgpA PF04608.8 gi|118431694|ref|NP_148335.2| - 0.058 13.2 0.7 0.52 10.1 0.5 2.3 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A LRV PF01816.12 gi|118431694|ref|NP_148335.2| - 5.9 7.3 9.0 17 5.8 0.3 4.5 5 0 0 5 5 5 0 Leucine rich repeat variant NTP_transf_3 PF12804.2 gi|118431695|ref|NP_148336.2| - 8.9e-21 74.6 0.1 1e-20 74.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|118431695|ref|NP_148336.2| - 0.0024 17.4 0.0 0.0026 17.3 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Aminotran_1_2 PF00155.16 gi|118431696|ref|NP_148337.2| - 9.8e-36 123.4 0.0 1.2e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.10 gi|118431697|ref|NP_148338.2| - 1.6e-24 86.7 5.4 1.9e-24 86.5 3.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF2244 PF10003.4 gi|118431697|ref|NP_148338.2| - 0.44 9.9 4.8 1.3 8.4 3.3 1.8 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) CobD_Cbib PF03186.8 gi|118431698|ref|NP_148340.2| - 7.4e-66 222.2 5.3 9.1e-66 221.9 3.7 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Asn_synthase PF00733.16 gi|118431699|ref|NP_148341.2| - 2e-24 86.4 1.1 4.9e-23 81.9 0.8 2.1 1 1 0 1 1 1 1 Asparagine synthase DZR PF12773.2 gi|118431699|ref|NP_148341.2| - 0.0086 15.8 0.9 0.017 14.9 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon Rad50_zn_hook PF04423.9 gi|118431699|ref|NP_148341.2| - 0.023 14.1 0.4 0.043 13.2 0.3 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-ribbon_3 PF13248.1 gi|118431699|ref|NP_148341.2| - 0.17 11.1 1.6 0.47 9.7 1.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain ATP_bind_4 PF01902.12 gi|118431700|ref|NP_148342.2| - 2.8e-27 95.5 0.0 3.4e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|118431700|ref|NP_148342.2| - 0.0035 15.9 0.0 0.004 15.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase AIRS_C PF02769.17 gi|118431701|ref|NP_148343.2| - 2.9e-20 72.8 1.7 2.9e-20 72.8 1.2 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|118431701|ref|NP_148343.2| - 1.4e-09 38.1 0.3 3.2e-09 36.9 0.2 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Meth_synt_2 PF01717.13 gi|14601803|ref|NP_148344.1| - 4.9e-85 285.3 0.0 5.6e-85 285.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|14601803|ref|NP_148344.1| - 9.4e-25 87.5 0.0 7.6e-18 64.8 0.0 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain SHOCT PF09851.4 gi|14601803|ref|NP_148344.1| - 0.058 12.8 0.6 0.19 11.2 0.4 1.9 1 0 0 1 1 1 0 Short C-terminal domain Meth_synt_1 PF08267.7 gi|118431702|ref|NP_148345.2| - 1.6e-49 168.8 0.0 1.8e-39 135.8 0.0 2.9 2 1 1 3 3 3 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|118431702|ref|NP_148345.2| - 2.6e-24 85.8 0.0 3.6e-24 85.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain TGS PF02824.16 gi|118431703|ref|NP_148347.2| - 2.6e-23 81.6 0.2 4.4e-23 80.8 0.2 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|118431703|ref|NP_148347.2| - 2.6e-20 72.4 0.0 9.2e-20 70.7 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|118431703|ref|NP_148347.2| - 1.4e-08 34.2 0.0 3.7e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|118431703|ref|NP_148347.2| - 5.6e-05 23.6 0.0 0.00012 22.5 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|118431703|ref|NP_148347.2| - 0.0022 17.4 0.0 0.085 12.3 0.0 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|118431703|ref|NP_148347.2| - 0.015 14.7 0.0 0.049 13.0 0.0 1.8 2 1 0 2 2 2 0 Ras family AAA_29 PF13555.1 gi|118431703|ref|NP_148347.2| - 0.024 14.1 0.1 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|118431703|ref|NP_148347.2| - 0.061 13.1 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 Dynamin family AAA_21 PF13304.1 gi|118431703|ref|NP_148347.2| - 0.085 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain YchF-GTPase_C PF06071.8 gi|118431703|ref|NP_148347.2| - 0.087 12.6 0.1 3.2 7.6 0.1 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF933) AAA_22 PF13401.1 gi|118431703|ref|NP_148347.2| - 0.12 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|118431703|ref|NP_148347.2| - 0.12 13.1 0.5 0.95 10.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|118431703|ref|NP_148347.2| - 0.5 10.6 1.6 2.4 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain CN_hydrolase PF00795.17 gi|118431705|ref|NP_148349.2| - 1.3e-16 60.4 0.0 7e-15 54.8 0.0 2.3 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase NUDIX PF00293.23 gi|118431706|ref|NP_148350.2| - 2.5e-18 66.0 0.2 3e-18 65.7 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain MarR_2 PF12802.2 gi|118431707|ref|NP_148351.2| - 0.074 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Exo5 PF09810.4 gi|118431709|ref|NP_148352.2| - 0.093 11.9 0.1 0.38 9.9 0.2 1.7 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease ABC_tran PF00005.22 gi|118431710|ref|NP_148353.2| - 5e-34 117.5 0.0 7.3e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431710|ref|NP_148353.2| - 1.2e-12 48.4 0.2 7.1e-10 39.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|118431710|ref|NP_148353.2| - 0.00046 20.2 0.0 0.00096 19.2 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.1 gi|118431710|ref|NP_148353.2| - 0.00047 19.3 0.0 0.033 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|118431710|ref|NP_148353.2| - 0.00052 19.3 0.0 0.72 9.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|118431710|ref|NP_148353.2| - 0.0052 16.2 0.0 0.0098 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|118431710|ref|NP_148353.2| - 0.0072 16.0 0.0 0.022 14.5 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|118431710|ref|NP_148353.2| - 0.016 15.3 0.1 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|118431710|ref|NP_148353.2| - 0.018 15.3 0.1 0.048 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|118431710|ref|NP_148353.2| - 0.022 14.6 0.0 0.064 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|118431710|ref|NP_148353.2| - 0.028 13.8 0.0 0.24 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|118431710|ref|NP_148353.2| - 0.031 13.9 0.0 0.074 12.7 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|118431710|ref|NP_148353.2| - 0.034 14.1 0.0 0.085 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|118431710|ref|NP_148353.2| - 0.039 12.8 0.0 0.091 11.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|118431710|ref|NP_148353.2| - 0.063 13.4 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|118431710|ref|NP_148353.2| - 0.072 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|118431710|ref|NP_148353.2| - 0.086 13.6 0.5 0.17 12.6 0.3 1.8 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|118431710|ref|NP_148353.2| - 0.11 11.6 0.0 9.5 5.2 0.0 2.2 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|118431710|ref|NP_148353.2| - 0.14 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|118431710|ref|NP_148353.2| - 0.16 10.7 0.0 0.28 9.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|118431710|ref|NP_148353.2| - 0.18 11.2 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Ribonuc_red_lgC PF02867.10 gi|118431711|ref|NP_148354.2| - 1.6e-120 403.1 0.0 2.8e-87 293.5 0.0 2.3 2 1 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|118431711|ref|NP_148354.2| - 4.2e-14 52.1 0.4 1e-13 50.8 0.3 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Thy1 PF02511.10 gi|118431712|ref|NP_148355.2| - 5.1e-61 205.3 0.0 1.3e-60 204.0 0.0 1.6 1 1 0 1 1 1 1 Thymidylate synthase complementing protein Glycos_transf_1 PF00534.15 gi|118431714|ref|NP_148357.2| - 1.1e-43 148.5 0.0 3.8e-43 146.8 0.0 1.9 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|118431714|ref|NP_148357.2| - 2.8e-19 69.4 0.0 4.5e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|118431714|ref|NP_148357.2| - 2.2e-17 63.5 0.1 5.1e-17 62.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|118431714|ref|NP_148357.2| - 1e-15 58.2 0.3 2e-15 57.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|118431714|ref|NP_148357.2| - 6.7e-15 55.1 0.0 1.7e-14 53.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|118431714|ref|NP_148357.2| - 2.3e-06 27.4 0.0 1.3e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like Oxidored_nitro PF00148.14 gi|118431714|ref|NP_148357.2| - 0.0063 15.2 0.0 0.01 14.5 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Glyco_transf_5 PF08323.6 gi|118431714|ref|NP_148357.2| - 0.03 13.8 0.2 1.3 8.4 0.0 2.4 2 0 0 2 2 2 0 Starch synthase catalytic domain PIGA PF08288.7 gi|118431714|ref|NP_148357.2| - 0.032 14.5 0.0 0.066 13.5 0.0 1.5 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) ArgK PF03308.11 gi|118431714|ref|NP_148357.2| - 0.068 11.9 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein DUF3492 PF11997.3 gi|118431714|ref|NP_148357.2| - 0.11 11.9 0.1 14 5.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) GHMP_kinases_N PF00288.21 gi|118431715|ref|NP_148358.2| - 3.2e-13 49.5 4.3 4e-13 49.2 1.7 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|118431715|ref|NP_148358.2| - 1.1e-11 44.7 0.3 2.7e-11 43.4 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal Cys_Met_Meta_PP PF01053.15 gi|14601818|ref|NP_148359.1| - 3.2e-99 331.8 0.0 3.9e-99 331.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pribosyltran PF00156.22 gi|118431717|ref|NP_148362.2| - 1.6e-23 82.7 0.4 2e-23 82.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|118431717|ref|NP_148362.2| - 0.066 12.4 0.0 0.085 12.0 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Ribosomal_S17e PF00833.13 gi|14601822|ref|NP_148363.1| - 8.6e-24 83.6 0.8 9.7e-24 83.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 Sld5 PF05916.6 gi|14601822|ref|NP_148363.1| - 0.025 14.8 0.1 0.029 14.6 0.1 1.1 1 0 0 1 1 1 0 GINS complex protein Cpn60_TCP1 PF00118.19 gi|118431718|ref|NP_148364.2| - 3.9e-174 579.8 4.4 4.5e-174 579.6 3.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family tRNA-synt_1b PF00579.20 gi|118431719|ref|NP_148365.2| - 2.4e-46 158.1 0.0 1.8e-44 152.0 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) PAPS_reduct PF01507.14 gi|14601825|ref|NP_148366.1| - 5.1e-32 111.0 0.0 8.6e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|14601825|ref|NP_148366.1| - 0.00033 20.1 0.0 0.00059 19.2 0.0 1.4 1 0 0 1 1 1 1 ATP-binding region NAD_synthase PF02540.12 gi|14601825|ref|NP_148366.1| - 0.00034 19.6 0.0 0.00059 18.8 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|14601825|ref|NP_148366.1| - 0.034 13.4 0.0 0.051 12.8 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|14601825|ref|NP_148366.1| - 0.037 13.5 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Asn_synthase PF00733.16 gi|14601825|ref|NP_148366.1| - 0.08 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase UbiD PF01977.11 gi|14601828|ref|NP_148369.1| - 2.1e-97 326.2 0.2 2.6e-97 325.8 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NUDIX PF00293.23 gi|118431721|ref|NP_148370.2| - 3.8e-23 81.6 0.0 4.5e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Peptidase_M29 PF02073.10 gi|118431722|ref|NP_148371.2| - 1.7e-110 369.5 0.0 1.9e-110 369.4 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4388 PF14332.1 gi|118431722|ref|NP_148371.2| - 0.011 15.5 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4388) PhoU PF01895.14 gi|118431723|ref|NP_148372.2| - 5e-16 58.9 1.8 8.8e-13 48.5 0.2 2.5 2 1 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|118431723|ref|NP_148372.2| - 1.3e-10 40.7 0.0 3.3e-10 39.4 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-5a PF01287.15 gi|118431724|ref|NP_148373.2| - 1.9e-15 56.5 0.2 3.3e-15 55.7 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|118431724|ref|NP_148373.2| - 4.7e-06 26.3 0.0 1.4e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|118431724|ref|NP_148373.2| - 0.0017 17.9 0.6 0.0079 15.8 0.1 2.2 2 0 0 2 2 2 1 KOW motif EFP PF01132.15 gi|118431724|ref|NP_148373.2| - 0.036 13.7 0.1 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain ATP_bind_3 PF01171.15 gi|14601833|ref|NP_148374.1| - 2.6e-11 43.3 0.0 6.7e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 PP-loop family RecR PF02132.10 gi|14601833|ref|NP_148374.1| - 0.00011 21.4 5.4 0.00079 18.8 0.3 3.3 3 0 0 3 3 3 1 RecR protein tRNA_Me_trans PF03054.11 gi|14601833|ref|NP_148374.1| - 0.00018 20.1 0.0 0.00026 19.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|14601833|ref|NP_148374.1| - 0.0052 16.3 0.1 0.0082 15.6 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|14601833|ref|NP_148374.1| - 0.077 12.8 0.0 0.17 11.7 0.0 1.6 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|14601833|ref|NP_148374.1| - 0.31 10.2 2.8 0.32 10.2 0.0 2.3 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC OrfB_Zn_ribbon PF07282.6 gi|14601833|ref|NP_148374.1| - 0.56 9.8 4.5 19 5.0 0.0 3.5 3 1 0 3 3 3 0 Putative transposase DNA-binding domain ThiS PF02597.15 gi|118431725|ref|YP_874925.1| - 0.01 16.2 0.3 0.013 15.9 0.2 1.1 1 0 0 1 1 1 0 ThiS family DUF521 PF04412.8 gi|118431726|ref|NP_148375.2| - 7.7e-128 426.4 0.0 8.7e-128 426.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|14601835|ref|NP_148376.1| - 7.8e-26 89.5 0.1 1.1e-25 89.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 Thymidylate_kin PF02223.12 gi|14601836|ref|NP_148377.1| - 2.4e-34 118.3 0.0 2.9e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.14 gi|14601836|ref|NP_148377.1| - 2e-05 24.5 0.0 2.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.1 gi|14601836|ref|NP_148377.1| - 9.4e-05 22.7 0.0 0.00019 21.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|14601836|ref|NP_148377.1| - 0.0058 16.5 1.2 0.046 13.5 0.8 2.1 1 1 0 1 1 1 1 AAA domain ApbA_C PF08546.6 gi|14601836|ref|NP_148377.1| - 0.041 13.8 0.1 0.062 13.2 0.1 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal SKI PF01202.17 gi|14601836|ref|NP_148377.1| - 0.089 12.6 0.1 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase ROK PF00480.15 gi|118431727|ref|NP_148378.2| - 5.9e-25 88.1 0.1 8e-25 87.6 0.1 1.2 1 0 0 1 1 1 1 ROK family AAA_10 PF12846.2 gi|14601838|ref|NP_148379.1| - 1.2e-20 74.1 0.0 4.4e-20 72.3 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|14601838|ref|NP_148379.1| - 1.3e-14 54.6 0.0 2.1e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|14601838|ref|NP_148379.1| - 5.3e-08 31.6 0.0 1.5e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|14601838|ref|NP_148379.1| - 1.2e-05 24.8 0.0 3.8e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|14601838|ref|NP_148379.1| - 1.5e-05 23.7 0.0 0.00019 20.2 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.1 gi|14601838|ref|NP_148379.1| - 0.0016 17.9 0.0 0.014 14.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|14601838|ref|NP_148379.1| - 0.0019 18.3 0.2 2.2 8.4 0.3 2.3 2 0 0 2 2 2 2 AAA domain Zot PF05707.7 gi|14601838|ref|NP_148379.1| - 0.0041 16.6 0.0 0.012 15.1 0.0 1.6 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) CbiA PF01656.18 gi|14601838|ref|NP_148379.1| - 0.011 15.1 0.2 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|14601838|ref|NP_148379.1| - 0.032 13.9 0.1 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IPT PF01745.11 gi|14601838|ref|NP_148379.1| - 0.059 12.5 0.4 0.13 11.4 0.3 1.5 1 0 0 1 1 1 0 Isopentenyl transferase T2SE PF00437.15 gi|14601838|ref|NP_148379.1| - 0.062 12.1 0.0 0.098 11.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.17 gi|14601838|ref|NP_148379.1| - 0.084 12.3 0.2 0.14 11.5 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|14601838|ref|NP_148379.1| - 0.084 12.4 0.3 0.26 10.8 0.2 1.7 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|14601838|ref|NP_148379.1| - 0.089 13.2 0.0 0.37 11.2 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein DEAD PF00270.24 gi|14601838|ref|NP_148379.1| - 0.14 11.6 0.0 12 5.3 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|14601838|ref|NP_148379.1| - 0.21 11.8 0.3 0.62 10.3 0.3 1.7 2 0 0 2 2 1 0 ABC transporter ResIII PF04851.10 gi|14601838|ref|NP_148379.1| - 0.24 11.2 0.0 14 5.4 0.1 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_18 PF13238.1 gi|118431728|ref|NP_148380.2| - 1.5e-10 41.4 0.1 1.6e-08 34.9 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|118431728|ref|NP_148380.2| - 7.5e-08 33.2 0.1 1.9e-07 31.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|118431728|ref|NP_148380.2| - 5.7e-07 29.5 0.0 2.9e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|118431728|ref|NP_148380.2| - 1.2e-05 25.5 0.1 2.1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|118431728|ref|NP_148380.2| - 0.00023 21.0 0.0 0.0016 18.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|118431728|ref|NP_148380.2| - 0.0015 18.2 1.0 0.0045 16.7 0.7 1.9 1 1 0 1 1 1 1 Part of AAA domain Cytidylate_kin2 PF13189.1 gi|118431728|ref|NP_148380.2| - 0.0066 16.3 0.0 0.024 14.5 0.0 1.8 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_28 PF13521.1 gi|118431728|ref|NP_148380.2| - 0.01 15.8 0.2 0.021 14.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|118431728|ref|NP_148380.2| - 0.017 15.1 0.2 0.1 12.6 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|118431728|ref|NP_148380.2| - 0.025 14.7 0.2 0.091 12.8 0.1 1.9 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|118431728|ref|NP_148380.2| - 0.028 13.4 0.1 0.054 12.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF2075 PF09848.4 gi|118431728|ref|NP_148380.2| - 0.045 12.7 0.1 0.057 12.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.9 gi|118431728|ref|NP_148380.2| - 0.059 13.0 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Toprim_4 PF13662.1 gi|118431729|ref|NP_148382.2| - 1.1e-08 34.9 0.1 3.8e-08 33.2 0.0 2.0 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|118431729|ref|NP_148382.2| - 1.4e-06 28.1 0.1 5.1e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Toprim domain CARD PF00619.16 gi|118431729|ref|NP_148382.2| - 0.0057 16.4 0.9 0.016 15.0 0.6 1.7 1 0 0 1 1 1 1 Caspase recruitment domain Toprim_2 PF13155.1 gi|118431729|ref|NP_148382.2| - 0.022 15.0 0.0 0.061 13.6 0.0 1.8 1 0 0 1 1 1 0 Toprim-like CCDC14 PF15254.1 gi|118431729|ref|NP_148382.2| - 0.14 10.5 0.2 0.22 9.8 0.2 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 14 Skp1 PF01466.14 gi|118431729|ref|NP_148382.2| - 7.2 6.7 6.3 1.1 9.3 0.7 2.4 2 0 0 2 2 2 0 Skp1 family, dimerisation domain DNA_pol_B PF00136.16 gi|118431730|ref|NP_148383.2| - 2e-97 326.9 0.0 2.7e-97 326.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|118431730|ref|NP_148383.2| - 4e-34 117.9 0.0 1.5e-32 112.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|118431730|ref|NP_148383.2| - 1e-08 35.1 0.0 2.1e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|118431730|ref|NP_148383.2| - 6e-06 25.9 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.8 gi|118431730|ref|NP_148383.2| - 0.016 13.8 0.1 0.12 11.0 0.0 2.2 3 0 0 3 3 3 0 DNA polymerase type B, organellar and viral AP_endonuc_2 PF01261.19 gi|118431731|ref|NP_148385.2| - 1.2e-21 76.9 0.0 1.5e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|118431731|ref|NP_148385.2| - 5.3e-05 22.3 0.0 7e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE PNP_UDP_1 PF01048.15 gi|118431732|ref|NP_148386.2| - 6.6e-45 152.9 3.0 7.8e-45 152.6 2.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PfkB PF00294.19 gi|118431733|ref|NP_148387.2| - 1e-34 120.0 0.0 2.1e-34 119.0 0.0 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Thiolase_N PF00108.18 gi|14601847|ref|NP_148388.1| - 4.4e-66 222.5 0.0 5.5e-66 222.2 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|14601847|ref|NP_148388.1| - 9.5e-42 141.3 0.0 3.2e-41 139.6 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|14601847|ref|NP_148388.1| - 0.0068 15.9 2.6 0.4 10.1 2.0 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Radical_SAM PF04055.16 gi|14601848|ref|NP_148389.1| - 1.1e-24 87.5 0.0 7.2e-24 84.8 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|14601848|ref|NP_148389.1| - 2e-12 47.0 2.0 5.6e-12 45.5 1.1 2.0 1 1 0 1 1 1 1 B12 binding domain DUF165 PF02592.10 gi|14601849|ref|NP_148390.1| - 3.8e-49 166.5 10.2 3.8e-49 166.5 7.1 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 ParBc_2 PF08857.6 gi|14601849|ref|NP_148390.1| - 0.028 14.2 0.2 0.041 13.7 0.1 1.2 1 0 0 1 1 1 0 Putative ParB-like nuclease CTP-dep_RFKase PF01982.11 gi|118431734|ref|NP_148391.2| - 4.8e-34 116.5 0.0 5.4e-34 116.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Amidohydro_1 PF01979.15 gi|118431735|ref|NP_148394.2| - 0.0017 18.0 0.0 0.0032 17.1 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|118431735|ref|NP_148394.2| - 0.027 14.2 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 Amidohydrolase GDC-P PF02347.11 gi|118431738|ref|NP_148400.2| - 3.1e-06 26.1 0.0 2e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|118431738|ref|NP_148400.2| - 6.4e-05 21.8 0.0 0.00012 20.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|118431738|ref|NP_148400.2| - 0.0054 15.7 0.0 0.0092 14.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|118431738|ref|NP_148400.2| - 0.027 13.6 0.0 0.06 12.4 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase GDC-P PF02347.11 gi|118431739|ref|NP_148401.2| - 3e-116 388.6 0.0 3.5e-116 388.4 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein AhpC-TSA PF00578.16 gi|118431740|ref|NP_148402.2| - 5.9e-39 132.5 0.0 7e-39 132.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|118431740|ref|NP_148402.2| - 4.1e-23 81.5 0.0 4.7e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|118431740|ref|NP_148402.2| - 0.00034 20.5 0.0 0.0077 16.1 0.0 2.1 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|118431740|ref|NP_148402.2| - 0.0076 15.8 0.0 0.0096 15.5 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.1 gi|118431740|ref|NP_148402.2| - 0.073 13.2 0.2 0.14 12.2 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin-like DUF899 PF05988.7 gi|118431740|ref|NP_148402.2| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) POR_N PF01855.14 gi|118431741|ref|NP_148403.2| - 2e-60 204.2 0.0 3e-60 203.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|118431741|ref|NP_148403.2| - 8.4e-34 116.9 0.0 1.5e-33 116.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|118431741|ref|NP_148403.2| - 3.8e-08 33.3 0.0 4.5e-07 29.8 0.0 2.4 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|118431741|ref|NP_148403.2| - 0.0024 17.3 0.0 0.0053 16.2 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|14601863|ref|NP_148404.1| - 1.3e-31 109.2 0.1 2.3e-31 108.4 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|14601863|ref|NP_148404.1| - 2.3e-13 49.8 0.4 1.8e-12 46.9 0.3 2.2 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal CGGC PF08821.6 gi|14601863|ref|NP_148404.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 CGGC domain DUF1850 PF08905.6 gi|118431742|ref|NP_148405.2| - 4.9e-06 26.2 0.0 6.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) Aminotran_3 PF00202.16 gi|118431743|ref|NP_148406.2| - 4.2e-60 203.3 0.0 6.2e-60 202.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III HD_4 PF13328.1 gi|118431743|ref|NP_148406.2| - 0.043 13.5 0.0 3.8 7.1 0.0 2.4 2 0 0 2 2 2 0 HD domain CRISPR_Cse1 PF09481.5 gi|118431743|ref|NP_148406.2| - 0.16 10.6 0.0 0.27 9.9 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) DctM PF06808.7 gi|14601866|ref|NP_148407.1| - 1.4e-75 254.4 58.4 6.6e-52 176.4 15.4 3.6 2 1 1 3 3 3 2 DctM-like transporters Peptidase_M50 PF02163.17 gi|14601866|ref|NP_148407.1| - 0.0012 17.7 0.0 0.91 8.4 0.0 3.8 2 2 0 2 2 2 2 Peptidase family M50 NMT1 PF09084.6 gi|118431744|ref|NP_148408.2| - 1e-08 35.0 0.1 1.6e-08 34.3 0.1 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|118431744|ref|NP_148408.2| - 2.5e-05 23.7 0.8 7.2e-05 22.2 0.6 1.9 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OsmC PF02566.14 gi|14601868|ref|NP_148409.1| - 0.0013 18.9 0.1 0.0021 18.2 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein AIM24 PF01987.12 gi|118431745|ref|NP_148410.2| - 1.6e-51 174.8 0.8 1.8e-51 174.6 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MttA_Hcf106 PF02416.11 gi|118431746|ref|YP_874926.1| - 1.8e-15 55.7 0.3 2.1e-15 55.5 0.2 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family Sperm_Ag_HE2 PF05324.8 gi|118431746|ref|YP_874926.1| - 0.0041 16.9 0.0 0.005 16.7 0.0 1.1 1 0 0 1 1 1 1 Sperm antigen HE2 OppC_N PF12911.2 gi|118431746|ref|YP_874926.1| - 0.26 10.6 1.2 0.34 10.3 0.8 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Gln-synt_C PF00120.19 gi|118431747|ref|NP_148412.2| - 5.1e-87 291.2 0.0 6.5e-87 290.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|118431747|ref|NP_148412.2| - 1e-13 50.6 0.0 2.2e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DEAD_assoc PF08494.6 gi|118431748|ref|NP_148413.2| - 3.6e-62 209.4 0.0 9.4e-62 208.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|118431748|ref|NP_148413.2| - 1.8e-29 102.3 0.0 2.6e-28 98.6 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|118431748|ref|NP_148413.2| - 1.6e-14 53.5 0.0 4.6e-14 52.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|118431748|ref|NP_148413.2| - 5e-06 26.4 0.0 1.4e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Ubiq_cyt_C_chap PF03981.7 gi|118431748|ref|NP_148413.2| - 0.0014 18.4 0.2 0.011 15.5 0.0 2.5 2 0 0 2 2 2 1 Ubiquinol-cytochrome C chaperone SNF2_N PF00176.18 gi|118431748|ref|NP_148413.2| - 0.0019 17.0 0.0 0.0052 15.6 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|118431748|ref|NP_148413.2| - 0.0047 16.6 0.0 0.4 10.4 0.0 2.8 2 0 0 2 2 2 1 Part of AAA domain DUF1269 PF06897.7 gi|118431748|ref|NP_148413.2| - 0.025 14.6 0.1 6 6.9 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) PhoH PF02562.11 gi|118431748|ref|NP_148413.2| - 0.036 13.3 0.0 0.077 12.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF4130 PF13566.1 gi|118431748|ref|NP_148413.2| - 0.04 13.4 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4130 UvrD-helicase PF00580.16 gi|118431748|ref|NP_148413.2| - 0.2 10.8 1.7 10 5.2 0.7 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|118431748|ref|NP_148413.2| - 0.28 11.3 3.2 7.2 6.7 0.3 3.7 2 2 0 2 2 2 0 AAA domain WEMBL PF05701.6 gi|118431749|ref|NP_148414.2| - 0.0002 19.9 0.7 0.00028 19.5 0.5 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light YidC_periplas PF14849.1 gi|118431749|ref|NP_148414.2| - 0.0014 18.6 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 YidC periplasmic domain DivIC PF04977.10 gi|118431749|ref|NP_148414.2| - 0.0016 17.8 0.3 0.0036 16.7 0.2 1.6 1 0 0 1 1 1 1 Septum formation initiator Filament PF00038.16 gi|118431749|ref|NP_148414.2| - 0.0055 16.2 0.6 0.0083 15.6 0.4 1.2 1 0 0 1 1 1 1 Intermediate filament protein BicD PF09730.4 gi|118431749|ref|NP_148414.2| - 0.0064 14.9 0.4 0.0089 14.4 0.2 1.1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D ADIP PF11559.3 gi|118431749|ref|NP_148414.2| - 0.0089 15.9 1.0 0.013 15.4 0.7 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.3 gi|118431749|ref|NP_148414.2| - 0.0095 15.7 3.1 0.018 14.8 2.1 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding MAD PF05557.8 gi|118431749|ref|NP_148414.2| - 0.015 13.4 0.4 0.02 12.9 0.3 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein HCMV_UL139 PF12507.3 gi|118431749|ref|NP_148414.2| - 0.015 15.4 0.1 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein TBPIP PF07106.8 gi|118431749|ref|NP_148414.2| - 0.018 14.6 0.2 0.027 14.0 0.2 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) bZIP_1 PF00170.16 gi|118431749|ref|NP_148414.2| - 0.02 14.8 0.9 0.041 13.8 0.6 1.5 1 0 0 1 1 1 0 bZIP transcription factor DUF904 PF06005.7 gi|118431749|ref|NP_148414.2| - 0.021 15.0 2.5 0.038 14.2 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) PspA_IM30 PF04012.7 gi|118431749|ref|NP_148414.2| - 0.023 14.0 0.2 0.034 13.4 0.1 1.2 1 0 0 1 1 1 0 PspA/IM30 family CENP-F_leu_zip PF10473.4 gi|118431749|ref|NP_148414.2| - 0.025 14.4 2.4 0.064 13.1 1.7 1.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin_1 PF12718.2 gi|118431749|ref|NP_148414.2| - 0.029 14.2 0.9 0.045 13.5 0.6 1.2 1 0 0 1 1 1 0 Tropomyosin like Herpes_BLRF2 PF05812.7 gi|118431749|ref|NP_148414.2| - 0.034 13.9 0.5 0.054 13.2 0.4 1.3 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein Prefoldin_2 PF01920.15 gi|118431749|ref|NP_148414.2| - 0.037 13.8 2.4 0.043 13.5 0.4 1.8 1 1 1 2 2 2 0 Prefoldin subunit HALZ PF02183.13 gi|118431749|ref|NP_148414.2| - 0.057 13.1 2.3 0.12 12.0 1.6 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper CALCOCO1 PF07888.6 gi|118431749|ref|NP_148414.2| - 0.06 11.6 0.1 0.085 11.1 0.0 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Prefoldin PF02996.12 gi|118431749|ref|NP_148414.2| - 0.066 12.8 0.2 0.22 11.1 0.1 1.9 1 1 0 1 1 1 0 Prefoldin subunit FlaC_arch PF05377.6 gi|118431749|ref|NP_148414.2| - 0.066 13.1 0.6 0.066 13.1 0.4 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) APG6 PF04111.7 gi|118431749|ref|NP_148414.2| - 0.069 12.1 0.1 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Taxilin PF09728.4 gi|118431749|ref|NP_148414.2| - 0.074 12.1 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Spc24 PF08286.6 gi|118431749|ref|NP_148414.2| - 0.075 12.7 0.2 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Cortex-I_coil PF09304.5 gi|118431749|ref|NP_148414.2| - 0.093 12.7 1.1 0.17 11.9 0.8 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil DUF972 PF06156.8 gi|118431749|ref|NP_148414.2| - 0.12 12.7 0.1 0.2 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Nup54 PF13874.1 gi|118431749|ref|NP_148414.2| - 0.13 11.9 0.2 0.21 11.2 0.1 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 HR1 PF02185.11 gi|118431749|ref|NP_148414.2| - 0.13 11.9 3.5 1.9 8.3 0.7 2.3 1 1 1 2 2 2 0 Hr1 repeat Fmp27_WPPW PF10359.4 gi|118431749|ref|NP_148414.2| - 0.18 10.1 0.5 0.26 9.6 0.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Atg14 PF10186.4 gi|118431749|ref|NP_148414.2| - 0.35 9.7 0.9 0.49 9.2 0.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 MmgE_PrpD PF03972.9 gi|118431750|ref|NP_148415.2| - 1.6e-161 537.4 0.0 1.8e-161 537.2 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family SDH_alpha PF03313.10 gi|118431750|ref|NP_148415.2| - 0.00016 20.8 3.6 0.0026 16.8 3.1 2.4 2 1 0 2 2 2 1 Serine dehydratase alpha chain Thi4 PF01946.12 gi|118431751|ref|NP_148416.2| - 6.8e-64 215.1 0.0 9e-64 214.7 0.0 1.2 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|118431751|ref|NP_148416.2| - 3.7e-14 52.6 0.3 5.3e-14 52.1 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|118431751|ref|NP_148416.2| - 4.9e-14 52.0 3.8 1.5e-09 37.2 0.9 2.1 1 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|118431751|ref|NP_148416.2| - 5.4e-11 42.0 6.3 1.1e-07 31.1 0.8 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|118431751|ref|NP_148416.2| - 1.9e-10 40.6 0.2 4.8e-10 39.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|118431751|ref|NP_148416.2| - 2.5e-08 32.7 0.0 3.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|118431751|ref|NP_148416.2| - 1.2e-07 31.1 0.2 3.7e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|118431751|ref|NP_148416.2| - 2.3e-07 31.0 0.6 6.5e-07 29.6 0.4 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|118431751|ref|NP_148416.2| - 3.1e-07 30.4 0.1 4.9e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|118431751|ref|NP_148416.2| - 1.2e-06 27.6 1.2 2.3e-06 26.7 0.8 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|118431751|ref|NP_148416.2| - 2.7e-06 26.5 1.6 1.7e-05 23.9 1.1 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|118431751|ref|NP_148416.2| - 0.00029 20.0 0.1 0.00047 19.3 0.1 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|118431751|ref|NP_148416.2| - 0.00049 19.8 1.3 0.0018 18.0 0.2 2.1 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|118431751|ref|NP_148416.2| - 0.0054 17.1 0.3 0.0054 17.1 0.2 2.1 3 0 0 3 3 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|118431751|ref|NP_148416.2| - 0.014 14.0 0.5 0.069 11.7 0.3 1.9 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|118431751|ref|NP_148416.2| - 0.023 14.9 0.0 0.058 13.6 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.16 gi|118431751|ref|NP_148416.2| - 0.042 13.6 0.1 0.094 12.5 0.0 1.6 1 0 0 1 1 1 0 ThiF family ApbA PF02558.11 gi|118431751|ref|NP_148416.2| - 0.081 12.3 0.4 0.19 11.1 0.3 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA OKR_DC_1_N PF03709.10 gi|118431751|ref|NP_148416.2| - 0.082 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain AlaDh_PNT_C PF01262.16 gi|118431751|ref|NP_148416.2| - 0.085 12.4 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NfeD PF01957.13 gi|118431752|ref|NP_148417.2| - 4.8e-32 111.0 6.2 4.8e-32 111.0 4.3 2.3 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|118431752|ref|NP_148417.2| - 3.5e-05 23.5 0.1 5.5e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|118431752|ref|NP_148417.2| - 0.0012 17.7 0.2 0.0019 17.0 0.2 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase STAS PF01740.16 gi|118431752|ref|NP_148417.2| - 0.037 13.4 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 STAS domain Band_7 PF01145.20 gi|118431753|ref|NP_148418.2| - 3.1e-38 131.4 3.1 4.1e-38 131.0 2.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|118431753|ref|NP_148418.2| - 1.8e-05 24.3 0.2 0.00024 20.6 0.1 2.1 2 0 0 2 2 2 1 SPFH domain-Band 7 family Sec23_trunk PF04811.10 gi|118431753|ref|NP_148418.2| - 0.085 12.2 0.0 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 Sec23/Sec24 trunk domain TatC PF00902.13 gi|118431754|ref|NP_148419.2| - 6.9e-34 117.1 14.0 9.1e-34 116.7 9.7 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.11 gi|118431755|ref|YP_874927.1| - 2e-18 65.1 0.4 2.4e-18 64.9 0.2 1.0 1 0 0 1 1 1 1 mttA/Hcf106 family AAA_21 PF13304.1 gi|118431756|ref|YP_874928.1| - 0.033 14.1 0.0 0.04 13.8 0.0 1.0 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.11 gi|118431757|ref|NP_148422.2| - 1e-06 28.4 10.9 1.6e-06 27.9 7.5 1.3 1 0 0 1 1 1 1 Cobalt transport protein BC10 PF06726.7 gi|118431757|ref|NP_148422.2| - 0.06 13.3 0.1 2.7 8.0 0.0 2.7 2 0 0 2 2 2 0 Bladder cancer-related protein BC10 Lactamase_B PF00753.22 gi|118431758|ref|NP_148423.2| - 3.5e-24 85.5 1.0 4.8e-24 85.0 0.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|118431758|ref|NP_148423.2| - 4.4e-05 23.1 0.1 7.5e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Acyl-CoA_dh_1 PF00441.19 gi|118431760|ref|NP_148425.2| - 2.6e-48 163.9 2.8 3.7e-48 163.4 1.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|118431760|ref|NP_148425.2| - 1.6e-32 112.4 0.9 2.4e-32 111.8 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|118431760|ref|NP_148425.2| - 3.5e-19 68.0 0.2 6.8e-19 67.1 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|118431760|ref|NP_148425.2| - 4.3e-18 65.8 1.3 6.7e-18 65.2 0.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|118431760|ref|NP_148425.2| - 0.078 12.3 0.0 0.24 10.7 0.0 1.9 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal DHHA1 PF02272.14 gi|118431760|ref|NP_148425.2| - 0.23 11.1 2.5 22 4.8 0.0 3.4 3 0 0 3 3 3 0 DHHA1 domain Amidohydro_3 PF07969.6 gi|14601882|ref|NP_148426.1| - 1.3e-55 189.3 0.0 1.5e-55 189.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|14601882|ref|NP_148426.1| - 0.003 17.3 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|14601882|ref|NP_148426.1| - 0.13 12.3 3.1 12 5.7 0.7 2.7 1 1 0 2 2 2 0 Amidohydrolase PRP4 PF08799.6 gi|118431761|ref|YP_874929.1| - 0.031 13.5 0.0 0.04 13.1 0.0 1.2 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like Bac_rhodopsin PF01036.13 gi|118431761|ref|YP_874929.1| - 0.046 13.0 1.5 0.061 12.6 1.1 1.3 1 1 0 1 1 1 0 Bacteriorhodopsin-like protein SdpI PF13630.1 gi|118431761|ref|YP_874929.1| - 0.052 13.2 0.7 0.071 12.8 0.5 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family PGPGW PF09656.5 gi|118431761|ref|YP_874929.1| - 0.11 11.7 6.1 1.7 8.0 0.4 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF962 PF06127.6 gi|118431761|ref|YP_874929.1| - 0.15 11.9 0.2 0.19 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF962) DUF1469 PF07332.6 gi|118431761|ref|YP_874929.1| - 0.31 10.7 5.4 0.36 10.5 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1206 PF06724.6 gi|118431761|ref|YP_874929.1| - 1.1 9.0 5.4 0.56 9.9 1.1 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) CstA PF02554.9 gi|118431762|ref|NP_148427.2| - 4.4e-123 410.6 25.3 4.4e-123 410.6 17.6 1.7 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|118431762|ref|NP_148427.2| - 4.8e-25 88.3 7.9 4.8e-25 88.3 5.5 3.3 3 0 0 3 3 3 1 C-terminal domain on CstA (DUF4161) Lig_chan PF00060.21 gi|118431762|ref|NP_148427.2| - 1 9.0 4.6 1 9.0 1.2 2.6 2 0 0 2 2 2 0 Ligand-gated ion channel DUF2973 PF11189.3 gi|118431762|ref|NP_148427.2| - 4.3 7.1 9.7 2.9 7.7 1.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2973) RuvB_N PF05496.7 gi|14601884|ref|NP_148428.1| - 0.1 11.6 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus ArsA_ATPase PF02374.10 gi|118431763|ref|NP_148429.2| - 2.3e-14 53.1 0.0 2.6e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|118431763|ref|NP_148429.2| - 4.4e-07 29.5 0.1 4.5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|118431763|ref|NP_148429.2| - 0.00011 22.2 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118431763|ref|NP_148429.2| - 0.00093 20.0 1.1 0.0019 19.0 0.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118431763|ref|NP_148429.2| - 0.00097 19.4 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|118431763|ref|NP_148429.2| - 0.0046 16.6 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|118431763|ref|NP_148429.2| - 0.014 14.5 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|118431763|ref|NP_148429.2| - 0.02 14.4 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|118431763|ref|NP_148429.2| - 0.026 13.5 0.1 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ Mg_chelatase PF01078.16 gi|118431763|ref|NP_148429.2| - 0.028 13.5 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|118431763|ref|NP_148429.2| - 0.042 13.8 0.1 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|118431763|ref|NP_148429.2| - 0.058 12.2 1.3 0.097 11.5 0.9 1.3 1 0 0 1 1 1 0 NB-ARC domain Seadorna_VP7 PF07387.6 gi|118431763|ref|NP_148429.2| - 0.1 11.4 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 Seadornavirus VP7 ArgK PF03308.11 gi|118431763|ref|NP_148429.2| - 0.14 10.8 0.5 0.18 10.5 0.4 1.2 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|118431763|ref|NP_148429.2| - 0.38 10.4 2.3 0.6 9.7 1.6 1.4 1 1 0 1 1 1 0 NTPase AAA_19 PF13245.1 gi|118431763|ref|NP_148429.2| - 1.9 8.2 4.0 1.1 9.0 1.3 2.0 2 1 0 2 2 2 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|14601886|ref|NP_148430.1| - 1.3e-27 96.6 0.0 1.5e-27 96.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|14601886|ref|NP_148430.1| - 0.0072 16.1 0.1 0.22 11.4 0.0 2.3 2 0 0 2 2 2 1 ParA/MinD ATPase like tRNA-synt_2c PF01411.14 gi|14601887|ref|NP_148431.1| - 2.7e-112 375.8 0.0 3.5e-112 375.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|14601887|ref|NP_148431.1| - 1.5e-15 56.7 0.1 3e-15 55.7 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|14601887|ref|NP_148431.1| - 9.3e-06 25.2 1.9 2.2e-05 24.0 1.3 1.6 1 0 0 1 1 1 1 DHHA1 domain Ribosomal_60s PF00428.14 gi|14601888|ref|NP_148432.1| - 2.2e-15 56.8 23.0 2.6e-15 56.5 15.9 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein IFT43 PF15305.1 gi|14601888|ref|NP_148432.1| - 0.0097 15.9 1.3 0.012 15.5 0.9 1.1 1 0 0 1 1 1 1 Intraflagellar transport protein 43 PepSY_2 PF13670.1 gi|14601888|ref|NP_148432.1| - 0.015 15.1 7.7 0.98 9.3 0.1 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF177 PF02620.12 gi|14601888|ref|NP_148432.1| - 0.056 13.4 1.5 0.062 13.3 1.0 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 EF-hand_8 PF13833.1 gi|14601888|ref|NP_148432.1| - 0.093 12.3 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 EF-hand domain pair Myc_N PF01056.13 gi|14601888|ref|NP_148432.1| - 0.1 11.7 3.5 0.12 11.4 2.4 1.1 1 0 0 1 1 1 0 Myc amino-terminal region HEPPP_synt_1 PF07307.6 gi|14601888|ref|NP_148432.1| - 0.11 11.9 0.9 0.14 11.5 0.5 1.3 1 1 0 1 1 1 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 UBN_AB PF14075.1 gi|14601888|ref|NP_148432.1| - 0.12 11.9 2.7 0.14 11.7 1.9 1.0 1 0 0 1 1 1 0 Ubinuclein conserved middle domain DUF3588 PF12140.3 gi|14601888|ref|NP_148432.1| - 0.14 12.2 0.1 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3588) Flavodoxin_1 PF00258.20 gi|14601888|ref|NP_148432.1| - 0.31 11.0 3.8 0.4 10.6 2.6 1.2 1 0 0 1 1 1 0 Flavodoxin RNase_H2-Ydr279 PF09468.5 gi|14601888|ref|NP_148432.1| - 0.39 9.8 2.2 0.48 9.5 1.6 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) Band_7 PF01145.20 gi|14601888|ref|NP_148432.1| - 0.65 9.8 6.7 0.86 9.4 4.6 1.3 1 0 0 1 1 1 0 SPFH domain / Band 7 family Sigma70_ner PF04546.8 gi|14601888|ref|NP_148432.1| - 1.4 8.4 8.3 1.6 8.3 5.4 1.3 1 1 0 1 1 1 0 Sigma-70, non-essential region BSP_II PF05432.6 gi|14601888|ref|NP_148432.1| - 1.5 8.0 7.0 1.5 8.0 4.8 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) VirionAssem_T7 PF11653.3 gi|14601888|ref|NP_148432.1| - 3.7 8.3 7.1 4.9 7.9 4.9 1.2 1 0 0 1 1 1 0 Bacteriophage T7 virion assembly protein Ribosomal_L10 PF00466.15 gi|118431764|ref|NP_148433.2| - 8.2e-19 67.3 0.2 3.3e-18 65.4 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_L1 PF00687.16 gi|118431765|ref|NP_148435.2| - 8.7e-40 136.4 0.0 1e-39 136.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|14601892|ref|NP_148436.1| - 4.9e-21 74.6 0.9 6.2e-21 74.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain FliH PF02108.11 gi|14601892|ref|NP_148436.1| - 0.018 14.8 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Flagellar assembly protein FliH Spt5-NGN PF03439.8 gi|118431766|ref|NP_148437.2| - 3.2e-20 71.6 0.0 5.5e-20 70.8 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|118431766|ref|NP_148437.2| - 7.2e-08 31.8 0.4 1.8e-07 30.6 0.3 1.7 1 0 0 1 1 1 1 KOW motif Lipid_DES PF08557.5 gi|118431766|ref|NP_148437.2| - 0.034 13.3 0.6 0.069 12.4 0.4 1.5 1 0 0 1 1 1 0 Sphingolipid Delta4-desaturase (DES) Mut7-C PF01927.11 gi|118431768|ref|NP_148439.2| - 4.4e-52 175.9 0.1 5e-52 175.7 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Rubredoxin PF00301.15 gi|118431768|ref|NP_148439.2| - 0.012 15.4 1.1 0.021 14.7 0.7 1.5 1 1 0 1 1 1 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|118431768|ref|NP_148439.2| - 0.2 10.9 1.5 3.4 7.0 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|118431768|ref|NP_148439.2| - 0.35 10.8 4.6 1.7 8.6 3.2 2.0 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 RRN7 PF11781.3 gi|118431768|ref|NP_148439.2| - 0.7 9.4 5.2 1.1 8.7 1.0 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 CBS PF00571.23 gi|118431769|ref|NP_148440.2| - 1.1e-33 114.6 6.9 2.1e-09 37.0 0.0 4.2 4 0 0 4 4 4 4 CBS domain DeoRC PF00455.17 gi|118431769|ref|NP_148440.2| - 0.02 14.5 0.0 0.089 12.4 0.0 2.1 2 0 0 2 2 2 0 DeoR C terminal sensor domain DUF72 PF01904.13 gi|118431770|ref|NP_148442.2| - 3.4e-42 144.7 0.0 4.1e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 RskA PF10099.4 gi|118431770|ref|NP_148442.2| - 0.11 12.2 0.6 0.15 11.7 0.4 1.3 1 0 0 1 1 1 0 Anti-sigma-K factor rskA PCNA_N PF00705.13 gi|14601898|ref|NP_148443.1| - 2.9e-06 26.8 0.0 5.3e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|14601898|ref|NP_148443.1| - 2.1e-05 24.4 0.4 0.00082 19.2 0.1 2.9 1 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain B5 PF03484.10 gi|118431772|ref|NP_148444.2| - 0.018 14.8 0.2 0.22 11.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetase B5 domain DUF592 PF04574.8 gi|118431772|ref|NP_148444.2| - 0.024 14.2 0.4 0.037 13.5 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF592) EMG1 PF03587.9 gi|118431772|ref|NP_148444.2| - 0.025 13.8 0.0 0.031 13.5 0.0 1.1 1 0 0 1 1 1 0 EMG1/NEP1 methyltransferase Lipocalin_6 PF13944.1 gi|118431772|ref|NP_148444.2| - 0.079 13.0 0.1 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Lipocalin-like domain SSP160 PF06933.6 gi|118431773|ref|NP_148445.2| - 1.2 7.0 5.7 1.2 6.9 4.0 1.0 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Drf_GBD PF06371.8 gi|118431773|ref|NP_148445.2| - 7.9 5.7 9.3 14 4.9 6.4 1.4 1 0 0 1 1 1 0 Diaphanous GTPase-binding Domain AzlD PF05437.7 gi|118431774|ref|NP_148446.2| - 0.34 10.8 12.0 0.74 9.7 3.8 2.7 2 1 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) DEAD PF00270.24 gi|118431775|ref|NP_148447.2| - 1.3e-29 102.8 0.0 3.3e-29 101.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|118431775|ref|NP_148447.2| - 4.1e-27 95.1 0.2 1.1e-26 93.6 0.1 1.9 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|118431775|ref|NP_148447.2| - 3.1e-15 55.8 0.1 3.2e-14 52.5 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|118431775|ref|NP_148447.2| - 2.8e-06 27.2 0.0 7.9e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|118431775|ref|NP_148447.2| - 0.0013 18.4 1.7 0.42 10.3 0.4 3.1 2 0 0 2 2 2 2 Part of AAA domain AAA_25 PF13481.1 gi|118431775|ref|NP_148447.2| - 0.029 13.7 0.2 0.11 11.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|118431775|ref|NP_148447.2| - 0.073 13.2 0.1 0.84 9.7 0.0 2.9 2 1 0 2 2 2 0 AAA domain SNF2_N PF00176.18 gi|118431775|ref|NP_148447.2| - 0.075 11.8 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain DHH PF01368.15 gi|14601903|ref|NP_148448.1| - 0.0061 16.2 0.0 0.018 14.7 0.0 1.8 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|14601903|ref|NP_148448.1| - 0.041 13.5 0.2 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 DHHA1 domain tRNA-synt_2 PF00152.15 gi|118431776|ref|NP_148450.2| - 1e-86 290.7 0.1 1.3e-86 290.4 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|118431776|ref|NP_148450.2| - 8.6e-14 51.1 0.1 1.4e-13 50.4 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|118431776|ref|NP_148450.2| - 0.00088 18.5 0.2 0.85 8.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF61 PF01886.11 gi|14601906|ref|NP_148451.1| - 5.3e-14 52.1 0.0 6e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF885 PF05960.6 gi|14601906|ref|NP_148451.1| - 0.059 12.5 0.1 0.099 11.7 0.0 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Fibrillarin PF01269.12 gi|14601907|ref|NP_148452.1| - 2.4e-98 327.6 0.0 2.7e-98 327.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|14601907|ref|NP_148452.1| - 0.00035 20.1 0.0 0.00054 19.5 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|14601907|ref|NP_148452.1| - 0.015 14.8 0.0 0.026 14.0 0.0 1.5 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.13 gi|118431777|ref|NP_148453.2| - 6.4e-54 181.3 0.3 1.1e-53 180.6 0.2 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|118431777|ref|NP_148453.2| - 4.4e-23 80.8 0.3 3e-22 78.1 0.1 2.1 2 0 0 2 2 2 1 NOSIC (NUC001) domain UBA PF00627.26 gi|118431777|ref|NP_148453.2| - 0.0052 16.5 0.0 0.026 14.3 0.0 2.3 1 0 0 1 1 1 1 UBA/TS-N domain DUF3173 PF11372.3 gi|118431777|ref|NP_148453.2| - 0.011 15.2 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) HhH-GPD PF00730.20 gi|118431777|ref|NP_148453.2| - 0.08 13.2 0.5 0.23 11.7 0.3 2.1 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Tweety PF04906.8 gi|118431777|ref|NP_148453.2| - 0.13 10.6 0.1 0.83 7.9 0.0 2.0 1 1 1 2 2 2 0 Tweety RuvA_C PF07499.8 gi|118431777|ref|NP_148453.2| - 0.19 11.8 2.9 0.36 11.0 0.1 2.9 3 0 0 3 3 3 0 RuvA, C-terminal domain HHH_5 PF14520.1 gi|118431777|ref|NP_148453.2| - 2.3 8.4 5.8 1.4 9.1 1.0 3.1 2 1 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S30 PF04758.9 gi|14601909|ref|NP_148454.1| - 4.6e-11 42.3 3.4 5e-11 42.1 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Sas10 PF09368.5 gi|14601909|ref|NP_148454.1| - 0.029 14.5 4.1 0.049 13.8 3.0 1.4 1 1 0 1 1 1 0 Sas10 C-terminal domain Asparaginase PF00710.15 gi|14601910|ref|NP_148455.1| - 1.3e-97 326.5 0.0 1.5e-97 326.2 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Gly_reductase PF09338.6 gi|14601910|ref|NP_148455.1| - 0.014 13.6 0.0 0.02 13.0 0.0 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits Peripla_BP_4 PF13407.1 gi|14601910|ref|NP_148455.1| - 0.026 13.8 0.0 0.24 10.7 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein domain Calmodulin_bind PF07887.6 gi|14601910|ref|NP_148455.1| - 0.039 13.0 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Calmodulin binding protein-like PI-PLC-Y PF00387.14 gi|14601910|ref|NP_148455.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, Y domain GatB_N PF02934.10 gi|14601911|ref|NP_148456.1| - 1.6e-81 273.3 0.0 2.1e-81 272.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|14601911|ref|NP_148456.1| - 3.7e-23 81.8 0.1 6.6e-23 81.0 0.1 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|14601911|ref|NP_148456.1| - 2e-20 72.7 0.0 6.3e-20 71.1 0.0 1.9 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|14601911|ref|NP_148456.1| - 3.1e-07 30.3 0.2 6.5e-07 29.2 0.1 1.5 1 0 0 1 1 1 1 Yqey-like protein T2SF PF00482.18 gi|118431778|ref|NP_148457.2| - 3.7e-12 46.2 0.3 3.7e-12 46.2 0.2 2.1 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF417 PF04224.7 gi|118431778|ref|NP_148457.2| - 9.7 5.5 10.7 8.1 5.7 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function, DUF417 T2SF PF00482.18 gi|118431779|ref|NP_148458.2| - 8.8e-11 41.7 0.3 8.8e-11 41.7 0.2 2.3 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F TMEM237 PF15383.1 gi|118431779|ref|NP_148458.2| - 5.8 5.9 6.7 22 4.0 4.6 1.9 1 1 0 1 1 1 0 Transmembrane protein 237 T2SE PF00437.15 gi|118431780|ref|NP_148459.2| - 3e-48 164.0 0.0 6.1e-48 163.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|118431780|ref|NP_148459.2| - 2.6e-05 23.6 0.1 0.00014 21.3 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|118431780|ref|NP_148459.2| - 0.00091 19.5 0.0 0.0024 18.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|118431780|ref|NP_148459.2| - 0.0029 18.4 0.2 0.024 15.4 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|118431780|ref|NP_148459.2| - 0.0036 17.4 0.0 0.0089 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|118431780|ref|NP_148459.2| - 0.0073 16.6 0.3 0.032 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|118431780|ref|NP_148459.2| - 0.021 14.2 0.1 0.082 12.3 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|118431780|ref|NP_148459.2| - 0.023 14.4 0.1 0.069 12.9 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|118431780|ref|NP_148459.2| - 0.023 14.9 0.0 0.065 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|118431780|ref|NP_148459.2| - 0.024 14.0 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|118431780|ref|NP_148459.2| - 0.026 14.0 0.1 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase SRP54 PF00448.17 gi|118431780|ref|NP_148459.2| - 0.034 13.5 0.1 0.062 12.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|118431780|ref|NP_148459.2| - 0.046 13.2 0.3 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|118431780|ref|NP_148459.2| - 0.082 12.7 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit cobW PF02492.14 gi|118431780|ref|NP_148459.2| - 0.19 11.1 0.1 0.37 10.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain OsmC PF02566.14 gi|118431781|ref|NP_148460.2| - 2.4e-12 46.9 0.0 3.4e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein Gemin7 PF11095.3 gi|118431781|ref|NP_148460.2| - 0.12 12.1 0.1 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 Gem-associated protein 7 (Gemin7) SDH_sah PF01972.11 gi|118431782|ref|NP_148461.2| - 5.3e-116 386.3 0.0 6e-116 386.2 0.0 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|118431782|ref|NP_148461.2| - 4.7e-08 32.9 0.1 2.6e-07 30.4 0.0 1.9 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|118431782|ref|NP_148461.2| - 0.0024 17.6 0.0 0.0049 16.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 Fer2_2 PF01799.15 gi|14601917|ref|NP_148462.1| - 4.9e-33 112.8 0.0 4.9e-33 112.8 0.0 2.0 2 1 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|14601917|ref|NP_148462.1| - 2.9e-06 26.9 0.2 2.9e-06 26.9 0.2 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|14601917|ref|NP_148462.1| - 0.00063 19.5 0.1 0.00094 18.9 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|14601917|ref|NP_148462.1| - 0.13 12.0 3.7 3.6 7.4 2.6 2.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|118431783|ref|NP_148464.2| - 3.4e-162 540.5 0.0 4.1e-162 540.3 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|118431783|ref|NP_148464.2| - 2.6e-32 111.2 0.1 7.6e-32 109.6 0.0 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF865 PF05906.6 gi|118431783|ref|NP_148464.2| - 0.0094 15.5 2.6 0.0095 15.4 0.1 2.2 2 0 0 2 2 2 1 Herpesvirus-7 repeat of unknown function (DUF865) FAD_binding_5 PF00941.16 gi|14601920|ref|NP_148465.1| - 6.5e-55 185.1 0.0 9.2e-55 184.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|14601920|ref|NP_148465.1| - 1.9e-27 95.2 1.1 4e-27 94.1 0.8 1.6 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain AAA_5 PF07728.9 gi|118431784|ref|NP_148466.2| - 3.1e-12 46.3 0.0 4e-11 42.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|118431784|ref|NP_148466.2| - 2.3e-10 40.7 0.0 6e-10 39.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|118431784|ref|NP_148466.2| - 1.4e-09 37.6 0.0 0.0012 18.4 0.0 2.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|118431784|ref|NP_148466.2| - 6.2e-07 29.5 0.4 6.1e-06 26.3 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|118431784|ref|NP_148466.2| - 1.6e-05 25.0 0.0 8.7e-05 22.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|118431784|ref|NP_148466.2| - 0.00017 21.8 1.7 0.0072 16.6 1.2 3.2 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|118431784|ref|NP_148466.2| - 0.00025 20.1 0.4 0.029 13.3 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|118431784|ref|NP_148466.2| - 0.00043 19.9 0.1 0.0019 17.8 0.0 2.1 2 1 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|118431784|ref|NP_148466.2| - 0.00053 20.7 0.5 0.0018 19.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|118431784|ref|NP_148466.2| - 0.00079 19.4 0.0 0.049 13.6 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|118431784|ref|NP_148466.2| - 0.0021 17.7 0.1 0.013 15.2 0.1 2.2 1 1 0 1 1 1 1 NACHT domain AAA_2 PF07724.9 gi|118431784|ref|NP_148466.2| - 0.0034 17.3 0.0 0.0074 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|118431784|ref|NP_148466.2| - 0.0079 14.9 0.2 0.089 11.4 0.0 2.1 2 1 0 2 2 2 1 TIP49 C-terminus Sigma54_activat PF00158.21 gi|118431784|ref|NP_148466.2| - 0.008 15.6 0.0 2.1 7.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain UPF0079 PF02367.12 gi|118431784|ref|NP_148466.2| - 0.013 15.0 0.1 0.026 14.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|118431784|ref|NP_148466.2| - 0.025 14.7 0.0 0.068 13.3 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|118431784|ref|NP_148466.2| - 0.072 12.9 0.4 0.18 11.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|118431784|ref|NP_148466.2| - 0.096 11.8 0.0 0.15 11.2 0.0 1.3 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.10 gi|118431784|ref|NP_148466.2| - 0.11 12.2 0.0 3.7 7.2 0.0 2.3 2 1 0 2 2 2 0 NTPase VWA_CoxE PF05762.9 gi|118431785|ref|NP_148467.2| - 5.4e-63 212.1 3.3 8e-63 211.5 2.3 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|118431785|ref|NP_148467.2| - 2.1e-07 31.2 0.0 7.3e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|118431785|ref|NP_148467.2| - 0.018 14.7 0.0 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 von Willebrand factor type A domain TPR_14 PF13428.1 gi|118431785|ref|NP_148467.2| - 0.085 13.5 0.8 0.085 13.5 0.5 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_3 PF12804.2 gi|14601923|ref|NP_148468.1| - 7.2e-28 97.6 0.6 9.4e-28 97.3 0.4 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|14601923|ref|NP_148468.1| - 0.0014 18.2 0.0 0.0031 17.0 0.0 1.6 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COXG PF06240.8 gi|118431786|ref|NP_148470.2| - 1.4e-44 151.2 0.0 1.5e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|118431786|ref|NP_148470.2| - 2.9e-15 56.6 0.0 3.3e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|118431786|ref|NP_148470.2| - 2.1e-05 24.5 0.0 5.2e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|118431786|ref|NP_148470.2| - 0.00019 21.5 0.0 0.00022 21.3 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF3211 PF11485.3 gi|118431786|ref|NP_148470.2| - 0.0065 16.5 0.0 0.0096 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) XdhC_C PF13478.1 gi|14601927|ref|NP_148472.1| - 1.7e-24 86.7 0.0 2.4e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|14601927|ref|NP_148472.1| - 2.6e-18 65.4 0.4 5.1e-18 64.4 0.3 1.6 1 0 0 1 1 1 1 XdhC and CoxI family DNA_pol_B PF00136.16 gi|118431787|ref|NP_148473.2| - 5.8e-19 68.2 0.0 5.4e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 DNA polymerase family B ADH_zinc_N PF00107.21 gi|118431789|ref|NP_148480.2| - 6.8e-31 106.5 0.8 1.2e-30 105.7 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|118431789|ref|NP_148480.2| - 2.2e-30 104.5 0.1 3.6e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|118431789|ref|NP_148480.2| - 1.1e-12 48.9 2.5 2.9e-12 47.5 0.3 2.6 3 1 1 4 4 4 1 Zinc-binding dehydrogenase Methyltransf_11 PF08241.7 gi|118431789|ref|NP_148480.2| - 0.069 13.6 0.0 1.3 9.6 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain ThiF PF00899.16 gi|118431789|ref|NP_148480.2| - 0.096 12.5 0.2 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 ThiF family Amidohydro_2 PF04909.9 gi|14601936|ref|NP_148481.1| - 4.8e-33 114.8 0.7 6.4e-33 114.4 0.5 1.2 1 0 0 1 1 1 1 Amidohydrolase DUF59 PF01883.14 gi|118431790|ref|NP_148482.2| - 5.5e-11 42.2 0.0 1.5e-10 40.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF59 Phage_integrase PF00589.17 gi|118431790|ref|NP_148482.2| - 0.15 11.7 0.1 0.28 10.8 0.1 1.5 1 0 0 1 1 1 0 Phage integrase family Erythrovirus_X PF06795.6 gi|118431791|ref|YP_874932.1| - 0.41 10.6 4.2 1.5 8.8 0.4 2.1 2 0 0 2 2 2 0 Erythrovirus X protein DUF488 PF04343.8 gi|118431793|ref|NP_148485.2| - 5.9e-30 104.1 0.0 6.9e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 adh_short PF00106.20 gi|118431793|ref|NP_148485.2| - 0.15 11.9 0.2 5.7 6.8 0.0 2.7 2 1 1 3 3 3 0 short chain dehydrogenase Pur_DNA_glyco PF02245.11 gi|14601941|ref|NP_148486.1| - 7.7e-42 142.5 0.0 1.7e-41 141.4 0.0 1.5 1 1 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Aminotran_1_2 PF00155.16 gi|118431794|ref|NP_148487.2| - 2.1e-72 244.0 0.0 2.4e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|118431794|ref|NP_148487.2| - 1.8e-12 47.0 0.0 2.8e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|118431794|ref|NP_148487.2| - 9.8e-07 27.8 0.0 1.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|118431794|ref|NP_148487.2| - 2.1e-06 27.1 0.0 2.8e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|118431794|ref|NP_148487.2| - 0.00014 20.2 0.0 0.00023 19.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme BPD_transp_1 PF00528.17 gi|118431796|ref|NP_148490.2| - 1.8e-09 37.3 20.7 1.8e-09 37.3 14.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|118431797|ref|NP_148491.2| - 2e-09 37.2 23.0 2e-09 37.2 16.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ASFV_L11L PF05293.6 gi|118431797|ref|NP_148491.2| - 7.7 6.7 11.9 0.17 11.9 1.5 2.9 3 0 0 3 3 3 0 African swine fever virus (ASFV) L11L protein SBP_bac_1 PF01547.20 gi|118431798|ref|NP_148492.2| - 1.2e-54 186.2 5.7 1.5e-54 185.8 4.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|118431798|ref|NP_148492.2| - 6.5e-06 26.0 5.0 6.5e-06 26.0 3.5 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Herpes_pp85 PF04637.7 gi|118431798|ref|NP_148492.2| - 0.017 13.4 0.2 0.024 12.9 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) TFIIB PF00382.14 gi|118431798|ref|NP_148492.2| - 4.7 7.0 5.5 1.6 8.6 0.7 2.5 2 1 1 3 3 3 0 Transcription factor TFIIB repeat Cas_APE2256 PF09651.5 gi|118431799|ref|NP_148493.2| - 1.1e-35 122.2 0.1 2.3e-35 121.2 0.0 1.5 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) SBP_bac_5 PF00496.17 gi|14601949|ref|NP_148494.1| - 1.2e-88 297.5 0.5 1.4e-88 297.2 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|14601950|ref|NP_148495.1| - 8.4e-42 142.7 11.4 8.4e-42 142.7 7.9 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|14601951|ref|NP_148496.1| - 2.7e-26 92.2 13.0 2.7e-26 92.2 9.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|14601951|ref|NP_148496.1| - 0.00035 19.8 0.2 0.00035 19.8 0.2 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|118431800|ref|NP_148497.2| - 1.1e-28 100.2 0.0 1.5e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|118431800|ref|NP_148497.2| - 5.5e-21 74.6 0.5 9.1e-21 73.9 0.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|118431800|ref|NP_148497.2| - 2.4e-11 44.1 0.0 1.3e-08 35.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|118431800|ref|NP_148497.2| - 0.0001 21.6 0.5 0.026 13.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|118431800|ref|NP_148497.2| - 0.00013 21.4 0.0 0.00022 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|118431800|ref|NP_148497.2| - 0.0007 19.0 0.2 0.011 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|118431800|ref|NP_148497.2| - 0.0011 18.1 0.0 0.068 12.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|118431800|ref|NP_148497.2| - 0.0057 16.7 0.2 0.48 10.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|118431800|ref|NP_148497.2| - 0.019 14.9 0.2 0.039 13.9 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|118431800|ref|NP_148497.2| - 0.02 14.3 0.1 0.22 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|118431800|ref|NP_148497.2| - 0.062 12.1 0.1 0.13 11.1 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|118431800|ref|NP_148497.2| - 0.097 12.1 0.1 1.6 8.2 0.0 2.1 1 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|118431800|ref|NP_148497.2| - 0.14 12.4 0.1 0.36 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|118431800|ref|NP_148497.2| - 0.16 10.5 0.9 3.2 6.2 0.1 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|118431800|ref|NP_148497.2| - 0.2 11.2 0.2 2.3 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|118431801|ref|NP_148498.2| - 1.7e-30 106.0 0.0 2.3e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|118431801|ref|NP_148498.2| - 2.2e-17 63.1 0.7 3.9e-17 62.3 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|118431801|ref|NP_148498.2| - 9.3e-10 38.9 0.0 5.2e-05 23.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|118431801|ref|NP_148498.2| - 0.0012 19.0 1.6 0.025 14.7 1.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|118431801|ref|NP_148498.2| - 0.0029 17.0 1.0 0.026 13.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|118431801|ref|NP_148498.2| - 0.0064 15.6 0.8 0.0083 15.2 0.1 1.5 2 0 0 2 2 2 1 KaiC AAA_16 PF13191.1 gi|118431801|ref|NP_148498.2| - 0.0082 16.1 0.1 0.013 15.5 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|118431801|ref|NP_148498.2| - 0.017 13.9 0.1 0.027 13.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.1 gi|118431801|ref|NP_148498.2| - 0.025 14.1 0.1 0.045 13.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|118431801|ref|NP_148498.2| - 0.041 13.5 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.14 gi|118431801|ref|NP_148498.2| - 0.045 12.9 0.0 3 6.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|118431801|ref|NP_148498.2| - 0.046 13.2 0.0 0.056 12.9 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|118431801|ref|NP_148498.2| - 0.056 12.8 0.1 1.4 8.3 0.0 2.3 3 0 0 3 3 3 0 AAA-like domain ABC_ATPase PF09818.4 gi|118431801|ref|NP_148498.2| - 0.076 11.5 2.0 0.23 9.9 0.2 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|118431801|ref|NP_148498.2| - 0.084 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|118431801|ref|NP_148498.2| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.1 gi|118431801|ref|NP_148498.2| - 0.13 10.6 0.0 2 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|118431801|ref|NP_148498.2| - 0.14 11.1 0.0 11 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|118431801|ref|NP_148498.2| - 0.16 12.7 1.9 0.5 11.2 1.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|118431801|ref|NP_148498.2| - 0.17 12.1 0.1 0.23 11.7 0.1 1.1 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|118431801|ref|NP_148498.2| - 0.17 11.3 0.2 0.31 10.4 0.0 1.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Lactamase_B PF00753.22 gi|118431802|ref|NP_148499.2| - 3.9e-07 29.9 1.0 7.3e-06 25.7 0.7 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|118431802|ref|NP_148499.2| - 0.00072 19.1 0.0 0.0019 17.7 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Pyridoxal_deC PF00282.14 gi|118431804|ref|NP_148500.2| - 3.2e-19 68.6 0.0 4.6e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|118431804|ref|NP_148500.2| - 2.8e-08 32.9 0.0 1.2e-07 30.8 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|118431804|ref|NP_148500.2| - 0.00014 20.9 0.0 0.00062 18.8 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|118431804|ref|NP_148500.2| - 0.0039 16.2 0.0 0.0058 15.7 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|118431804|ref|NP_148500.2| - 0.036 12.6 0.0 0.051 12.1 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain MFS_1 PF07690.11 gi|118431805|ref|NP_148501.2| - 5.1e-22 78.0 33.1 5.1e-22 78.0 22.9 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC_tran PF00005.22 gi|118431807|ref|NP_148503.2| - 1.4e-16 61.0 0.0 3.7e-16 59.6 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431807|ref|NP_148503.2| - 1.4e-13 51.4 0.1 2.1e-09 37.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|118431807|ref|NP_148503.2| - 4.1e-07 29.7 0.9 0.013 14.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain Acetyltransf_1 PF00583.19 gi|118431807|ref|NP_148503.2| - 3.2e-06 27.0 0.3 1.2e-05 25.2 0.2 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_15 PF13175.1 gi|118431807|ref|NP_148503.2| - 3.4e-06 26.3 0.0 0.0014 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|118431807|ref|NP_148503.2| - 5.9e-06 26.4 0.0 1.6e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.1 gi|118431807|ref|NP_148503.2| - 5.7e-05 23.1 0.0 0.00017 21.7 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_16 PF13191.1 gi|118431807|ref|NP_148503.2| - 8.2e-05 22.6 0.7 0.0012 18.8 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|118431807|ref|NP_148503.2| - 0.00021 20.7 0.4 0.00073 18.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|118431807|ref|NP_148503.2| - 0.00042 19.6 0.0 0.047 12.9 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|118431807|ref|NP_148503.2| - 0.0094 15.6 0.1 0.023 14.4 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|118431807|ref|NP_148503.2| - 0.01 15.3 0.1 0.86 9.0 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|118431807|ref|NP_148503.2| - 0.012 15.1 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|118431807|ref|NP_148503.2| - 0.028 13.5 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 GNAT_acetyltr_2 PF13718.1 gi|118431807|ref|NP_148503.2| - 0.034 13.4 0.1 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 GNAT acetyltransferase 2 AAA_23 PF13476.1 gi|118431807|ref|NP_148503.2| - 0.037 14.3 0.0 0.071 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|118431807|ref|NP_148503.2| - 0.068 12.8 0.2 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|118431807|ref|NP_148503.2| - 0.07 13.3 0.0 0.33 11.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AFG1_ATPase PF03969.11 gi|118431807|ref|NP_148503.2| - 0.08 11.7 0.0 0.17 10.6 0.0 1.4 1 0 0 1 1 1 0 AFG1-like ATPase NACHT PF05729.7 gi|118431807|ref|NP_148503.2| - 0.085 12.5 0.9 0.23 11.1 0.6 1.7 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|118431807|ref|NP_148503.2| - 0.13 13.0 1.3 0.46 11.3 0.5 2.3 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|118431807|ref|NP_148503.2| - 0.13 12.0 2.5 0.091 12.6 0.2 2.1 2 1 0 2 2 1 0 AAA domain cobW PF02492.14 gi|118431807|ref|NP_148503.2| - 0.15 11.4 0.8 0.26 10.7 0.6 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|118431807|ref|NP_148503.2| - 0.17 11.4 2.2 0.18 11.3 0.2 1.9 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|118431807|ref|NP_148503.2| - 0.24 11.1 2.8 0.5 10.1 0.5 2.5 2 0 0 2 2 2 0 Part of AAA domain Dynamin_N PF00350.18 gi|118431807|ref|NP_148503.2| - 0.26 11.0 0.2 0.48 10.2 0.1 1.4 1 0 0 1 1 1 0 Dynamin family Adeno_IVa2 PF02456.10 gi|118431807|ref|NP_148503.2| - 0.29 9.7 0.0 0.42 9.1 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein Thioredoxin PF00085.15 gi|118431808|ref|NP_148504.2| - 2.4e-13 49.6 0.0 3.5e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|118431808|ref|NP_148504.2| - 7.7e-07 29.2 0.4 1.6e-05 25.0 0.1 2.5 2 1 0 2 2 2 1 Thioredoxin-like domain DsbD PF02683.10 gi|118431808|ref|NP_148504.2| - 0.0031 17.1 22.0 0.0031 17.1 15.3 2.0 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|118431808|ref|NP_148504.2| - 0.0039 16.9 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|118431808|ref|NP_148504.2| - 0.022 14.8 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|118431808|ref|NP_148504.2| - 0.16 11.9 0.6 10 6.1 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin Cytochrom_C_asm PF01578.15 gi|14601960|ref|NP_148505.1| - 6.3e-14 52.0 16.2 6.3e-14 52.0 11.2 4.0 3 2 1 4 4 4 1 Cytochrome C assembly protein PA14 PF07691.7 gi|14601961|ref|NP_148506.1| - 0.002 17.7 0.0 0.0056 16.3 0.0 1.8 1 0 0 1 1 1 1 PA14 domain DsbC_N PF10411.4 gi|14601961|ref|NP_148506.1| - 0.19 11.0 2.2 7.5 5.8 0.1 3.3 3 0 0 3 3 3 0 Disulfide bond isomerase protein N-terminus CN_hydrolase PF00795.17 gi|118431809|ref|NP_148508.2| - 4.6e-18 65.2 0.0 8e-18 64.4 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF1081 PF06448.6 gi|118431809|ref|NP_148508.2| - 0.091 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1081) AhpC-TSA PF00578.16 gi|14601964|ref|NP_148509.1| - 1.2e-33 115.4 0.0 2.4e-33 114.4 0.0 1.5 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|14601964|ref|NP_148509.1| - 4.4e-14 52.2 0.0 5.9e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|14601964|ref|NP_148509.1| - 6.3e-09 35.3 0.0 1.2e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.1 gi|14601964|ref|NP_148509.1| - 0.0055 16.6 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Bowman-Birk_leg PF00228.15 gi|14601964|ref|NP_148509.1| - 0.037 13.8 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Bowman-Birk serine protease inhibitor family Sel1 PF08238.7 gi|14601964|ref|NP_148509.1| - 0.11 13.1 0.1 0.39 11.4 0.0 1.9 1 0 0 1 1 1 0 Sel1 repeat Lon_C PF05362.8 gi|118431810|ref|NP_148510.2| - 5.1e-10 38.9 0.0 1.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF357 PF04010.8 gi|118431811|ref|NP_148511.2| - 1e-21 76.4 2.9 1.9e-21 75.5 2.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|118431811|ref|NP_148511.2| - 4.2e-09 36.6 0.0 1.3e-08 35.0 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase DUF4398 PF14346.1 gi|118431811|ref|NP_148511.2| - 1.2 9.2 4.2 2.3 8.3 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) Metallophos_2 PF12850.2 gi|118431812|ref|NP_148512.2| - 2.6e-16 59.8 0.0 3.4e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|118431812|ref|NP_148512.2| - 8.8e-08 31.6 0.0 1.6e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|118431812|ref|NP_148512.2| - 2.7e-07 30.1 0.1 1.4e-06 27.8 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase AMP-binding PF00501.23 gi|118431813|ref|NP_148513.2| - 4.9e-102 341.4 0.0 6.2e-102 341.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|118431813|ref|NP_148513.2| - 2.1e-17 63.8 1.1 9e-17 61.7 0.8 2.2 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain YHS PF04945.8 gi|118431814|ref|YP_874935.1| - 4.9e-19 67.8 1.2 8.1e-19 67.2 0.8 1.4 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|118431814|ref|YP_874935.1| - 1.3e-05 25.2 1.4 2e-05 24.6 0.9 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|118431814|ref|YP_874935.1| - 0.00043 19.8 0.9 0.00083 18.9 0.6 1.6 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif PALP PF00291.20 gi|14601969|ref|NP_148514.1| - 5.8e-77 258.9 2.5 7e-77 258.6 1.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CdhD PF03599.11 gi|14601969|ref|NP_148514.1| - 0.0079 14.7 0.0 0.026 13.0 0.0 1.7 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF1936 PF09151.5 gi|14601969|ref|NP_148514.1| - 0.12 11.8 0.5 0.31 10.5 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) Ycf54 PF10674.4 gi|14601970|ref|NP_148515.1| - 0.0056 16.7 1.3 0.01 15.9 0.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2488) Hira PF07569.6 gi|14601970|ref|NP_148515.1| - 0.087 12.0 3.3 0.13 11.4 0.1 2.0 2 0 0 2 2 2 0 TUP1-like enhancer of split DUF1488 PF07369.6 gi|14601970|ref|NP_148515.1| - 0.11 12.3 1.3 0.53 10.1 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1488) TBPIP PF07106.8 gi|14601970|ref|NP_148515.1| - 1.4 8.4 5.4 12 5.3 1.1 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GTPase_Cys_C PF12631.2 gi|14601970|ref|NP_148515.1| - 2.9 8.3 5.2 17 5.8 0.2 2.5 2 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Adenosine_kin PF04008.9 gi|118431815|ref|NP_148516.2| - 4.6e-74 247.0 0.1 5.2e-74 246.9 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Peptidase_S9 PF00326.16 gi|118431816|ref|NP_148517.2| - 1.6e-51 174.5 0.2 2.2e-51 174.0 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|118431816|ref|NP_148517.2| - 1.8e-10 40.6 1.4 6.3e-07 29.0 0.6 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.2 gi|118431816|ref|NP_148517.2| - 1.4e-09 37.8 0.1 4e-09 36.3 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|118431816|ref|NP_148517.2| - 5.1e-05 21.9 1.1 0.0024 16.4 0.8 2.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) PD40 PF07676.7 gi|118431816|ref|NP_148517.2| - 6e-05 22.6 0.3 0.00015 21.3 0.2 1.7 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat Abhydrolase_6 PF12697.2 gi|118431816|ref|NP_148517.2| - 6.1e-05 23.0 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase_phd PF10503.4 gi|118431816|ref|NP_148517.2| - 0.0018 17.5 0.0 0.0054 16.0 0.0 1.8 1 0 0 1 1 1 1 Esterase PHB depolymerase BAAT_C PF08840.6 gi|118431816|ref|NP_148517.2| - 0.091 12.4 0.1 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2048 PF09752.4 gi|118431816|ref|NP_148517.2| - 0.095 11.5 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) DLH PF01738.13 gi|118431816|ref|NP_148517.2| - 0.14 11.4 0.3 0.42 9.8 0.2 1.8 1 1 0 1 1 1 0 Dienelactone hydrolase family NTP_transferase PF00483.18 gi|14601973|ref|NP_148518.1| - 1.3e-34 119.6 0.0 1.5e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|14601973|ref|NP_148518.1| - 7.5e-13 48.8 0.0 9e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|14601973|ref|NP_148518.1| - 0.00022 20.8 0.0 0.00032 20.2 0.0 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Lactamase_B_2 PF12706.2 gi|118431818|ref|NP_148520.2| - 2.1e-08 33.9 0.0 9.8e-07 28.5 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|118431818|ref|NP_148520.2| - 4.4e-08 33.1 0.0 2.9e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 DNA repair metallo-beta-lactamase Lactamase_B PF00753.22 gi|118431818|ref|NP_148520.2| - 7.1e-06 25.8 0.3 1.5e-05 24.7 0.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|118431818|ref|NP_148520.2| - 0.00063 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Pec_lyase_N PF04431.8 gi|118431818|ref|NP_148520.2| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Pectate lyase, N terminus GlutR_N PF05201.10 gi|14601976|ref|NP_148521.1| - 9.5e-34 116.1 0.0 2e-33 115.1 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|14601976|ref|NP_148521.1| - 2.4e-22 79.5 0.0 3.8e-22 78.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|14601976|ref|NP_148521.1| - 4e-08 33.1 0.7 9.1e-08 31.9 0.5 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|14601976|ref|NP_148521.1| - 0.016 15.6 0.0 0.041 14.4 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_9 PF13454.1 gi|14601976|ref|NP_148521.1| - 0.087 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding DUF2335 PF10097.4 gi|14601976|ref|NP_148521.1| - 0.15 11.6 0.6 0.48 10.0 0.5 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2335) Porphobil_deam PF01379.15 gi|118431819|ref|NP_148522.2| - 1.5e-52 177.6 0.0 1.9e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|118431819|ref|NP_148522.2| - 1.6e-09 37.7 0.0 2.9e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain PD40 PF07676.7 gi|118431819|ref|NP_148522.2| - 0.023 14.3 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat Aminotran_3 PF00202.16 gi|118431820|ref|NP_148523.2| - 6.7e-64 215.8 0.0 8.7e-64 215.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|118431820|ref|NP_148523.2| - 3.5e-05 22.9 0.0 4.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II ALAD PF00490.16 gi|118431821|ref|NP_148524.2| - 1.3e-128 428.5 0.0 1.4e-128 428.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase tRNA-synt_2d PF01409.15 gi|118431822|ref|NP_148525.2| - 9.3e-83 277.2 0.0 1.2e-82 276.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|118431822|ref|NP_148525.2| - 2.8e-05 23.0 0.1 0.64 8.7 0.0 3.6 4 0 0 4 4 4 2 tRNA synthetases class II (D, K and N) tRNA-synt_His PF13393.1 gi|118431822|ref|NP_148525.2| - 6.7e-05 22.0 0.7 0.19 10.7 0.0 3.2 3 0 0 3 3 3 2 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|118431822|ref|NP_148525.2| - 0.00056 19.5 0.0 0.01 15.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR_2 PF12802.2 gi|118431822|ref|NP_148525.2| - 0.0037 16.8 8.2 0.0063 16.1 0.1 3.8 4 0 0 4 4 4 1 MarR family HTH_27 PF13463.1 gi|118431822|ref|NP_148525.2| - 0.014 15.7 2.1 1.4 9.2 0.1 3.3 3 0 0 3 3 3 0 Winged helix DNA-binding domain NQRA PF05896.6 gi|118431822|ref|NP_148525.2| - 0.079 12.1 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HTH_45 PF14947.1 gi|118431822|ref|NP_148525.2| - 0.094 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|118431822|ref|NP_148525.2| - 0.14 11.8 0.9 0.54 10.0 0.2 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B5 PF03484.10 gi|14601981|ref|NP_148526.1| - 1.7e-19 69.3 0.0 9.1e-15 54.2 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|14601981|ref|NP_148526.1| - 3e-06 26.8 0.0 6.6e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 B3/4 domain GCHY-1 PF02649.9 gi|14601982|ref|NP_148527.1| - 7.2e-47 159.9 0.0 8.3e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|14601982|ref|NP_148527.1| - 2.9e-05 24.1 0.0 6.8e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 Dihydroneopterin aldolase APH PF01636.18 gi|118431823|ref|NP_148528.2| - 1.5e-13 51.0 2.0 2.9e-13 50.1 1.4 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family DUF2797 PF10977.3 gi|118431824|ref|NP_148529.2| - 4e-08 33.1 0.1 6.3e-08 32.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) TctB PF07331.6 gi|118431825|ref|YP_874937.1| - 0.009 15.6 0.6 0.0097 15.5 0.4 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF3989 PF13150.1 gi|118431825|ref|YP_874937.1| - 0.01 15.2 1.4 0.01 15.2 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3989) DUF1469 PF07332.6 gi|118431825|ref|YP_874937.1| - 0.027 14.1 2.4 0.034 13.8 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) FtsX PF02687.16 gi|118431825|ref|YP_874937.1| - 0.03 14.0 2.5 0.035 13.8 1.7 1.0 1 0 0 1 1 1 0 FtsX-like permease family DUF1240 PF06836.7 gi|118431825|ref|YP_874937.1| - 0.059 13.6 0.1 0.073 13.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1240) DUF4492 PF14899.1 gi|118431825|ref|YP_874937.1| - 0.061 12.8 0.0 0.08 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4492) ATP-synt_C PF00137.16 gi|118431825|ref|YP_874937.1| - 0.34 10.8 5.1 0.49 10.3 3.6 1.2 1 0 0 1 1 1 0 ATP synthase subunit C DUF3188 PF11384.3 gi|118431825|ref|YP_874937.1| - 0.64 9.6 3.7 0.59 9.7 1.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3188) DUF202 PF02656.10 gi|118431825|ref|YP_874937.1| - 0.68 10.1 6.6 1.2 9.4 4.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.3 gi|118431825|ref|YP_874937.1| - 1.7 8.7 6.6 2.8 8.0 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Shal-type PF11601.3 gi|14601986|ref|NP_148531.1| - 0.0026 17.2 0.4 0.0055 16.1 0.3 1.6 1 0 0 1 1 1 1 Shal-type voltage-gated potassium channels DUF1206 PF06724.6 gi|118431826|ref|YP_874938.1| - 0.74 9.6 8.3 0.16 11.7 1.5 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) SseC PF04888.7 gi|118431826|ref|YP_874938.1| - 2.7 7.2 6.4 3.3 6.9 4.4 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family PALP PF00291.20 gi|14601988|ref|NP_148533.1| - 9e-41 140.0 0.2 1.1e-40 139.8 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1156 PF06634.7 gi|14601988|ref|NP_148533.1| - 0.029 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1156) tRNA-synt_1c PF00749.16 gi|118431827|ref|NP_148534.2| - 2.4e-69 233.4 0.0 3.1e-69 233.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|118431827|ref|NP_148534.2| - 5.9e-21 74.9 0.0 9.5e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF447 PF04289.7 gi|118431828|ref|NP_148536.2| - 0.045 13.3 0.0 0.12 11.9 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF447) MAF_flag10 PF01973.13 gi|14601992|ref|NP_148537.1| - 0.0095 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Ribosomal_L35Ae PF01247.13 gi|118431829|ref|NP_148538.2| - 9.1e-13 47.8 0.4 2.6e-12 46.3 0.3 1.6 1 1 0 1 1 1 1 Ribosomal protein L35Ae ATP-synt_C PF00137.16 gi|118431830|ref|NP_148540.2| - 2.1e-20 72.3 15.8 2.1e-20 72.3 10.9 1.9 2 0 0 2 2 2 1 ATP synthase subunit C TrbC PF04956.8 gi|118431830|ref|NP_148540.2| - 0.65 10.0 5.7 0.81 9.7 3.9 1.3 1 1 0 1 1 1 0 TrbC/VIRB2 family Rhomboid PF01694.17 gi|118431830|ref|NP_148540.2| - 1.2 9.1 7.4 0.65 10.0 3.7 1.6 1 1 1 2 2 2 0 Rhomboid family HGTP_anticodon PF03129.15 gi|14601997|ref|NP_148542.1| - 4.1e-21 74.7 0.0 6.8e-21 74.0 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|14601997|ref|NP_148542.1| - 1.1e-20 73.9 0.4 1.7e-20 73.2 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|14601997|ref|NP_148542.1| - 8.8e-16 57.5 0.1 1.6e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Rad50_zn_hook PF04423.9 gi|14601997|ref|NP_148542.1| - 0.35 10.3 1.6 0.82 9.1 1.1 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif Ribosomal_S26e PF01283.14 gi|118431831|ref|YP_874939.1| - 3.8e-31 107.6 3.0 4.4e-31 107.4 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|118431831|ref|YP_874939.1| - 0.025 14.3 1.3 0.11 12.2 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|118431831|ref|YP_874939.1| - 0.054 13.2 0.7 0.097 12.3 0.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|118431831|ref|YP_874939.1| - 0.064 12.9 0.6 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Sgf11 PF08209.6 gi|118431831|ref|YP_874939.1| - 0.27 10.5 0.1 0.27 10.5 0.1 1.9 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-dskA_traR PF01258.12 gi|118431831|ref|YP_874939.1| - 0.43 10.3 3.6 7.3 6.4 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|118431831|ref|YP_874939.1| - 5.1 6.4 6.6 0.21 10.8 0.5 1.8 2 0 0 2 2 2 0 zinc-ribbon domain HTH_1 PF00126.22 gi|118431832|ref|NP_148546.2| - 1.4e-05 24.7 0.7 6.5e-05 22.5 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Mrr_cat PF04471.7 gi|118431832|ref|NP_148546.2| - 9.1e-05 22.2 0.1 0.00021 21.0 0.0 1.6 1 1 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.12 gi|118431832|ref|NP_148546.2| - 0.0009 19.1 0.1 0.0024 17.7 0.0 1.8 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF91 PF01939.11 gi|118431832|ref|NP_148546.2| - 0.0018 17.4 0.2 0.0033 16.6 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF91 Hjc PF01870.13 gi|118431832|ref|NP_148546.2| - 0.0066 16.0 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Dimerisation PF08100.6 gi|118431832|ref|NP_148546.2| - 0.019 14.7 0.0 0.096 12.5 0.0 2.2 2 0 0 2 2 2 0 Dimerisation domain UPF0449 PF15136.1 gi|118431832|ref|NP_148546.2| - 0.03 14.5 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 HTH_24 PF13412.1 gi|118431832|ref|NP_148546.2| - 0.035 13.5 1.1 0.17 11.3 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding COG5 PF10392.4 gi|118431832|ref|NP_148546.2| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 Golgi transport complex subunit 5 HTH_20 PF12840.2 gi|118431832|ref|NP_148546.2| - 0.072 12.9 0.5 0.18 11.6 0.3 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4143 PF13635.1 gi|118431832|ref|NP_148546.2| - 0.09 12.9 0.1 0.52 10.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4143) DUF3194 PF11419.3 gi|118431832|ref|NP_148546.2| - 0.098 12.8 1.0 0.27 11.4 0.7 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) HTH_AsnC-type PF13404.1 gi|118431832|ref|NP_148546.2| - 0.27 10.7 4.6 0.78 9.3 0.2 3.1 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Clp_N PF02861.15 gi|118431832|ref|NP_148546.2| - 0.71 9.8 3.4 12 5.9 0.0 3.5 3 1 1 4 4 4 0 Clp amino terminal domain NMD3 PF04981.8 gi|118431834|ref|NP_148547.2| - 4e-40 137.3 0.0 4.6e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 NMD3 family RNA_pol_N PF01194.12 gi|118431834|ref|NP_148547.2| - 0.33 10.9 2.3 0.47 10.5 0.0 2.3 3 0 0 3 3 3 0 RNA polymerases N / 8 kDa subunit Ribosomal_L37e PF01907.14 gi|118431834|ref|NP_148547.2| - 2.3 8.1 6.1 16 5.3 0.0 3.1 3 0 0 3 3 3 0 Ribosomal protein L37e DUF402 PF04167.8 gi|118431836|ref|NP_148549.2| - 2.6e-19 68.8 0.0 4.6e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|118431836|ref|NP_148549.2| - 0.0004 19.6 0.0 0.00054 19.2 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family UPF0147 PF03685.8 gi|14602005|ref|NP_148550.1| - 6.3e-36 122.1 0.4 7e-36 121.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_PBS PF03130.11 gi|14602005|ref|NP_148550.1| - 0.0087 16.4 0.7 0.02 15.3 0.5 1.7 1 1 0 1 1 1 1 PBS lyase HEAT-like repeat HEAT_2 PF13646.1 gi|14602005|ref|NP_148550.1| - 0.012 15.8 0.3 0.034 14.4 0.2 1.6 1 1 0 1 1 1 0 HEAT repeats UPF0253 PF06786.7 gi|14602005|ref|NP_148550.1| - 0.043 13.9 0.1 3 8.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) SAM_adeno_trans PF01887.11 gi|14602006|ref|NP_148551.1| - 8.3e-85 283.9 0.0 9.6e-85 283.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase BPL_LplA_LipB PF03099.14 gi|14602008|ref|NP_148553.1| - 6.2e-20 71.4 0.1 1.1e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_LplA_LipB PF03099.14 gi|118431838|ref|NP_148554.2| - 2e-20 73.0 0.0 2.7e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.16 gi|118431839|ref|NP_148555.2| - 4.1e-13 49.8 0.0 1.1e-12 48.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Biotin_lipoyl PF00364.17 gi|118431840|ref|NP_148556.2| - 1.4e-13 50.2 2.5 2e-13 49.7 1.7 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|118431840|ref|NP_148556.2| - 7.4e-06 25.5 4.1 0.00036 20.1 0.2 2.2 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.1 gi|118431840|ref|NP_148556.2| - 7e-05 22.4 0.3 9.4e-05 22.0 0.2 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.14 gi|118431840|ref|NP_148556.2| - 0.00067 19.3 1.6 0.00091 18.9 0.9 1.4 1 1 1 2 2 2 1 Glycine cleavage H-protein QRPTase_N PF02749.11 gi|118431840|ref|NP_148556.2| - 0.0022 17.7 0.4 1.4 8.7 0.1 2.1 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain HlyD PF00529.15 gi|118431840|ref|NP_148556.2| - 0.0041 16.4 3.2 0.0041 16.4 0.2 1.9 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|118431840|ref|NP_148556.2| - 0.0083 16.4 0.7 0.029 14.7 0.2 1.8 1 1 1 2 2 2 1 HlyD family secretion protein NQRA PF05896.6 gi|118431840|ref|NP_148556.2| - 0.038 13.1 0.5 0.043 13.0 0.3 1.0 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PYNP_C PF07831.8 gi|118431840|ref|NP_148556.2| - 0.051 13.0 0.1 0.086 12.3 0.1 1.3 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain HlyD_2 PF12700.2 gi|118431840|ref|NP_148556.2| - 0.075 12.1 2.3 3.1 6.8 0.1 2.0 1 1 1 2 2 2 0 HlyD family secretion protein DUF2118 PF09891.4 gi|118431840|ref|NP_148556.2| - 0.087 12.5 0.4 0.11 12.1 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) OMPdecase PF00215.19 gi|14602012|ref|NP_148557.1| - 2.4e-29 102.3 0.0 3e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF3693 PF12472.3 gi|14602012|ref|NP_148557.1| - 0.029 13.9 0.8 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 Phage related protein Pribosyltran PF00156.22 gi|118431841|ref|NP_148558.2| - 8.7e-16 57.7 0.4 1.8e-15 56.7 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|118431841|ref|NP_148558.2| - 0.0051 16.0 0.0 0.0065 15.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|118431841|ref|NP_148558.2| - 0.1 11.8 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Isochorismatase PF00857.15 gi|118431842|ref|NP_148559.2| - 2.3e-43 148.1 0.0 2.8e-43 147.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family MobB PF03205.9 gi|118431842|ref|NP_148559.2| - 0.03 14.0 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CCG PF02754.11 gi|118431843|ref|NP_148560.2| - 2.4e-10 40.2 0.0 1.3e-08 34.7 0.0 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Acyl-CoA_dh_1 PF00441.19 gi|14602016|ref|NP_148561.1| - 4.2e-33 114.5 3.1 6.6e-33 113.9 2.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|14602016|ref|NP_148561.1| - 2e-16 60.5 0.2 5.2e-16 59.2 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|14602016|ref|NP_148561.1| - 4.4e-16 58.1 0.1 8e-16 57.2 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|14602016|ref|NP_148561.1| - 1.1e-14 54.8 3.0 1.6e-14 54.2 2.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain NfeD PF01957.13 gi|118431844|ref|NP_148562.2| - 1.4e-08 35.0 6.2 1.5e-08 34.8 4.3 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding TOBE PF03459.12 gi|118431844|ref|NP_148562.2| - 0.88 9.7 4.3 0.44 10.6 1.2 1.9 2 0 0 2 2 2 0 TOBE domain Prok-JAB PF14464.1 gi|118431845|ref|NP_148563.2| - 0.024 14.2 0.0 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic homologs of the JAB domain HD_3 PF13023.1 gi|118431846|ref|NP_148564.2| - 5.8e-15 55.4 0.0 7.5e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|118431846|ref|NP_148564.2| - 2.4e-06 27.5 0.1 5.7e-06 26.3 0.1 1.7 1 1 0 1 1 1 1 HD domain Abhydrolase_6 PF12697.2 gi|118431848|ref|NP_148565.2| - 7.5e-35 120.8 6.6 8.7e-35 120.6 4.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|118431848|ref|NP_148565.2| - 4.9e-18 65.2 0.5 6.7e-18 64.8 0.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|118431848|ref|NP_148565.2| - 1e-12 48.1 0.0 1.4e-09 37.8 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|118431848|ref|NP_148565.2| - 1.6e-07 31.0 0.0 8.7e-07 28.7 0.0 2.2 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_2 PF02230.11 gi|118431848|ref|NP_148565.2| - 0.0038 16.6 0.1 2.7 7.3 0.0 2.2 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Abhydro_lipase PF04083.11 gi|118431848|ref|NP_148565.2| - 0.041 13.2 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Thioesterase PF00975.15 gi|118431848|ref|NP_148565.2| - 0.056 13.6 0.4 0.17 12.0 0.3 1.9 1 1 0 1 1 1 0 Thioesterase domain Peripla_BP_6 PF13458.1 gi|118431848|ref|NP_148565.2| - 0.073 12.4 0.1 0.14 11.4 0.1 1.4 1 1 0 1 1 1 0 Periplasmic binding protein Carb_kinase PF01256.12 gi|118431849|ref|NP_148566.2| - 6.8e-42 143.4 0.1 1.3e-41 142.5 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|118431849|ref|NP_148566.2| - 1.7e-40 138.3 1.2 2.9e-40 137.6 0.8 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus NAD_binding_10 PF13460.1 gi|118431849|ref|NP_148566.2| - 0.045 13.7 4.9 0.15 12.0 0.8 2.4 2 1 0 2 2 2 0 NADH(P)-binding Fcf1 PF04900.7 gi|118431850|ref|NP_148567.2| - 4.3e-17 62.0 0.0 5.4e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Fcf1 NYN_YacP PF05991.6 gi|118431850|ref|NP_148567.2| - 1.4e-05 24.9 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 YacP-like NYN domain 5_3_exonuc_N PF02739.11 gi|118431850|ref|NP_148567.2| - 4.2e-05 22.9 0.0 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain PIN PF01850.16 gi|118431850|ref|NP_148567.2| - 0.00021 21.6 0.2 0.00039 20.7 0.1 1.5 1 1 0 1 1 1 1 PIN domain Nitro_FeMo-Co PF02579.12 gi|118431850|ref|NP_148567.2| - 0.026 14.6 0.1 0.16 12.0 0.0 2.1 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor HH_signal PF01085.13 gi|118431850|ref|NP_148567.2| - 0.061 12.8 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 Hedgehog amino-terminal signalling domain NmrA PF05368.8 gi|118431850|ref|NP_148567.2| - 0.15 11.2 0.1 0.22 10.7 0.1 1.4 1 1 0 1 1 1 0 NmrA-like family GTP_EFTU PF00009.22 gi|118431851|ref|NP_148568.2| - 7.9e-42 142.8 0.0 1.2e-41 142.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|118431851|ref|NP_148568.2| - 7.3e-33 112.4 0.6 1.5e-32 111.4 0.4 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|118431851|ref|NP_148568.2| - 1.9e-07 31.0 3.9 4.9e-07 29.7 1.8 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|118431851|ref|NP_148568.2| - 0.00079 19.3 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|118431851|ref|NP_148568.2| - 0.0033 16.9 0.3 0.46 9.9 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|118431851|ref|NP_148568.2| - 0.037 13.3 0.9 3.1 7.0 0.0 2.6 2 0 0 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|118431851|ref|NP_148568.2| - 0.066 13.7 0.0 0.3 11.5 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|118431851|ref|NP_148568.2| - 0.071 12.9 0.0 0.13 12.0 0.0 1.7 1 1 0 1 1 1 0 Dynamin family Ribosomal_S6e PF01092.14 gi|118431852|ref|NP_148569.2| - 7.7e-23 80.5 0.3 2.1e-22 79.1 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|14602026|ref|NP_148571.1| - 1.5e-31 109.2 0.0 1e-30 106.5 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|14602026|ref|NP_148571.1| - 1.8e-24 85.1 0.1 1.8e-24 85.1 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.3 gi|14602026|ref|NP_148571.1| - 1.5e-23 82.7 0.0 3.1e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|14602026|ref|NP_148571.1| - 2.4e-14 53.2 4.3 4.4e-13 49.1 0.3 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|14602026|ref|NP_148571.1| - 2.3e-05 24.3 0.0 5.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|14602026|ref|NP_148571.1| - 0.011 15.8 0.0 0.1 12.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|14602026|ref|NP_148571.1| - 0.013 16.0 0.0 0.035 14.6 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein MobB PF03205.9 gi|14602026|ref|NP_148571.1| - 0.015 15.0 0.2 0.061 13.0 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|14602026|ref|NP_148571.1| - 0.036 13.6 0.0 0.2 11.1 0.0 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|14602026|ref|NP_148571.1| - 0.045 13.2 0.0 1.5 8.3 0.0 3.0 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|14602026|ref|NP_148571.1| - 0.083 12.7 0.1 1 9.1 0.0 2.4 2 0 0 2 2 2 0 Dynamin family STAS PF01740.16 gi|14602026|ref|NP_148571.1| - 0.086 12.2 0.0 0.36 10.2 0.0 2.1 1 0 0 1 1 1 0 STAS domain Ras PF00071.17 gi|14602026|ref|NP_148571.1| - 0.13 11.6 0.0 1.1 8.6 0.0 2.4 2 1 0 2 2 2 0 Ras family NDK PF00334.14 gi|14602027|ref|NP_148572.1| - 2.7e-57 192.3 0.0 3e-57 192.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase LysE PF01810.13 gi|14602028|ref|NP_148573.1| - 7.1e-21 74.3 12.7 8.2e-21 74.1 8.8 1.0 1 0 0 1 1 1 1 LysE type translocator Ribosomal_L24e PF01246.15 gi|14602029|ref|NP_148574.1| - 4.7e-20 71.2 0.7 5.4e-20 71.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|14602029|ref|NP_148574.1| - 3.1e-05 23.5 2.0 4.3e-05 23.0 1.4 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|14602029|ref|NP_148574.1| - 0.00046 19.9 1.4 0.039 13.7 0.2 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.8 gi|14602029|ref|NP_148574.1| - 0.0079 16.0 0.2 0.01 15.6 0.1 1.2 1 0 0 1 1 1 1 YHS domain Ta0938 PF11494.3 gi|14602029|ref|NP_148574.1| - 0.0097 16.0 0.0 0.0097 16.0 0.0 1.1 1 0 0 1 1 1 1 Ta0938 Arc_trans_TRASH PF08394.5 gi|14602029|ref|NP_148574.1| - 0.056 13.6 0.3 0.094 12.8 0.2 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain RPAP2_Rtr1 PF04181.8 gi|14602029|ref|NP_148574.1| - 0.13 12.3 0.6 0.14 12.2 0.4 1.3 1 1 0 1 1 1 0 Rtr1/RPAP2 family zf-C4_ClpX PF06689.8 gi|14602029|ref|NP_148574.1| - 0.25 10.8 0.2 0.25 10.8 0.1 1.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger zf-HIT PF04438.11 gi|14602029|ref|NP_148574.1| - 3.6 7.3 7.0 52 3.6 4.8 2.1 1 1 0 1 1 1 0 HIT zinc finger Ribosomal_S28e PF01200.13 gi|118431853|ref|NP_148575.2| - 3.4e-31 106.7 4.3 4e-31 106.5 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|118431853|ref|NP_148575.2| - 0.022 14.5 0.9 0.78 9.5 0.1 3.0 2 1 0 2 2 2 0 KOW motif SCFA_trans PF02667.9 gi|118431854|ref|NP_148576.2| - 5.7e-26 91.3 0.4 6.6e-26 91.0 0.3 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter SCFA_trans PF02667.9 gi|118431855|ref|YP_874942.1| - 1.8e-114 383.0 9.5 2e-114 382.9 6.6 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter BRI3BP PF14965.1 gi|118431855|ref|YP_874942.1| - 0.011 15.0 1.8 0.013 14.8 0.2 1.9 2 0 0 2 2 2 0 Negative regulator of p53/TP53 Thiolase_C PF02803.13 gi|14602032|ref|NP_148578.1| - 0.0024 17.2 0.0 3.3 7.1 0.0 2.8 3 0 0 3 3 3 2 Thiolase, C-terminal domain DUF35 PF01796.12 gi|14602033|ref|NP_148579.1| - 6.1e-10 39.1 0.5 1e-09 38.4 0.3 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|14602033|ref|NP_148579.1| - 1.9e-09 37.1 3.2 4.6e-09 35.9 2.2 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|14602033|ref|NP_148579.1| - 0.0051 15.9 3.0 0.011 14.8 2.1 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|14602033|ref|NP_148579.1| - 0.017 14.8 0.2 0.033 13.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|14602033|ref|NP_148579.1| - 0.12 11.8 3.3 0.26 10.8 2.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain NMD3 PF04981.8 gi|14602033|ref|NP_148579.1| - 0.15 11.1 0.1 0.2 10.7 0.1 1.2 1 0 0 1 1 1 0 NMD3 family DUF3809 PF12723.2 gi|14602033|ref|NP_148579.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3809) DUF35 PF01796.12 gi|118431857|ref|NP_148580.2| - 2e-10 40.7 0.5 3.5e-10 39.9 0.4 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|118431857|ref|NP_148580.2| - 7.5e-05 22.5 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Helicase_RecD PF05127.9 gi|118431858|ref|NP_148582.2| - 1.1e-55 188.0 0.0 3.4e-55 186.4 0.0 1.9 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|118431858|ref|NP_148582.2| - 1.9e-49 167.6 0.0 3.5e-48 163.5 0.0 2.6 2 1 0 2 2 2 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|118431858|ref|NP_148582.2| - 1.2e-28 98.6 0.0 2.7e-28 97.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|118431858|ref|NP_148582.2| - 1.5e-09 37.8 0.0 5.4e-08 32.8 0.0 2.4 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|118431858|ref|NP_148582.2| - 1.4e-08 34.8 0.0 4.3e-08 33.1 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|118431858|ref|NP_148582.2| - 1.8e-07 31.0 0.2 8.7e-07 28.8 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|118431858|ref|NP_148582.2| - 0.0003 20.6 0.0 0.006 16.4 0.0 2.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Sigma70_r4_2 PF08281.7 gi|118431858|ref|NP_148582.2| - 0.0014 18.0 0.2 0.0043 16.4 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Acetyltransf_10 PF13673.1 gi|118431858|ref|NP_148582.2| - 0.028 14.5 0.0 0.091 12.8 0.0 2.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Sua5_yciO_yrdC PF01300.13 gi|14602037|ref|NP_148583.1| - 1.4e-60 203.5 0.0 2.8e-60 202.6 0.0 1.5 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.8 gi|14602037|ref|NP_148583.1| - 6.5e-27 94.0 0.0 1.1e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Phos_pyr_kin PF08543.7 gi|118431859|ref|NP_148584.2| - 2.7e-96 321.5 3.1 3.4e-96 321.1 2.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|118431859|ref|NP_148584.2| - 2.5e-60 202.7 0.0 7e-60 201.2 0.0 1.8 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|118431859|ref|NP_148584.2| - 4.2e-13 49.0 1.8 6.1e-13 48.5 1.2 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CbiQ PF02361.11 gi|118431860|ref|NP_148585.2| - 1.6 8.2 10.5 3.5 7.1 7.3 1.4 1 1 0 1 1 1 0 Cobalt transport protein ABC_tran PF00005.22 gi|118431861|ref|NP_148587.2| - 2.2e-14 53.9 0.0 5.8e-13 49.3 0.0 2.6 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|118431861|ref|NP_148587.2| - 2.9e-08 34.0 0.2 7.2e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|118431861|ref|NP_148587.2| - 7.2e-06 26.4 0.0 1.1e-05 25.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|118431861|ref|NP_148587.2| - 1.9e-05 25.4 0.1 0.096 13.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|118431861|ref|NP_148587.2| - 8.8e-05 21.9 0.4 0.00022 20.6 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|118431861|ref|NP_148587.2| - 0.00012 21.7 3.1 0.00031 20.4 0.6 2.4 2 1 0 2 2 2 1 Part of AAA domain SMC_N PF02463.14 gi|118431861|ref|NP_148587.2| - 0.00097 18.4 0.0 0.0093 15.2 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|118431861|ref|NP_148587.2| - 0.0012 17.5 0.1 0.0018 16.9 0.1 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|118431861|ref|NP_148587.2| - 0.0018 18.4 0.1 0.0069 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|118431861|ref|NP_148587.2| - 0.0029 17.5 0.5 0.0072 16.3 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.3 gi|118431861|ref|NP_148587.2| - 0.0062 13.9 0.2 0.0077 13.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_30 PF13604.1 gi|118431861|ref|NP_148587.2| - 0.0084 15.7 0.1 0.011 15.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|118431861|ref|NP_148587.2| - 0.022 14.4 0.4 1.1 8.9 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|118431861|ref|NP_148587.2| - 0.024 13.0 0.0 0.082 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|118431861|ref|NP_148587.2| - 0.025 14.2 0.5 0.051 13.2 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|118431861|ref|NP_148587.2| - 0.029 13.7 0.9 0.06 12.7 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|118431861|ref|NP_148587.2| - 0.03 14.2 0.1 0.7 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|118431861|ref|NP_148587.2| - 0.031 14.5 0.1 0.17 12.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|118431861|ref|NP_148587.2| - 0.052 14.0 0.0 0.086 13.3 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein SRP54 PF00448.17 gi|118431861|ref|NP_148587.2| - 0.06 12.7 0.4 0.16 11.3 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|118431861|ref|NP_148587.2| - 0.064 13.2 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|118431861|ref|NP_148587.2| - 0.069 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_15 PF13175.1 gi|118431861|ref|NP_148587.2| - 0.07 12.1 0.0 0.093 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|118431861|ref|NP_148587.2| - 0.085 12.5 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 NTPase MobB PF03205.9 gi|118431861|ref|NP_148587.2| - 0.086 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|118431861|ref|NP_148587.2| - 0.092 12.6 1.2 0.2 11.5 0.2 2.1 2 1 0 2 2 1 0 AAA domain Thymidylate_kin PF02223.12 gi|118431861|ref|NP_148587.2| - 0.1 11.9 0.2 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase cobW PF02492.14 gi|118431861|ref|NP_148587.2| - 0.12 11.8 0.2 0.21 11.0 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|118431861|ref|NP_148587.2| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Viral_helicase1 PF01443.13 gi|118431861|ref|NP_148587.2| - 0.15 11.5 0.0 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.22 gi|118431862|ref|NP_148588.2| - 1.2e-17 64.4 0.0 1.8e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431862|ref|NP_148588.2| - 1.5e-07 31.7 0.1 0.0021 18.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|118431862|ref|NP_148588.2| - 0.001 19.4 0.0 0.0015 18.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|118431862|ref|NP_148588.2| - 0.0016 17.9 0.1 0.0031 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|118431862|ref|NP_148588.2| - 0.021 14.2 0.1 0.047 13.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|118431862|ref|NP_148588.2| - 0.029 14.1 2.9 0.036 13.8 0.6 2.1 2 0 0 2 2 2 0 Part of AAA domain T2SE PF00437.15 gi|118431862|ref|NP_148588.2| - 0.056 12.3 0.3 0.091 11.6 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|118431862|ref|NP_148588.2| - 0.069 13.0 0.0 0.58 10.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_PrkA PF08298.6 gi|118431862|ref|NP_148588.2| - 0.2 10.2 0.0 0.37 9.4 0.0 1.3 1 1 0 1 1 1 0 PrkA AAA domain Rad17 PF03215.10 gi|118431862|ref|NP_148588.2| - 0.22 10.1 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|118431862|ref|NP_148588.2| - 0.25 9.8 2.0 1.9 6.9 0.4 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|14602043|ref|NP_148589.1| - 0.0057 16.6 0.2 0.009 16.0 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|14602043|ref|NP_148589.1| - 0.0077 15.6 0.0 0.0082 15.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.9 gi|14602043|ref|NP_148589.1| - 0.01 15.5 0.1 0.032 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|14602043|ref|NP_148589.1| - 0.011 15.1 0.0 0.015 14.7 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|14602043|ref|NP_148589.1| - 0.088 12.4 0.2 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 NACHT domain ThiW PF09512.5 gi|118431863|ref|NP_148591.2| - 1.3e-44 151.6 16.1 1.5e-44 151.4 11.1 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) DUF3816 PF12822.2 gi|118431863|ref|NP_148591.2| - 0.00038 20.4 13.4 0.00054 19.9 9.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|118431863|ref|NP_148591.2| - 0.0011 18.2 12.7 0.0018 17.6 8.8 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT YbhQ PF11076.3 gi|118431863|ref|NP_148591.2| - 0.56 9.8 6.0 1.9 8.0 0.3 2.4 2 0 0 2 2 2 0 Putative inner membrane protein YbhQ HTH_5 PF01022.15 gi|14602047|ref|NP_148593.1| - 3e-08 33.1 0.1 5.4e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|14602047|ref|NP_148593.1| - 1.5e-06 27.4 0.2 2.7e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|14602047|ref|NP_148593.1| - 2.3e-05 24.0 0.1 3.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|14602047|ref|NP_148593.1| - 0.00012 21.5 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain DUF1495 PF07381.6 gi|14602047|ref|NP_148593.1| - 0.00014 21.4 0.3 0.0055 16.3 0.2 2.2 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_20 PF12840.2 gi|14602047|ref|NP_148593.1| - 0.00024 20.8 0.0 0.00035 20.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|14602047|ref|NP_148593.1| - 0.00058 19.9 0.1 0.00083 19.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|14602047|ref|NP_148593.1| - 0.0014 18.5 0.2 0.0021 17.9 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|14602047|ref|NP_148593.1| - 0.0048 16.4 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|14602047|ref|NP_148593.1| - 0.0058 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|14602047|ref|NP_148593.1| - 0.0069 16.4 0.1 0.011 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|14602047|ref|NP_148593.1| - 0.019 15.3 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|14602047|ref|NP_148593.1| - 0.019 14.5 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|14602047|ref|NP_148593.1| - 0.02 14.7 0.1 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_11 PF08279.7 gi|14602047|ref|NP_148593.1| - 0.026 14.1 0.1 0.059 13.0 0.1 1.7 1 1 0 1 1 1 0 HTH domain HTH_1 PF00126.22 gi|14602047|ref|NP_148593.1| - 0.051 13.3 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|14602047|ref|NP_148593.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|14602047|ref|NP_148593.1| - 0.12 12.5 0.0 0.19 11.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix NUMOD1 PF07453.8 gi|14602047|ref|NP_148593.1| - 0.12 12.2 1.1 0.38 10.6 0.2 2.1 2 0 0 2 2 2 0 NUMOD1 domain FaeA PF04703.7 gi|14602047|ref|NP_148593.1| - 0.13 12.4 0.1 0.26 11.4 0.0 1.6 2 0 0 2 2 2 0 FaeA-like protein HTH_Crp_2 PF13545.1 gi|14602047|ref|NP_148593.1| - 0.14 11.9 0.1 0.26 11.0 0.1 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MatE PF01554.13 gi|118431864|ref|NP_148594.2| - 3e-47 160.2 44.3 5.2e-27 94.4 13.7 2.7 3 0 0 3 3 3 2 MatE MVIN PF03023.9 gi|118431864|ref|NP_148594.2| - 9.9e-07 27.5 14.1 9.9e-07 27.5 9.8 2.2 1 1 1 2 2 2 1 MviN-like protein Polysacc_synt_C PF14667.1 gi|118431864|ref|NP_148594.2| - 9.2e-05 22.2 20.0 9.2e-05 22.2 13.8 4.3 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain DUF4406 PF14359.1 gi|118431865|ref|NP_148595.2| - 0.076 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) ETF PF01012.16 gi|118431866|ref|NP_148596.2| - 5.8e-35 120.4 0.0 7.8e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|14602051|ref|NP_148597.1| - 4.5e-37 127.2 0.0 7.5e-37 126.5 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|14602051|ref|NP_148597.1| - 5.9e-35 118.7 0.8 1.3e-34 117.6 0.4 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain FRQ PF09421.5 gi|14602051|ref|NP_148597.1| - 0.17 9.6 0.0 0.22 9.2 0.0 1.1 1 0 0 1 1 1 0 Frequency clock protein DAO PF01266.19 gi|14602052|ref|NP_148598.1| - 3.8e-20 72.0 6.9 5.5e-11 41.9 1.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|14602052|ref|NP_148598.1| - 8.9e-11 41.2 1.8 2.7e-07 29.8 0.5 2.4 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|14602052|ref|NP_148598.1| - 2.1e-10 40.1 4.2 1.4e-08 34.1 0.5 2.3 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.2 gi|14602052|ref|NP_148598.1| - 8.9e-09 34.9 2.6 1.8e-08 33.9 1.8 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|14602052|ref|NP_148598.1| - 3.2e-08 32.4 1.5 1.6e-07 30.1 0.7 2.0 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|14602052|ref|NP_148598.1| - 6.7e-08 32.4 1.4 1.5e-07 31.2 1.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|14602052|ref|NP_148598.1| - 3.6e-07 29.5 3.6 8.9e-07 28.2 0.5 2.5 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|14602052|ref|NP_148598.1| - 5.7e-07 29.6 0.0 9.4e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|14602052|ref|NP_148598.1| - 2.4e-06 26.4 2.6 0.031 12.9 0.0 2.9 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|14602052|ref|NP_148598.1| - 4.6e-06 26.8 1.0 2.1e-05 24.6 0.7 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|14602052|ref|NP_148598.1| - 0.00034 20.9 1.7 0.0033 17.7 0.8 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|14602052|ref|NP_148598.1| - 0.0004 19.4 1.8 0.0004 19.4 1.2 2.1 2 1 0 2 2 2 1 Lycopene cyclase protein GDI PF00996.13 gi|14602052|ref|NP_148598.1| - 0.00044 18.6 0.1 0.29 9.4 0.1 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor GIDA PF01134.17 gi|14602052|ref|NP_148598.1| - 0.00058 18.8 1.4 0.00058 18.8 1.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|14602052|ref|NP_148598.1| - 0.0018 17.4 1.1 0.0022 17.1 0.1 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|14602052|ref|NP_148598.1| - 0.058 13.0 1.1 0.17 11.4 0.2 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|14602052|ref|NP_148598.1| - 0.13 12.0 1.1 0.47 10.2 0.7 2.0 1 1 0 1 1 1 0 FAD-NAD(P)-binding Aminotran_5 PF00266.14 gi|14602053|ref|NP_148599.1| - 1.1e-33 116.5 0.0 1.3e-33 116.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Translin PF01997.11 gi|14602054|ref|NP_148600.1| - 8.8e-34 116.8 0.0 1e-33 116.6 0.0 1.1 1 0 0 1 1 1 1 Translin family PPR_3 PF13812.1 gi|14602054|ref|NP_148600.1| - 0.079 13.2 0.4 0.46 10.8 0.0 2.5 3 0 0 3 3 3 0 Pentatricopeptide repeat domain GHMP_kinases_C PF08544.8 gi|14602055|ref|NP_148601.1| - 4.4e-06 26.7 0.1 9e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|14602055|ref|NP_148601.1| - 7.8e-06 25.8 0.2 1.6e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Na_H_Exchanger PF00999.16 gi|118431867|ref|NP_148602.2| - 3.5e-52 177.1 59.0 4.3e-52 176.9 40.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Thioredoxin PF00085.15 gi|118431868|ref|NP_148604.2| - 4.3e-18 64.9 0.0 5.7e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|118431868|ref|NP_148604.2| - 7.3e-07 29.3 0.0 1.1e-05 25.6 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DIM1 PF02966.11 gi|118431868|ref|NP_148604.2| - 0.00016 21.1 0.0 0.0003 20.3 0.0 1.4 1 1 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_7 PF13899.1 gi|118431868|ref|NP_148604.2| - 0.00081 19.3 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like HyaE PF07449.6 gi|118431868|ref|NP_148604.2| - 0.002 18.0 0.1 0.0061 16.4 0.1 1.8 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.1 gi|118431868|ref|NP_148604.2| - 0.0085 15.6 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|118431868|ref|NP_148604.2| - 0.027 14.2 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|118431868|ref|NP_148604.2| - 0.027 14.5 0.0 6 7.0 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like DUF836 PF05768.9 gi|118431868|ref|NP_148604.2| - 0.072 13.3 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DFF-C PF09033.5 gi|118431868|ref|NP_148604.2| - 0.096 12.5 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 DNA Fragmentation factor 45kDa, C terminal domain ERCC4 PF02732.10 gi|118431868|ref|NP_148604.2| - 0.11 12.1 0.1 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 ERCC4 domain Lambda_CIII PF02061.11 gi|118431868|ref|NP_148604.2| - 0.91 9.5 0.1 0.91 9.5 0.0 2.4 3 0 0 3 3 3 0 Lambda Phage CIII THUMP PF02926.12 gi|118431869|ref|YP_874943.1| - 4.2e-19 68.8 0.4 5.7e-19 68.4 0.3 1.1 1 0 0 1 1 1 1 THUMP domain PGM_PMM_I PF02878.11 gi|118431870|ref|NP_148606.2| - 1.8e-37 127.9 0.0 4.2e-37 126.6 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|118431870|ref|NP_148606.2| - 8.9e-17 61.3 0.0 2e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|118431870|ref|NP_148606.2| - 8e-10 38.5 0.1 2.5e-09 37.0 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|118431870|ref|NP_148606.2| - 1.9e-05 24.6 0.0 9e-05 22.4 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF2208 PF09973.4 gi|14602061|ref|NP_148607.1| - 2.1e-75 252.9 3.4 2.4e-75 252.7 2.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Tiny_TM_bacill PF09680.5 gi|14602061|ref|NP_148607.1| - 0.015 14.6 1.3 0.015 14.6 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (Tiny_TM_bacill) DUF1673 PF07895.6 gi|14602061|ref|NP_148607.1| - 0.021 14.3 5.4 0.048 13.1 3.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) Amidohydro_1 PF01979.15 gi|14602062|ref|NP_148608.1| - 1.3e-08 34.8 0.0 3.1e-08 33.6 0.0 1.6 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|14602062|ref|NP_148608.1| - 6.9e-08 32.8 0.3 1.4e-07 31.8 0.2 1.4 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|14602062|ref|NP_148608.1| - 0.004 16.1 0.0 0.0058 15.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase SCP2 PF02036.12 gi|118431871|ref|YP_874944.1| - 3.2e-18 65.9 0.1 3.7e-18 65.6 0.0 1.0 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|118431871|ref|YP_874944.1| - 6.8e-06 26.0 0.0 1.1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal Pox_VERT_large PF04441.8 gi|118431871|ref|YP_874944.1| - 0.0096 14.1 0.0 0.011 13.9 0.0 1.0 1 0 0 1 1 1 1 Poxvirus early transcription factor (VETF), large subunit DeoC PF01791.4 gi|118431872|ref|NP_148609.2| - 7.1e-32 110.5 0.1 8.1e-32 110.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase FMN_dh PF01070.13 gi|118431872|ref|NP_148609.2| - 0.039 12.8 4.5 0.33 9.7 1.6 2.5 3 0 0 3 3 3 0 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|118431872|ref|NP_148609.2| - 0.11 11.3 1.3 0.16 10.8 0.9 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DUF4346 PF14251.1 gi|14602064|ref|NP_148610.1| - 1.5e-07 31.1 0.0 6.5e-05 22.6 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4346) DUF4231 PF14015.1 gi|14602064|ref|NP_148610.1| - 0.073 13.0 0.5 0.16 11.9 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) GHMP_kinases_N PF00288.21 gi|14602065|ref|NP_148611.1| - 3.6e-18 65.3 0.9 7.8e-18 64.3 0.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|14602065|ref|NP_148611.1| - 6.3e-17 61.5 1.4 2.1e-16 59.9 0.7 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal Peptidase_S9 PF00326.16 gi|118431873|ref|NP_148612.2| - 1.3e-46 158.4 0.0 1.8e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|118431873|ref|NP_148612.2| - 3.4e-15 56.0 0.0 6.1e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|118431873|ref|NP_148612.2| - 1.2e-11 44.9 0.6 2.2e-10 40.8 0.4 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|118431873|ref|NP_148612.2| - 2.4e-07 30.5 0.0 0.0046 16.5 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.13 gi|118431873|ref|NP_148612.2| - 3.4e-07 29.7 0.0 4.2e-06 26.2 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.7 gi|118431873|ref|NP_148612.2| - 3.4e-06 25.7 0.1 0.00026 19.5 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) PD40 PF07676.7 gi|118431873|ref|NP_148612.2| - 1.9e-05 24.2 2.6 0.0014 18.1 0.1 3.7 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Abhydrolase_2 PF02230.11 gi|118431873|ref|NP_148612.2| - 6e-05 22.5 0.0 0.0054 16.2 0.0 2.5 3 0 0 3 3 2 1 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.8 gi|118431873|ref|NP_148612.2| - 6.4e-05 22.6 1.0 0.0024 17.4 0.7 2.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|118431873|ref|NP_148612.2| - 0.00072 19.3 0.0 0.0031 17.3 0.0 2.0 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|118431873|ref|NP_148612.2| - 0.0055 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein DUF2920 PF11144.3 gi|118431873|ref|NP_148612.2| - 0.0079 15.2 0.0 0.56 9.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) Peptidase_S15 PF02129.13 gi|118431873|ref|NP_148612.2| - 0.0098 15.3 0.0 2.4 7.5 0.0 2.3 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DPPIV_N PF00930.16 gi|118431873|ref|NP_148612.2| - 0.011 14.3 0.0 0.17 10.4 0.0 2.1 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region LIP PF03583.9 gi|118431873|ref|NP_148612.2| - 0.011 14.9 0.2 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 Secretory lipase Esterase_phd PF10503.4 gi|118431873|ref|NP_148612.2| - 0.013 14.7 0.1 0.15 11.2 0.1 2.1 1 1 0 1 1 1 0 Esterase PHB depolymerase Peptidase_S28 PF05577.7 gi|118431873|ref|NP_148612.2| - 0.3 9.6 0.0 0.43 9.1 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 TFIIB PF00382.14 gi|118431874|ref|NP_148613.2| - 4.5e-36 122.4 0.6 1.1e-16 60.3 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Sigma70_r4 PF04545.11 gi|118431874|ref|NP_148613.2| - 0.00092 18.4 2.6 0.0072 15.6 0.2 3.0 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|118431874|ref|NP_148613.2| - 0.0017 17.8 0.0 0.0097 15.4 0.0 2.2 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|118431874|ref|NP_148613.2| - 0.0048 16.3 2.6 0.11 11.9 0.3 3.3 2 1 1 3 3 3 2 Sigma-70, region 4 HTH_23 PF13384.1 gi|118431874|ref|NP_148613.2| - 0.006 16.2 0.5 0.095 12.3 0.4 2.7 1 1 0 1 1 1 1 Homeodomain-like domain DUF2089 PF09862.4 gi|118431874|ref|NP_148613.2| - 0.017 14.9 0.5 0.044 13.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) Cyclin_N PF00134.18 gi|118431874|ref|NP_148613.2| - 0.044 13.3 0.0 0.37 10.3 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain TF_Zn_Ribbon PF08271.7 gi|118431874|ref|NP_148613.2| - 0.05 12.9 0.2 0.096 12.0 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding LexA_DNA_bind PF01726.11 gi|14602068|ref|NP_148614.1| - 0.015 14.8 0.0 0.049 13.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.1 gi|14602068|ref|NP_148614.1| - 0.03 14.3 0.2 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|14602068|ref|NP_148614.1| - 0.15 11.9 0.0 7.1 6.6 0.0 2.4 2 0 0 2 2 2 0 Transposase DUF711 PF05167.7 gi|14602070|ref|NP_148616.1| - 2.2e-78 263.7 0.0 2.7e-78 263.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) CopD PF05425.8 gi|14602071|ref|NP_148617.1| - 5.2e-09 36.2 8.3 5.2e-09 36.2 5.8 1.7 1 1 1 2 2 2 1 Copper resistance protein D DUF2269 PF10027.4 gi|14602071|ref|NP_148617.1| - 0.02 14.6 9.9 0.052 13.3 6.9 1.7 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF4199 PF13858.1 gi|14602071|ref|NP_148617.1| - 0.093 12.6 5.4 0.024 14.5 1.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DoxX PF07681.7 gi|14602071|ref|NP_148617.1| - 0.7 10.3 0.1 0.7 10.3 0.1 2.9 2 1 0 2 2 2 0 DoxX DUF2306 PF10067.4 gi|14602071|ref|NP_148617.1| - 1.4 9.0 6.9 0.46 10.6 2.4 1.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2306) BtpA PF03437.10 gi|14602072|ref|NP_148618.1| - 6.3e-111 369.6 0.0 7.1e-111 369.4 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|14602072|ref|NP_148618.1| - 0.03 12.8 0.1 0.05 12.1 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Peptidase_M17 PF00883.16 gi|118431875|ref|NP_148619.2| - 9.3e-96 320.3 0.0 1.1e-95 320.0 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.12 gi|118431875|ref|NP_148619.2| - 1.6e-12 47.2 1.0 3.1e-11 43.1 0.0 3.0 3 0 0 3 3 3 1 Cytosol aminopeptidase family, N-terminal domain GMP_synt_C PF00958.17 gi|14602074|ref|NP_148620.1| - 3.4e-35 119.6 0.0 6.2e-35 118.7 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.23 gi|14602074|ref|NP_148620.1| - 2e-32 112.2 0.0 3.2e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.12 gi|14602074|ref|NP_148620.1| - 1.4e-10 40.5 0.1 4.3e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.8 gi|14602074|ref|NP_148620.1| - 4e-10 39.5 0.1 1.2e-08 34.6 0.1 2.7 1 1 0 1 1 1 1 Peptidase C26 QueC PF06508.8 gi|14602074|ref|NP_148620.1| - 2.4e-05 23.6 0.0 0.0072 15.6 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|14602074|ref|NP_148620.1| - 0.0027 17.2 0.1 0.006 16.1 0.1 1.5 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|14602074|ref|NP_148620.1| - 0.0048 16.3 0.0 0.0076 15.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|14602074|ref|NP_148620.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.4 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.14 gi|14602074|ref|NP_148620.1| - 0.039 13.7 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|14602074|ref|NP_148620.1| - 0.044 12.3 0.1 0.15 10.6 0.0 1.7 2 0 0 2 2 2 0 tRNA methyl transferase Imm38 PF15599.1 gi|14602074|ref|NP_148620.1| - 0.16 11.4 0.0 0.47 9.9 0.0 1.8 1 0 0 1 1 1 0 Immunity protein 38 UPF0547 PF10571.4 gi|118431876|ref|YP_874945.1| - 0.0011 18.5 1.6 0.056 13.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|118431876|ref|YP_874945.1| - 0.0049 16.8 0.4 0.0092 15.9 0.3 1.5 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|118431876|ref|YP_874945.1| - 0.0067 15.8 2.2 1.1 8.8 0.0 2.2 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|118431876|ref|YP_874945.1| - 0.0099 15.3 0.2 2.1 7.8 0.0 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain DUF4379 PF14311.1 gi|118431876|ref|YP_874945.1| - 0.01 15.6 3.1 0.016 14.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Elf1 PF05129.8 gi|118431876|ref|YP_874945.1| - 0.016 14.8 0.1 0.035 13.8 0.1 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|118431876|ref|YP_874945.1| - 0.021 14.7 0.5 0.4 10.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|118431876|ref|YP_874945.1| - 0.029 14.2 1.2 0.3 10.9 0.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|118431876|ref|YP_874945.1| - 0.03 13.5 1.9 0.29 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|118431876|ref|YP_874945.1| - 0.034 14.4 0.4 0.068 13.4 0.3 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L44 PF00935.14 gi|118431876|ref|YP_874945.1| - 0.043 13.8 0.8 0.56 10.2 0.0 2.1 1 1 1 2 2 2 0 Ribosomal protein L44 Rubredoxin PF00301.15 gi|118431876|ref|YP_874945.1| - 0.071 12.9 1.4 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin HypA PF01155.14 gi|118431876|ref|YP_874945.1| - 0.09 12.4 0.2 9.3 5.9 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|118431876|ref|YP_874945.1| - 0.099 12.4 0.6 11 5.8 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TFIIS_C PF01096.13 gi|118431876|ref|YP_874945.1| - 0.1 12.2 1.4 4.2 7.0 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|118431876|ref|YP_874945.1| - 0.1 12.9 0.5 0.98 9.8 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.1 gi|118431876|ref|YP_874945.1| - 0.11 12.0 0.6 3.9 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|118431876|ref|YP_874945.1| - 0.11 12.2 0.2 4.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 FYDLN_acid PF09538.5 gi|118431876|ref|YP_874945.1| - 0.12 12.9 0.2 3.5 8.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) DUF1610 PF07754.6 gi|118431876|ref|YP_874945.1| - 0.13 12.4 0.3 0.13 12.4 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|118431876|ref|YP_874945.1| - 0.14 11.7 0.2 10 5.8 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF2225 PF09986.4 gi|118431876|ref|YP_874945.1| - 0.2 11.1 0.6 0.52 9.7 0.4 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-nanos PF05741.8 gi|118431876|ref|YP_874945.1| - 0.4 10.6 1.7 20 5.2 0.2 2.2 1 1 1 2 2 2 0 Nanos RNA binding domain Zn_Tnp_IS1595 PF12760.2 gi|118431876|ref|YP_874945.1| - 1.6 8.5 5.7 0.82 9.5 1.6 2.1 2 1 0 2 2 1 0 Transposase zinc-ribbon domain MS_channel PF00924.13 gi|118431877|ref|YP_874946.1| - 5.2e-08 32.4 0.7 8e-08 31.8 0.5 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TrkA_N PF02254.13 gi|14602214|ref|NP_148621.1| - 3.3e-24 85.1 0.9 4.4e-24 84.7 0.2 1.5 2 0 0 2 2 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|14602214|ref|NP_148621.1| - 2.1e-09 37.5 0.1 5.2e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|14602214|ref|NP_148621.1| - 4.3e-07 29.4 1.5 1.1e-06 28.0 0.2 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|14602214|ref|NP_148621.1| - 1.1e-06 28.7 0.1 1.8e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|14602214|ref|NP_148621.1| - 2.2e-06 28.0 0.0 3.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain ThiF PF00899.16 gi|14602214|ref|NP_148621.1| - 7.2e-06 25.8 0.9 0.0016 18.2 0.1 2.4 1 1 1 2 2 2 1 ThiF family 3HCDH_N PF02737.13 gi|14602214|ref|NP_148621.1| - 7.6e-06 25.6 0.0 1.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|14602214|ref|NP_148621.1| - 1.9e-05 24.1 0.0 3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|14602214|ref|NP_148621.1| - 2.1e-05 23.6 0.1 2.6e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|14602214|ref|NP_148621.1| - 2.4e-05 24.6 0.3 8.3e-05 22.9 0.1 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|14602214|ref|NP_148621.1| - 6.3e-05 23.3 0.6 0.00018 21.8 0.1 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|14602214|ref|NP_148621.1| - 7.3e-05 22.0 0.0 0.00015 21.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|14602214|ref|NP_148621.1| - 7.8e-05 21.8 0.3 0.00016 20.8 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.15 gi|14602214|ref|NP_148621.1| - 9.9e-05 22.4 0.1 0.0002 21.4 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|14602214|ref|NP_148621.1| - 0.00016 21.1 0.0 0.00027 20.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|14602214|ref|NP_148621.1| - 0.00055 19.8 0.0 0.00081 19.3 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|14602214|ref|NP_148621.1| - 0.00075 19.3 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.19 gi|14602214|ref|NP_148621.1| - 0.00091 18.2 0.1 0.0018 17.2 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase DapB_N PF01113.15 gi|14602214|ref|NP_148621.1| - 0.0023 17.8 0.1 0.0056 16.5 0.0 1.7 2 0 0 2 2 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_8 PF13450.1 gi|14602214|ref|NP_148621.1| - 0.0057 16.6 0.1 0.013 15.5 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain adh_short PF00106.20 gi|14602214|ref|NP_148621.1| - 0.0084 16.0 0.1 0.023 14.6 0.0 1.7 2 0 0 2 2 1 1 short chain dehydrogenase Epimerase PF01370.16 gi|14602214|ref|NP_148621.1| - 0.0089 15.4 0.0 0.025 14.0 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|14602214|ref|NP_148621.1| - 0.011 14.4 0.1 0.02 13.6 0.1 1.4 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family OKR_DC_1_N PF03709.10 gi|14602214|ref|NP_148621.1| - 0.013 15.5 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain RmlD_sub_bind PF04321.12 gi|14602214|ref|NP_148621.1| - 0.016 14.1 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain GFO_IDH_MocA PF01408.17 gi|14602214|ref|NP_148621.1| - 0.019 15.5 0.0 0.037 14.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Methyltransf_25 PF13649.1 gi|14602214|ref|NP_148621.1| - 0.019 15.2 0.0 0.028 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Thi4 PF01946.12 gi|14602214|ref|NP_148621.1| - 0.02 13.9 1.2 2.1 7.3 0.1 2.1 2 0 0 2 2 2 0 Thi4 family Rossmann-like PF10727.4 gi|14602214|ref|NP_148621.1| - 0.022 14.4 0.2 0.07 12.8 0.2 2.1 1 1 0 1 1 1 0 Rossmann-like domain TehB PF03848.9 gi|14602214|ref|NP_148621.1| - 0.029 13.5 0.1 0.049 12.7 0.0 1.5 1 1 0 1 1 1 0 Tellurite resistance protein TehB Big_3 PF07523.7 gi|14602214|ref|NP_148621.1| - 0.03 14.4 0.4 1.1 9.3 0.0 2.9 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) CoA_binding_2 PF13380.1 gi|14602214|ref|NP_148621.1| - 0.037 14.1 0.1 0.081 13.1 0.1 1.6 1 1 0 1 1 1 0 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|14602214|ref|NP_148621.1| - 0.051 13.3 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Methyltransf_18 PF12847.2 gi|14602214|ref|NP_148621.1| - 0.053 14.0 0.0 0.095 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Glyco_transf_4 PF13439.1 gi|14602214|ref|NP_148621.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 FAD_binding_2 PF00890.19 gi|14602214|ref|NP_148621.1| - 0.13 11.0 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Enolase_C PF00113.17 gi|14602076|ref|NP_148623.1| - 8.9e-107 356.4 0.0 1.2e-106 356.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|14602076|ref|NP_148623.1| - 3e-47 159.8 0.0 5.1e-47 159.1 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|14602076|ref|NP_148623.1| - 0.001 19.0 0.1 0.003 17.4 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|14602076|ref|NP_148623.1| - 0.0028 18.1 0.0 0.0094 16.4 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MAAL_C PF07476.6 gi|14602076|ref|NP_148623.1| - 0.026 13.4 0.0 0.047 12.6 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Peripla_BP_4 PF13407.1 gi|14602076|ref|NP_148623.1| - 0.037 13.3 0.2 0.14 11.4 0.0 1.9 2 0 0 2 2 2 0 Periplasmic binding protein domain DUF3197 PF11432.3 gi|118431878|ref|YP_874947.1| - 0.027 14.4 0.0 0.048 13.6 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3197) TIR_2 PF13676.1 gi|118431878|ref|YP_874947.1| - 0.03 14.4 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 TIR domain PA PF02225.17 gi|118431878|ref|YP_874947.1| - 0.071 12.8 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 PA domain SBP_bac_3 PF00497.15 gi|118431878|ref|YP_874947.1| - 0.12 11.5 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Mrr_cat PF04471.7 gi|118431878|ref|YP_874947.1| - 0.14 12.0 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease TusA PF01206.12 gi|118431878|ref|YP_874947.1| - 0.14 11.7 0.0 0.89 9.2 0.0 2.0 1 1 1 2 2 2 0 Sulfurtransferase TusA tRNA-synt_1b PF00579.20 gi|118431880|ref|NP_148625.2| - 8.6e-41 139.9 0.0 1.5e-40 139.1 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) VKOR PF07884.9 gi|118431881|ref|NP_148627.2| - 2.4e-19 69.5 19.0 3e-19 69.2 13.2 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PhoH PF02562.11 gi|118431883|ref|NP_148629.2| - 1.4e-45 155.0 0.0 2.3e-45 154.3 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.12 gi|118431883|ref|NP_148629.2| - 5.9e-11 41.7 4.7 1.9e-07 30.5 0.7 2.6 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|118431883|ref|NP_148629.2| - 1.5e-09 37.4 0.2 1.5e-08 34.2 0.1 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|118431883|ref|NP_148629.2| - 5.5e-08 32.3 3.4 5.7e-06 25.8 0.6 2.6 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|118431883|ref|NP_148629.2| - 2.9e-05 23.5 0.7 0.00022 20.7 0.3 2.4 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.1 gi|118431883|ref|NP_148629.2| - 0.00053 19.6 0.0 0.0026 17.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|118431883|ref|NP_148629.2| - 0.019 15.1 0.2 0.1 12.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain Nol1_Nop2_Fmu PF01189.12 gi|118431884|ref|NP_148630.2| - 5.8e-46 157.1 0.0 7.1e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|118431884|ref|NP_148630.2| - 1.4e-09 37.9 0.2 1.6e-08 34.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|118431884|ref|NP_148630.2| - 1.9e-06 27.5 0.0 3.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|118431884|ref|NP_148630.2| - 8.9e-06 26.2 0.0 3.2e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|118431884|ref|NP_148630.2| - 4.1e-05 23.6 0.0 7.4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase UPF0020 PF01170.13 gi|118431884|ref|NP_148630.2| - 0.004 16.7 0.0 0.007 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|118431884|ref|NP_148630.2| - 0.018 14.6 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MFS_1 PF07690.11 gi|14602084|ref|NP_148631.1| - 2.1e-30 105.6 58.5 7.6e-23 80.7 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|14602084|ref|NP_148631.1| - 1.5e-05 24.6 2.5 0.016 14.9 0.1 3.7 4 0 0 4 4 4 2 MFS_1 like family LacY_symp PF01306.14 gi|14602084|ref|NP_148631.1| - 0.38 9.2 10.0 0.063 11.8 0.5 3.0 2 1 1 3 3 3 0 LacY proton/sugar symporter CoA_trans PF01144.18 gi|118431885|ref|NP_148633.2| - 2.2e-55 187.2 0.0 2.9e-52 177.0 0.0 2.9 3 1 0 3 3 3 2 Coenzyme A transferase Ribosomal_S25 PF03297.10 gi|14602087|ref|NP_148634.1| - 1e-06 28.7 0.1 1.3e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 S25 ribosomal protein GntR PF00392.16 gi|14602087|ref|NP_148634.1| - 0.00048 19.5 1.6 0.0011 18.3 1.1 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_42 PF06224.7 gi|14602087|ref|NP_148634.1| - 0.00081 18.8 0.3 0.00092 18.6 0.2 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|14602087|ref|NP_148634.1| - 0.0041 16.7 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|14602087|ref|NP_148634.1| - 0.0074 15.9 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 HTH domain EAP30 PF04157.11 gi|14602087|ref|NP_148634.1| - 0.011 14.9 0.1 0.012 14.7 0.1 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_28 PF13518.1 gi|14602087|ref|NP_148634.1| - 0.038 13.9 0.1 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|14602087|ref|NP_148634.1| - 0.057 13.5 0.4 0.32 11.1 0.2 1.7 1 1 1 2 2 2 0 Winged helix-turn helix F420_ligase PF01996.11 gi|14602087|ref|NP_148634.1| - 0.093 11.7 0.0 0.094 11.7 0.0 1.0 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Rrf2 PF02082.15 gi|14602087|ref|NP_148634.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator AAA_26 PF13500.1 gi|118431886|ref|NP_148635.2| - 0.0045 16.6 0.0 0.0082 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Metallophos_2 PF12850.2 gi|118431887|ref|NP_148636.2| - 0.00071 19.4 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|118431887|ref|NP_148636.2| - 0.0066 15.8 0.0 0.25 10.7 0.0 2.3 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase DUF3116 PF11313.3 gi|118431888|ref|YP_874948.1| - 0.0036 16.8 0.4 0.0044 16.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) Cdc6_C PF09079.6 gi|118431888|ref|YP_874948.1| - 0.025 14.2 0.3 0.063 13.0 0.1 1.7 1 1 1 2 2 2 0 CDC6, C terminal TrmB PF01978.14 gi|118431888|ref|YP_874948.1| - 0.032 13.9 0.6 2.1 8.1 0.1 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|118431889|ref|NP_148637.2| - 2.7e-100 331.7 0.0 5.8e-51 172.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|118431889|ref|NP_148637.2| - 1.4e-32 111.4 0.8 2e-31 107.7 1.4 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|118431889|ref|NP_148637.2| - 5.4e-16 58.3 0.1 2.2e-07 30.1 0.0 3.4 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|118431889|ref|NP_148637.2| - 2.9e-14 53.3 0.0 3.2e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|118431889|ref|NP_148637.2| - 6.8e-14 52.2 0.0 9.1e-07 29.0 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|118431889|ref|NP_148637.2| - 2.7e-13 50.1 0.3 2.4e-05 24.4 0.0 4.3 2 2 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|118431889|ref|NP_148637.2| - 3.4e-13 49.0 3.1 3.4e-13 49.0 2.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|118431889|ref|NP_148637.2| - 3.9e-13 50.2 0.0 7.7e-07 29.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|118431889|ref|NP_148637.2| - 7.5e-12 45.3 0.0 4.8e-05 23.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|118431889|ref|NP_148637.2| - 6.3e-11 42.1 2.0 0.00063 19.4 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|118431889|ref|NP_148637.2| - 3.4e-10 39.9 0.0 4.4e-05 23.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|118431889|ref|NP_148637.2| - 1.2e-09 37.5 0.0 0.0001 21.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin TIP49 PF06068.8 gi|118431889|ref|NP_148637.2| - 1.9e-09 36.7 2.8 0.00078 18.2 0.0 2.9 4 0 0 4 4 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|118431889|ref|NP_148637.2| - 4.5e-09 35.9 0.4 0.0028 17.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|118431889|ref|NP_148637.2| - 4.6e-09 36.3 0.0 0.004 16.9 0.0 4.1 2 2 2 4 4 4 2 Archaeal ATPase AAA_19 PF13245.1 gi|118431889|ref|NP_148637.2| - 8.6e-09 35.0 1.0 0.0055 16.4 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain AAA_18 PF13238.1 gi|118431889|ref|NP_148637.2| - 6.8e-08 32.8 0.0 0.0041 17.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|118431889|ref|NP_148637.2| - 9.4e-08 32.1 0.0 0.012 15.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|118431889|ref|NP_148637.2| - 4.6e-07 29.4 0.1 0.06 12.8 0.0 3.9 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|118431889|ref|NP_148637.2| - 6.5e-07 28.7 0.6 0.034 13.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|118431889|ref|NP_148637.2| - 6.6e-07 28.9 7.0 0.012 15.0 0.2 3.8 2 2 1 3 3 3 2 AAA domain KaiC PF06745.8 gi|118431889|ref|NP_148637.2| - 9.3e-07 28.1 0.5 0.15 11.1 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.1 gi|118431889|ref|NP_148637.2| - 1.3e-06 28.1 0.1 0.011 15.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|118431889|ref|NP_148637.2| - 2.6e-06 27.5 0.0 0.04 13.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|118431889|ref|NP_148637.2| - 3.1e-06 27.3 0.0 0.052 13.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.11 gi|118431889|ref|NP_148637.2| - 1.4e-05 24.4 0.4 0.11 11.6 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein Vps4_C PF09336.5 gi|118431889|ref|NP_148637.2| - 1.8e-05 24.5 0.1 0.049 13.5 0.0 3.4 4 0 0 4 4 2 1 Vps4 C terminal oligomerisation domain NACHT PF05729.7 gi|118431889|ref|NP_148637.2| - 2.3e-05 24.1 0.2 0.69 9.5 0.0 3.7 4 0 0 4 4 4 2 NACHT domain DUF815 PF05673.8 gi|118431889|ref|NP_148637.2| - 5.9e-05 22.1 0.0 0.17 10.7 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|118431889|ref|NP_148637.2| - 8.2e-05 22.9 0.0 0.46 10.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|118431889|ref|NP_148637.2| - 0.00012 21.6 0.0 0.43 10.1 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|118431889|ref|NP_148637.2| - 0.00014 20.8 0.1 0.16 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|118431889|ref|NP_148637.2| - 0.00018 20.5 0.0 0.072 12.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|118431889|ref|NP_148637.2| - 0.00036 20.2 0.2 4.4 6.9 0.0 4.1 2 1 1 3 3 3 0 NTPase NB-ARC PF00931.17 gi|118431889|ref|NP_148637.2| - 0.00085 18.2 0.0 0.34 9.7 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain UFD1 PF03152.9 gi|118431889|ref|NP_148637.2| - 0.001 18.2 0.0 0.005 16.0 0.0 1.9 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 SKI PF01202.17 gi|118431889|ref|NP_148637.2| - 0.0025 17.6 0.0 2 8.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase UPF0079 PF02367.12 gi|118431889|ref|NP_148637.2| - 0.0026 17.3 0.0 3.1 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_11 PF13086.1 gi|118431889|ref|NP_148637.2| - 0.0034 16.9 0.0 2.4 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|118431889|ref|NP_148637.2| - 0.004 16.6 0.0 2.5 7.5 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|118431889|ref|NP_148637.2| - 0.0041 16.7 0.0 4.1 6.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.13 gi|118431889|ref|NP_148637.2| - 0.0051 16.4 0.0 0.61 9.6 0.0 2.9 3 1 0 3 3 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|118431889|ref|NP_148637.2| - 0.0098 14.8 0.0 1.9 7.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein IPT PF01745.11 gi|118431889|ref|NP_148637.2| - 0.015 14.5 0.1 1.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase ResIII PF04851.10 gi|118431889|ref|NP_148637.2| - 0.019 14.7 0.0 8.1 6.2 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.11 gi|118431889|ref|NP_148637.2| - 0.028 13.2 0.0 3.5 6.3 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase AAA_10 PF12846.2 gi|118431889|ref|NP_148637.2| - 0.04 13.3 1.8 11 5.3 0.1 3.8 3 2 0 3 3 2 0 AAA-like domain Viral_helicase1 PF01443.13 gi|118431889|ref|NP_148637.2| - 0.054 12.9 0.0 3.2 7.2 0.0 2.6 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|118431889|ref|NP_148637.2| - 0.065 12.7 0.0 6.7 6.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|118431889|ref|NP_148637.2| - 0.69 9.8 1.2 29 4.4 0.5 3.0 2 1 0 2 2 2 0 AAA domain EF1_GNE PF00736.14 gi|118431890|ref|NP_148638.2| - 2.6e-21 75.0 0.9 2.8e-21 74.9 0.6 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3970 PF13113.1 gi|118431890|ref|NP_148638.2| - 0.086 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) P2 PF07194.6 gi|118431890|ref|NP_148638.2| - 0.22 11.4 1.2 0.37 10.6 0.5 1.8 1 1 1 2 2 2 0 P2 response regulator binding domain DUF1610 PF07754.6 gi|118431891|ref|YP_874949.1| - 6.3e-13 48.5 20.6 9.2e-07 28.8 5.2 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|118431891|ref|YP_874949.1| - 5.3e-05 22.2 16.2 0.1 11.8 0.8 3.9 4 0 0 4 4 4 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|118431891|ref|YP_874949.1| - 0.0003 20.1 16.8 0.00085 18.7 1.5 3.2 2 2 0 2 2 2 1 zinc-ribbon domain PolC_DP2 PF03833.8 gi|118431891|ref|YP_874949.1| - 0.00047 17.9 4.6 0.00047 17.9 3.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|118431891|ref|YP_874949.1| - 0.0012 18.4 11.9 0.013 15.0 0.8 2.5 1 1 2 3 3 3 2 Putative transposase DNA-binding domain DUF2072 PF09845.4 gi|118431891|ref|YP_874949.1| - 0.0017 18.2 1.5 0.0017 18.2 1.0 2.1 1 1 1 2 2 2 1 Zn-ribbon containing protein (DUF2072) DZR PF12773.2 gi|118431891|ref|YP_874949.1| - 0.0082 15.9 13.2 0.64 9.8 9.2 2.5 1 1 0 1 1 1 1 Double zinc ribbon zf-MYND PF01753.13 gi|118431891|ref|YP_874949.1| - 0.012 15.4 7.3 0.19 11.6 0.1 2.2 1 1 1 2 2 2 0 MYND finger HypA PF01155.14 gi|118431891|ref|YP_874949.1| - 0.023 14.3 0.4 0.023 14.3 0.2 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF3039 PF11238.3 gi|118431891|ref|YP_874949.1| - 0.084 12.3 0.9 0.084 12.3 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3039) IBR PF01485.16 gi|118431891|ref|YP_874949.1| - 0.085 12.7 10.0 1.9 8.4 6.9 2.2 1 1 0 1 1 1 0 IBR domain zf-B_box PF00643.19 gi|118431891|ref|YP_874949.1| - 0.12 12.3 1.5 0.12 12.3 1.1 2.6 1 1 1 2 2 2 0 B-box zinc finger C1_3 PF07649.7 gi|118431891|ref|YP_874949.1| - 0.12 12.4 1.2 0.12 12.4 0.8 2.6 2 1 1 3 3 3 0 C1-like domain TF_Zn_Ribbon PF08271.7 gi|118431891|ref|YP_874949.1| - 0.15 11.3 19.6 1.3 8.3 0.5 3.5 1 1 2 3 3 3 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|118431891|ref|YP_874949.1| - 0.16 11.4 14.9 0.21 11.1 2.8 3.7 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-RING_3 PF14369.1 gi|118431891|ref|YP_874949.1| - 0.17 11.9 0.9 0.17 11.9 0.6 2.8 1 1 1 2 2 2 0 zinc-finger C1_1 PF00130.17 gi|118431891|ref|YP_874949.1| - 0.2 11.4 7.8 0.92 9.2 2.7 2.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HC5 PF06221.8 gi|118431891|ref|YP_874949.1| - 0.2 11.4 9.7 0.19 11.5 1.7 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Desulfoferrod_N PF06397.7 gi|118431891|ref|YP_874949.1| - 0.21 10.9 9.9 0.36 10.2 0.0 3.7 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|118431891|ref|YP_874949.1| - 0.28 11.5 12.3 3.3 8.1 0.1 3.8 3 1 1 4 4 4 0 Zinc-finger double domain zf-UBP PF02148.14 gi|118431891|ref|YP_874949.1| - 0.3 11.2 5.9 7.7 6.7 3.6 2.9 1 1 2 3 3 3 0 Zn-finger in ubiquitin-hydrolases and other protein zf-C3HC4_4 PF15227.1 gi|118431891|ref|YP_874949.1| - 0.35 10.7 6.9 1.4 8.8 0.2 2.4 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING Lar_restr_allev PF14354.1 gi|118431891|ref|YP_874949.1| - 0.37 11.1 12.3 0.8 10.0 5.7 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|118431891|ref|YP_874949.1| - 0.41 10.3 15.6 0.4 10.4 2.4 3.7 3 1 1 4 4 4 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|118431891|ref|YP_874949.1| - 0.53 10.1 21.6 11 5.8 0.1 3.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|118431891|ref|YP_874949.1| - 0.57 10.0 11.6 0.15 11.8 3.2 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Spt4 PF06093.8 gi|118431891|ref|YP_874949.1| - 0.71 9.7 6.8 44 4.0 4.7 2.1 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger DUF1272 PF06906.6 gi|118431891|ref|YP_874949.1| - 0.8 9.6 12.6 25 4.8 8.7 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-HIT PF04438.11 gi|118431891|ref|YP_874949.1| - 1 9.0 18.5 0.32 10.6 4.7 3.1 1 1 2 3 3 3 0 HIT zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|118431891|ref|YP_874949.1| - 1.2 9.6 11.6 2.1e+02 2.3 8.0 2.5 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF164 PF02591.10 gi|118431891|ref|YP_874949.1| - 1.3 8.9 13.5 3 7.7 0.1 3.4 2 1 1 3 3 3 0 Putative zinc ribbon domain zf-C2H2 PF00096.21 gi|118431891|ref|YP_874949.1| - 1.6 9.2 14.8 6.8 7.2 0.4 4.0 4 0 0 4 4 4 0 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|118431891|ref|YP_874949.1| - 1.7 8.3 14.7 3 7.5 0.4 3.7 3 1 0 3 3 3 0 Adenylate kinase, active site lid Rubredoxin PF00301.15 gi|118431891|ref|YP_874949.1| - 1.8 8.5 16.4 3.7 7.4 0.2 4.1 1 1 2 3 3 3 0 Rubredoxin Sgf11 PF08209.6 gi|118431891|ref|YP_874949.1| - 1.8 7.9 20.8 1.1 8.6 0.5 3.9 2 2 2 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|118431891|ref|YP_874949.1| - 1.8 8.2 17.8 4.5 7.0 0.5 4.1 3 1 1 4 4 4 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|118431891|ref|YP_874949.1| - 1.9 8.4 12.4 4 7.3 1.6 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TerY-C PF15616.1 gi|118431891|ref|YP_874949.1| - 2 8.3 11.6 13 5.7 8.1 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain Zn-ribbon_8 PF09723.5 gi|118431891|ref|YP_874949.1| - 3.3 7.7 18.5 0.63 10.0 2.9 3.6 1 1 1 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|118431891|ref|YP_874949.1| - 3.3 6.9 16.3 7.8 5.7 7.3 3.2 2 1 1 3 3 3 0 Transcription factor zinc-finger DUF35_N PF12172.3 gi|118431891|ref|YP_874949.1| - 3.6 7.6 20.3 13 5.8 3.4 3.8 1 1 2 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2296 PF10058.4 gi|118431891|ref|YP_874949.1| - 3.7 7.3 16.0 4.2 7.2 0.3 3.7 1 1 3 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_5 PF13719.1 gi|118431891|ref|YP_874949.1| - 3.8 7.1 18.6 8.7 6.0 0.3 4.1 3 1 0 4 4 4 0 zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|118431891|ref|YP_874949.1| - 4 7.3 9.6 9.7 6.1 4.3 2.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-RING_5 PF14634.1 gi|118431891|ref|YP_874949.1| - 4.2 7.1 11.3 1.1 9.0 1.1 2.6 2 1 0 2 2 2 0 zinc-RING finger domain UPF0547 PF10571.4 gi|118431891|ref|YP_874949.1| - 5.4 6.8 16.9 3.8 7.2 0.4 3.7 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|118431891|ref|YP_874949.1| - 7.2 6.1 13.0 14 5.2 0.1 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_ribbon_recom PF13408.1 gi|118431891|ref|YP_874949.1| - 8.3 6.7 12.1 18 5.7 8.4 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Elf1 PF05129.8 gi|118431891|ref|YP_874949.1| - 9.4 6.0 12.9 0.15 11.7 2.3 2.5 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|118431891|ref|YP_874949.1| - 9.4 6.3 22.6 7.9 6.6 0.6 4.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-AN1 PF01428.11 gi|118431891|ref|YP_874949.1| - 9.6 6.1 14.0 12 5.8 2.9 2.8 2 1 1 3 3 3 0 AN1-like Zinc finger DUF1464 PF07318.7 gi|118431892|ref|NP_148640.2| - 1.6e-130 434.9 0.1 1.8e-130 434.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) His_Phos_1 PF00300.17 gi|118431893|ref|NP_148641.2| - 3.8e-13 49.8 0.0 5.3e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) DUF95 PF01944.12 gi|118431894|ref|NP_148642.2| - 4e-26 91.6 16.6 5.6e-26 91.2 11.5 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF95 Arteri_Gl PF00951.13 gi|118431894|ref|NP_148642.2| - 2.1 7.8 6.4 0.59 9.7 1.3 1.8 1 1 1 2 2 2 0 Arterivirus GL envelope glycoprotein GCD14 PF08704.5 gi|118431895|ref|NP_148643.2| - 5.9e-21 75.0 0.0 7.5e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|118431895|ref|NP_148643.2| - 9.6e-12 44.9 0.3 2.5e-11 43.6 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|118431895|ref|NP_148643.2| - 8.7e-09 35.9 0.0 1.2e-08 35.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|118431895|ref|NP_148643.2| - 4.1e-08 33.0 0.0 6.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|118431895|ref|NP_148643.2| - 2.9e-07 30.2 0.0 3.9e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|118431895|ref|NP_148643.2| - 7.7e-07 28.3 0.0 1.2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.7 gi|118431895|ref|NP_148643.2| - 0.00079 19.8 0.0 0.0013 19.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|118431895|ref|NP_148643.2| - 0.001 18.6 0.0 0.0021 17.6 0.0 1.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|118431895|ref|NP_148643.2| - 0.0014 18.9 0.0 0.002 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|118431895|ref|NP_148643.2| - 0.006 17.3 0.0 0.0095 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|118431895|ref|NP_148643.2| - 0.075 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|118431895|ref|NP_148643.2| - 0.13 12.7 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CBS PF00571.23 gi|118431896|ref|NP_148644.2| - 2.3e-36 123.2 8.9 1.4e-18 66.3 0.3 2.1 2 0 0 2 2 2 2 CBS domain SporV_AA PF12164.3 gi|118431896|ref|NP_148644.2| - 0.14 12.1 0.3 0.33 10.9 0.1 1.8 2 0 0 2 2 2 0 Stage V sporulation protein AA FTR1 PF03239.9 gi|118431897|ref|NP_148645.2| - 1.1e-64 218.3 20.6 1.2e-64 218.1 14.3 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family Radical_SAM PF04055.16 gi|118431899|ref|NP_148647.2| - 9.3e-17 61.6 0.0 1.4e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HIT PF01230.18 gi|118431900|ref|NP_148648.2| - 2e-22 79.5 0.0 5.8e-22 78.0 0.0 1.6 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|118431900|ref|NP_148648.2| - 1.6e-11 44.4 0.0 2.7e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|118431900|ref|NP_148648.2| - 0.0031 17.1 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 BAGE PF08180.6 gi|118431900|ref|NP_148648.2| - 0.45 10.2 3.4 0.82 9.4 2.4 1.4 1 0 0 1 1 1 0 B melanoma antigen family Thioredoxin PF00085.15 gi|118431901|ref|NP_148649.2| - 2.4e-14 52.8 0.0 3.5e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|118431901|ref|NP_148649.2| - 1.8e-12 47.4 0.5 9.1e-11 41.9 0.3 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|118431901|ref|NP_148649.2| - 7.4e-05 22.4 0.0 0.00019 21.1 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin domain DSBA PF01323.15 gi|118431901|ref|NP_148649.2| - 0.0053 16.3 0.3 0.19 11.2 0.1 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Redoxin PF08534.5 gi|118431901|ref|NP_148649.2| - 0.0075 15.8 0.0 0.0095 15.4 0.0 1.2 1 0 0 1 1 1 1 Redoxin Glutaredoxin PF00462.19 gi|118431901|ref|NP_148649.2| - 0.0087 16.0 0.1 0.027 14.4 0.0 1.9 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|118431901|ref|NP_148649.2| - 0.0088 16.0 0.2 0.33 10.9 0.2 2.1 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|118431901|ref|NP_148649.2| - 0.039 13.9 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like TraF PF13728.1 gi|118431901|ref|NP_148649.2| - 0.077 12.4 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_8 PF13905.1 gi|118431901|ref|NP_148649.2| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like MarC PF01914.12 gi|14602102|ref|NP_148650.1| - 1.2e-32 112.6 14.3 1.5e-32 112.3 9.9 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein 4HBT PF03061.17 gi|118431902|ref|NP_148651.2| - 1.7e-07 31.2 0.1 2.4e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily MMPL PF03176.10 gi|118431903|ref|NP_148652.2| - 2.7e-53 180.8 30.6 5.2e-28 97.7 8.1 2.4 2 0 0 2 2 2 2 MMPL family Amidohydro_2 PF04909.9 gi|118431904|ref|NP_148654.2| - 4.5e-63 213.3 0.1 5.6e-63 213.0 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase adh_short PF00106.20 gi|118431905|ref|NP_148655.2| - 6.4e-34 117.2 1.8 8.1e-34 116.9 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|118431905|ref|NP_148655.2| - 6.7e-25 88.2 0.0 8.1e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|118431905|ref|NP_148655.2| - 2.5e-14 53.3 0.4 5.3e-14 52.2 0.3 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|118431905|ref|NP_148655.2| - 4.2e-05 23.0 0.1 0.00014 21.3 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|118431905|ref|NP_148655.2| - 0.0086 15.2 0.0 0.02 14.0 0.0 1.6 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) HHH_5 PF14520.1 gi|118431905|ref|NP_148655.2| - 0.051 13.7 0.1 8 6.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain TrmB PF01978.14 gi|14602108|ref|NP_148656.1| - 6.8e-09 35.3 2.2 1.7e-08 34.0 0.2 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|14602108|ref|NP_148656.1| - 8.2e-07 28.6 1.2 1.3e-06 27.9 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|14602108|ref|NP_148656.1| - 4.5e-06 26.1 0.3 2.6e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|14602108|ref|NP_148656.1| - 2.5e-05 23.5 0.2 0.00016 21.0 0.1 2.4 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|14602108|ref|NP_148656.1| - 2.6e-05 24.2 0.0 5.1e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.1 gi|14602108|ref|NP_148656.1| - 0.0001 22.5 0.5 0.0013 19.0 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|14602108|ref|NP_148656.1| - 0.00016 21.2 0.1 0.00067 19.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|14602108|ref|NP_148656.1| - 0.00017 21.3 0.6 0.00069 19.3 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|14602108|ref|NP_148656.1| - 0.00055 19.8 3.4 0.0071 16.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain VPS11_C PF12451.3 gi|14602108|ref|NP_148656.1| - 0.00074 19.3 0.1 0.0013 18.5 0.1 1.3 1 0 0 1 1 1 1 Vacuolar protein sorting protein 11 C terminal Sulfolobus_pRN PF05584.6 gi|14602108|ref|NP_148656.1| - 0.00088 19.1 0.2 0.0024 17.7 0.0 1.7 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein PaaX PF07848.7 gi|14602108|ref|NP_148656.1| - 0.0024 17.8 1.4 0.0031 17.4 0.2 1.7 2 0 0 2 2 1 1 PaaX-like protein PadR PF03551.9 gi|14602108|ref|NP_148656.1| - 0.0054 16.4 0.2 0.025 14.3 0.1 2.0 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|14602108|ref|NP_148656.1| - 0.0065 16.5 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DivIVA PF05103.8 gi|14602108|ref|NP_148656.1| - 0.0068 16.4 0.5 0.0095 15.9 0.3 1.2 1 0 0 1 1 1 1 DivIVA protein HTH_23 PF13384.1 gi|14602108|ref|NP_148656.1| - 0.0079 15.8 1.6 3.3 7.5 0.0 2.4 2 0 0 2 2 2 2 Homeodomain-like domain TFIIE_alpha PF02002.12 gi|14602108|ref|NP_148656.1| - 0.012 15.0 0.1 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.1 gi|14602108|ref|NP_148656.1| - 0.012 15.7 3.1 0.015 15.4 0.1 2.1 2 1 0 2 2 2 0 Winged helix-turn helix HTH_45 PF14947.1 gi|14602108|ref|NP_148656.1| - 0.014 15.2 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|14602108|ref|NP_148656.1| - 0.023 14.3 1.4 0.027 14.1 0.0 1.9 2 0 0 2 2 1 0 MarR family SlyX PF04102.7 gi|14602108|ref|NP_148656.1| - 0.058 13.7 0.2 0.11 12.8 0.2 1.5 1 0 0 1 1 1 0 SlyX Med9 PF07544.8 gi|14602108|ref|NP_148656.1| - 0.059 13.1 0.5 0.1 12.3 0.3 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF4423 PF14394.1 gi|14602108|ref|NP_148656.1| - 0.084 12.4 0.1 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|14602108|ref|NP_148656.1| - 0.13 12.4 0.4 0.3 11.2 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator Mnd1 PF03962.10 gi|14602108|ref|NP_148656.1| - 0.16 11.6 0.9 5.1 6.7 0.3 2.1 2 0 0 2 2 2 0 Mnd1 family TMF_DNA_bd PF12329.3 gi|14602108|ref|NP_148656.1| - 0.19 11.5 1.9 0.31 10.8 1.3 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding 2-Hacid_dh_C PF02826.14 gi|118431906|ref|NP_148658.2| - 3.3e-58 195.7 0.0 4.4e-58 195.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|118431906|ref|NP_148658.2| - 2e-27 95.2 0.0 2.3e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|118431906|ref|NP_148658.2| - 5.8e-05 22.9 0.0 9.6e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|118431906|ref|NP_148658.2| - 0.011 15.6 0.1 0.059 13.3 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain GFO_IDH_MocA PF01408.17 gi|118431906|ref|NP_148658.2| - 0.034 14.6 0.0 0.2 12.1 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|118431906|ref|NP_148658.2| - 0.045 13.1 0.0 0.099 12.0 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain OST-HTH PF12872.2 gi|118431906|ref|NP_148658.2| - 0.09 12.6 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 OST-HTH/LOTUS domain Shikimate_DH PF01488.15 gi|118431906|ref|NP_148658.2| - 0.097 12.7 0.0 0.39 10.7 0.0 2.1 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TPP_enzyme_N PF02776.13 gi|14602111|ref|NP_148659.1| - 2.4e-47 160.6 0.3 4.9e-47 159.6 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|14602111|ref|NP_148659.1| - 1.8e-28 99.0 0.0 4.4e-28 97.7 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|14602111|ref|NP_148659.1| - 4.8e-22 78.1 0.0 1.5e-21 76.6 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain F420_ligase PF01996.11 gi|14602111|ref|NP_148659.1| - 0.14 11.2 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase ABC2_membrane PF01061.19 gi|14602112|ref|NP_148660.1| - 3.5e-16 59.0 14.1 4.9e-16 58.5 9.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|14602112|ref|NP_148660.1| - 9.6e-11 41.3 18.6 1.2e-10 40.9 12.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|14602112|ref|NP_148660.1| - 9.2e-08 31.2 13.3 9.2e-08 31.2 9.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.6 gi|14602112|ref|NP_148660.1| - 9.1e-05 22.1 4.3 0.00015 21.3 3.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein OATP PF03137.15 gi|14602112|ref|NP_148660.1| - 0.049 11.6 0.4 0.09 10.8 0.3 1.3 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family ABC2_membrane PF01061.19 gi|14602113|ref|NP_148661.1| - 3.9e-13 49.0 16.0 3.9e-13 49.0 11.1 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|14602113|ref|NP_148661.1| - 0.046 12.7 22.7 0.014 14.4 12.0 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein Oxidored_q2 PF00420.19 gi|14602113|ref|NP_148661.1| - 3 7.5 9.0 0.12 11.9 2.0 1.9 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC_tran PF00005.22 gi|14602114|ref|NP_148662.1| - 3.9e-26 91.9 0.0 6.8e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14602114|ref|NP_148662.1| - 7.1e-16 59.0 0.1 1.2e-09 38.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|14602114|ref|NP_148662.1| - 5.3e-05 22.6 0.1 9.6e-05 21.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|14602114|ref|NP_148662.1| - 0.0003 20.8 0.3 0.0061 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|14602114|ref|NP_148662.1| - 0.00035 19.7 0.0 0.064 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|14602114|ref|NP_148662.1| - 0.00087 18.9 0.7 0.014 15.1 0.1 2.6 2 0 0 2 2 2 1 Part of AAA domain DUF4162 PF13732.1 gi|14602114|ref|NP_148662.1| - 0.0012 19.3 0.0 0.0021 18.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) NTPase_1 PF03266.10 gi|14602114|ref|NP_148662.1| - 0.0033 17.1 0.1 0.48 10.1 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|14602114|ref|NP_148662.1| - 0.0053 17.1 0.0 0.0083 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|14602114|ref|NP_148662.1| - 0.034 14.0 0.0 0.081 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|14602114|ref|NP_148662.1| - 0.042 13.4 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|14602114|ref|NP_148662.1| - 0.05 13.8 0.0 0.18 12.0 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|14602114|ref|NP_148662.1| - 0.056 13.1 0.1 0.66 9.6 0.0 2.2 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|14602114|ref|NP_148662.1| - 0.079 13.7 0.1 0.19 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain WIYLD PF10440.4 gi|14602114|ref|NP_148662.1| - 0.089 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain AAA_5 PF07728.9 gi|14602114|ref|NP_148662.1| - 0.12 12.1 0.0 0.3 10.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|14602114|ref|NP_148662.1| - 0.12 11.9 0.1 1 8.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|14602114|ref|NP_148662.1| - 0.12 11.7 1.1 0.62 9.4 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|14602114|ref|NP_148662.1| - 0.16 11.3 0.1 0.8 9.0 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|14602114|ref|NP_148662.1| - 0.19 11.2 0.1 0.53 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain HxlR PF01638.12 gi|118431907|ref|NP_148663.2| - 8e-24 83.0 0.1 9.9e-24 82.7 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|118431907|ref|NP_148663.2| - 0.026 14.2 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4423 PF14394.1 gi|118431907|ref|NP_148663.2| - 0.038 13.5 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_5 PF01022.15 gi|118431907|ref|NP_148663.2| - 0.053 13.1 0.1 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|118431907|ref|NP_148663.2| - 0.055 13.8 0.0 0.092 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Glyoxalase_2 PF12681.2 gi|118431908|ref|NP_148664.2| - 1.6e-13 51.1 0.0 5.2e-08 33.4 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|118431908|ref|NP_148664.2| - 4.2e-12 46.1 0.0 2.6e-05 24.1 0.0 2.6 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|118431908|ref|NP_148664.2| - 0.00012 22.0 0.0 0.096 12.7 0.0 2.9 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Asp_Glu_race PF01177.17 gi|118431909|ref|NP_148665.2| - 1.5e-32 113.3 0.0 1.7e-32 113.1 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.6 gi|118431909|ref|NP_148665.2| - 0.008 15.5 0.0 0.33 10.2 0.0 2.4 2 1 0 2 2 2 2 AroM protein Peripla_BP_6 PF13458.1 gi|118431910|ref|NP_148666.2| - 1.6e-57 195.4 0.3 1.7e-57 195.2 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|118431910|ref|NP_148666.2| - 1.4e-30 106.2 0.0 2e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|118431910|ref|NP_148666.2| - 1.4e-23 83.2 0.0 7.2e-23 80.9 0.0 2.1 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.8 gi|118431910|ref|NP_148666.2| - 0.00025 19.7 0.1 0.00042 19.0 0.1 1.3 1 0 0 1 1 1 1 LppC putative lipoprotein BPD_transp_2 PF02653.11 gi|118431911|ref|NP_148667.2| - 9.5e-38 129.6 47.0 1.1e-37 129.4 32.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|118431912|ref|NP_148668.2| - 1.4e-32 112.7 34.5 1.6e-32 112.5 23.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|118431913|ref|NP_148669.2| - 3.5e-27 95.3 0.0 4.5e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|118431913|ref|NP_148669.2| - 2.3e-09 36.7 0.0 5.7e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|118431913|ref|NP_148669.2| - 3e-08 33.9 0.5 0.00012 22.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|118431913|ref|NP_148669.2| - 0.0003 20.2 0.0 0.00056 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|118431913|ref|NP_148669.2| - 0.00065 19.2 0.0 0.00083 18.9 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|118431913|ref|NP_148669.2| - 0.0019 18.5 0.1 0.0035 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|118431913|ref|NP_148669.2| - 0.0067 16.6 0.3 0.32 11.1 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|118431913|ref|NP_148669.2| - 0.0067 16.3 0.6 0.016 15.1 0.4 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase KdpD PF02702.12 gi|118431913|ref|NP_148669.2| - 0.007 15.5 0.2 0.01 14.9 0.2 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_19 PF13245.1 gi|118431913|ref|NP_148669.2| - 0.008 15.9 0.1 0.052 13.3 0.0 2.4 2 1 1 3 3 3 1 Part of AAA domain SMC_N PF02463.14 gi|118431913|ref|NP_148669.2| - 0.019 14.1 0.9 1.8 7.7 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|118431913|ref|NP_148669.2| - 0.02 15.0 1.5 4.1 7.5 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|118431913|ref|NP_148669.2| - 0.025 15.3 0.3 0.074 13.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|118431913|ref|NP_148669.2| - 0.06 12.7 0.5 0.95 8.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|118431913|ref|NP_148669.2| - 0.065 12.4 0.0 0.1 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|118431913|ref|NP_148669.2| - 0.1 12.5 0.1 0.19 11.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|118431913|ref|NP_148669.2| - 0.12 12.0 0.1 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|118431913|ref|NP_148669.2| - 0.12 11.7 0.5 0.65 9.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|14602122|ref|NP_148670.1| - 8.8e-31 107.0 0.0 1.2e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|14602122|ref|NP_148670.1| - 9.6e-09 35.6 1.5 6.9e-07 29.5 1.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|14602122|ref|NP_148670.1| - 0.0036 16.7 0.1 0.0063 16.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|14602122|ref|NP_148670.1| - 0.0061 15.9 0.1 0.071 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|14602122|ref|NP_148670.1| - 0.043 13.2 0.0 0.068 12.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|14602122|ref|NP_148670.1| - 0.057 13.1 6.0 0.062 13.0 1.4 2.6 3 1 0 3 3 3 0 Part of AAA domain AAA_23 PF13476.1 gi|14602122|ref|NP_148670.1| - 0.18 12.0 0.2 0.29 11.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain Hydantoinase_A PF01968.13 gi|118431914|ref|NP_148671.2| - 3e-94 315.3 0.7 8.1e-92 307.4 0.0 2.1 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|118431914|ref|NP_148671.2| - 3.2e-48 163.5 0.5 6.8e-48 162.4 0.0 1.8 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|118431914|ref|NP_148671.2| - 0.013 13.8 0.3 2.4 6.4 0.0 2.1 2 0 0 2 2 2 0 MutL protein BcrAD_BadFG PF01869.15 gi|118431914|ref|NP_148671.2| - 0.027 13.7 0.0 1.4 8.1 0.0 2.5 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DUF294 PF03445.8 gi|118431914|ref|NP_148671.2| - 0.15 11.7 0.0 1.1 8.9 0.0 2.2 3 0 0 3 3 3 0 Putative nucleotidyltransferase DUF294 Hydantoinase_B PF02538.9 gi|118431915|ref|NP_148673.2| - 1.8e-162 541.2 0.0 2e-162 541.0 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Thioredox_DsbH PF03190.10 gi|118431916|ref|NP_148674.2| - 4.2e-62 208.6 0.0 7.2e-62 207.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|118431916|ref|NP_148674.2| - 1.5e-13 50.5 0.0 2.7e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|118431916|ref|NP_148674.2| - 0.0094 16.1 0.0 0.022 14.9 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain C5-epim_C PF06662.8 gi|118431916|ref|NP_148674.2| - 0.026 13.8 0.3 0.23 10.7 0.0 2.4 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.8 gi|118431916|ref|NP_148674.2| - 0.13 11.2 0.2 6.3 5.7 0.0 2.7 3 0 0 3 3 3 0 Glycosyl Hydrolase Family 88 DUF998 PF06197.8 gi|118431917|ref|NP_148675.2| - 1.2e-27 96.4 27.6 1.4e-27 96.2 19.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Herpes_UL49_5 PF05702.6 gi|118431917|ref|NP_148675.2| - 0.16 11.8 2.8 0.27 11.1 0.2 2.4 2 0 0 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein DUF3112 PF11309.3 gi|118431917|ref|NP_148675.2| - 0.3 10.8 4.3 0.56 9.9 0.6 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3112) EamA PF00892.15 gi|118431918|ref|NP_148677.2| - 5.7e-20 71.6 32.7 7.2e-12 45.4 10.3 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|118431918|ref|NP_148677.2| - 0.31 11.2 32.9 0.11 12.7 6.6 3.8 2 2 2 4 4 4 0 Multidrug resistance efflux transporter DUF2198 PF09964.4 gi|118431918|ref|NP_148677.2| - 0.39 10.5 5.6 9.7 6.0 0.4 2.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) TPT PF03151.11 gi|118431918|ref|NP_148677.2| - 0.62 9.7 21.8 0.15 11.7 1.5 2.9 3 1 0 3 3 3 0 Triose-phosphate Transporter family Na_H_antiporter PF03553.9 gi|14602130|ref|NP_148678.1| - 1.6e-95 319.6 23.7 1.6e-95 319.6 16.4 2.5 1 1 1 2 2 2 2 Na+/H+ antiporter family tRNA_edit PF04073.10 gi|118431919|ref|NP_148681.2| - 9.5e-31 106.2 0.1 1.1e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HTH_17 PF12728.2 gi|118431919|ref|NP_148681.2| - 0.013 15.7 0.7 0.079 13.2 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain DctM PF06808.7 gi|118431920|ref|NP_148683.2| - 3.1e-92 309.3 49.8 3.1e-92 309.3 34.5 2.3 3 0 0 3 3 3 2 DctM-like transporters TrbC PF04956.8 gi|118431921|ref|NP_148684.2| - 0.04 13.9 0.3 0.081 12.9 0.2 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF1510 PF07423.6 gi|118431921|ref|NP_148684.2| - 0.13 11.6 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) IGPS PF00218.16 gi|14602137|ref|NP_148685.1| - 1.8e-52 177.9 0.0 2.4e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.16 gi|14602137|ref|NP_148685.1| - 0.00012 21.1 0.0 0.00018 20.5 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|14602137|ref|NP_148685.1| - 0.00022 20.2 0.0 0.0017 17.3 0.0 2.0 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|14602137|ref|NP_148685.1| - 0.00032 20.0 0.0 0.00058 19.2 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|14602137|ref|NP_148685.1| - 0.00053 19.3 0.0 0.00081 18.7 0.0 1.3 1 0 0 1 1 1 1 PcrB family ThiG PF05690.9 gi|14602137|ref|NP_148685.1| - 0.016 14.2 0.1 0.043 12.9 0.0 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|14602137|ref|NP_148685.1| - 0.017 14.0 0.0 0.029 13.2 0.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Dus PF01207.12 gi|14602137|ref|NP_148685.1| - 0.024 13.4 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) PA PF02225.17 gi|14602137|ref|NP_148685.1| - 0.056 13.1 0.1 0.44 10.2 0.0 2.1 2 0 0 2 2 2 0 PA domain FMN_dh PF01070.13 gi|14602137|ref|NP_148685.1| - 0.084 11.7 0.2 0.25 10.1 0.0 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PRAI PF00697.17 gi|14602138|ref|NP_148686.1| - 2.9e-13 49.8 0.0 6.2e-13 48.7 0.0 1.5 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.20 gi|14602139|ref|NP_148687.1| - 3.7e-43 147.9 0.6 4.4e-43 147.6 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|14602140|ref|NP_148688.1| - 3.9e-26 91.1 0.0 5.1e-26 90.7 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|14602140|ref|NP_148688.1| - 5.5e-05 22.5 0.0 8.1e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 PcrB family NanE PF04131.9 gi|14602140|ref|NP_148688.1| - 0.00095 18.1 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|14602140|ref|NP_148688.1| - 0.029 13.4 0.0 0.056 12.5 0.0 1.4 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|14602140|ref|NP_148688.1| - 0.037 13.1 0.0 0.077 12.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|14602140|ref|NP_148688.1| - 0.037 13.2 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|14602140|ref|NP_148688.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|14602140|ref|NP_148688.1| - 0.14 11.1 0.0 0.34 9.8 0.0 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Glycos_transf_3 PF00591.16 gi|14602141|ref|NP_148689.1| - 2.1e-83 279.5 0.4 2.8e-83 279.2 0.3 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|14602141|ref|NP_148689.1| - 3.5e-15 55.3 0.0 8.7e-15 54.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.13 gi|118431922|ref|NP_148690.2| - 2.6e-87 292.4 0.0 3.9e-87 291.8 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|118431922|ref|NP_148690.2| - 4.2e-05 23.5 0.1 0.00086 19.3 0.0 2.8 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|14602143|ref|NP_148691.1| - 3.8e-53 179.8 0.0 4.6e-53 179.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|14602143|ref|NP_148691.1| - 6.3e-12 45.3 0.0 1.8e-11 43.9 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|14602143|ref|NP_148691.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Molydop_binding PF01568.16 gi|118431923|ref|NP_148692.2| - 9e-25 86.6 0.4 1.7e-24 85.7 0.3 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|118431923|ref|NP_148692.2| - 9.7e-24 83.8 0.3 5.4e-10 38.5 0.0 3.4 4 0 0 4 4 4 3 Molybdopterin oxidoreductase CDC48_N PF02359.13 gi|118431923|ref|NP_148692.2| - 0.00082 19.2 0.2 0.0037 17.1 0.0 2.1 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molybdop_Fe4S4 PF04879.11 gi|118431923|ref|NP_148692.2| - 0.0093 15.7 0.2 0.023 14.5 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Rieske PF00355.21 gi|14602146|ref|NP_148694.1| - 5.4e-13 48.3 0.0 2.3e-12 46.3 0.0 2.1 2 1 0 2 2 2 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|14602146|ref|NP_148694.1| - 0.0051 16.7 4.3 0.012 15.5 2.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|14602146|ref|NP_148694.1| - 0.015 14.4 3.4 0.03 13.5 2.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HTH_AsnC-type PF13404.1 gi|118431924|ref|NP_148695.2| - 1.8e-11 43.4 0.3 3.3e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|118431924|ref|NP_148695.2| - 3e-11 42.5 1.0 4.2e-11 42.0 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|118431924|ref|NP_148695.2| - 0.0013 18.3 0.0 0.034 13.8 0.0 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|118431924|ref|NP_148695.2| - 0.0024 17.5 0.0 0.0075 15.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|118431924|ref|NP_148695.2| - 0.0045 16.6 0.0 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|118431924|ref|NP_148695.2| - 0.0059 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|118431924|ref|NP_148695.2| - 0.011 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Ribosomal_L24e PF01246.15 gi|118431924|ref|NP_148695.2| - 0.011 15.5 0.1 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L24e TFIIE_alpha PF02002.12 gi|118431924|ref|NP_148695.2| - 0.048 13.1 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|118431924|ref|NP_148695.2| - 0.075 12.7 0.0 0.7 9.6 0.0 2.1 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|118431924|ref|NP_148695.2| - 0.086 12.9 0.1 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator GntR PF00392.16 gi|118431924|ref|NP_148695.2| - 0.09 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family GHMP_kinases_C PF08544.8 gi|118431924|ref|NP_148695.2| - 0.14 12.3 0.0 2.4 8.4 0.0 2.1 2 0 0 2 2 2 0 GHMP kinases C terminal AhpC-TSA PF00578.16 gi|118431925|ref|NP_148697.2| - 1.3e-07 31.3 0.0 3.4e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|118431925|ref|NP_148697.2| - 3.3e-06 27.1 0.0 5.5e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|118431925|ref|NP_148697.2| - 7.1e-06 25.6 0.0 5.3e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin Redoxin PF08534.5 gi|118431925|ref|NP_148697.2| - 7.9e-06 25.4 0.0 2.2e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|118431925|ref|NP_148697.2| - 1.3e-05 25.3 0.0 2.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain SCO1-SenC PF02630.9 gi|118431925|ref|NP_148697.2| - 7.8e-05 22.3 0.0 0.00075 19.1 0.0 2.0 1 1 0 1 1 1 1 SCO1/SenC Glutaredoxin PF00462.19 gi|118431925|ref|NP_148697.2| - 0.041 13.8 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_9 PF14595.1 gi|118431925|ref|NP_148697.2| - 0.063 12.8 0.0 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 Thioredoxin GSHPx PF00255.14 gi|118431925|ref|NP_148697.2| - 0.092 12.1 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Glutathione peroxidase TraF PF13728.1 gi|118431925|ref|NP_148697.2| - 0.12 11.8 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_4 PF13462.1 gi|118431925|ref|NP_148697.2| - 0.12 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin RHH_1 PF01402.16 gi|118431926|ref|NP_148698.2| - 6.2e-07 29.0 0.0 1.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.6 gi|118431926|ref|NP_148698.2| - 3.2e-05 23.7 0.1 0.00015 21.6 0.0 1.8 2 0 0 2 2 2 1 NikR C terminal nickel binding domain DUF2191 PF09957.4 gi|118431926|ref|NP_148698.2| - 0.00019 21.1 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) RHH_2 PF03693.9 gi|118431926|ref|NP_148698.2| - 0.014 15.5 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) E1-E2_ATPase PF00122.15 gi|118431927|ref|NP_148699.2| - 8.1e-39 133.0 1.9 2.9e-38 131.1 1.3 2.0 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|118431927|ref|NP_148699.2| - 3.4e-28 99.5 0.2 8e-28 98.3 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|118431927|ref|NP_148699.2| - 1.7e-13 51.1 0.0 6.5e-13 49.2 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|118431927|ref|NP_148699.2| - 1.7e-10 40.9 0.9 9.8e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase tRNA_anti-codon PF01336.20 gi|118431927|ref|NP_148699.2| - 0.14 12.0 1.4 17 5.3 0.0 2.8 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain DUF4131 PF13567.1 gi|14602152|ref|NP_148700.1| - 0.025 13.9 6.8 0.01 15.2 0.9 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF3088 PF11287.3 gi|14602152|ref|NP_148700.1| - 0.1 12.0 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3088) Aminotran_1_2 PF00155.16 gi|14602153|ref|NP_148701.1| - 4.2e-37 127.9 0.0 5.4e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|14602153|ref|NP_148701.1| - 0.0003 19.6 0.0 0.00052 18.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|14602153|ref|NP_148701.1| - 0.00054 19.1 0.0 0.00081 18.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.8 gi|14602153|ref|NP_148701.1| - 0.005 15.5 0.0 0.015 14.0 0.0 1.6 1 1 0 1 1 1 1 Allinase Radical_SAM PF04055.16 gi|118431928|ref|NP_148702.2| - 1.5e-12 48.0 0.0 4.5e-12 46.4 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|118431928|ref|NP_148702.2| - 0.15 12.1 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain ABC2_membrane PF01061.19 gi|14602155|ref|NP_148703.1| - 1.9e-30 105.6 24.3 1.9e-30 105.6 16.9 2.1 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|14602155|ref|NP_148703.1| - 2.7e-20 72.6 22.0 2.7e-20 72.6 15.2 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|14602155|ref|NP_148703.1| - 2.2e-09 36.8 22.4 2.8e-09 36.4 15.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|14602155|ref|NP_148703.1| - 7.7e-07 28.2 20.3 1e-06 27.8 14.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|118431929|ref|NP_148704.2| - 2.2e-29 102.5 0.0 3.2e-29 101.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|118431929|ref|NP_148704.2| - 5e-15 56.2 0.1 1e-09 38.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|118431929|ref|NP_148704.2| - 4.5e-05 22.9 0.0 8.3e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|118431929|ref|NP_148704.2| - 0.00086 19.7 0.0 0.0014 19.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|118431929|ref|NP_148704.2| - 0.00091 19.6 0.0 0.0015 18.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|118431929|ref|NP_148704.2| - 0.0018 17.4 0.0 0.091 11.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|118431929|ref|NP_148704.2| - 0.0028 17.6 0.1 0.0075 16.2 0.0 1.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|118431929|ref|NP_148704.2| - 0.0043 17.2 0.1 0.059 13.5 0.1 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|118431929|ref|NP_148704.2| - 0.0065 16.4 0.1 0.039 13.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|118431929|ref|NP_148704.2| - 0.012 15.7 0.1 0.12 12.5 0.1 2.4 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.14 gi|118431929|ref|NP_148704.2| - 0.027 13.6 0.0 5.8 6.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|118431929|ref|NP_148704.2| - 0.032 12.9 0.0 0.043 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein KdpD PF02702.12 gi|118431929|ref|NP_148704.2| - 0.035 13.2 0.0 0.064 12.3 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain SRP54 PF00448.17 gi|118431929|ref|NP_148704.2| - 0.039 13.4 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|118431929|ref|NP_148704.2| - 0.043 13.5 0.0 0.14 11.9 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain HTH_11 PF08279.7 gi|118431929|ref|NP_148704.2| - 0.044 13.4 0.1 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain AAA_25 PF13481.1 gi|118431929|ref|NP_148704.2| - 0.046 13.1 0.3 0.23 10.8 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|118431929|ref|NP_148704.2| - 0.055 13.1 0.4 3.3 7.4 0.0 3.2 4 0 0 4 4 4 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|118431929|ref|NP_148704.2| - 0.056 13.0 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|118431929|ref|NP_148704.2| - 0.082 12.0 0.0 0.33 10.0 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|118431929|ref|NP_148704.2| - 0.11 12.4 0.0 0.38 10.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Thymidylate_kin PF02223.12 gi|118431929|ref|NP_148704.2| - 0.11 11.8 0.0 1 8.7 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase IstB_IS21 PF01695.12 gi|118431929|ref|NP_148704.2| - 0.12 11.7 0.1 7.3 5.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Flavin_Reduct PF01613.13 gi|14602157|ref|NP_148705.1| - 2.8e-23 82.4 0.0 4.2e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain BPL_LplA_LipB PF03099.14 gi|14602158|ref|NP_148706.1| - 0.00085 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family SDF PF00375.13 gi|118431930|ref|NP_148707.2| - 6.4e-131 436.6 35.3 7.3e-131 436.5 24.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Lactamase_B PF00753.22 gi|14602160|ref|NP_148708.1| - 4.4e-24 85.2 4.0 6.2e-24 84.7 2.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|14602160|ref|NP_148708.1| - 0.028 13.9 0.0 0.048 13.2 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain BPD_transp_2 PF02653.11 gi|118431931|ref|NP_148709.2| - 5.8e-35 120.5 36.4 7.3e-35 120.2 25.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|118431932|ref|NP_148710.2| - 3.6e-44 150.7 23.7 3.6e-44 150.7 16.5 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|14602163|ref|NP_148711.1| - 1.3e-44 151.8 0.0 2.2e-30 105.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|14602163|ref|NP_148711.1| - 3.4e-07 30.5 0.0 0.0039 17.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|14602163|ref|NP_148711.1| - 0.00061 19.2 0.0 0.012 15.1 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|14602163|ref|NP_148711.1| - 0.0014 17.8 0.0 0.0066 15.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|14602163|ref|NP_148711.1| - 0.002 16.7 1.5 0.25 9.9 0.1 3.6 3 1 0 3 3 3 1 Predicted ATPase of the ABC class UPF0079 PF02367.12 gi|14602163|ref|NP_148711.1| - 0.0034 17.0 0.2 0.024 14.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|14602163|ref|NP_148711.1| - 0.0076 16.3 0.2 0.21 11.7 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|14602163|ref|NP_148711.1| - 0.011 16.0 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|14602163|ref|NP_148711.1| - 0.012 15.5 0.1 0.23 11.4 0.0 2.6 2 1 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|14602163|ref|NP_148711.1| - 0.071 12.5 0.3 6.9 6.0 0.0 3.0 3 0 0 3 3 3 0 AAA-like domain AAA_15 PF13175.1 gi|14602163|ref|NP_148711.1| - 0.1 11.5 0.0 0.39 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF3584 PF12128.3 gi|14602163|ref|NP_148711.1| - 0.12 9.7 0.1 0.16 9.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NACHT PF05729.7 gi|14602163|ref|NP_148711.1| - 0.12 12.0 0.1 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.1 gi|14602163|ref|NP_148711.1| - 0.31 9.4 0.0 0.42 9.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain Bmp PF02608.9 gi|118431933|ref|NP_148712.2| - 1e-75 254.3 0.1 1.3e-75 254.0 0.1 1.2 1 0 0 1 1 1 1 Basic membrane protein TPP_enzyme_N PF02776.13 gi|118431933|ref|NP_148712.2| - 0.054 12.9 0.1 0.75 9.2 0.0 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TusA PF01206.12 gi|118431934|ref|YP_874950.1| - 2.9e-06 26.7 0.0 3.4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Rhodanese PF00581.15 gi|118431935|ref|NP_148714.2| - 6.1e-46 155.4 0.0 1.8e-26 92.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Radical_SAM PF04055.16 gi|14602168|ref|NP_148716.1| - 7.6e-16 58.7 2.0 1.1e-15 58.2 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|14602168|ref|NP_148716.1| - 6.3e-08 32.6 0.0 1.7e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|14602168|ref|NP_148716.1| - 4.8e-05 23.4 0.0 0.00011 22.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1967 PF09269.6 gi|118431936|ref|YP_874951.1| - 0.13 11.8 0.0 0.33 10.6 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1967) Amidinotransf PF02274.12 gi|118431937|ref|NP_148717.2| - 8.6e-46 156.2 0.0 1e-45 156.0 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase AMP-binding PF00501.23 gi|118431938|ref|NP_148719.2| - 1.7e-70 237.4 0.0 2.1e-70 237.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|118431938|ref|NP_148719.2| - 2.4e-25 89.2 0.4 5.5e-25 88.1 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TFX_C PF14601.1 gi|118431938|ref|NP_148719.2| - 0.051 13.3 0.0 0.32 10.8 0.0 2.3 3 0 0 3 3 3 0 DNA_binding protein, TFX, C-term AMP-binding PF00501.23 gi|118431939|ref|YP_874952.1| - 4.4e-12 45.1 0.0 5.6e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Fer4_11 PF13247.1 gi|118431940|ref|NP_148720.2| - 2.5e-30 104.2 17.5 3.2e-30 103.9 6.8 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|118431940|ref|NP_148720.2| - 1e-16 61.0 32.5 9.8e-10 38.6 5.3 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|118431940|ref|NP_148720.2| - 1.9e-13 49.6 46.8 7.2e-07 28.8 1.8 5.2 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|118431940|ref|NP_148720.2| - 6.7e-13 48.6 34.1 2.5e-09 37.2 6.9 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|118431940|ref|NP_148720.2| - 2.7e-12 46.2 30.7 4.9e-09 35.8 3.4 3.4 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|118431940|ref|NP_148720.2| - 5.1e-12 44.8 48.9 2.8e-08 33.0 2.1 6.1 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|118431940|ref|NP_148720.2| - 4e-11 42.1 44.6 2.9e-06 26.8 1.4 5.3 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|118431940|ref|NP_148720.2| - 7.2e-11 41.8 50.1 0.00024 21.4 1.9 4.6 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|118431940|ref|NP_148720.2| - 1.5e-05 25.2 24.1 0.18 12.1 1.3 4.6 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|118431940|ref|NP_148720.2| - 5.7e-05 23.0 33.6 0.0011 18.9 6.8 4.1 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|118431940|ref|NP_148720.2| - 0.0002 21.7 27.0 0.012 16.0 1.2 4.5 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|118431940|ref|NP_148720.2| - 0.00034 20.3 32.3 0.0014 18.4 6.1 3.8 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|118431940|ref|NP_148720.2| - 0.0023 18.6 33.8 0.27 12.0 2.4 4.7 4 2 2 6 6 5 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|118431940|ref|NP_148720.2| - 0.0023 18.0 14.8 0.0074 16.5 1.8 5.1 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|118431940|ref|NP_148720.2| - 0.007 16.9 28.4 0.13 12.8 7.6 4.3 3 1 0 3 3 3 2 4Fe-4S single cluster domain NrfD PF03916.9 gi|14602172|ref|NP_148721.1| - 3.4e-72 243.5 20.7 5.2e-72 242.9 14.4 1.2 1 0 0 1 1 1 1 Polysulphide reductase, NrfD 7tm_1 PF00001.16 gi|14602172|ref|NP_148721.1| - 0.0022 17.1 0.0 0.0044 16.1 0.0 1.5 1 0 0 1 1 1 1 7 transmembrane receptor (rhodopsin family) PIRT PF15099.1 gi|14602172|ref|NP_148721.1| - 0.16 11.1 0.5 0.44 9.7 0.4 1.7 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family Molybdopterin PF00384.17 gi|14602175|ref|NP_148724.1| - 1.1e-16 60.6 0.1 5.6e-13 48.4 0.0 2.3 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|14602175|ref|NP_148724.1| - 2.5e-15 56.2 0.0 8.3e-15 54.5 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|14602175|ref|NP_148724.1| - 1.2e-05 24.9 0.1 0.0021 17.8 0.1 2.4 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|14602175|ref|NP_148724.1| - 0.02 14.8 0.1 0.044 13.7 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CDC48_N PF02359.13 gi|14602175|ref|NP_148724.1| - 0.032 14.1 0.0 0.084 12.8 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Nitrate_red_del PF02613.10 gi|118431941|ref|NP_148725.2| - 5.3e-05 23.0 0.2 0.00011 21.9 0.0 1.6 2 0 0 2 2 2 1 Nitrate reductase delta subunit MFS_1 PF07690.11 gi|118431942|ref|NP_148727.2| - 7.5e-17 61.0 46.6 7.5e-17 61.0 32.3 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily PIN PF01850.16 gi|14602179|ref|NP_148728.1| - 5.6e-15 55.7 0.8 6.5e-15 55.5 0.6 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|14602179|ref|NP_148728.1| - 0.012 15.6 0.1 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 PIN domain DUF4411 PF14367.1 gi|14602179|ref|NP_148728.1| - 0.015 15.0 0.2 0.031 13.9 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) DUF104 PF01954.11 gi|118431943|ref|YP_874953.1| - 5.2e-16 58.4 3.2 5.9e-16 58.2 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN_3 PF13470.1 gi|118431944|ref|NP_148729.2| - 1e-10 42.3 0.3 1.2e-10 42.0 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|118431944|ref|NP_148729.2| - 2.1e-10 40.9 1.3 2.8e-10 40.5 0.9 1.2 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|118431944|ref|NP_148729.2| - 6.4e-05 23.0 0.7 7.8e-05 22.7 0.5 1.1 1 0 0 1 1 1 1 PIN domain Cnl2_NKP2 PF09447.5 gi|118431944|ref|NP_148729.2| - 0.064 12.9 0.1 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 Cnl2/NKP2 family protein Antitoxin-MazE PF04014.13 gi|118431945|ref|YP_874954.1| - 1.3e-07 31.1 1.9 1.3e-07 31.1 1.3 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|118431945|ref|YP_874954.1| - 1.3e-06 28.0 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 MraZ protein AbrB-like PF14250.1 gi|118431945|ref|YP_874954.1| - 0.027 14.3 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 AbrB-like transcriptional regulator SH3_1 PF00018.23 gi|118431945|ref|YP_874954.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 SH3 domain PIN PF01850.16 gi|118431946|ref|YP_874955.1| - 1.5e-12 47.9 0.0 1.5e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|118431947|ref|YP_874956.1| - 3.7e-20 71.7 3.9 4.1e-20 71.5 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Mut7-C PF01927.11 gi|14602181|ref|NP_148732.1| - 5.5e-05 23.1 0.0 6.1e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain XPG_I_2 PF12813.2 gi|14602181|ref|NP_148732.1| - 0.0081 15.6 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 XPG domain containing DUF496 PF04363.7 gi|14602181|ref|NP_148732.1| - 0.1 12.4 0.5 0.13 12.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF496) DUF433 PF04255.9 gi|118431948|ref|NP_148733.2| - 7.8e-19 66.8 0.1 9.5e-19 66.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Sigma70_r4 PF04545.11 gi|118431948|ref|NP_148733.2| - 0.0044 16.2 0.0 0.0061 15.8 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|118431948|ref|NP_148733.2| - 0.013 15.1 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r3 PF04539.11 gi|118431948|ref|NP_148733.2| - 0.038 13.8 0.1 0.1 12.5 0.0 1.7 1 1 1 2 2 2 0 Sigma-70 region 3 HTH_28 PF13518.1 gi|118431948|ref|NP_148733.2| - 0.05 13.6 0.1 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|118431948|ref|NP_148733.2| - 0.11 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like PqqD PF05402.7 gi|118431948|ref|NP_148733.2| - 0.12 12.4 0.9 3.5 7.7 0.2 2.0 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD)