# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4191 PF13829.6 gi|14600380|ref|NP_146894.1| - 4.2 6.6 11.8 6.7 6.0 0.9 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) PadR PF03551.14 gi|14600381|ref|NP_146895.1| - 7.6e-23 80.3 0.2 9.4e-23 80.0 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|14600381|ref|NP_146895.1| - 0.00069 19.7 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|14600381|ref|NP_146895.1| - 0.003 17.4 0.1 0.0056 16.5 0.1 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix RTP PF02334.16 gi|14600381|ref|NP_146895.1| - 0.0032 18.1 0.0 0.0043 17.7 0.0 1.3 1 0 0 1 1 1 1 Replication terminator protein TrmB PF01978.19 gi|14600381|ref|NP_146895.1| - 0.015 15.1 0.0 0.03 14.2 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.12 gi|14600381|ref|NP_146895.1| - 0.057 11.8 0.0 0.068 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Cdc6_C PF09079.11 gi|14600381|ref|NP_146895.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain CPBP PF02517.16 gi|14600382|ref|NP_146896.1| - 2.3e-12 47.1 2.6 2.3e-12 47.1 2.6 2.7 2 1 1 3 3 3 1 CPBP intramembrane metalloprotease ECF_trnsprt PF12822.7 gi|118430836|ref|NP_146897.2| - 0.0043 17.2 1.1 0.0051 16.9 1.1 1.2 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DUF808 PF05661.12 gi|118430836|ref|NP_146897.2| - 0.02 13.9 1.2 0.024 13.7 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF808) DUF4293 PF14126.6 gi|118430836|ref|NP_146897.2| - 0.031 14.5 1.6 0.043 14.1 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF3377 PF11857.8 gi|118430836|ref|NP_146897.2| - 0.19 11.7 3.7 0.53 10.2 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3377) PQQ PF01011.21 gi|118430837|ref|NP_146898.2| - 0.0016 18.3 1.8 0.42 10.6 0.1 4.0 4 1 1 5 5 5 2 PQQ enzyme repeat PQQ_2 PF13360.6 gi|118430837|ref|NP_146898.2| - 0.025 14.1 0.1 0.071 12.7 0.1 1.8 1 1 0 1 1 1 0 PQQ-like domain HMA PF00403.26 gi|118430838|ref|NP_146899.2| - 3.5e-12 46.6 0.1 5.1e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain PMSR PF01625.21 gi|118430838|ref|NP_146899.2| - 0.0038 17.4 0.1 0.21 11.7 0.0 2.2 1 1 1 2 2 2 2 Peptide methionine sulfoxide reductase AA_permease_2 PF13520.6 gi|118430839|ref|NP_146900.2| - 7.1e-29 100.9 39.7 9.1e-29 100.5 39.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|118430839|ref|NP_146900.2| - 3.1e-23 82.1 39.3 5.3e-23 81.3 39.0 1.5 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|118430839|ref|NP_146900.2| - 3.9e-08 32.5 12.4 7.8e-08 31.5 12.4 1.5 1 0 0 1 1 1 1 Spore germination protein NTP_transf_2 PF01909.23 gi|118430839|ref|NP_146900.2| - 4.2e-08 33.4 0.0 8.1e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|118430839|ref|NP_146900.2| - 0.0024 18.0 0.0 0.0054 16.9 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase beta palm Polbeta PF18765.1 gi|118430839|ref|NP_146900.2| - 0.0026 17.8 0.0 0.0076 16.3 0.0 1.8 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase Polysacc_deac_1 PF01522.21 gi|118430839|ref|NP_146900.2| - 0.22 11.4 0.0 0.43 10.5 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase DeoC PF01791.9 gi|118430840|ref|NP_146901.2| - 2.8e-36 125.3 0.0 3.3e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.14 gi|118430840|ref|NP_146901.2| - 2.6e-05 23.7 0.3 0.00023 20.6 0.3 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Peptidase_C26 PF07722.13 gi|118430840|ref|NP_146901.2| - 0.0006 19.6 0.0 1.1 8.9 0.0 2.1 2 0 0 2 2 2 2 Peptidase C26 GDPD_2 PF13653.6 gi|118430840|ref|NP_146901.2| - 0.031 14.7 0.0 0.11 13.0 0.0 1.9 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family DAGK_cat PF00781.24 gi|118430840|ref|NP_146901.2| - 0.07 12.8 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PfkB PF00294.24 gi|14600388|ref|NP_146902.1| - 1.3e-60 205.3 0.1 1.7e-60 204.9 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|14600388|ref|NP_146902.1| - 1.5e-08 34.4 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF4853 PF16145.5 gi|14600388|ref|NP_146902.1| - 0.14 12.3 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4853) ILVD_EDD PF00920.21 gi|118430841|ref|NP_146903.2| - 3.4e-197 656.2 0.0 3.8e-197 656.0 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family FGGY_N PF00370.21 gi|118430842|ref|NP_146905.2| - 4.9e-39 134.4 0.0 1.4e-38 132.9 0.0 1.7 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|118430842|ref|NP_146905.2| - 6.4e-26 91.3 0.2 1.1e-25 90.5 0.2 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|118430842|ref|NP_146905.2| - 0.024 14.2 0.1 2.1 7.8 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Raco_middle PF17651.1 gi|118430842|ref|NP_146905.2| - 0.037 13.7 0.3 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 RACo middle region Pyridoxal_deC PF00282.19 gi|118430843|ref|NP_146906.2| - 3.7e-28 98.3 0.0 5.5e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|118430843|ref|NP_146906.2| - 4.2e-09 35.8 0.0 2.1e-08 33.5 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|118430843|ref|NP_146906.2| - 3.6e-07 29.8 0.1 5.2e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|118430843|ref|NP_146906.2| - 2.3e-06 27.1 0.0 1.5e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Acid_PPase PF12689.7 gi|118430844|ref|NP_146907.2| - 2.3e-06 27.6 0.0 4.6e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 Acid Phosphatase TrmB PF01978.19 gi|118430846|ref|NP_146909.2| - 1.7e-27 95.1 0.1 2.4e-27 94.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|118430846|ref|NP_146909.2| - 4.3e-05 23.3 0.0 7.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|118430846|ref|NP_146909.2| - 0.00024 20.8 0.0 0.00042 20.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|118430846|ref|NP_146909.2| - 0.014 15.0 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|118430846|ref|NP_146909.2| - 0.029 14.3 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|118430846|ref|NP_146909.2| - 0.14 12.5 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PPDK_N PF01326.19 gi|14600396|ref|NP_146910.1| - 1.1e-85 287.8 0.0 3.2e-83 279.7 0.0 2.2 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|14600397|ref|NP_146911.1| - 1e-24 86.0 0.1 1.7e-24 85.4 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|14600397|ref|NP_146911.1| - 0.16 12.1 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal MFS_1 PF07690.16 gi|118430847|ref|NP_146912.2| - 5.1e-59 200.0 64.1 9.6e-49 166.2 40.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2370 PF10176.9 gi|118430847|ref|NP_146912.2| - 0.071 12.7 0.4 0.15 11.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) MFS_2 PF13347.6 gi|118430847|ref|NP_146912.2| - 0.52 8.8 38.9 0.0088 14.6 16.9 3.2 2 1 1 3 3 3 0 MFS/sugar transport protein PEPCK_ATP PF01293.20 gi|118430848|ref|NP_146913.2| - 1.5e-40 139.3 0.0 1.2e-39 136.3 0.0 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.6 gi|118430848|ref|NP_146913.2| - 0.0084 16.3 0.0 0.015 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain SBP_bac_1 PF01547.25 gi|118430849|ref|NP_146914.2| - 2.1e-32 113.3 8.1 2.9e-32 112.9 8.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|118430849|ref|NP_146914.2| - 2.2e-23 83.5 2.0 3e-23 83.0 2.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|118430849|ref|NP_146914.2| - 0.0003 20.6 0.0 0.012 15.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DivIC PF04977.15 gi|118430849|ref|NP_146914.2| - 0.02 14.6 0.2 0.046 13.5 0.2 1.5 1 0 0 1 1 1 0 Septum formation initiator AI-2E_transport PF01594.16 gi|118430849|ref|NP_146914.2| - 0.033 13.3 0.1 0.048 12.8 0.1 1.2 1 0 0 1 1 1 0 AI-2E family transporter FlaC_arch PF05377.11 gi|118430849|ref|NP_146914.2| - 0.08 13.3 2.1 0.2 12.1 2.1 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|118430849|ref|NP_146914.2| - 0.15 12.1 0.9 0.33 11.0 0.9 1.5 1 0 0 1 1 1 0 Laminin Domain II COG2 PF06148.11 gi|118430849|ref|NP_146914.2| - 0.24 11.5 0.6 0.46 10.6 0.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 BPD_transp_1 PF00528.22 gi|118430850|ref|NP_146915.2| - 1.2e-20 74.0 20.5 1.2e-20 74.0 20.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|118430851|ref|NP_146916.2| - 6e-21 75.0 17.5 6e-21 75.0 17.5 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|118430852|ref|NP_146917.2| - 3.1e-34 118.4 0.0 4.5e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|118430852|ref|NP_146917.2| - 7.7e-14 51.7 0.0 2.5e-13 50.1 0.0 2.0 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.10 gi|118430852|ref|NP_146917.2| - 7.1e-11 42.1 0.0 3.3e-10 40.0 0.0 2.2 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|118430852|ref|NP_146917.2| - 7.6e-07 29.9 0.0 3.8e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|118430852|ref|NP_146917.2| - 1.6e-05 24.9 0.0 0.029 14.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118430852|ref|NP_146917.2| - 0.00065 19.2 0.0 0.0032 16.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|118430852|ref|NP_146917.2| - 0.0029 17.9 0.0 0.0065 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118430852|ref|NP_146917.2| - 0.004 17.5 0.1 0.0071 16.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|118430852|ref|NP_146917.2| - 0.0046 17.0 0.0 0.0088 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|118430852|ref|NP_146917.2| - 0.0067 16.4 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|118430852|ref|NP_146917.2| - 0.0079 16.6 0.0 0.018 15.5 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|118430852|ref|NP_146917.2| - 0.019 15.5 0.3 0.036 14.6 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|118430852|ref|NP_146917.2| - 0.045 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|118430852|ref|NP_146917.2| - 0.09 12.7 0.1 0.23 11.4 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|118430852|ref|NP_146917.2| - 0.17 11.6 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PBP_like_2 PF12849.7 gi|14600404|ref|NP_146918.1| - 6.8e-52 176.9 1.1 9e-52 176.5 1.1 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|14600404|ref|NP_146918.1| - 1.6e-13 51.3 8.2 2.5e-13 50.6 8.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|14600404|ref|NP_146918.1| - 8.6e-07 28.3 0.0 5.1e-06 25.7 0.0 2.2 2 1 0 2 2 2 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|118430853|ref|NP_146919.2| - 7.2e-13 48.7 15.7 7.2e-13 48.7 15.7 2.5 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|14600406|ref|NP_146920.1| - 8e-16 58.3 12.0 8e-16 58.3 12.0 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|14600407|ref|NP_146921.1| - 6.4e-36 123.9 0.0 8.7e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14600407|ref|NP_146921.1| - 2.2e-10 40.9 0.1 0.00015 21.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|14600407|ref|NP_146921.1| - 8.4e-08 31.9 0.0 0.0011 18.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|14600407|ref|NP_146921.1| - 3.9e-05 23.3 0.1 7.1e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|14600407|ref|NP_146921.1| - 9.4e-05 21.7 0.0 0.00011 21.4 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain RsgA_GTPase PF03193.16 gi|14600407|ref|NP_146921.1| - 0.00021 21.2 0.1 0.0013 18.6 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|14600407|ref|NP_146921.1| - 0.00057 19.9 0.0 0.0021 18.0 0.0 1.8 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|14600407|ref|NP_146921.1| - 0.0013 18.5 0.1 0.014 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|14600407|ref|NP_146921.1| - 0.0027 18.2 0.1 0.0052 17.3 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|14600407|ref|NP_146921.1| - 0.0033 18.0 0.0 0.0071 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|14600407|ref|NP_146921.1| - 0.0037 17.5 0.2 0.011 16.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|14600407|ref|NP_146921.1| - 0.0043 16.8 0.0 0.36 10.5 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|14600407|ref|NP_146921.1| - 0.0074 16.7 0.1 0.024 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|14600407|ref|NP_146921.1| - 0.02 13.7 0.1 0.031 13.1 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_33 PF13671.6 gi|14600407|ref|NP_146921.1| - 0.02 15.1 0.0 0.03 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|14600407|ref|NP_146921.1| - 0.024 13.4 0.1 0.71 8.6 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|14600407|ref|NP_146921.1| - 0.031 14.7 0.0 0.7 10.3 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|14600407|ref|NP_146921.1| - 0.048 13.6 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea PRK PF00485.18 gi|14600407|ref|NP_146921.1| - 0.07 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.6 gi|14600407|ref|NP_146921.1| - 0.079 13.3 0.7 1.7 9.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|14600407|ref|NP_146921.1| - 0.095 12.8 0.2 0.21 11.6 0.1 1.6 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|14600407|ref|NP_146921.1| - 0.11 12.1 0.1 0.42 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|14600407|ref|NP_146921.1| - 0.12 12.0 0.1 0.26 10.8 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_PrkA PF08298.11 gi|14600407|ref|NP_146921.1| - 0.13 11.2 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Cytidylate_kin PF02224.18 gi|14600407|ref|NP_146921.1| - 0.14 11.8 0.1 0.3 10.8 0.0 1.5 2 0 0 2 2 2 0 Cytidylate kinase DUF3987 PF13148.6 gi|14600407|ref|NP_146921.1| - 0.15 11.1 0.1 0.32 10.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MMR_HSR1 PF01926.23 gi|14600407|ref|NP_146921.1| - 0.16 12.1 0.2 0.49 10.5 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|14600407|ref|NP_146921.1| - 0.16 11.7 0.1 0.44 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain PhoU PF01895.19 gi|14600408|ref|NP_146922.1| - 1.3e-26 92.9 11.4 7.8e-16 58.3 5.0 2.1 2 0 0 2 2 2 2 PhoU domain PMC2NT PF08066.12 gi|14600408|ref|NP_146922.1| - 0.084 13.6 0.3 0.26 12.0 0.1 1.9 2 0 0 2 2 2 0 PMC2NT (NUC016) domain DUF4148 PF13663.6 gi|118430854|ref|NP_146923.2| - 0.16 12.2 0.8 0.31 11.3 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) PsbN PF02468.15 gi|118430854|ref|NP_146923.2| - 0.55 10.1 3.4 1.2 9.1 3.4 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) FAA_hydrolase PF01557.18 gi|118430855|ref|NP_146924.2| - 6.9e-58 195.9 0.0 8.6e-58 195.6 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family CitMHS PF03600.16 gi|14600412|ref|NP_146926.1| - 6.4e-33 114.2 28.5 6.4e-33 114.2 28.5 1.6 1 1 0 1 1 1 1 Citrate transporter DctM PF06808.12 gi|14600412|ref|NP_146926.1| - 5.4 5.7 29.7 0.15 10.9 11.2 2.5 2 1 0 2 2 2 0 Tripartite ATP-independent periplasmic transporter, DctM component ECH_1 PF00378.20 gi|118430857|ref|NP_146927.2| - 6.1e-45 153.5 0.0 6.9e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|118430857|ref|NP_146927.2| - 3.4e-33 115.5 0.0 4e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase AP3B1_C PF14796.6 gi|118430858|ref|NP_146928.2| - 0.13 12.5 2.4 4.7 7.5 0.0 3.1 2 0 0 2 2 2 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal Pribosyltran PF00156.27 gi|118430859|ref|NP_146931.2| - 2e-08 33.9 0.1 3.4e-08 33.2 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_31 PF13560.6 gi|118430859|ref|NP_146931.2| - 9.2e-06 25.9 2.7 3.2e-05 24.2 2.7 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|118430859|ref|NP_146931.2| - 7.2e-05 22.8 0.1 0.00014 21.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|118430859|ref|NP_146931.2| - 0.0098 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PRTase_2 PF15609.6 gi|118430859|ref|NP_146931.2| - 0.01 15.3 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_26 PF13443.6 gi|118430859|ref|NP_146931.2| - 0.032 14.7 0.0 0.064 13.7 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain UPRTase PF14681.6 gi|118430859|ref|NP_146931.2| - 0.038 13.4 0.1 0.09 12.2 0.0 1.7 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase RepB PF07506.11 gi|118430859|ref|NP_146931.2| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_24 PF13412.6 gi|118430859|ref|NP_146931.2| - 0.14 11.7 0.4 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Bmp PF02608.14 gi|118430860|ref|NP_146932.2| - 1e-18 67.3 0.0 1.9e-18 66.5 0.0 1.3 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|118430860|ref|NP_146932.2| - 6.7e-07 28.9 3.4 6.7e-07 28.9 3.4 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|118430860|ref|NP_146932.2| - 0.091 12.1 0.3 0.19 11.1 0.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ABC_tran PF00005.27 gi|14600419|ref|NP_146933.1| - 2.9e-40 137.9 0.0 1.4e-21 77.5 0.0 2.8 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 gi|14600419|ref|NP_146933.1| - 1.2e-09 38.4 0.0 2.4e-05 24.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|14600419|ref|NP_146933.1| - 1.5e-05 24.7 0.2 8.1e-05 22.3 0.1 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|14600419|ref|NP_146933.1| - 0.00037 21.1 0.0 0.00056 20.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain DLIC PF05783.11 gi|14600419|ref|NP_146933.1| - 0.00079 18.4 0.1 0.0013 17.7 0.1 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) FeoA PF04023.14 gi|14600419|ref|NP_146933.1| - 0.0017 18.6 0.9 0.0064 16.7 0.1 2.3 2 1 0 2 2 2 1 FeoA domain SMC_N PF02463.19 gi|14600419|ref|NP_146933.1| - 0.0021 17.6 0.0 0.093 12.2 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|14600419|ref|NP_146933.1| - 0.0056 16.3 2.2 0.38 10.3 0.2 2.9 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|14600419|ref|NP_146933.1| - 0.013 15.2 0.0 0.094 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|14600419|ref|NP_146933.1| - 0.021 14.7 0.3 0.06 13.3 0.3 1.8 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|14600419|ref|NP_146933.1| - 0.024 14.8 0.0 0.076 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|14600419|ref|NP_146933.1| - 0.028 14.8 0.6 0.064 13.6 0.3 1.9 2 1 0 2 2 1 0 AAA ATPase domain DUF3253 PF11625.8 gi|14600419|ref|NP_146933.1| - 0.046 14.0 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) MukB PF04310.12 gi|14600419|ref|NP_146933.1| - 0.058 13.2 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal Zeta_toxin PF06414.12 gi|14600419|ref|NP_146933.1| - 0.088 12.1 0.2 0.19 11.0 0.1 1.5 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 gi|14600419|ref|NP_146933.1| - 0.1 12.5 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|14600419|ref|NP_146933.1| - 0.15 12.5 0.0 0.67 10.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|14600419|ref|NP_146933.1| - 0.15 10.8 1.1 0.59 8.9 0.6 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|14600419|ref|NP_146933.1| - 0.19 11.3 0.2 0.38 10.3 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|14600419|ref|NP_146933.1| - 0.2 11.7 0.2 0.39 10.7 0.2 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|14600419|ref|NP_146933.1| - 0.86 9.3 6.3 0.2 11.4 0.4 2.7 4 0 0 4 4 4 0 AAA domain BPD_transp_2 PF02653.16 gi|14600420|ref|NP_146934.1| - 1.7e-18 66.8 37.7 1.7e-18 66.8 37.7 1.8 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|118430861|ref|NP_146935.2| - 1.1e-34 119.8 40.0 1.8e-34 119.1 40.0 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Nitro_FeMo-Co PF02579.17 gi|118430862|ref|YP_874799.1| - 6.2e-07 29.7 0.0 2.7e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor dUTPase PF00692.19 gi|118430863|ref|NP_146937.2| - 3.6e-10 39.6 0.0 5.3e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 dUTPase Oxidored_molyb PF00174.19 gi|118430865|ref|NP_146939.2| - 3.2e-32 111.5 0.0 4.2e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_C_asm PF01578.20 gi|14600426|ref|NP_146940.1| - 2.4e-19 69.9 4.9 2.4e-19 69.9 4.9 2.0 2 1 0 2 2 2 1 Cytochrome C assembly protein DUF2339 PF10101.9 gi|14600426|ref|NP_146940.1| - 0.0035 16.0 15.9 0.12 11.0 4.6 2.2 1 1 1 2 2 2 2 Predicted membrane protein (DUF2339) PGF-CTERM PF18204.1 gi|14600426|ref|NP_146940.1| - 0.017 15.1 7.1 0.018 15.0 0.1 3.2 2 0 0 2 2 2 0 PGF-CTERM motif DUF1282 PF06930.12 gi|14600426|ref|NP_146940.1| - 0.69 9.7 7.9 0.23 11.2 3.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1282) UPF0020 PF01170.18 gi|118430866|ref|NP_146941.2| - 1.1e-05 25.3 0.0 7.2e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|118430866|ref|NP_146941.2| - 1.2e-05 25.2 0.0 0.00083 19.1 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.15 gi|118430866|ref|NP_146941.2| - 0.0019 17.9 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|118430866|ref|NP_146941.2| - 0.0021 17.8 0.4 0.0037 17.0 0.0 1.5 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase DUF1156 PF06634.12 gi|118430866|ref|NP_146941.2| - 0.088 12.9 0.2 0.2 11.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1156) EamA PF00892.20 gi|118430867|ref|NP_146944.2| - 7e-33 113.7 36.4 1.5e-16 60.8 12.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family Sugar_transport PF06800.12 gi|118430867|ref|NP_146944.2| - 0.007 15.7 11.4 0.027 13.8 11.3 2.4 1 1 0 1 1 1 1 Sugar transport protein TPT PF03151.16 gi|118430867|ref|NP_146944.2| - 0.14 11.5 6.3 0.43 9.9 1.3 2.3 2 0 0 2 2 2 0 Triose-phosphate Transporter family DUF5510 PF17629.2 gi|118430867|ref|NP_146944.2| - 0.53 10.3 6.2 7.6 6.6 0.3 3.5 3 0 0 3 3 3 0 Family of unknown function (DUF5510) MdcE PF06833.11 gi|118430867|ref|NP_146944.2| - 0.71 9.3 8.1 0.04 13.4 1.2 2.1 2 0 0 2 2 2 0 Malonate decarboxylase gamma subunit (MdcE) DUF2953 PF11167.8 gi|118430867|ref|NP_146944.2| - 2.7 8.1 5.8 17 5.6 0.2 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) MoCF_biosynth PF00994.24 gi|14600431|ref|NP_146945.1| - 1.1e-29 103.0 0.0 1.3e-29 102.7 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain ATP-synt_F PF01990.17 gi|14600431|ref|NP_146945.1| - 0.072 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit Acetate_kinase PF00871.17 gi|14600431|ref|NP_146945.1| - 0.14 10.9 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Acetokinase family DUF4646 PF15496.6 gi|118430868|ref|YP_874800.1| - 0.088 13.4 0.0 0.096 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4646) AdoMet_dc PF02675.15 gi|14600432|ref|NP_146946.1| - 2e-32 111.6 0.0 2.3e-32 111.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase HAS-barrel PF09378.10 gi|118430869|ref|NP_146947.2| - 5.4e-13 48.9 0.2 1.2e-12 47.8 0.2 1.6 1 0 0 1 1 1 1 HAS barrel domain DUF87 PF01935.17 gi|118430869|ref|NP_146947.2| - 8.3e-09 35.9 0.0 2.1e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|118430869|ref|NP_146947.2| - 6.1e-07 29.8 0.0 0.0074 16.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|118430869|ref|NP_146947.2| - 1e-06 28.3 1.3 5e-06 26.1 0.3 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.29 gi|118430869|ref|NP_146947.2| - 1.3e-06 28.9 0.0 0.0029 18.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.12 gi|118430869|ref|NP_146947.2| - 2.5e-06 26.4 0.0 0.033 12.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|118430869|ref|NP_146947.2| - 1.6e-05 24.0 0.0 4.3e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|118430869|ref|NP_146947.2| - 0.00016 21.7 0.1 0.57 10.2 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Zot PF05707.12 gi|118430869|ref|NP_146947.2| - 0.0009 18.9 0.1 0.0024 17.5 0.0 1.7 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SSE PF00437.20 gi|118430869|ref|NP_146947.2| - 0.0035 16.5 0.1 0.0093 15.0 0.1 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|118430869|ref|NP_146947.2| - 0.0035 17.7 0.1 0.095 13.1 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|118430869|ref|NP_146947.2| - 0.0046 16.7 0.1 0.0088 15.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|118430869|ref|NP_146947.2| - 0.0052 17.3 0.0 0.017 15.7 0.0 1.8 2 0 0 2 2 1 1 ABC transporter AAA_10 PF12846.7 gi|118430869|ref|NP_146947.2| - 0.0078 15.2 0.1 0.97 8.3 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.12 gi|118430869|ref|NP_146947.2| - 0.01 15.8 0.0 0.091 12.7 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_7 PF12775.7 gi|118430869|ref|NP_146947.2| - 0.014 14.9 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_21 PF13304.6 gi|118430869|ref|NP_146947.2| - 0.018 14.9 0.1 0.74 9.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_19 PF13245.6 gi|118430869|ref|NP_146947.2| - 0.019 15.3 0.1 0.095 13.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|118430869|ref|NP_146947.2| - 0.026 14.1 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DEAD PF00270.29 gi|118430869|ref|NP_146947.2| - 0.027 14.3 0.0 5.1 6.8 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase MobB PF03205.14 gi|118430869|ref|NP_146947.2| - 0.042 13.7 0.2 0.095 12.6 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|118430869|ref|NP_146947.2| - 0.056 13.4 0.0 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|118430869|ref|NP_146947.2| - 0.061 12.9 0.1 2 7.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|118430869|ref|NP_146947.2| - 0.064 13.4 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|118430869|ref|NP_146947.2| - 0.068 12.9 0.0 0.75 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|118430869|ref|NP_146947.2| - 0.1 11.8 0.1 6.9 5.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|118430869|ref|NP_146947.2| - 0.1 12.6 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|118430869|ref|NP_146947.2| - 0.13 12.8 0.1 0.23 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|118430869|ref|NP_146947.2| - 0.19 11.1 0.0 0.34 10.3 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_18 PF13238.6 gi|118430869|ref|NP_146947.2| - 0.21 12.1 0.0 0.54 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NurA PF09376.10 gi|118430870|ref|NP_146948.2| - 1e-21 77.7 1.5 1.3e-21 77.4 1.5 1.1 1 0 0 1 1 1 1 NurA domain Nitroreductase PF00881.24 gi|118430871|ref|NP_146950.2| - 7.1e-17 62.0 0.2 2.4e-16 60.2 0.2 1.7 1 1 0 1 1 1 1 Nitroreductase family SHS2_FTSA PF02491.20 gi|118430871|ref|NP_146950.2| - 0.064 13.7 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA TM1586_NiRdase PF14512.6 gi|118430871|ref|NP_146950.2| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative TM nitroreductase PHP_C PF13263.6 gi|118430872|ref|NP_146951.2| - 2.6e-14 52.7 0.1 1.4e-13 50.4 0.1 2.3 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|118430872|ref|NP_146951.2| - 9.8e-08 32.5 0.0 1.7e-07 31.7 0.0 1.5 1 1 0 1 1 1 1 PHP domain AhpC-TSA PF00578.21 gi|14600438|ref|NP_146952.1| - 3.8e-39 133.4 0.0 4.5e-39 133.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|14600438|ref|NP_146952.1| - 1.7e-25 89.4 0.0 2.1e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|14600438|ref|NP_146952.1| - 4.5e-05 23.6 0.0 5.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.14 gi|14600438|ref|NP_146952.1| - 0.0025 17.7 0.0 0.0052 16.7 0.0 1.5 1 1 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|14600438|ref|NP_146952.1| - 0.0091 15.6 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) GSHPx PF00255.19 gi|14600438|ref|NP_146952.1| - 0.023 14.3 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase DUF2175 PF09943.9 gi|118430874|ref|NP_146953.2| - 2.5e-31 107.9 0.0 2.8e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Vps39_2 PF10367.9 gi|118430874|ref|NP_146953.2| - 0.038 14.4 0.0 0.13 12.7 0.0 1.7 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 zf-RING_11 PF17123.5 gi|118430874|ref|NP_146953.2| - 0.056 13.2 0.6 0.19 11.5 0.6 1.9 1 1 0 1 1 1 0 RING-like zinc finger MazE_antitoxin PF04014.18 gi|118430875|ref|NP_146954.2| - 2.7e-08 33.5 0.8 6.6e-08 32.3 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PmbA_TldD PF01523.16 gi|118430876|ref|NP_146955.2| - 4.9e-46 157.8 0.8 6.5e-46 157.4 0.8 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|14600442|ref|NP_146956.1| - 3.9e-37 128.6 0.1 5.8e-37 128.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Hist_deacetyl PF00850.19 gi|14602183|ref|NP_146957.1| - 6e-60 203.3 0.0 9.4e-60 202.7 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain MazE_antitoxin PF04014.18 gi|118430877|ref|NP_146958.2| - 1.6e-08 34.2 0.4 4.9e-08 32.7 0.4 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF429 PF04250.13 gi|118430879|ref|NP_146962.2| - 1.3e-07 31.7 0.1 4.3e-07 29.9 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DNA_pol_B PF00136.21 gi|14600448|ref|NP_146963.1| - 1.9e-48 165.3 0.0 4.2e-48 164.2 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|14600448|ref|NP_146963.1| - 2.5e-28 99.2 0.0 4.9e-28 98.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|14600448|ref|NP_146963.1| - 2.7e-06 27.5 0.1 7.4e-05 22.8 0.1 2.4 1 1 0 1 1 1 1 RNase_H superfamily tRNA-synt_1g PF09334.11 gi|14600448|ref|NP_146963.1| - 0.0082 14.9 0.0 0.013 14.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) DNA_pol_B_exo2 PF10108.9 gi|14600448|ref|NP_146963.1| - 0.065 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB GATase_7 PF13537.6 gi|14600448|ref|NP_146963.1| - 0.17 11.8 0.0 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Glutamine amidotransferase domain CCG PF02754.16 gi|118430880|ref|NP_146964.2| - 6.7e-27 93.5 0.0 6.8e-13 48.6 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|118430880|ref|NP_146964.2| - 3.1e-11 43.5 5.0 4e-11 43.2 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|118430880|ref|NP_146964.2| - 8.3e-09 35.4 6.6 8.3e-09 35.4 6.6 2.5 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|118430880|ref|NP_146964.2| - 1e-06 28.8 8.4 1e-06 28.8 8.4 2.6 3 1 1 4 4 3 2 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 gi|118430880|ref|NP_146964.2| - 0.00013 21.6 0.4 0.00024 20.7 0.4 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_2 PF12797.7 gi|118430880|ref|NP_146964.2| - 0.00015 21.6 17.2 0.002 18.1 2.0 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|118430880|ref|NP_146964.2| - 0.00019 21.7 15.5 0.0073 16.7 2.0 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|118430880|ref|NP_146964.2| - 0.00047 20.6 10.9 0.0012 19.3 8.9 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|118430880|ref|NP_146964.2| - 0.0015 18.2 17.8 0.0085 15.9 1.0 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|118430880|ref|NP_146964.2| - 0.0028 18.2 12.8 0.0028 18.2 12.8 2.9 3 1 1 4 4 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|118430880|ref|NP_146964.2| - 0.01 16.0 3.2 0.82 9.9 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain zinc_ribbon_5 PF13719.6 gi|118430880|ref|NP_146964.2| - 0.02 14.6 0.4 1.8 8.4 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_N PF01194.17 gi|118430880|ref|NP_146964.2| - 0.036 14.4 0.0 0.036 14.4 0.0 2.6 3 0 0 3 3 2 0 RNA polymerases N / 8 kDa subunit Fer4_21 PF14697.6 gi|118430880|ref|NP_146964.2| - 0.054 13.6 10.4 0.32 11.2 0.4 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain DUF1772 PF08592.11 gi|118430880|ref|NP_146964.2| - 0.061 13.6 3.9 7.7 6.8 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) Fer4_15 PF13459.6 gi|118430880|ref|NP_146964.2| - 0.064 14.0 2.7 11 6.8 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|118430880|ref|NP_146964.2| - 0.089 13.6 10.4 0.2 12.5 0.2 3.3 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|118430880|ref|NP_146964.2| - 0.15 13.0 14.2 4.2 8.4 14.5 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|118430880|ref|NP_146964.2| - 0.16 12.1 21.7 0.06 13.5 3.5 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Eapp_C PF10238.9 gi|118430880|ref|NP_146964.2| - 3 7.9 4.4 1 9.4 0.0 2.2 3 0 0 3 3 2 0 E2F-associated phosphoprotein HSP20 PF00011.21 gi|118430881|ref|NP_146965.2| - 1.2e-05 25.4 0.0 1.6e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|118430881|ref|NP_146965.2| - 0.0039 16.7 0.4 0.15 11.6 0.1 2.2 1 1 1 2 2 2 2 HSP20-like domain found in ArsA PAC2 PF09754.9 gi|118430882|ref|NP_146966.2| - 1.3e-34 120.0 0.1 1.5e-34 119.8 0.1 1.0 1 0 0 1 1 1 1 PAC2 family SBP_bac_11 PF13531.6 gi|118430882|ref|NP_146966.2| - 0.16 11.6 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Fer4_15 PF13459.6 gi|118430883|ref|NP_146967.2| - 4.9e-17 62.4 1.0 5.5e-17 62.3 1.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|118430883|ref|NP_146967.2| - 5.6e-10 39.6 0.1 7.9e-10 39.1 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|118430883|ref|NP_146967.2| - 0.076 13.1 1.3 0.11 12.6 1.3 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|118430883|ref|NP_146967.2| - 0.22 11.6 2.0 1 9.5 2.1 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster RsgA_GTPase PF03193.16 gi|14600453|ref|NP_146968.1| - 2.6e-12 46.9 0.0 4.3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|14600453|ref|NP_146968.1| - 2.5e-11 43.6 0.0 1.4e-08 34.8 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|14600453|ref|NP_146968.1| - 7.7e-07 29.3 2.0 0.0031 17.6 0.1 3.1 3 0 0 3 3 3 2 Dynamin family FeoB_N PF02421.18 gi|14600453|ref|NP_146968.1| - 0.0011 18.6 0.1 0.42 10.1 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|14600453|ref|NP_146968.1| - 0.0019 17.8 1.1 0.0055 16.3 0.4 1.9 2 1 0 3 3 3 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|14600453|ref|NP_146968.1| - 0.011 15.4 0.3 0.033 13.8 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.17 gi|14600455|ref|NP_146970.1| - 8.1e-49 166.8 0.0 1.3e-48 166.1 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|14600455|ref|NP_146970.1| - 9.6e-11 41.7 0.4 3.1e-10 40.1 0.4 1.9 1 1 0 1 1 1 1 HAS barrel domain DUF853 PF05872.12 gi|14600455|ref|NP_146970.1| - 3.4e-08 32.6 0.1 8.2e-06 24.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|14600455|ref|NP_146970.1| - 0.015 14.3 0.0 1.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|14600455|ref|NP_146970.1| - 0.17 11.2 1.0 9.9 5.4 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family NurA PF09376.10 gi|118430885|ref|NP_146971.2| - 1.6e-45 155.7 0.0 1.9e-45 155.5 0.0 1.0 1 0 0 1 1 1 1 NurA domain SMC_N PF02463.19 gi|14600457|ref|NP_146972.1| - 2.4e-22 79.5 3.3 5.6e-11 42.3 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|14600457|ref|NP_146972.1| - 1.8e-16 60.8 2.1 3.5e-08 33.5 0.1 3.9 2 2 1 3 3 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|14600457|ref|NP_146972.1| - 6e-15 56.3 64.6 4.5e-07 30.6 41.8 5.7 1 1 1 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|14600457|ref|NP_146972.1| - 7.6e-12 44.7 44.9 0.00069 18.4 2.9 5.6 2 1 2 4 4 4 3 AAA domain Rad50_zn_hook PF04423.14 gi|14600457|ref|NP_146972.1| - 8.7e-11 41.5 5.5 1.4e-10 40.9 0.0 4.6 4 0 0 4 4 2 1 Rad50 zinc hook motif AAA_21 PF13304.6 gi|14600457|ref|NP_146972.1| - 2.5e-10 40.6 17.3 2.9e-05 24.0 0.1 3.7 3 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|14600457|ref|NP_146972.1| - 5.9e-08 32.8 0.0 1.2e-06 28.6 0.0 2.6 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|14600457|ref|NP_146972.1| - 4.9e-07 29.4 0.0 8.7e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|14600457|ref|NP_146972.1| - 2.9e-06 27.9 12.5 0.00012 22.7 0.1 5.0 3 2 0 3 3 3 1 ABC transporter AAA_27 PF13514.6 gi|14600457|ref|NP_146972.1| - 0.00085 19.0 0.0 0.00085 19.0 0.0 5.3 6 1 0 6 6 5 1 AAA domain NPV_P10 PF05531.12 gi|14600457|ref|NP_146972.1| - 0.0016 18.9 16.2 1.6 9.2 0.5 7.5 4 3 2 7 7 7 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|14600457|ref|NP_146972.1| - 0.0027 17.8 19.8 2.3 8.3 0.2 6.3 3 2 2 6 6 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|14600457|ref|NP_146972.1| - 0.0075 16.5 43.7 0.93 9.8 6.4 7.7 3 2 3 7 7 7 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 MukB PF04310.12 gi|14600457|ref|NP_146972.1| - 0.0078 16.1 0.4 0.036 13.9 0.0 2.4 2 0 0 2 2 1 1 MukB N-terminal DUF3450 PF11932.8 gi|14600457|ref|NP_146972.1| - 0.0081 15.5 4.2 0.0081 15.5 4.2 6.3 3 2 4 7 7 7 1 Protein of unknown function (DUF3450) FtsK_SpoIIIE PF01580.18 gi|14600457|ref|NP_146972.1| - 0.012 14.9 0.0 0.012 14.9 0.0 3.8 3 1 0 4 4 4 0 FtsK/SpoIIIE family BRE1 PF08647.11 gi|14600457|ref|NP_146972.1| - 0.013 15.6 14.2 0.013 15.6 14.2 7.2 4 3 4 8 8 6 0 BRE1 E3 ubiquitin ligase DUF1664 PF07889.12 gi|14600457|ref|NP_146972.1| - 0.019 15.0 36.2 0.053 13.6 4.2 6.0 5 1 1 6 6 6 0 Protein of unknown function (DUF1664) RsgA_GTPase PF03193.16 gi|14600457|ref|NP_146972.1| - 0.022 14.7 0.0 0.17 11.8 0.0 2.6 1 0 0 1 1 1 0 RsgA GTPase SlyX PF04102.12 gi|14600457|ref|NP_146972.1| - 0.034 14.7 1.4 0.034 14.7 1.4 8.6 4 3 4 8 8 8 0 SlyX AAA_16 PF13191.6 gi|14600457|ref|NP_146972.1| - 0.049 14.0 0.1 0.049 14.0 0.1 4.9 2 1 1 3 3 2 0 AAA ATPase domain DUF948 PF06103.11 gi|14600457|ref|NP_146972.1| - 0.065 13.5 14.8 15 5.9 0.3 6.5 4 2 0 7 7 6 0 Bacterial protein of unknown function (DUF948) MMR_HSR1 PF01926.23 gi|14600457|ref|NP_146972.1| - 0.1 12.7 0.0 0.45 10.6 0.0 2.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase TssO PF17561.2 gi|14600457|ref|NP_146972.1| - 0.18 11.9 8.3 0.13 12.4 1.1 3.7 3 1 0 3 3 3 0 Type VI secretion system, TssO AAA_22 PF13401.6 gi|14600457|ref|NP_146972.1| - 0.19 12.0 4.8 0.19 12.0 0.0 3.1 2 1 0 2 2 2 0 AAA domain DUF16 PF01519.16 gi|14600457|ref|NP_146972.1| - 0.25 11.8 41.2 0.95 10.0 6.3 6.1 3 2 3 6 6 6 0 Protein of unknown function DUF16 Spc7 PF08317.11 gi|14600457|ref|NP_146972.1| - 0.3 9.9 88.2 0.038 12.9 19.2 5.6 2 2 4 6 6 6 0 Spc7 kinetochore protein PhageMin_Tail PF10145.9 gi|14600457|ref|NP_146972.1| - 0.52 10.1 6.0 0.29 11.0 1.5 2.8 2 1 1 3 3 2 0 Phage-related minor tail protein Dynamin_N PF00350.23 gi|14600457|ref|NP_146972.1| - 1.6 8.8 0.0 1.6 8.8 0.0 3.8 3 1 0 3 3 2 0 Dynamin family GAS PF13851.6 gi|14600457|ref|NP_146972.1| - 2.8 7.2 88.4 0.18 11.2 17.6 6.3 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding MscS_porin PF12795.7 gi|14600457|ref|NP_146972.1| - 4 6.9 74.1 0.0097 15.5 12.1 5.8 2 2 4 6 6 5 0 Mechanosensitive ion channel porin domain Metallophos PF00149.28 gi|14600458|ref|NP_146973.1| - 1.8e-11 45.0 0.0 2.8e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|14600458|ref|NP_146973.1| - 1.1e-07 32.2 0.0 3e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_L40e PF01020.17 gi|14600459|ref|NP_146974.1| - 3e-10 39.8 6.8 3.4e-10 39.7 6.8 1.0 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|14600459|ref|NP_146974.1| - 0.001 18.7 1.0 0.0014 18.3 1.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|14600459|ref|NP_146974.1| - 0.009 16.0 1.2 0.011 15.8 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|14600459|ref|NP_146974.1| - 0.069 12.5 4.5 0.12 11.7 4.3 1.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-CCHC_2 PF13696.6 gi|14600459|ref|NP_146974.1| - 6.9 6.6 8.8 5.3 7.0 0.7 2.2 2 0 0 2 2 2 0 Zinc knuckle XPG_I PF00867.18 gi|77640971|ref|NP_146975.2| - 4.9e-27 94.1 0.0 8.2e-27 93.4 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|77640971|ref|NP_146975.2| - 7.8e-22 77.7 0.0 1.2e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|77640971|ref|NP_146975.2| - 0.046 14.3 0.0 0.12 12.9 0.0 1.9 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold ASCH PF04266.14 gi|118430886|ref|NP_146976.2| - 4.3e-15 56.2 0.1 6.7e-15 55.6 0.1 1.3 1 0 0 1 1 1 1 ASCH domain MqsA_antitoxin PF15731.5 gi|118430887|ref|YP_874802.1| - 0.035 14.2 0.0 0.063 13.4 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Prok-RING_1 PF14446.6 gi|118430887|ref|YP_874802.1| - 0.04 13.8 0.3 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 PriA_CRR PF18319.1 gi|118430887|ref|YP_874802.1| - 0.081 12.9 2.4 5.3 7.1 0.3 2.3 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain Rubredoxin PF00301.20 gi|118430887|ref|YP_874802.1| - 0.19 11.8 0.6 20 5.3 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin DUF2387 PF09526.10 gi|118430887|ref|YP_874802.1| - 0.19 11.9 0.4 1.2 9.3 0.4 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) tRNA-Thr_ED PF08915.11 gi|118430888|ref|NP_146977.2| - 1.5e-43 148.1 0.0 2.2e-43 147.6 0.0 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|118430888|ref|NP_146977.2| - 3.9e-16 59.0 0.1 5.8e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 Anticodon binding domain Rad51 PF08423.11 gi|14600463|ref|NP_146978.1| - 7.7e-94 313.7 0.0 9.3e-94 313.4 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|14600463|ref|NP_146978.1| - 7.9e-16 58.3 0.1 1e-15 57.9 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|14600463|ref|NP_146978.1| - 2.3e-13 50.5 0.2 6.2e-13 49.1 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|14600463|ref|NP_146978.1| - 5.2e-11 42.3 0.0 7.6e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|14600463|ref|NP_146978.1| - 8.5e-09 35.3 0.0 1.3e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|14600463|ref|NP_146978.1| - 1.3e-05 25.2 0.0 3.3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|14600463|ref|NP_146978.1| - 1.7e-05 24.6 0.0 4.9e-05 23.1 0.0 1.9 2 0 0 2 2 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|14600463|ref|NP_146978.1| - 2e-05 24.8 0.0 4.6e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|14600463|ref|NP_146978.1| - 0.00014 21.6 0.3 0.001 18.8 0.0 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|14600463|ref|NP_146978.1| - 0.0014 19.2 1.6 0.0027 18.3 0.2 2.1 3 0 0 3 3 1 1 5'-3' exonuclease, C-terminal SAM fold AAA_18 PF13238.6 gi|14600463|ref|NP_146978.1| - 0.0026 18.3 0.3 0.007 16.9 0.0 1.9 2 1 0 2 2 1 1 AAA domain HHH_3 PF12836.7 gi|14600463|ref|NP_146978.1| - 0.014 15.6 0.0 4.8 7.5 0.1 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|14600463|ref|NP_146978.1| - 0.015 15.6 0.0 0.069 13.5 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif DUF4332 PF14229.6 gi|14600463|ref|NP_146978.1| - 0.02 15.1 0.1 0.14 12.4 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4332) AAA_24 PF13479.6 gi|14600463|ref|NP_146978.1| - 0.022 14.5 0.0 0.044 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|14600463|ref|NP_146978.1| - 0.022 15.0 0.0 0.063 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain BAF PF02961.14 gi|14600463|ref|NP_146978.1| - 0.027 14.9 0.0 0.069 13.6 0.0 1.7 1 0 0 1 1 1 0 Barrier to autointegration factor OCRL_clath_bd PF16726.5 gi|14600463|ref|NP_146978.1| - 0.049 13.8 0.1 0.1 12.8 0.1 1.4 1 0 0 1 1 1 0 Inositol polyphosphate 5-phosphatase clathrin binding domain HHH_8 PF14716.6 gi|14600463|ref|NP_146978.1| - 0.14 12.5 0.0 0.38 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain HIT PF01230.23 gi|118430889|ref|NP_146980.2| - 7.9e-14 52.2 0.0 1.2e-13 51.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|118430889|ref|NP_146980.2| - 3.6e-07 30.1 0.0 5.2e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|118430889|ref|NP_146980.2| - 4.7e-07 30.3 0.0 7e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DHHA1 PF02272.19 gi|14600466|ref|NP_146981.1| - 2.5e-15 57.1 0.0 7.9e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 DHHA1 domain DUF4129 PF13559.6 gi|118430890|ref|NP_146982.2| - 1e-14 54.5 1.9 4.1e-14 52.6 1.9 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Snf7 PF03357.21 gi|118430890|ref|NP_146982.2| - 0.29 10.7 0.4 0.49 10.0 0.4 1.2 1 0 0 1 1 1 0 Snf7 DUF4350 PF14258.6 gi|118430891|ref|NP_146983.2| - 0.019 15.4 0.5 0.085 13.3 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) DUF4392 PF14336.6 gi|118430891|ref|NP_146983.2| - 0.13 11.7 0.0 0.38 10.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4392) AAA_3 PF07726.11 gi|14600469|ref|NP_146984.1| - 1.5e-58 196.3 0.0 2.2e-58 195.8 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|14600469|ref|NP_146984.1| - 6.4e-18 64.4 0.5 1.8e-17 63.0 0.3 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|14600469|ref|NP_146984.1| - 1.1e-14 54.7 0.0 2.2e-14 53.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|14600469|ref|NP_146984.1| - 1.6e-05 25.3 0.0 4.2e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|14600469|ref|NP_146984.1| - 0.00025 20.2 0.0 0.0016 17.6 0.0 2.0 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|14600469|ref|NP_146984.1| - 0.00054 19.4 1.4 0.17 11.3 0.6 2.2 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|14600469|ref|NP_146984.1| - 0.0013 18.5 0.1 0.041 13.6 0.0 2.4 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|14600469|ref|NP_146984.1| - 0.0018 18.0 0.1 0.058 13.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM_lid PF17855.1 gi|14600469|ref|NP_146984.1| - 0.0053 17.1 0.4 0.011 16.1 0.4 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain AAA_16 PF13191.6 gi|14600469|ref|NP_146984.1| - 0.028 14.8 0.1 0.096 13.1 0.1 1.8 1 1 1 2 2 2 0 AAA ATPase domain DUF58 PF01882.18 gi|118430892|ref|NP_146985.2| - 2.2e-18 66.3 0.0 4.7e-18 65.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 PhdYeFM_antitox PF02604.19 gi|118430894|ref|NP_146987.2| - 0.057 13.2 0.0 0.4 10.5 0.0 2.2 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system DUF424 PF04242.13 gi|118430895|ref|NP_146988.2| - 7.9e-23 80.5 0.2 8.7e-23 80.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ETF PF01012.21 gi|118430896|ref|NP_146989.2| - 2.6e-40 138.3 1.7 3.6e-40 137.8 1.7 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain RE_HindIII PF09518.10 gi|118430896|ref|NP_146989.2| - 0.15 11.3 0.1 0.39 9.9 0.0 1.7 2 0 0 2 2 2 0 HindIII restriction endonuclease DUF218 PF02698.17 gi|118430896|ref|NP_146989.2| - 0.15 12.1 0.1 0.48 10.5 0.1 1.9 2 1 0 2 2 2 0 DUF218 domain ETF_alpha PF00766.19 gi|14600475|ref|NP_146990.1| - 1.1e-30 105.5 0.0 2.2e-30 104.5 0.0 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|14600475|ref|NP_146990.1| - 1.6e-13 51.0 0.0 2.7e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TPP_enzyme_M PF00205.22 gi|14600475|ref|NP_146990.1| - 0.0031 17.2 0.2 0.26 11.0 0.0 2.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF1646 PF07854.12 gi|118430897|ref|NP_146991.2| - 6.5e-160 532.2 32.0 7.6e-160 532.0 32.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) G_glu_transpept PF01019.21 gi|14600477|ref|NP_146992.1| - 3.5e-86 290.0 0.0 4.6e-86 289.6 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase EII-Sor PF03609.14 gi|14600477|ref|NP_146992.1| - 0.43 9.9 2.7 0.68 9.3 2.7 1.2 1 0 0 1 1 1 0 PTS system sorbose-specific iic component Usp PF00582.26 gi|118430898|ref|NP_146993.2| - 1.4e-37 129.3 5.5 6.6e-19 68.8 0.9 2.5 2 1 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.18 gi|118430898|ref|NP_146993.2| - 0.0018 18.3 0.2 1.3 9.0 0.0 2.7 2 1 0 2 2 2 2 DNA photolyase Methyltrans_SAM PF10672.9 gi|118430899|ref|NP_146994.2| - 1.1e-16 60.8 0.0 1.7e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.15 gi|118430899|ref|NP_146994.2| - 5.1e-14 52.3 0.0 8.4e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|118430899|ref|NP_146994.2| - 2.9e-09 37.0 0.0 4.5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|118430899|ref|NP_146994.2| - 4.3e-07 29.6 0.6 2.1e-06 27.4 0.2 2.2 2 0 0 2 2 2 1 PUA-like domain PrmA PF06325.13 gi|118430899|ref|NP_146994.2| - 0.00083 18.8 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|118430899|ref|NP_146994.2| - 0.0013 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PUA PF01472.20 gi|118430899|ref|NP_146994.2| - 0.0071 16.3 0.1 0.023 14.6 0.1 1.8 1 0 0 1 1 1 1 PUA domain Methyltransf_15 PF09445.10 gi|118430899|ref|NP_146994.2| - 0.07 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Fe_dep_repr_C PF02742.15 gi|14600480|ref|NP_146995.1| - 5.4e-10 39.2 0.0 9.5e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|14600480|ref|NP_146995.1| - 1.5e-09 37.9 0.0 2.8e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|14600480|ref|NP_146995.1| - 3.4e-05 23.6 0.0 0.00022 21.0 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|14600480|ref|NP_146995.1| - 8e-05 22.5 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF3096 PF11295.8 gi|14600480|ref|NP_146995.1| - 0.0021 17.7 0.5 1.4 8.6 0.2 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3096) HTH_IclR PF09339.10 gi|14600480|ref|NP_146995.1| - 0.0056 16.4 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|14600480|ref|NP_146995.1| - 0.0062 16.1 0.1 0.025 14.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|14600480|ref|NP_146995.1| - 0.026 14.5 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|14600480|ref|NP_146995.1| - 0.029 14.1 0.1 0.07 12.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|14600480|ref|NP_146995.1| - 0.033 14.0 0.1 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain GerE PF00196.19 gi|14600480|ref|NP_146995.1| - 0.073 12.6 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|14600480|ref|NP_146995.1| - 0.12 12.2 0.1 0.71 9.8 0.1 2.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|14600480|ref|NP_146995.1| - 0.13 12.2 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Snf7 PF03357.21 gi|118430900|ref|NP_146996.2| - 7.1e-07 29.0 1.7 9.1e-07 28.6 1.7 1.1 1 0 0 1 1 1 1 Snf7 Baculo_PEP_C PF04513.12 gi|118430900|ref|NP_146996.2| - 0.0072 16.4 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus RHSP PF07999.11 gi|118430900|ref|NP_146996.2| - 0.099 11.4 0.1 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon hot spot protein Phage_int_SAM_2 PF12834.7 gi|118430900|ref|NP_146996.2| - 0.12 13.1 0.2 0.27 12.0 0.2 1.5 1 0 0 1 1 1 0 Phage integrase, N-terminal CdvA PF18822.1 gi|14600482|ref|NP_146997.1| - 8.1e-32 109.6 8.8 9.6e-32 109.4 8.0 1.5 2 0 0 2 2 2 1 CdvA-like coiled-coil domain DUF1664 PF07889.12 gi|14600482|ref|NP_146997.1| - 0.0039 17.2 4.3 0.0081 16.2 0.5 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF1664) DUF5082 PF16888.5 gi|14600482|ref|NP_146997.1| - 0.026 14.8 7.3 4.1 7.7 5.9 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) DUF2228 PF10228.9 gi|14600482|ref|NP_146997.1| - 0.051 13.3 1.1 0.071 12.8 1.1 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) MCPsignal PF00015.21 gi|14600482|ref|NP_146997.1| - 0.073 12.9 2.1 0.11 12.3 1.1 1.8 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain LMBR1 PF04791.16 gi|14600482|ref|NP_146997.1| - 0.076 11.9 1.2 0.11 11.4 1.2 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein HAUS-augmin3 PF14932.6 gi|14600482|ref|NP_146997.1| - 0.12 11.9 3.4 1.8 8.1 0.4 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Uso1_p115_C PF04871.13 gi|14600482|ref|NP_146997.1| - 0.16 12.4 6.3 0.47 10.8 1.2 2.2 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF1690 PF07956.11 gi|14600482|ref|NP_146997.1| - 0.19 12.2 3.7 0.34 11.3 3.7 1.4 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) OmpH PF03938.14 gi|14600482|ref|NP_146997.1| - 0.19 12.1 6.4 2.2 8.6 0.2 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Ax_dynein_light PF10211.9 gi|14600482|ref|NP_146997.1| - 0.24 11.4 5.9 1.1 9.1 3.1 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain YabA PF06156.13 gi|14600482|ref|NP_146997.1| - 0.49 11.0 3.6 0.56 10.9 0.5 2.1 1 1 1 2 2 2 0 Initiation control protein YabA KfrA_N PF11740.8 gi|14600482|ref|NP_146997.1| - 0.58 10.8 5.3 4.4 8.0 2.7 2.2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term Fzo_mitofusin PF04799.13 gi|14600482|ref|NP_146997.1| - 0.77 9.3 3.5 0.59 9.7 1.3 1.8 1 1 1 2 2 2 0 fzo-like conserved region ApoLp-III PF07464.11 gi|14600482|ref|NP_146997.1| - 1 9.4 6.8 0.76 9.9 1.1 2.5 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) YtxH PF12732.7 gi|14600482|ref|NP_146997.1| - 1.5 9.4 4.3 8.8 6.9 0.5 2.6 2 0 0 2 2 2 0 YtxH-like protein P5CR_dimer PF14748.6 gi|118430901|ref|NP_146998.2| - 5.3e-30 103.7 0.4 9.8e-30 102.9 0.4 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|118430901|ref|NP_146998.2| - 1.1e-17 64.4 0.5 2.4e-17 63.3 0.5 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|118430901|ref|NP_146998.2| - 1.2e-07 31.5 0.9 5e-07 29.5 0.9 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|118430901|ref|NP_146998.2| - 0.00011 21.7 0.1 0.00017 21.0 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|118430901|ref|NP_146998.2| - 0.00035 20.8 0.1 0.00055 20.1 0.1 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|118430901|ref|NP_146998.2| - 0.0037 17.1 2.1 0.0073 16.2 2.1 1.5 1 0 0 1 1 1 1 Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|118430901|ref|NP_146998.2| - 0.0041 16.4 1.4 0.0064 15.8 1.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain PDH PF02153.17 gi|118430901|ref|NP_146998.2| - 0.0058 15.7 0.0 0.024 13.6 0.0 1.8 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|118430901|ref|NP_146998.2| - 0.0074 16.3 1.0 0.93 9.5 1.0 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.26 gi|118430901|ref|NP_146998.2| - 0.02 14.9 0.1 0.063 13.3 0.1 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 gi|118430901|ref|NP_146998.2| - 0.094 12.6 0.7 0.31 10.9 0.7 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Phage_holin_5_1 PF06946.11 gi|118430901|ref|NP_146998.2| - 1.3 9.5 4.6 5.7 7.4 0.0 3.1 2 1 1 3 3 3 0 Bacteriophage A118-like holin, Hol118 Peptidase_M54 PF07998.11 gi|118430902|ref|NP_146999.2| - 6e-32 111.2 0.0 6.9e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|118430902|ref|NP_146999.2| - 0.00028 20.8 0.0 0.00029 20.7 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|118430902|ref|NP_146999.2| - 0.024 13.6 0.0 0.029 13.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 CoiA PF06054.11 gi|118430902|ref|NP_146999.2| - 0.026 13.7 0.4 0.034 13.3 0.4 1.2 1 0 0 1 1 1 0 Competence protein CoiA-like family Reprolysin_4 PF13583.6 gi|118430902|ref|NP_146999.2| - 0.039 13.6 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|118430902|ref|NP_146999.2| - 0.042 12.5 0.1 0.058 12.0 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_3 PF13582.6 gi|118430902|ref|NP_146999.2| - 0.046 14.2 0.0 0.056 14.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|118430902|ref|NP_146999.2| - 0.11 12.6 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|118430902|ref|NP_146999.2| - 0.17 11.8 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Archease PF01951.16 gi|118430903|ref|NP_147000.2| - 8.3e-41 139.5 0.1 9.2e-41 139.3 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF1257 PF06868.11 gi|118430903|ref|NP_147000.2| - 0.13 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1257) HhH-GPD PF00730.25 gi|118430904|ref|NP_147001.2| - 1e-21 77.4 0.0 1.3e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|118430904|ref|NP_147001.2| - 2.7e-05 23.8 0.1 0.00059 19.6 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|118430904|ref|NP_147001.2| - 0.0036 17.9 0.1 0.13 12.9 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|118430904|ref|NP_147001.2| - 0.022 15.1 9.2 0.035 14.5 9.2 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHH_8 PF14716.6 gi|118430904|ref|NP_147001.2| - 0.042 14.2 0.1 1.2 9.6 0.0 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix domain Transposase_20 PF02371.16 gi|118430904|ref|NP_147001.2| - 0.054 13.8 0.0 0.23 11.8 0.0 2.0 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family P5CR_dimer PF14748.6 gi|118430904|ref|NP_147001.2| - 0.11 12.7 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation DUF1445 PF07286.12 gi|118430905|ref|NP_147002.2| - 0.032 14.2 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1445) AAA_22 PF13401.6 gi|118430906|ref|NP_147003.2| - 8.5e-08 32.6 0.0 2.3e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|118430906|ref|NP_147003.2| - 1.3e-07 31.4 0.0 4.5e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain TniB PF05621.11 gi|118430906|ref|NP_147003.2| - 0.00025 20.5 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein AAA_35 PF14516.6 gi|118430906|ref|NP_147003.2| - 0.0028 16.5 0.2 0.021 13.6 0.1 2.4 4 0 0 4 4 4 1 AAA-like domain NB-ARC PF00931.22 gi|118430906|ref|NP_147003.2| - 0.041 13.1 0.1 2.1 7.5 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|118430906|ref|NP_147003.2| - 0.074 13.4 1.7 1.9 8.9 1.1 2.6 2 1 0 2 2 2 0 AAA ATPase domain HTH_5 PF01022.20 gi|118430907|ref|YP_874803.1| - 0.0027 17.6 0.2 0.0027 17.6 0.2 1.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|118430907|ref|YP_874803.1| - 0.012 15.2 0.2 0.023 14.2 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|118430907|ref|YP_874803.1| - 0.015 15.3 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|118430907|ref|YP_874803.1| - 0.047 13.6 0.2 0.09 12.7 0.2 1.4 2 0 0 2 2 2 0 MarR family HTH_9 PF08221.11 gi|118430907|ref|YP_874803.1| - 0.061 13.4 0.4 0.14 12.3 0.2 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|118430908|ref|NP_147005.2| - 6.8e-15 54.7 2.1 1.2e-11 44.4 0.1 3.4 1 1 2 3 3 3 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|118430908|ref|NP_147005.2| - 0.0025 17.7 2.0 0.65 9.9 0.7 3.1 3 0 0 3 3 3 2 MarR family HTH_20 PF12840.7 gi|118430908|ref|NP_147005.2| - 0.014 15.4 0.1 3.2 7.9 0.2 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|118430908|ref|NP_147005.2| - 0.042 14.0 0.6 1.5 9.0 0.0 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain Gas_vesicle PF00741.18 gi|118430908|ref|NP_147005.2| - 0.052 13.7 0.1 0.15 12.2 0.1 1.8 1 0 0 1 1 1 0 Gas vesicle protein HTH_29 PF13551.6 gi|118430908|ref|NP_147005.2| - 0.079 13.0 0.0 0.62 10.1 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn helix MgtE PF01769.16 gi|118430910|ref|NP_147008.2| - 3.8e-12 46.7 36.6 7.4e-11 42.5 12.1 3.5 3 1 1 4 4 4 2 Divalent cation transporter 5-FTHF_cyc-lig PF01812.20 gi|14600493|ref|NP_147009.1| - 3.3e-44 151.0 0.0 3.9e-44 150.7 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MTHFR PF02219.17 gi|118430911|ref|NP_147010.2| - 0.00015 21.2 0.0 0.00016 21.1 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase UbiA PF01040.18 gi|14600495|ref|NP_147011.1| - 3.6e-36 124.8 19.2 4.8e-36 124.3 19.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family tRNA-synt_1f PF01921.18 gi|118430912|ref|NP_147012.2| - 2e-109 365.9 0.0 2.5e-109 365.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) Zn_Tnp_IS1595 PF12760.7 gi|118430912|ref|NP_147012.2| - 0.052 13.5 1.1 0.12 12.4 1.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_32 PF13565.6 gi|118430912|ref|NP_147012.2| - 0.27 11.9 2.7 0.63 10.7 0.7 2.6 2 0 0 2 2 2 0 Homeodomain-like domain Nudix_N_2 PF14803.6 gi|118430912|ref|NP_147012.2| - 0.3 11.0 2.4 1.3 9.0 2.4 2.1 1 1 0 1 1 1 0 Nudix N-terminal PCNA_N PF00705.18 gi|14600497|ref|NP_147013.1| - 1.8e-10 40.6 0.0 1.2e-09 38.0 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|14600497|ref|NP_147013.1| - 1.7e-06 28.2 0.0 7.5e-05 22.9 0.0 2.6 2 2 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|14600497|ref|NP_147013.1| - 0.063 12.7 0.0 0.17 11.3 0.0 1.7 1 1 1 2 2 2 0 Rad9 Aldedh PF00171.22 gi|118430913|ref|NP_147014.2| - 3.2e-26 91.9 0.1 1.2e-24 86.7 0.1 2.3 1 1 0 1 1 1 1 Aldehyde dehydrogenase family Cob_adeno_trans PF01923.18 gi|118430914|ref|NP_147015.2| - 4.7e-42 143.9 0.0 5.3e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HTH_3 PF01381.22 gi|118430915|ref|NP_147017.2| - 9.3e-07 28.8 1.0 1.7e-06 28.0 0.1 1.9 3 0 0 3 3 3 1 Helix-turn-helix HTH_11 PF08279.12 gi|118430915|ref|NP_147017.2| - 0.00038 20.4 0.3 0.0043 17.0 0.1 2.4 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|118430915|ref|NP_147017.2| - 0.0032 17.0 0.3 0.014 14.9 0.3 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 gi|118430915|ref|NP_147017.2| - 0.0036 16.9 0.6 0.43 10.2 0.2 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|118430915|ref|NP_147017.2| - 0.0048 16.9 0.3 0.024 14.6 0.0 2.2 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|118430915|ref|NP_147017.2| - 0.0073 16.6 0.1 0.0073 16.6 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|118430915|ref|NP_147017.2| - 0.0081 15.8 0.1 0.024 14.3 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|118430915|ref|NP_147017.2| - 0.0096 16.0 0.2 0.028 14.6 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|118430915|ref|NP_147017.2| - 0.024 14.5 0.2 0.024 14.5 0.2 2.3 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|118430915|ref|NP_147017.2| - 0.064 13.1 0.0 0.19 11.7 0.0 1.8 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Trp_repressor PF01371.19 gi|118430915|ref|NP_147017.2| - 0.075 13.2 0.3 0.18 12.0 0.1 1.7 2 1 0 2 2 2 0 Trp repressor protein ATP-synt_F PF01990.17 gi|118430915|ref|NP_147017.2| - 0.08 13.3 0.5 1.5 9.2 0.3 2.4 2 1 1 3 3 3 0 ATP synthase (F/14-kDa) subunit HTH_10 PF04967.12 gi|118430915|ref|NP_147017.2| - 0.08 12.8 0.6 0.32 10.8 0.0 2.1 2 1 0 2 2 2 0 HTH DNA binding domain HTH_23 PF13384.6 gi|118430915|ref|NP_147017.2| - 0.098 12.5 1.0 0.26 11.1 0.2 2.1 2 0 0 2 2 2 0 Homeodomain-like domain KORA PF16509.5 gi|118430915|ref|NP_147017.2| - 0.1 12.9 0.0 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor LacI PF00356.21 gi|118430915|ref|NP_147017.2| - 0.32 10.8 1.8 1.6 8.6 0.0 2.8 4 0 0 4 4 4 0 Bacterial regulatory proteins, lacI family Aminotran_1_2 PF00155.21 gi|118430916|ref|NP_147018.2| - 3.1e-37 128.6 0.0 3.7e-37 128.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|118430916|ref|NP_147018.2| - 8.8e-11 41.2 0.0 1.7e-10 40.3 0.0 1.3 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.19 gi|118430916|ref|NP_147018.2| - 0.00012 21.2 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|118430916|ref|NP_147018.2| - 0.012 15.0 0.0 0.036 13.4 0.0 1.7 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family ECH_1 PF00378.20 gi|118430916|ref|NP_147018.2| - 0.052 12.9 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase Beta_elim_lyase PF01212.21 gi|118430916|ref|NP_147018.2| - 0.093 12.0 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Gp_dh_C PF02800.20 gi|118430917|ref|NP_147019.2| - 5.3e-19 68.4 0.1 8.6e-19 67.7 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|118430917|ref|NP_147019.2| - 3.9e-11 43.1 0.1 9.9e-11 41.8 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|118430917|ref|NP_147019.2| - 7.3e-06 26.3 1.1 3.3e-05 24.1 0.6 2.4 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|118430917|ref|NP_147019.2| - 0.00061 19.2 0.7 0.2 11.0 0.2 2.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|118430917|ref|NP_147019.2| - 0.00065 20.5 0.2 0.0019 19.0 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|118430917|ref|NP_147019.2| - 0.053 13.8 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|118430917|ref|NP_147019.2| - 0.061 14.0 0.1 0.21 12.2 0.1 1.9 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.19 gi|118430918|ref|NP_147020.2| - 1.9e-92 310.2 0.0 2.1e-92 310.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lactamase_B_3 PF13483.6 gi|118430919|ref|NP_147021.2| - 1e-34 119.8 0.1 1.3e-34 119.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|118430919|ref|NP_147021.2| - 1.2e-11 44.5 2.9 5.1e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain MoeA_N PF03453.17 gi|14600506|ref|NP_147022.1| - 1.6e-29 102.7 0.1 2.4e-29 102.1 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|14600506|ref|NP_147022.1| - 4.1e-11 42.7 0.0 1.2e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain MobB PF03205.14 gi|118430920|ref|NP_147023.2| - 1.8e-26 92.6 0.1 2e-26 92.4 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.6 gi|118430920|ref|NP_147023.2| - 6.3e-05 22.9 0.2 0.00056 19.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118430920|ref|NP_147023.2| - 6.9e-05 23.3 0.2 0.00012 22.5 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|118430920|ref|NP_147023.2| - 0.00059 19.5 0.1 0.0011 18.6 0.1 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|118430920|ref|NP_147023.2| - 0.0017 18.8 0.0 0.0019 18.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter CbiA PF01656.23 gi|118430920|ref|NP_147023.2| - 0.0023 18.0 0.4 0.0033 17.5 0.4 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|118430920|ref|NP_147023.2| - 0.0036 17.6 0.0 0.0043 17.3 0.0 1.2 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|118430920|ref|NP_147023.2| - 0.0083 16.0 0.3 0.021 14.8 0.1 1.7 2 0 0 2 2 2 1 NTPase ATPase_2 PF01637.18 gi|118430920|ref|NP_147023.2| - 0.0089 16.0 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea PduV-EutP PF10662.9 gi|118430920|ref|NP_147023.2| - 0.009 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.6 gi|118430920|ref|NP_147023.2| - 0.0097 16.1 0.1 0.013 15.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118430920|ref|NP_147023.2| - 0.01 16.3 0.0 0.013 15.9 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|118430920|ref|NP_147023.2| - 0.01 15.6 0.2 0.063 13.0 0.5 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|118430920|ref|NP_147023.2| - 0.011 15.6 0.1 0.024 14.5 0.0 1.5 2 0 0 2 2 2 0 Adenylylsulphate kinase LpxK PF02606.14 gi|118430920|ref|NP_147023.2| - 0.012 14.7 1.2 0.022 13.9 1.2 1.6 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase PRK PF00485.18 gi|118430920|ref|NP_147023.2| - 0.023 14.4 0.2 0.079 12.7 0.1 1.8 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|118430920|ref|NP_147023.2| - 0.033 13.9 0.2 0.04 13.6 0.2 1.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|118430920|ref|NP_147023.2| - 0.044 13.4 0.1 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|118430920|ref|NP_147023.2| - 0.048 13.2 0.0 0.071 12.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region SMC_N PF02463.19 gi|118430920|ref|NP_147023.2| - 0.052 13.0 0.0 0.1 12.0 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_11 PF13086.6 gi|118430920|ref|NP_147023.2| - 0.056 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|118430920|ref|NP_147023.2| - 0.058 13.3 0.1 0.11 12.4 0.1 1.5 2 0 0 2 2 1 0 NACHT domain NB-ARC PF00931.22 gi|118430920|ref|NP_147023.2| - 0.061 12.5 0.1 0.19 10.9 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_29 PF13555.6 gi|118430920|ref|NP_147023.2| - 0.065 13.0 0.1 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RecA PF00154.21 gi|118430920|ref|NP_147023.2| - 0.073 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein MipZ PF09140.11 gi|118430920|ref|NP_147023.2| - 0.082 12.2 0.7 0.89 8.8 0.6 2.1 1 1 0 1 1 1 0 ATPase MipZ TK PF00265.18 gi|118430920|ref|NP_147023.2| - 0.093 12.6 0.0 0.11 12.3 0.0 1.3 1 1 0 1 1 1 0 Thymidine kinase AAA_35 PF14516.6 gi|118430920|ref|NP_147023.2| - 0.094 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.17 gi|118430920|ref|NP_147023.2| - 0.097 12.4 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein MeaB PF03308.16 gi|118430920|ref|NP_147023.2| - 0.097 11.6 1.7 0.12 11.3 0.3 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|118430920|ref|NP_147023.2| - 0.097 13.2 0.0 0.14 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|118430920|ref|NP_147023.2| - 0.1 11.9 0.2 0.17 11.2 0.2 1.4 1 1 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|118430920|ref|NP_147023.2| - 0.11 12.6 0.6 0.51 10.4 0.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|118430920|ref|NP_147023.2| - 0.17 11.6 0.1 0.37 10.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|118430920|ref|NP_147023.2| - 0.17 12.2 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|118430920|ref|NP_147023.2| - 0.23 11.3 1.2 0.37 10.7 0.6 1.6 1 1 1 2 2 1 0 RsgA GTPase NTP_transf_3 PF12804.7 gi|14600508|ref|NP_147024.1| - 1.1e-20 74.7 1.4 1.7e-20 74.0 1.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|14600508|ref|NP_147024.1| - 0.0086 15.8 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ribosomal_L38e PF01781.18 gi|14600510|ref|NP_147026.1| - 1.4e-08 34.7 2.0 1.6e-08 34.5 2.0 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family Beta-Casp PF10996.8 gi|14600511|ref|NP_147027.1| - 7.8e-17 61.6 0.0 1.3e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|14600511|ref|NP_147027.1| - 5.2e-14 51.9 0.0 1e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|14600511|ref|NP_147027.1| - 6.9e-11 42.5 2.1 2.7e-10 40.6 2.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|14600511|ref|NP_147027.1| - 4e-09 36.3 0.0 3.2e-08 33.3 0.0 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|14600511|ref|NP_147027.1| - 3.2e-06 26.7 0.0 1.5e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|14600511|ref|NP_147027.1| - 0.0015 18.5 0.0 0.01 15.8 0.0 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF167 PF02594.16 gi|118430921|ref|NP_147028.2| - 6.7e-19 67.8 0.1 8.9e-19 67.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Tub PF01167.18 gi|118430921|ref|NP_147028.2| - 0.094 12.5 0.0 0.094 12.5 0.0 1.0 1 0 0 1 1 1 0 Tub family TauE PF01925.19 gi|118430922|ref|NP_147029.2| - 1.2e-48 165.8 39.7 1.4e-48 165.6 39.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MFS_1 PF07690.16 gi|118430923|ref|NP_147030.2| - 1.6e-25 89.8 44.2 7.7e-15 54.7 28.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|118430923|ref|NP_147030.2| - 2.6e-11 43.0 21.9 1.4e-07 30.8 11.8 2.1 1 1 1 2 2 2 2 MFS_1 like family Nuc_H_symport PF03825.16 gi|118430923|ref|NP_147030.2| - 6.5e-05 22.1 17.0 0.00011 21.4 17.0 1.3 1 0 0 1 1 1 1 Nucleoside H+ symporter LacY_symp PF01306.19 gi|118430923|ref|NP_147030.2| - 7.4e-05 21.7 9.6 0.00011 21.1 9.6 1.3 1 0 0 1 1 1 1 LacY proton/sugar symporter Sld5 PF05916.11 gi|14600516|ref|NP_147032.1| - 1.3e-08 35.2 0.2 1.8e-08 34.8 0.2 1.2 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|118430924|ref|NP_147033.2| - 1e-97 325.7 0.0 1.4e-97 325.2 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|118430924|ref|NP_147033.2| - 5.5e-35 120.0 0.0 9.7e-35 119.2 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|118430924|ref|NP_147033.2| - 3.1e-29 101.2 1.3 7.2e-29 100.0 1.3 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|118430924|ref|NP_147033.2| - 7.4e-20 71.5 0.1 1.7e-19 70.3 0.1 1.6 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|118430924|ref|NP_147033.2| - 1.1e-07 31.4 0.0 2.4e-05 23.8 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|118430924|ref|NP_147033.2| - 5.4e-07 29.7 0.0 1.3e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RPA_C PF08784.11 gi|118430924|ref|NP_147033.2| - 0.0019 18.8 0.0 0.0042 17.7 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal AAA_3 PF07726.11 gi|118430924|ref|NP_147033.2| - 0.0027 17.5 0.0 0.0058 16.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|118430924|ref|NP_147033.2| - 0.036 13.8 0.1 0.4 10.4 0.1 2.5 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|118430924|ref|NP_147033.2| - 0.18 11.5 0.9 0.41 10.3 0.9 1.5 1 0 0 1 1 1 0 AAA domain HTH_32 PF13565.6 gi|118430924|ref|NP_147033.2| - 0.51 11.0 2.7 14 6.4 0.1 3.8 3 1 1 4 4 4 0 Homeodomain-like domain DEAD PF00270.29 gi|118430925|ref|NP_147034.2| - 2e-19 70.0 0.0 3.7e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|118430925|ref|NP_147034.2| - 1e-11 45.1 0.0 8.5e-11 42.2 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|118430925|ref|NP_147034.2| - 4.5e-11 43.2 0.1 2.2e-10 41.0 0.1 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|118430925|ref|NP_147034.2| - 2.8e-10 40.4 0.0 4.3e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.23 gi|118430925|ref|NP_147034.2| - 9.5e-10 37.9 0.0 8.8e-06 25.3 0.0 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|118430925|ref|NP_147034.2| - 5.3e-08 32.8 0.0 5.4e-07 29.6 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|118430925|ref|NP_147034.2| - 2.2e-05 24.2 0.0 0.00011 21.9 0.0 2.2 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|118430925|ref|NP_147034.2| - 0.0002 21.5 0.0 0.0099 16.1 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif Flavi_DEAD PF07652.14 gi|118430925|ref|NP_147034.2| - 0.00047 20.1 0.0 0.0033 17.4 0.0 2.2 2 0 0 2 2 2 1 Flavivirus DEAD domain Cdd1 PF11731.8 gi|118430925|ref|NP_147034.2| - 0.00085 19.5 0.0 0.027 14.7 0.0 2.5 1 1 1 2 2 2 1 Pathogenicity locus DUF4332 PF14229.6 gi|118430925|ref|NP_147034.2| - 0.00089 19.5 0.0 0.0039 17.4 0.0 2.1 2 0 0 2 2 1 1 Domain of unknown function (DUF4332) AAA_19 PF13245.6 gi|118430925|ref|NP_147034.2| - 0.0038 17.6 0.2 0.39 11.1 0.1 3.2 2 2 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|118430925|ref|NP_147034.2| - 0.0052 16.5 0.1 0.022 14.5 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|118430925|ref|NP_147034.2| - 0.013 15.2 0.1 0.058 13.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|118430925|ref|NP_147034.2| - 0.016 15.5 0.4 0.61 10.4 0.1 3.1 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|118430925|ref|NP_147034.2| - 0.025 13.7 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MarR_2 PF12802.7 gi|118430925|ref|NP_147034.2| - 0.049 13.5 0.2 0.9 9.5 0.0 3.1 2 0 0 2 2 2 0 MarR family AAA PF00004.29 gi|118430925|ref|NP_147034.2| - 0.058 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1611_N PF17396.2 gi|118430925|ref|NP_147034.2| - 0.062 13.5 0.0 0.19 12.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain HHH_8 PF14716.6 gi|118430925|ref|NP_147034.2| - 0.072 13.5 0.0 0.44 10.9 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|118430925|ref|NP_147034.2| - 0.075 12.6 0.2 0.38 10.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|118430925|ref|NP_147034.2| - 0.082 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein UvrD-helicase PF00580.21 gi|118430925|ref|NP_147034.2| - 0.23 10.9 0.8 0.62 9.5 0.1 1.8 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Sacchrp_dh_C PF16653.5 gi|14602185|ref|NP_147035.1| - 8.5e-10 39.2 0.0 1.1e-09 38.8 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|14602185|ref|NP_147035.1| - 2.3e-05 24.1 0.0 3.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|14602185|ref|NP_147035.1| - 0.00018 21.5 0.0 0.00042 20.3 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|14602185|ref|NP_147035.1| - 0.00073 19.7 0.1 0.002 18.3 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|14602185|ref|NP_147035.1| - 0.003 17.8 0.0 0.005 17.1 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|14602185|ref|NP_147035.1| - 0.015 14.9 0.1 0.026 14.1 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|14602185|ref|NP_147035.1| - 0.032 13.8 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|14602185|ref|NP_147035.1| - 0.039 13.3 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|14602185|ref|NP_147035.1| - 0.042 14.1 1.0 0.81 10.0 0.3 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|14602185|ref|NP_147035.1| - 0.066 12.5 0.1 0.1 11.9 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|14602185|ref|NP_147035.1| - 0.13 11.5 0.1 0.2 10.8 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain HTH_AsnC-type PF13404.6 gi|118430926|ref|YP_874804.1| - 0.032 14.1 0.3 0.051 13.4 0.3 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RuvB_C PF05491.13 gi|118430926|ref|YP_874804.1| - 0.076 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_31 PF13560.6 gi|118430927|ref|NP_147038.2| - 4.5e-07 30.1 0.3 1e-06 29.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|118430927|ref|NP_147038.2| - 5.7e-06 26.3 0.0 2.1e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|118430927|ref|NP_147038.2| - 7.4e-05 22.7 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain YAcAr PF10686.9 gi|118430927|ref|NP_147038.2| - 0.0087 16.0 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 YspA, cpYpsA-related SLOG family MarR_2 PF12802.7 gi|118430927|ref|NP_147038.2| - 0.075 12.9 0.0 0.45 10.4 0.0 2.4 3 0 0 3 3 3 0 MarR family HTH_38 PF13936.6 gi|118430927|ref|NP_147038.2| - 0.082 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|118430927|ref|NP_147038.2| - 0.093 12.3 0.1 0.29 10.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1207 PF06727.11 gi|118430927|ref|NP_147038.2| - 0.12 11.3 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1207) NAC PF01849.18 gi|118430928|ref|NP_147039.2| - 0.00026 20.9 0.0 0.0005 20.0 0.0 1.5 1 0 0 1 1 1 1 NAC domain HOIP-UBA PF16678.5 gi|118430928|ref|NP_147039.2| - 0.0058 16.7 0.1 0.015 15.3 0.1 1.7 2 0 0 2 2 2 1 HOIP UBA domain pair UBA_4 PF14555.6 gi|118430928|ref|NP_147039.2| - 0.032 14.1 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain PMT_2 PF13231.6 gi|118430929|ref|NP_147040.2| - 7.4e-07 29.5 11.8 7.4e-07 29.5 11.8 2.5 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|118430929|ref|NP_147040.2| - 3.8 7.0 17.6 3.3 7.2 10.5 3.6 2 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2795 PF11387.8 gi|14600524|ref|NP_147041.1| - 0.12 12.7 0.4 0.45 10.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) TusA PF01206.17 gi|14600524|ref|NP_147041.1| - 0.14 12.0 0.0 0.56 10.1 0.0 2.0 3 0 0 3 3 3 0 Sulfurtransferase TusA AbiEi_1 PF09407.10 gi|14600524|ref|NP_147041.1| - 0.15 12.3 0.1 0.28 11.5 0.1 1.4 1 0 0 1 1 1 0 AbiEi antitoxin C-terminal domain NAD_binding_8 PF13450.6 gi|118430930|ref|NP_147042.2| - 0.00059 20.0 0.1 0.0015 18.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 gi|118430930|ref|NP_147042.2| - 0.085 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|118430930|ref|NP_147042.2| - 0.18 11.6 0.1 0.27 11.1 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Zip PF02535.22 gi|118430932|ref|NP_147044.2| - 0.0092 15.2 3.4 0.0092 15.2 3.4 2.8 2 1 1 3 3 3 2 ZIP Zinc transporter Form_Nir_trans PF01226.17 gi|118430932|ref|NP_147044.2| - 4.1 6.7 13.6 0.15 11.4 0.8 3.5 2 1 2 4 4 4 0 Formate/nitrite transporter PTS_2-RNA PF01885.16 gi|118430933|ref|NP_147045.2| - 7.1e-24 84.8 0.0 9.1e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Auto_anti-p27 PF06677.12 gi|14600529|ref|NP_147046.1| - 5e-13 49.0 0.6 6.9e-13 48.5 0.6 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Peptidase_M50 PF02163.22 gi|118430934|ref|NP_147048.2| - 8.7e-11 41.6 10.5 2.9e-10 39.9 10.5 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 gi|118430934|ref|NP_147048.2| - 2.6e-09 36.8 0.1 5.2e-09 35.8 0.1 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|118430934|ref|NP_147048.2| - 3.1e-09 37.0 1.4 1.2e-08 35.1 0.0 2.2 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|118430934|ref|NP_147048.2| - 5.2e-05 23.5 0.0 0.00014 22.1 0.0 1.7 2 0 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 gi|118430934|ref|NP_147048.2| - 0.03 14.3 0.5 0.069 13.1 0.1 1.8 2 0 0 2 2 2 0 Tricorn protease PDZ domain PDZ_1 PF12812.7 gi|118430934|ref|NP_147048.2| - 0.04 13.9 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 PDZ-like domain GRASP55_65 PF04495.14 gi|118430934|ref|NP_147048.2| - 0.12 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain PfkB PF00294.24 gi|118430935|ref|NP_147049.2| - 1e-07 31.6 0.0 0.00011 21.7 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Peptidase_M16 PF00675.20 gi|118430936|ref|NP_147050.2| - 1.4e-20 73.8 0.0 2.3e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|118430936|ref|NP_147050.2| - 6.4e-20 71.9 0.0 1e-19 71.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase M16 inactive domain NTP_transf_2 PF01909.23 gi|118430937|ref|NP_147051.2| - 3.7e-09 36.8 0.0 5.8e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|118430937|ref|NP_147051.2| - 2e-05 24.6 0.0 3.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_8 PF02954.19 gi|118430937|ref|NP_147051.2| - 0.024 14.4 0.0 0.31 10.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.16 gi|118430937|ref|NP_147051.2| - 0.08 12.5 4.0 0.14 11.7 0.6 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|118430937|ref|NP_147051.2| - 0.09 12.3 1.1 0.13 11.9 0.2 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Methyltransf_11 PF08241.12 gi|118430939|ref|NP_147054.2| - 1.2e-14 54.7 0.0 2.7e-14 53.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|118430939|ref|NP_147054.2| - 2e-13 50.9 0.0 3.7e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|118430939|ref|NP_147054.2| - 1.2e-09 38.2 0.0 1.5e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|118430939|ref|NP_147054.2| - 2.3e-07 30.7 0.0 3.2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|118430939|ref|NP_147054.2| - 3.6e-07 30.9 0.0 5.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|118430939|ref|NP_147054.2| - 1.9e-05 24.1 0.0 2.4e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|118430939|ref|NP_147054.2| - 0.0011 18.6 0.0 0.002 17.8 0.0 1.6 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|118430939|ref|NP_147054.2| - 0.15 11.0 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 gi|118430939|ref|NP_147054.2| - 0.19 11.3 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Ribosomal_L2_C PF03947.18 gi|14600538|ref|NP_147055.1| - 2.6e-44 150.5 0.6 3.6e-44 150.0 0.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|14600538|ref|NP_147055.1| - 4.7e-17 61.7 0.0 9.9e-17 60.7 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain AAA_10 PF12846.7 gi|14600539|ref|NP_147056.1| - 3.3e-06 26.3 0.0 0.041 12.8 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.12 gi|14600539|ref|NP_147056.1| - 7.2e-06 24.9 0.0 0.0077 14.9 0.0 2.4 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|14600539|ref|NP_147056.1| - 8.5e-06 26.1 0.0 1.8e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|14600539|ref|NP_147056.1| - 2.4e-05 23.8 0.0 0.0014 18.1 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF87 PF01935.17 gi|14600539|ref|NP_147056.1| - 2.4e-05 24.5 0.0 3.7e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|14600539|ref|NP_147056.1| - 0.00032 19.8 0.0 0.0045 16.0 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.6 gi|14600539|ref|NP_147056.1| - 0.0026 17.4 0.2 0.037 13.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|14600539|ref|NP_147056.1| - 0.0057 16.7 0.0 0.034 14.1 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|14600539|ref|NP_147056.1| - 0.011 16.2 1.1 0.059 13.8 0.2 2.3 2 2 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|14600539|ref|NP_147056.1| - 0.049 13.5 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain TraG-D_C PF12696.7 gi|14600539|ref|NP_147056.1| - 0.059 13.4 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|14600539|ref|NP_147056.1| - 0.069 11.9 0.0 0.098 11.4 0.0 1.1 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer RuvB_N PF05496.12 gi|14600539|ref|NP_147056.1| - 0.18 11.6 0.1 0.53 10.0 0.1 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|14600539|ref|NP_147056.1| - 0.19 10.8 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|14600539|ref|NP_147056.1| - 0.25 10.8 0.0 0.43 10.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SPC25 PF06703.11 gi|14600540|ref|NP_147057.1| - 2.4 8.0 5.4 0.5 10.1 0.2 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) PEP_mutase PF13714.6 gi|118430941|ref|NP_147059.2| - 1.3e-53 182.0 1.8 1.5e-53 181.7 1.8 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|118430941|ref|NP_147059.2| - 3.4e-12 45.6 1.0 9.4e-12 44.2 1.0 1.5 1 1 0 1 1 1 1 Isocitrate lyase family Methyltrn_RNA_3 PF02598.17 gi|118430942|ref|NP_147061.2| - 4.5e-42 144.5 0.0 6.3e-42 144.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|118430942|ref|NP_147061.2| - 0.098 12.8 0.0 0.47 10.6 0.0 1.9 2 0 0 2 2 2 0 SpoU rRNA Methylase family Ribosomal_L3 PF00297.22 gi|14600545|ref|NP_147062.1| - 4.4e-80 269.4 0.0 8e-80 268.6 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|118430943|ref|NP_147063.2| - 1.4e-40 139.0 0.2 1.7e-40 138.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|118430944|ref|NP_147064.2| - 4.9e-19 68.5 5.7 6.4e-18 64.9 5.7 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 DNA_mis_repair PF01119.19 gi|118430944|ref|NP_147064.2| - 0.024 14.3 0.1 0.027 14.1 0.1 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain TusA PF01206.17 gi|118430944|ref|NP_147064.2| - 0.038 13.8 0.1 0.05 13.4 0.1 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA ParA PF10609.9 gi|118430945|ref|NP_147065.2| - 9.7e-87 290.5 0.0 1.3e-86 290.1 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|118430945|ref|NP_147065.2| - 4.6e-16 59.0 0.0 2.5e-15 56.7 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|118430945|ref|NP_147065.2| - 2.5e-10 40.3 0.1 0.00019 21.0 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|118430945|ref|NP_147065.2| - 5.7e-08 32.9 0.6 3.9e-06 26.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|118430945|ref|NP_147065.2| - 5.2e-06 26.4 0.1 0.0016 18.3 0.1 2.2 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|118430945|ref|NP_147065.2| - 7.6e-05 22.1 0.1 0.00015 21.1 0.1 1.5 2 0 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 gi|118430945|ref|NP_147065.2| - 8.1e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|118430945|ref|NP_147065.2| - 0.00026 20.3 0.5 0.0028 16.9 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_30 PF13604.6 gi|118430945|ref|NP_147065.2| - 0.0025 17.5 0.2 0.0039 16.9 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|118430945|ref|NP_147065.2| - 0.006 16.2 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|118430945|ref|NP_147065.2| - 0.016 14.2 0.3 0.055 12.4 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|118430945|ref|NP_147065.2| - 0.019 14.4 0.1 0.09 12.2 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|118430945|ref|NP_147065.2| - 0.074 12.5 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF3138 PF11336.8 gi|118430945|ref|NP_147065.2| - 0.27 9.8 0.1 0.37 9.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) CBS PF00571.28 gi|14600549|ref|NP_147066.1| - 4.1e-50 168.0 15.0 3.8e-14 52.9 0.7 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|14600550|ref|NP_147067.1| - 2.7e-41 139.8 11.7 5.6e-10 39.5 0.8 4.2 4 0 0 4 4 4 4 CBS domain DUF2300 PF10062.9 gi|14600550|ref|NP_147067.1| - 0.069 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) S4_2 PF13275.6 gi|14600550|ref|NP_147067.1| - 0.19 11.5 0.9 0.29 11.0 0.2 1.7 2 0 0 2 2 2 0 S4 domain CBS PF00571.28 gi|14600551|ref|NP_147068.1| - 3.1e-39 133.2 14.4 2e-12 47.4 1.6 4.1 4 0 0 4 4 4 4 CBS domain Oxidored_nitro PF00148.19 gi|14600551|ref|NP_147068.1| - 0.15 10.8 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AIRS PF00586.24 gi|118430946|ref|NP_147069.2| - 3.8e-09 37.1 0.3 9.8e-09 35.8 0.2 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|118430947|ref|NP_147070.2| - 7.3e-43 147.0 0.4 8.4e-43 146.8 0.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Chlor_dismutase PF06778.12 gi|118430948|ref|NP_147071.2| - 7.9e-35 120.2 0.1 9.5e-35 119.9 0.1 1.0 1 0 0 1 1 1 1 Chlorite dismutase C6_DPF PF10170.9 gi|118430950|ref|NP_147076.2| - 0.0029 17.9 0.9 0.0029 17.9 0.9 3.0 1 1 1 2 2 2 1 Cysteine-rich domain zf-B_box PF00643.24 gi|118430950|ref|NP_147076.2| - 0.0063 16.6 6.8 0.0063 16.6 6.8 3.8 2 1 2 4 4 4 3 B-box zinc finger DZR PF12773.7 gi|118430950|ref|NP_147076.2| - 0.055 13.5 22.5 0.86 9.7 0.4 3.2 1 1 2 3 3 3 0 Double zinc ribbon IBR PF01485.21 gi|118430950|ref|NP_147076.2| - 4.7 7.5 21.2 14 6.0 4.1 3.2 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain Redoxin PF08534.10 gi|14600560|ref|NP_147077.1| - 0.0014 18.3 0.2 0.0057 16.4 0.1 1.7 1 1 1 2 2 2 1 Redoxin Thioredoxin PF00085.20 gi|14600560|ref|NP_147077.1| - 0.0029 17.6 0.1 0.0072 16.3 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|14600560|ref|NP_147077.1| - 0.013 15.8 0.1 1.6 9.1 0.2 2.3 1 1 1 2 2 2 0 Thioredoxin-like Thioredoxin_4 PF13462.6 gi|14600560|ref|NP_147077.1| - 0.033 14.4 0.4 0.064 13.4 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|14600560|ref|NP_147077.1| - 0.035 14.6 0.0 0.047 14.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain SNO PF01174.19 gi|118430951|ref|NP_147078.2| - 4.9e-50 170.0 0.0 5.4e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|118430951|ref|NP_147078.2| - 9.7e-09 35.3 0.0 1.4e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|118430951|ref|NP_147078.2| - 3.9e-08 33.1 0.0 4.7e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|118430951|ref|NP_147078.2| - 2.4e-06 27.3 0.0 3.3e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|118430951|ref|NP_147078.2| - 0.083 12.7 0.2 0.13 12.1 0.2 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family SOR_SNZ PF01680.17 gi|118430952|ref|NP_147079.2| - 1.3e-96 322.4 3.2 1.9e-96 321.8 3.2 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|118430952|ref|NP_147079.2| - 3e-05 23.4 0.5 3e-05 23.4 0.5 2.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|118430952|ref|NP_147079.2| - 0.0011 18.5 0.8 0.34 10.3 0.1 3.2 2 1 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 gi|118430952|ref|NP_147079.2| - 0.0029 16.7 0.7 0.4 9.7 0.1 2.5 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|118430952|ref|NP_147079.2| - 0.0086 15.5 0.1 0.0086 15.5 0.1 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|118430952|ref|NP_147079.2| - 0.0092 15.2 0.3 0.5 9.5 0.0 2.4 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|118430952|ref|NP_147079.2| - 0.023 13.9 0.0 1.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Peptidase_S66C PF17676.1 gi|118430952|ref|NP_147079.2| - 0.037 14.6 0.0 0.083 13.4 0.0 1.5 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain TetR_C_27 PF17935.1 gi|118430952|ref|NP_147079.2| - 0.042 13.9 0.0 0.091 12.8 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain VitK2_biosynth PF02621.14 gi|118430953|ref|NP_147080.2| - 6.8e-86 288.1 0.1 7.7e-86 287.9 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Radical_SAM PF04055.21 gi|118430954|ref|NP_147081.2| - 1e-17 65.0 0.0 1.5e-17 64.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|118430954|ref|NP_147081.2| - 0.21 11.7 0.0 0.47 10.6 0.0 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|14600565|ref|NP_147082.1| - 5.4e-15 56.2 0.1 1.1e-14 55.2 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.14 gi|14600566|ref|NP_147083.1| - 1.4e-07 31.4 0.0 1.8e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis IL13 PF03487.13 gi|14600566|ref|NP_147083.1| - 0.092 12.5 0.3 0.23 11.2 0.0 1.8 3 0 0 3 3 3 0 Interleukin-13 NTP_transferase PF00483.23 gi|118430955|ref|NP_147084.2| - 4.4e-28 98.5 0.0 4.9e-28 98.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|118430955|ref|NP_147084.2| - 1e-14 55.2 0.0 1.3e-14 54.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF359 PF04019.12 gi|14600568|ref|NP_147085.1| - 9.5e-23 80.2 0.0 1.3e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) IspD PF01128.19 gi|14600568|ref|NP_147085.1| - 0.032 14.0 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Spt4 PF06093.13 gi|118430956|ref|NP_147086.2| - 2.6e-11 43.5 0.1 3.2e-11 43.2 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|118430956|ref|NP_147086.2| - 4.2e-05 23.5 0.7 5.6e-05 23.1 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|118430956|ref|NP_147086.2| - 4.6e-05 22.7 2.5 6.3e-05 22.2 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|118430956|ref|NP_147086.2| - 7e-05 22.6 1.9 9.7e-05 22.2 1.9 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|118430956|ref|NP_147086.2| - 0.00013 21.5 3.7 0.0002 21.0 3.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|118430956|ref|NP_147086.2| - 0.0002 20.8 2.0 0.018 14.5 0.2 2.3 2 1 0 2 2 2 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|118430956|ref|NP_147086.2| - 0.00054 19.6 1.5 0.01 15.5 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|118430956|ref|NP_147086.2| - 0.0034 17.4 0.2 0.0041 17.1 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|118430956|ref|NP_147086.2| - 0.0045 17.0 2.7 0.0073 16.4 2.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|118430956|ref|NP_147086.2| - 0.0049 16.5 0.8 0.38 10.5 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|118430956|ref|NP_147086.2| - 0.0062 17.3 0.8 0.0082 16.9 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon family TackOD1 PF18551.1 gi|118430956|ref|NP_147086.2| - 0.016 14.9 0.3 0.02 14.6 0.3 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-IS66 PF13005.7 gi|118430956|ref|NP_147086.2| - 0.029 14.8 0.6 1.3 9.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.6 gi|118430956|ref|NP_147086.2| - 0.055 13.4 2.8 2.2 8.3 3.0 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 YhfH PF14149.6 gi|118430956|ref|NP_147086.2| - 0.06 13.3 1.3 0.52 10.3 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|118430956|ref|NP_147086.2| - 0.066 12.9 1.0 0.64 9.7 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NRDD PF13597.6 gi|118430956|ref|NP_147086.2| - 0.078 11.8 0.4 0.091 11.5 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|118430956|ref|NP_147086.2| - 0.08 13.1 4.9 1.6 8.9 5.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|118430956|ref|NP_147086.2| - 0.1 12.4 3.0 0.24 11.2 3.0 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain Ribosomal_L32p PF01783.23 gi|118430956|ref|NP_147086.2| - 0.13 12.6 2.0 0.24 11.7 2.0 1.4 1 1 0 1 1 1 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.13 gi|118430956|ref|NP_147086.2| - 0.24 11.1 2.0 3.1 7.6 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-HYPF PF07503.12 gi|118430956|ref|NP_147086.2| - 0.25 11.2 1.7 4.6 7.1 0.1 2.2 2 0 0 2 2 2 0 HypF finger zf_UBZ PF18439.1 gi|118430956|ref|NP_147086.2| - 0.34 10.5 2.4 6.7 6.4 0.4 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_9 PF14369.6 gi|118430956|ref|NP_147086.2| - 0.38 11.1 3.4 4.8 7.5 3.4 2.1 1 1 0 1 1 1 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|118430956|ref|NP_147086.2| - 0.54 10.2 4.0 1.8 8.6 0.4 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-tcix PF14952.6 gi|118430956|ref|NP_147086.2| - 1.6 8.4 7.6 0.64 9.7 0.5 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_4 PF13717.6 gi|118430956|ref|NP_147086.2| - 1.9 8.5 5.5 2.6 8.0 0.4 2.3 1 1 0 2 2 2 0 zinc-ribbon domain SHS2_Rpb7-N PF03876.17 gi|14600570|ref|NP_147087.1| - 7.8e-13 48.6 0.0 1.3e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|14600570|ref|NP_147087.1| - 3.3e-09 36.9 0.7 7.7e-09 35.8 0.7 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Fer4_8 PF13183.6 gi|14600571|ref|NP_147088.1| - 3.2e-05 24.3 0.2 3.9e-05 24.0 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|14600571|ref|NP_147088.1| - 0.00011 22.2 0.2 0.00012 22.1 0.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|14600571|ref|NP_147088.1| - 0.00012 21.7 3.6 0.00018 21.2 3.6 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|14600571|ref|NP_147088.1| - 0.00023 21.9 0.7 0.00029 21.6 0.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|14600571|ref|NP_147088.1| - 0.00031 20.8 0.4 0.00037 20.6 0.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|14600571|ref|NP_147088.1| - 0.00056 20.4 0.2 0.00065 20.2 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|14600571|ref|NP_147088.1| - 0.00074 20.1 0.4 0.0009 19.8 0.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|14600571|ref|NP_147088.1| - 0.0013 18.9 0.1 0.0013 18.9 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|14600571|ref|NP_147088.1| - 0.0023 18.8 0.1 0.0023 18.8 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|14600571|ref|NP_147088.1| - 0.0025 17.8 2.1 0.0033 17.4 2.1 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|14600571|ref|NP_147088.1| - 0.009 16.1 2.7 0.013 15.5 2.7 1.2 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_20 PF14691.6 gi|14600571|ref|NP_147088.1| - 0.01 15.6 0.1 0.01 15.6 0.1 1.1 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|14600571|ref|NP_147088.1| - 0.012 16.5 4.0 0.016 16.1 4.0 1.2 1 0 0 1 1 1 0 4Fe-4S binding domain SCO1-SenC PF02630.14 gi|14600571|ref|NP_147088.1| - 0.026 14.4 0.0 0.028 14.3 0.0 1.0 1 0 0 1 1 1 0 SCO1/SenC Fer4_4 PF12800.7 gi|14600571|ref|NP_147088.1| - 0.032 14.8 1.4 0.044 14.3 1.4 1.2 1 0 0 1 1 1 0 4Fe-4S binding domain LUD_dom PF02589.15 gi|118430957|ref|NP_147089.2| - 2.7e-55 187.0 1.2 1.3e-54 184.9 1.2 1.8 1 1 0 1 1 1 1 LUD domain DUF1931 PF09123.11 gi|118430957|ref|NP_147089.2| - 0.13 12.3 0.3 9.4 6.3 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1931) DHO_dh PF01180.21 gi|118430958|ref|NP_147090.2| - 2.5e-50 171.3 0.0 2.9e-50 171.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|118430958|ref|NP_147090.2| - 8.6e-08 31.6 0.0 5.6e-07 28.9 0.0 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 gi|118430958|ref|NP_147090.2| - 0.0022 17.5 1.9 1.2 8.5 0.1 3.1 2 1 0 3 3 3 2 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.21 gi|118430958|ref|NP_147090.2| - 0.0023 17.4 0.7 0.043 13.3 0.0 2.7 2 1 0 3 3 3 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|118430958|ref|NP_147090.2| - 0.047 12.7 0.9 0.52 9.2 0.0 2.3 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain HMGL-like PF00682.19 gi|118430958|ref|NP_147090.2| - 0.072 12.6 0.0 0.15 11.6 0.0 1.5 2 0 0 2 2 2 0 HMGL-like FMN_dh PF01070.18 gi|118430958|ref|NP_147090.2| - 0.36 9.8 4.6 0.3 10.0 0.2 2.6 4 0 0 4 4 4 0 FMN-dependent dehydrogenase NMO PF03060.15 gi|118430958|ref|NP_147090.2| - 0.4 10.0 13.7 0.14 11.5 0.6 3.0 2 1 0 3 3 3 0 Nitronate monooxygenase DHDPS PF00701.22 gi|118430958|ref|NP_147090.2| - 0.91 8.2 3.6 4.6 5.9 0.1 2.3 3 0 0 3 3 3 0 Dihydrodipicolinate synthetase family Amidohydro_1 PF01979.20 gi|118430959|ref|NP_147091.2| - 4e-07 29.7 0.0 8.3e-07 28.6 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|118430959|ref|NP_147091.2| - 0.00012 21.7 0.0 0.41 10.0 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family RINGv PF12906.7 gi|118430959|ref|NP_147091.2| - 0.25 11.5 1.1 0.46 10.7 1.1 1.4 1 0 0 1 1 1 0 RING-variant domain GDPD PF03009.17 gi|14600575|ref|NP_147092.1| - 4e-17 62.8 0.0 6.8e-15 55.5 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|14600575|ref|NP_147092.1| - 0.00016 22.0 0.4 0.0007 20.0 0.2 2.2 2 1 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family ADH_zinc_N PF00107.26 gi|14600575|ref|NP_147092.1| - 0.0077 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase EAL PF00563.20 gi|14600575|ref|NP_147092.1| - 0.017 14.7 0.1 0.024 14.1 0.1 1.2 1 0 0 1 1 1 0 EAL domain TMP-TENI PF02581.17 gi|14600575|ref|NP_147092.1| - 0.092 12.1 0.1 0.14 11.5 0.1 1.4 1 1 0 1 1 1 0 Thiamine monophosphate synthase Peptidase_S8 PF00082.22 gi|118430960|ref|NP_147093.2| - 4.5e-45 154.2 4.0 7.9e-45 153.4 4.0 1.4 1 0 0 1 1 1 1 Subtilase family EF-hand_5 PF13202.6 gi|118430960|ref|NP_147093.2| - 2.3 7.8 5.3 19 4.9 0.7 3.6 3 0 0 3 3 3 0 EF hand DUF4145 PF13643.6 gi|118430961|ref|NP_147094.2| - 3.3e-05 23.9 0.1 7.6e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) NGP1NT PF08153.12 gi|118430961|ref|NP_147094.2| - 0.0085 16.2 0.1 1.7 8.8 0.0 2.6 2 1 1 3 3 3 2 NGP1NT (NUC091) domain HEPN_Cthe2314 PF18730.1 gi|118430961|ref|NP_147094.2| - 0.017 15.2 0.1 0.03 14.4 0.1 1.5 1 0 0 1 1 1 0 Cthe_2314-like HEPN PsiA PF06952.11 gi|118430961|ref|NP_147094.2| - 0.023 14.0 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 PsiA protein DUF4294 PF14127.6 gi|118430961|ref|NP_147094.2| - 0.11 12.4 2.4 0.14 12.0 1.8 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4294) Fis1_TPR_N PF14852.6 gi|14600578|ref|NP_147095.1| - 0.15 11.8 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat SPC12 PF06645.13 gi|14600578|ref|NP_147095.1| - 1.1 9.4 4.7 0.29 11.2 1.2 1.8 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) CBS PF00571.28 gi|14600580|ref|NP_147097.1| - 2.6e-31 107.8 7.5 3.2e-16 59.5 3.4 2.1 2 0 0 2 2 2 2 CBS domain Robl_LC7 PF03259.17 gi|14600580|ref|NP_147097.1| - 0.011 15.5 0.2 3.8 7.3 0.1 2.2 2 0 0 2 2 2 0 Roadblock/LC7 domain IF3_N PF05198.16 gi|14600580|ref|NP_147097.1| - 0.048 13.9 0.7 0.28 11.5 0.0 2.3 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain AFOR_C PF01314.18 gi|118430962|ref|NP_147096.2| - 3.7e-69 233.6 0.0 5.1e-69 233.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|118430962|ref|NP_147096.2| - 2.7e-57 193.8 0.0 4.2e-57 193.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Caskin-Pro-rich PF16907.5 gi|118430962|ref|NP_147096.2| - 0.11 13.1 0.0 0.22 12.1 0.0 1.4 1 0 0 1 1 1 0 Proline rich region of Caskin proteins DUF131 PF01998.17 gi|118430963|ref|NP_147099.2| - 1.4e-13 50.2 10.7 1.4e-13 50.2 10.7 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF3955 PF13127.6 gi|118430963|ref|NP_147099.2| - 0.051 13.4 10.7 0.12 12.2 2.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) DUF872 PF05915.12 gi|118430963|ref|NP_147099.2| - 2.5 8.3 10.2 1.6 8.9 6.4 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF2207 PF09972.9 gi|118430963|ref|NP_147099.2| - 3.4 6.3 10.0 3.9 6.1 10.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2614 PF11023.8 gi|118430963|ref|NP_147099.2| - 9.8 6.3 7.8 20 5.3 1.1 2.0 2 0 0 2 2 2 0 Zinc-ribbon containing domain BPD_transp_1 PF00528.22 gi|118430964|ref|NP_147101.2| - 8.2e-19 68.1 13.5 8.2e-19 68.1 13.5 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|118430965|ref|NP_147102.2| - 6.4e-22 78.4 0.1 7.8e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|118430965|ref|NP_147102.2| - 0.0024 17.5 0.2 0.0042 16.7 0.2 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 gi|118430965|ref|NP_147102.2| - 0.013 14.6 0.1 0.019 14.1 0.1 1.3 1 0 0 1 1 1 0 PBP superfamily domain PIN PF01850.21 gi|14600586|ref|NP_147103.1| - 1.5e-21 77.2 0.1 1.8e-21 76.9 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|14600586|ref|NP_147103.1| - 0.00021 22.0 0.2 0.00041 21.1 0.2 1.5 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|14600586|ref|NP_147103.1| - 0.0021 18.6 0.0 0.0033 18.0 0.0 1.3 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|118430966|ref|YP_874807.1| - 1e-22 80.3 3.2 1.3e-22 80.0 3.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 N2227 PF07942.12 gi|118430967|ref|YP_874808.1| - 0.00047 19.4 0.2 0.00051 19.3 0.2 1.3 1 1 0 1 1 1 1 N2227-like protein Methyltransf_11 PF08241.12 gi|118430967|ref|YP_874808.1| - 0.03 15.0 0.1 0.26 12.0 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|118430967|ref|YP_874808.1| - 0.037 13.9 0.0 0.04 13.8 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|118430967|ref|YP_874808.1| - 0.062 14.0 0.1 0.25 12.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain CMAS PF02353.20 gi|118430967|ref|YP_874808.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|118430967|ref|YP_874808.1| - 0.16 11.4 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB HhH-GPD PF00730.25 gi|118430968|ref|NP_147105.2| - 1.3e-05 25.6 0.0 1.6e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|118430968|ref|NP_147105.2| - 0.00016 22.2 0.1 0.041 14.5 0.0 2.4 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|118430968|ref|NP_147105.2| - 0.015 15.6 0.1 1.3 9.3 0.0 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH PF00633.23 gi|118430968|ref|NP_147105.2| - 0.076 12.9 1.5 0.18 11.8 0.1 2.3 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF2283 PF10049.9 gi|118430969|ref|YP_874809.1| - 2.1e-20 72.7 1.4 2.6e-20 72.4 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Transposase_mut PF00872.18 gi|118430969|ref|YP_874809.1| - 0.054 12.4 0.1 0.062 12.2 0.1 1.0 1 0 0 1 1 1 0 Transposase, Mutator family PNP_UDP_1 PF01048.20 gi|118430970|ref|NP_147106.2| - 5.8e-08 32.3 0.0 6.6e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DUF724 PF05266.14 gi|118430970|ref|NP_147106.2| - 0.089 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3368 PF11848.8 gi|118430971|ref|NP_147107.2| - 3.5e-17 61.9 0.3 1e-16 60.4 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) UPF0175 PF03683.13 gi|118430972|ref|YP_874810.1| - 5e-26 90.2 0.1 5.8e-26 90.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) PIN_2 PF10130.9 gi|14600592|ref|NP_147109.1| - 7e-15 55.4 0.8 9.1e-15 55.1 0.8 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|14600592|ref|NP_147109.1| - 2.3e-08 34.8 0.2 2.8e-08 34.5 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|14600592|ref|NP_147109.1| - 0.0069 16.9 2.6 0.0094 16.4 2.6 1.2 1 0 0 1 1 1 1 PIN domain DUF1367 PF07105.11 gi|14600592|ref|NP_147109.1| - 0.015 15.0 0.1 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1367) PIN_4 PF13638.6 gi|14600592|ref|NP_147109.1| - 0.018 15.3 1.0 0.034 14.4 1.0 1.5 1 1 0 1 1 1 0 PIN domain PIN_12 PF16289.5 gi|14600592|ref|NP_147109.1| - 0.025 15.1 1.1 0.077 13.5 1.1 1.7 1 1 0 1 1 1 0 PIN domain LuxQ-periplasm PF09308.10 gi|14600592|ref|NP_147109.1| - 0.027 14.0 0.2 0.066 12.7 0.1 1.6 1 1 1 2 2 2 0 LuxQ, periplasmic NAF PF03822.14 gi|14600592|ref|NP_147109.1| - 0.073 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 NAF domain PIN_8 PF18476.1 gi|14600592|ref|NP_147109.1| - 0.1 12.4 0.3 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 PIN like domain PIN PF01850.21 gi|118430974|ref|NP_147110.2| - 1.4e-06 28.8 0.8 1.7e-06 28.5 0.8 1.1 1 0 0 1 1 1 1 PIN domain Clr5 PF14420.6 gi|118430974|ref|NP_147110.2| - 0.19 12.0 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 Clr5 domain DUF104 PF01954.16 gi|118430975|ref|NP_147111.2| - 2.4e-20 72.7 2.6 2.8e-20 72.5 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF1376 PF07120.11 gi|118430976|ref|NP_147114.2| - 0.12 12.8 8.0 0.23 11.8 0.1 4.2 5 1 0 5 5 5 0 Protein of unknown function (DUF1376) GrpE PF01025.19 gi|118430976|ref|NP_147114.2| - 2.2 7.9 7.7 5.2 6.7 0.8 3.1 3 0 0 3 3 3 0 GrpE LMBR1 PF04791.16 gi|118430976|ref|NP_147114.2| - 3.8 6.3 7.6 1.3e+02 1.2 7.6 2.2 1 1 0 1 1 1 0 LMBR1-like membrane protein DUF104 PF01954.16 gi|118430977|ref|YP_874812.1| - 1.4e-15 57.4 1.0 1.5e-15 57.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Cadherin PF00028.17 gi|118430977|ref|YP_874812.1| - 0.031 14.7 0.0 0.035 14.5 0.0 1.0 1 0 0 1 1 1 0 Cadherin domain Protoglobin PF11563.8 gi|14600601|ref|NP_147118.1| - 1.7e-35 122.2 0.0 1.9e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Protoglobin MarR_2 PF12802.7 gi|14600602|ref|NP_147119.1| - 4.7e-14 52.0 0.0 1.1e-13 50.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|14600602|ref|NP_147119.1| - 1.3e-09 38.4 0.0 2.4e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|14600602|ref|NP_147119.1| - 3.6e-09 36.4 0.0 6.8e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|14600602|ref|NP_147119.1| - 5.7e-06 26.1 0.2 3.1e-05 23.8 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|14600602|ref|NP_147119.1| - 1.3e-05 24.9 0.3 6.8e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF1495 PF07381.11 gi|14600602|ref|NP_147119.1| - 1.5e-05 24.7 0.0 0.00097 18.9 0.0 2.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Fe_dep_repress PF01325.19 gi|14600602|ref|NP_147119.1| - 0.00023 21.3 0.0 0.00048 20.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|14600602|ref|NP_147119.1| - 0.0056 16.7 0.0 0.02 14.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|14600602|ref|NP_147119.1| - 0.0059 16.2 0.1 0.022 14.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|14600602|ref|NP_147119.1| - 0.0064 16.0 0.1 0.035 13.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|14600602|ref|NP_147119.1| - 0.041 14.1 0.0 0.068 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|14600602|ref|NP_147119.1| - 0.054 13.3 0.0 0.22 11.3 0.0 2.1 1 1 0 1 1 1 0 LexA DNA binding domain DUF2513 PF10711.9 gi|14600602|ref|NP_147119.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_20 PF12840.7 gi|118430978|ref|NP_147120.2| - 2.9e-12 46.5 0.6 4.7e-12 45.8 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|118430978|ref|NP_147120.2| - 6.9e-08 32.2 1.1 4.5e-07 29.6 1.1 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|118430978|ref|NP_147120.2| - 2.6e-07 30.5 2.2 3.7e-07 30.0 0.6 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Penicillinase_R PF03965.16 gi|118430978|ref|NP_147120.2| - 4.1e-06 27.1 0.7 1.3e-05 25.5 0.2 1.9 2 0 0 2 2 2 1 Penicillinase repressor IF2_N PF04760.15 gi|118430978|ref|NP_147120.2| - 0.0038 17.0 1.1 1.8 8.5 0.0 2.7 2 1 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region FUR PF01475.19 gi|118430978|ref|NP_147120.2| - 0.018 15.2 0.1 0.03 14.5 0.1 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family DUF1870 PF08965.10 gi|118430978|ref|NP_147120.2| - 0.024 14.6 0.1 0.77 9.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1870) TBPIP PF07106.13 gi|118430978|ref|NP_147120.2| - 0.036 14.0 0.1 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain Type2_restr_D3 PF16902.5 gi|118430978|ref|NP_147120.2| - 0.039 13.9 3.3 0.13 12.2 0.2 2.3 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain HTH_32 PF13565.6 gi|118430978|ref|NP_147120.2| - 0.064 13.9 0.7 0.19 12.3 0.2 2.0 2 1 0 2 2 2 0 Homeodomain-like domain Peptidase_S66C PF17676.1 gi|118430978|ref|NP_147120.2| - 0.075 13.6 0.1 0.2 12.2 0.0 1.7 2 0 0 2 2 2 0 LD-carboxypeptidase C-terminal domain Sld5 PF05916.11 gi|118430978|ref|NP_147120.2| - 0.079 13.4 0.5 7.9 7.0 0.0 2.2 2 0 0 2 2 2 0 GINS complex protein DUF2513 PF10711.9 gi|118430978|ref|NP_147120.2| - 0.091 13.1 0.0 0.32 11.3 0.0 1.9 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) EKR PF10371.9 gi|118430978|ref|NP_147120.2| - 0.16 11.7 0.9 0.45 10.3 0.1 2.1 3 0 0 3 3 3 0 Domain of unknown function AhpC-TSA PF00578.21 gi|118430979|ref|YP_874813.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.10 gi|118430979|ref|YP_874813.1| - 0.15 11.8 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Redoxin AhpC-TSA PF00578.21 gi|14600604|ref|NP_147121.1| - 1.1e-29 102.8 0.0 1.3e-29 102.7 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|14600604|ref|NP_147121.1| - 1.4e-20 73.5 0.0 1.7e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin GSHPx PF00255.19 gi|14600604|ref|NP_147121.1| - 0.029 13.9 0.0 0.098 12.2 0.0 1.8 1 1 0 1 1 1 0 Glutathione peroxidase Thioredoxin_8 PF13905.6 gi|14600604|ref|NP_147121.1| - 0.081 13.3 0.0 0.095 13.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|14600604|ref|NP_147121.1| - 0.15 12.2 0.0 0.19 11.9 0.0 1.1 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF4079 PF13301.6 gi|118430980|ref|YP_874814.1| - 0.84 9.8 5.1 1.9 8.6 5.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) DUF3995 PF13160.6 gi|118430980|ref|YP_874814.1| - 0.88 9.9 10.2 0.47 10.8 8.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) DUF3487 PF11990.8 gi|118430980|ref|YP_874814.1| - 2 8.3 5.7 1.3 8.9 4.1 1.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3487) DUF485 PF04341.12 gi|118430980|ref|YP_874814.1| - 2.2 8.3 10.5 0.8 9.7 0.6 2.8 1 1 2 3 3 3 0 Protein of unknown function, DUF485 HTH_5 PF01022.20 gi|14600606|ref|NP_147123.1| - 4.2e-10 39.3 0.6 5.6e-10 38.9 0.6 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|14600606|ref|NP_147123.1| - 5.5e-08 32.8 1.5 8.8e-08 32.1 1.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|14600606|ref|NP_147123.1| - 0.0004 20.2 0.7 0.00069 19.5 0.7 1.3 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|14600606|ref|NP_147123.1| - 0.00067 19.7 0.5 0.001 19.1 0.5 1.3 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 gi|14600606|ref|NP_147123.1| - 0.0019 18.0 0.0 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|14600606|ref|NP_147123.1| - 0.0077 16.0 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_29 PF13551.6 gi|14600606|ref|NP_147123.1| - 0.012 15.7 0.4 0.018 15.1 0.4 1.4 1 0 0 1 1 1 0 Winged helix-turn helix RP-C PF03428.13 gi|14600606|ref|NP_147123.1| - 0.02 14.5 0.1 0.025 14.2 0.1 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_24 PF13412.6 gi|14600606|ref|NP_147123.1| - 0.031 13.9 0.1 0.057 13.0 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|14600606|ref|NP_147123.1| - 0.033 14.1 0.1 0.057 13.4 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.6 gi|14600606|ref|NP_147123.1| - 0.039 14.0 0.0 0.047 13.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|14600606|ref|NP_147123.1| - 0.045 14.1 0.4 0.073 13.4 0.4 1.4 1 1 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|14600606|ref|NP_147123.1| - 0.049 13.4 0.3 0.11 12.4 0.3 1.7 1 1 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|14600606|ref|NP_147123.1| - 0.05 13.4 3.9 0.054 13.3 3.1 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain DDE_Tnp_2 PF04693.12 gi|14600606|ref|NP_147123.1| - 0.061 12.5 0.0 0.07 12.4 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 HTH_9 PF08221.11 gi|14600606|ref|NP_147123.1| - 0.078 13.1 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Replic_Relax PF13814.6 gi|14600606|ref|NP_147123.1| - 0.082 13.0 0.6 0.1 12.7 0.6 1.1 1 0 0 1 1 1 0 Replication-relaxation Dimerisation2 PF16864.5 gi|14600606|ref|NP_147123.1| - 0.18 11.8 0.0 0.24 11.4 0.0 1.1 1 0 0 1 1 1 0 Dimerisation domain Cupredoxin_1 PF13473.6 gi|118430981|ref|NP_147124.2| - 4.2e-11 42.9 0.0 4.6e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|118430981|ref|NP_147124.2| - 3.9e-05 24.0 0.1 9.1e-05 22.8 0.1 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.11 gi|118430981|ref|NP_147124.2| - 0.015 14.8 0.0 0.25 10.8 0.0 2.1 1 1 1 2 2 2 0 Sulfocyanin (SoxE) domain Cu-oxidase_2 PF07731.14 gi|118430981|ref|NP_147124.2| - 0.073 12.8 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 Multicopper oxidase HTH_20 PF12840.7 gi|14600610|ref|NP_147127.1| - 0.001 19.1 5.1 0.001 19.1 5.1 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain Ribosomal_S19e PF01090.19 gi|14600610|ref|NP_147127.1| - 0.019 14.7 0.7 0.03 14.0 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein S19e HTH_41 PF14502.6 gi|14600610|ref|NP_147127.1| - 0.044 13.5 2.4 1.6 8.5 0.2 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain CobD_Cbib PF03186.13 gi|14600610|ref|NP_147127.1| - 0.057 12.6 0.3 0.075 12.2 0.3 1.2 1 0 0 1 1 1 0 CobD/Cbib protein HxlR PF01638.17 gi|14600610|ref|NP_147127.1| - 0.21 11.5 1.4 0.41 10.5 0.2 1.9 2 0 0 2 2 2 0 HxlR-like helix-turn-helix LexA_DNA_bind PF01726.16 gi|14600610|ref|NP_147127.1| - 0.9 9.4 5.4 0.2 11.5 0.4 2.4 3 1 0 3 3 3 0 LexA DNA binding domain HTH_30 PF13556.6 gi|14600610|ref|NP_147127.1| - 1.4 8.8 9.7 1.6 8.6 0.1 3.3 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain T2SSF PF00482.23 gi|118430983|ref|NP_147129.2| - 0.025 14.5 0.3 0.046 13.7 0.3 1.5 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F JIP_LZII PF16471.5 gi|118430983|ref|NP_147129.2| - 0.13 12.4 3.1 3.1 8.0 0.3 2.3 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Adeno_terminal PF02459.15 gi|118430983|ref|NP_147129.2| - 0.15 10.5 2.7 0.14 10.5 2.7 1.2 1 0 0 1 1 1 0 Adenoviral DNA terminal protein ABC_tran PF00005.27 gi|118430984|ref|NP_147130.2| - 6.6e-33 114.1 0.0 1.5e-32 113.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|118430984|ref|NP_147130.2| - 1.3e-16 60.9 0.2 3.1e-16 59.6 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|118430984|ref|NP_147130.2| - 1.9e-10 41.0 0.0 6.3e-07 29.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118430984|ref|NP_147130.2| - 3.1e-06 26.8 0.0 1.9e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|118430984|ref|NP_147130.2| - 3.1e-06 27.5 0.2 0.003 17.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|118430984|ref|NP_147130.2| - 0.0028 17.4 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118430984|ref|NP_147130.2| - 0.0045 17.4 0.0 0.38 11.2 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|118430984|ref|NP_147130.2| - 0.0056 15.9 0.1 0.012 14.9 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activat PF00158.26 gi|118430984|ref|NP_147130.2| - 0.018 14.7 0.1 0.41 10.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|118430984|ref|NP_147130.2| - 0.022 15.2 0.2 0.056 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain ATPase PF06745.13 gi|118430984|ref|NP_147130.2| - 0.025 13.9 2.1 0.82 9.0 0.0 3.0 3 0 0 3 3 3 0 KaiC AAA_13 PF13166.6 gi|118430984|ref|NP_147130.2| - 0.025 13.2 0.0 1.7 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|118430984|ref|NP_147130.2| - 0.033 14.3 0.0 0.069 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|118430984|ref|NP_147130.2| - 0.036 13.6 0.5 7.6 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|118430984|ref|NP_147130.2| - 0.038 13.9 0.3 0.083 12.8 0.3 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|118430984|ref|NP_147130.2| - 0.039 13.8 0.1 0.083 12.8 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 gi|118430984|ref|NP_147130.2| - 0.041 13.3 0.1 2.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein RsgA_GTPase PF03193.16 gi|118430984|ref|NP_147130.2| - 0.064 13.2 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|118430984|ref|NP_147130.2| - 0.073 12.8 0.3 0.14 11.9 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.18 gi|118430984|ref|NP_147130.2| - 0.084 12.6 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 gi|118430984|ref|NP_147130.2| - 0.087 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MaoC_dehydrat_N PF13452.6 gi|118430984|ref|NP_147130.2| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 N-terminal half of MaoC dehydratase ABC_ATPase PF09818.9 gi|118430984|ref|NP_147130.2| - 0.74 8.5 6.8 3 6.5 0.0 3.0 2 1 0 3 3 3 0 Predicted ATPase of the ABC class DUF87 PF01935.17 gi|118430984|ref|NP_147130.2| - 1.2 9.2 5.9 0.91 9.6 2.3 2.4 2 1 1 3 3 3 0 Helicase HerA, central domain ABC_tran PF00005.27 gi|118430985|ref|NP_147131.2| - 9.8e-28 97.4 0.0 1.6e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|118430985|ref|NP_147131.2| - 6.1e-20 71.5 0.2 1.3e-19 70.4 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|118430985|ref|NP_147131.2| - 3.2e-07 30.7 0.1 4.5e-06 27.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|118430985|ref|NP_147131.2| - 6e-07 29.6 2.5 0.00012 22.0 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118430985|ref|NP_147131.2| - 1.4e-05 24.6 0.2 3.3e-05 23.4 0.2 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|118430985|ref|NP_147131.2| - 1.9e-05 25.1 0.0 4.8e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|118430985|ref|NP_147131.2| - 0.0001 22.8 1.6 0.0055 17.1 1.6 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|118430985|ref|NP_147131.2| - 0.00029 20.3 0.4 0.12 11.8 0.3 2.3 2 0 0 2 2 2 2 Bacterial TniB protein Rad17 PF03215.15 gi|118430985|ref|NP_147131.2| - 0.0011 18.9 0.1 0.0068 16.3 0.0 2.1 1 1 0 2 2 2 1 Rad17 P-loop domain NACHT PF05729.12 gi|118430985|ref|NP_147131.2| - 0.0013 18.7 0.1 0.0029 17.5 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_5 PF07728.14 gi|118430985|ref|NP_147131.2| - 0.0021 18.1 0.1 0.0067 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|118430985|ref|NP_147131.2| - 0.0021 17.3 1.0 0.0053 16.0 1.0 1.8 1 1 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.6 gi|118430985|ref|NP_147131.2| - 0.0035 17.1 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|118430985|ref|NP_147131.2| - 0.0044 16.4 0.2 0.034 13.5 0.0 2.4 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|118430985|ref|NP_147131.2| - 0.005 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase RNA_helicase PF00910.22 gi|118430985|ref|NP_147131.2| - 0.0057 17.0 0.0 0.016 15.5 0.0 1.8 2 0 0 2 2 1 1 RNA helicase PRK PF00485.18 gi|118430985|ref|NP_147131.2| - 0.0058 16.4 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 gi|118430985|ref|NP_147131.2| - 0.0059 16.3 0.1 0.0087 15.7 0.1 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|118430985|ref|NP_147131.2| - 0.0065 16.2 0.3 0.3 10.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|118430985|ref|NP_147131.2| - 0.0073 15.9 0.0 0.46 10.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|118430985|ref|NP_147131.2| - 0.0083 16.6 0.0 0.014 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|118430985|ref|NP_147131.2| - 0.017 15.3 0.1 0.04 14.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|118430985|ref|NP_147131.2| - 0.022 14.7 0.4 0.19 11.6 0.4 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|118430985|ref|NP_147131.2| - 0.033 13.9 0.6 0.63 9.7 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain PhoH PF02562.16 gi|118430985|ref|NP_147131.2| - 0.048 13.1 0.2 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|118430985|ref|NP_147131.2| - 0.056 13.1 0.3 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain MCM PF00493.23 gi|118430985|ref|NP_147131.2| - 0.059 12.5 0.2 2.2 7.3 0.0 2.6 1 1 1 3 3 3 0 MCM P-loop domain DUF87 PF01935.17 gi|118430985|ref|NP_147131.2| - 0.07 13.2 0.6 0.16 12.1 0.2 1.8 1 1 1 2 2 2 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|118430985|ref|NP_147131.2| - 0.1 13.2 0.1 0.16 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|118430985|ref|NP_147131.2| - 0.13 12.4 0.8 0.29 11.2 0.2 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|118430985|ref|NP_147131.2| - 0.15 10.7 0.0 2.2 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|118430985|ref|NP_147131.2| - 0.22 10.7 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.22 gi|118430986|ref|NP_147132.2| - 1.5e-30 106.3 12.2 1.5e-30 106.3 12.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|118430986|ref|NP_147132.2| - 1.6e-05 24.8 1.1 1.6e-05 24.8 1.1 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF945 PF06097.11 gi|118430986|ref|NP_147132.2| - 0.45 9.6 0.9 0.58 9.2 0.9 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) BPD_transp_1 PF00528.22 gi|14600616|ref|NP_147133.1| - 7.9e-37 126.8 9.1 1.5e-36 125.9 5.4 2.1 1 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|118430987|ref|NP_147134.2| - 5.5e-94 315.2 4.0 5.5e-94 315.2 4.0 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.20 gi|118430987|ref|NP_147134.2| - 1.6e-28 98.3 1.4 1.7e-14 53.4 0.0 2.5 2 0 0 2 2 2 2 PKD domain PKD_3 PF16820.5 gi|118430987|ref|NP_147134.2| - 0.059 13.1 0.2 0.42 10.4 0.0 2.5 2 1 0 2 2 2 0 PKD-like domain DUF4330 PF14221.6 gi|118430987|ref|NP_147134.2| - 0.12 12.5 1.7 0.62 10.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) FGGY_C PF02782.16 gi|118430988|ref|NP_147135.2| - 1.8e-14 53.9 0.1 3e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 gi|118430988|ref|NP_147135.2| - 5.5e-10 39.2 0.0 7.5e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FAD_binding_4 PF01565.23 gi|118430989|ref|NP_147137.2| - 1.9e-31 108.6 0.4 4.4e-31 107.5 0.4 1.6 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|118430989|ref|NP_147137.2| - 7.8e-21 74.8 0.0 1e-20 74.4 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain DAO PF01266.24 gi|118430990|ref|NP_147138.2| - 7.9e-40 137.5 0.8 8.9e-40 137.3 0.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|118430990|ref|NP_147138.2| - 1.8e-05 24.0 1.1 2e-05 23.9 0.3 1.4 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|118430990|ref|NP_147138.2| - 4e-05 23.0 0.3 0.013 14.7 0.3 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|118430990|ref|NP_147138.2| - 4.1e-05 23.7 0.1 8.5e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|118430990|ref|NP_147138.2| - 0.00016 21.0 0.4 0.00031 20.1 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|118430990|ref|NP_147138.2| - 0.00019 20.6 0.3 0.062 12.3 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|118430990|ref|NP_147138.2| - 0.00059 18.6 0.4 0.0012 17.7 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|118430990|ref|NP_147138.2| - 0.0012 19.3 0.6 0.0026 18.3 0.6 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|118430990|ref|NP_147138.2| - 0.0045 16.4 1.0 0.0064 15.9 1.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|118430990|ref|NP_147138.2| - 0.043 13.4 0.1 0.072 12.7 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|118430990|ref|NP_147138.2| - 0.074 12.3 0.2 0.27 10.5 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|118430990|ref|NP_147138.2| - 0.097 12.6 1.2 0.13 12.2 0.3 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|118430990|ref|NP_147138.2| - 0.12 11.6 0.2 0.12 11.6 0.2 2.2 3 0 0 3 3 3 0 Thi4 family NAD_binding_9 PF13454.6 gi|118430990|ref|NP_147138.2| - 0.13 12.2 0.2 2.1 8.3 0.1 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|118430990|ref|NP_147138.2| - 0.14 11.2 0.5 0.2 10.7 0.5 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A HpcH_HpaI PF03328.14 gi|14600622|ref|NP_147139.1| - 2e-35 121.9 0.0 2.6e-34 118.3 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|14600622|ref|NP_147139.1| - 1.8e-18 66.8 0.0 3.3e-13 49.5 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold TrmO PF01980.16 gi|118430991|ref|NP_147140.2| - 8e-29 100.3 0.0 1.1e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Peptidase_M55 PF04951.13 gi|118430992|ref|NP_147141.2| - 3e-74 249.7 0.0 3.5e-74 249.5 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Arginase PF00491.21 gi|118430993|ref|NP_147142.2| - 1e-55 189.2 0.0 1.3e-55 188.9 0.0 1.1 1 0 0 1 1 1 1 Arginase family PGM_PMM_I PF02878.16 gi|118430994|ref|NP_147143.2| - 3.8e-44 149.8 0.0 7.1e-44 148.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|118430994|ref|NP_147143.2| - 1.2e-22 80.5 0.0 4.2e-22 78.7 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|118430994|ref|NP_147143.2| - 1.1e-17 64.2 0.0 1.9e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|118430994|ref|NP_147143.2| - 1.7e-13 50.5 1.0 6.4e-13 48.7 0.5 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Tautomerase_2 PF14552.6 gi|118430994|ref|NP_147143.2| - 0.035 14.2 0.0 0.084 13.0 0.0 1.6 1 0 0 1 1 1 0 Tautomerase enzyme ADH_zinc_N PF00107.26 gi|118430994|ref|NP_147143.2| - 0.057 13.4 0.2 0.35 10.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase DJ-1_PfpI PF01965.24 gi|14600627|ref|NP_147144.1| - 2.6e-59 199.7 0.0 3e-59 199.5 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|14600627|ref|NP_147144.1| - 0.00059 19.7 0.0 0.00074 19.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|14600627|ref|NP_147144.1| - 0.016 14.9 0.0 0.14 11.9 0.0 2.2 1 1 1 2 2 2 0 ThiJ/PfpI family-like Peptidase_C26 PF07722.13 gi|14600627|ref|NP_147144.1| - 0.059 13.1 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.6 gi|14600627|ref|NP_147144.1| - 0.068 12.3 0.0 0.11 11.6 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|14600627|ref|NP_147144.1| - 0.083 12.5 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Fer4_7 PF12838.7 gi|118430995|ref|NP_147145.2| - 1e-11 45.2 19.7 2.1e-07 31.4 9.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|118430995|ref|NP_147145.2| - 1.1e-10 40.9 16.9 2.6e-09 36.5 4.7 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|118430995|ref|NP_147145.2| - 1.7e-09 37.6 6.3 3.1e-09 36.8 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|118430995|ref|NP_147145.2| - 4.3e-09 36.4 10.0 5.6e-09 36.0 10.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|118430995|ref|NP_147145.2| - 1.9e-08 35.1 9.1 2.5e-05 25.1 1.6 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|118430995|ref|NP_147145.2| - 8.5e-08 32.0 4.2 8.5e-08 32.0 4.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|118430995|ref|NP_147145.2| - 4.9e-07 29.8 20.9 0.00017 21.7 1.8 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|118430995|ref|NP_147145.2| - 2.9e-06 27.1 3.4 2.9e-06 27.1 3.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|118430995|ref|NP_147145.2| - 0.0001 23.0 13.4 0.00069 20.4 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|118430995|ref|NP_147145.2| - 0.00091 19.9 13.4 0.058 14.1 13.4 2.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.6 gi|118430995|ref|NP_147145.2| - 0.0019 18.3 4.2 0.034 14.2 3.6 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|118430995|ref|NP_147145.2| - 0.0019 18.7 17.2 0.0047 17.4 14.7 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|118430995|ref|NP_147145.2| - 0.0023 18.3 3.3 0.0023 18.3 3.3 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|118430995|ref|NP_147145.2| - 0.0034 17.9 11.4 0.026 15.1 1.7 2.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|118430995|ref|NP_147145.2| - 0.0081 16.6 11.6 2 9.0 11.1 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|118430995|ref|NP_147145.2| - 0.1 13.5 0.5 0.1 13.5 0.5 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|118430995|ref|NP_147145.2| - 2 8.7 11.1 8.7 6.6 10.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Plant_NMP1 PF06694.11 gi|118430996|ref|NP_147146.2| - 0.01 15.0 0.1 0.012 14.7 0.1 1.1 1 0 0 1 1 1 0 Plant nuclear matrix protein 1 (NMP1) DUF3782 PF12644.7 gi|118430996|ref|NP_147146.2| - 0.012 15.7 1.2 0.035 14.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) DUF1664 PF07889.12 gi|118430996|ref|NP_147146.2| - 0.045 13.8 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Mis14 PF08641.12 gi|118430996|ref|NP_147146.2| - 0.052 13.9 0.0 0.072 13.4 0.0 1.3 1 0 0 1 1 1 0 Kinetochore protein Mis14 like Halo_GVPC PF05465.13 gi|118430996|ref|NP_147146.2| - 0.069 13.4 2.8 0.23 11.7 0.1 2.8 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat PqqD PF05402.12 gi|118430996|ref|NP_147146.2| - 0.074 13.4 0.7 1.1 9.6 0.4 2.2 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Helicase_C_2 PF13307.6 gi|118430997|ref|NP_147147.2| - 1.9e-22 80.2 0.0 3.6e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|118430997|ref|NP_147147.2| - 7.9e-13 48.4 0.0 1.2e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 HBB PF06777.11 gi|118430997|ref|NP_147147.2| - 1e-05 25.3 0.0 2.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 gi|118430997|ref|NP_147147.2| - 0.0017 18.1 0.0 0.02 14.6 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|118430997|ref|NP_147147.2| - 0.036 14.0 0.0 0.58 10.1 0.0 2.4 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit Cas_APE2256 PF09651.10 gi|118430997|ref|NP_147147.2| - 0.15 12.0 0.1 16 5.4 0.0 3.0 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_APE2256) DUF5518 PF17647.1 gi|14600632|ref|NP_147149.1| - 2.8e-07 30.7 39.3 3.4e-07 30.4 39.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) EI24 PF07264.11 gi|14600632|ref|NP_147149.1| - 8.1 6.6 22.2 22 5.2 21.1 1.8 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) TIP49 PF06068.13 gi|118430998|ref|NP_147150.2| - 1.8e-141 471.4 0.1 2.6e-141 470.9 0.1 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|118430998|ref|NP_147150.2| - 4.2e-27 94.1 1.7 9.9e-27 92.9 1.2 1.9 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|118430998|ref|NP_147150.2| - 1.4e-10 41.7 0.7 4.1e-08 33.7 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|118430998|ref|NP_147150.2| - 3.6e-09 37.2 3.1 1.3e-06 28.9 0.1 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|118430998|ref|NP_147150.2| - 3.2e-08 34.0 0.2 0.014 15.7 0.0 3.0 3 2 0 3 3 2 2 AAA domain RuvB_N PF05496.12 gi|118430998|ref|NP_147150.2| - 2.9e-07 30.3 2.9 9.8e-06 25.4 0.0 2.7 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_17 PF13207.6 gi|118430998|ref|NP_147150.2| - 0.00024 21.5 0.1 0.001 19.5 0.0 2.2 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|118430998|ref|NP_147150.2| - 0.00087 19.1 0.1 0.0019 17.9 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|118430998|ref|NP_147150.2| - 0.0016 19.0 0.1 0.0088 16.6 0.0 2.4 3 0 0 3 3 2 1 AAA domain Sigma54_activat PF00158.26 gi|118430998|ref|NP_147150.2| - 0.0021 17.8 0.1 0.0075 16.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|118430998|ref|NP_147150.2| - 0.0023 17.9 0.1 0.011 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|118430998|ref|NP_147150.2| - 0.0049 17.0 0.1 0.02 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|118430998|ref|NP_147150.2| - 0.0051 16.4 0.2 0.017 14.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.21 gi|118430998|ref|NP_147150.2| - 0.0059 16.0 0.6 0.013 14.9 0.2 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|118430998|ref|NP_147150.2| - 0.0083 16.1 0.0 0.029 14.3 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|118430998|ref|NP_147150.2| - 0.0087 16.3 1.5 0.016 15.4 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_32 PF13654.6 gi|118430998|ref|NP_147150.2| - 0.022 13.5 0.2 4 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|118430998|ref|NP_147150.2| - 0.025 13.9 0.0 0.055 12.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|118430998|ref|NP_147150.2| - 0.027 13.8 0.1 0.065 12.6 0.1 1.6 1 0 0 1 1 1 0 KaiC DUF2075 PF09848.9 gi|118430998|ref|NP_147150.2| - 0.028 13.7 0.1 0.093 12.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) IPT PF01745.16 gi|118430998|ref|NP_147150.2| - 0.034 13.5 0.0 0.086 12.2 0.0 1.6 1 0 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.16 gi|118430998|ref|NP_147150.2| - 0.036 13.5 0.0 0.073 12.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|118430998|ref|NP_147150.2| - 0.055 13.5 0.0 0.6 10.1 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|118430998|ref|NP_147150.2| - 0.06 13.7 0.4 0.26 11.6 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|118430998|ref|NP_147150.2| - 0.064 12.8 0.1 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_11 PF13086.6 gi|118430998|ref|NP_147150.2| - 0.075 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|118430998|ref|NP_147150.2| - 0.092 12.5 0.1 0.42 10.3 0.0 2.1 3 0 0 3 3 3 0 AAA domain SUKH-4 PF14435.6 gi|118430998|ref|NP_147150.2| - 0.12 12.5 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 SUKH-4 immunity protein SRP54 PF00448.22 gi|118430998|ref|NP_147150.2| - 0.12 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|118430998|ref|NP_147150.2| - 0.15 12.5 0.0 0.28 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|118430998|ref|NP_147150.2| - 0.16 12.5 0.0 0.36 11.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|118430998|ref|NP_147150.2| - 0.3 10.8 2.4 0.42 10.3 0.4 2.3 2 1 0 2 2 2 0 AAA domain DUF4349 PF14257.6 gi|118430999|ref|NP_147152.2| - 0.03 13.8 3.2 0.064 12.7 0.3 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4349) Sec16 PF12932.7 gi|118430999|ref|NP_147152.2| - 0.12 13.0 0.2 0.38 11.3 0.0 1.8 2 1 0 2 2 2 0 Vesicle coat trafficking protein Sec16 mid-region DUF1192 PF06698.11 gi|118430999|ref|NP_147152.2| - 2.7 8.1 6.5 7.2 6.8 0.1 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF1192) Lactamase_B PF00753.27 gi|118431000|ref|NP_147153.2| - 5.9e-29 101.5 2.5 9e-29 100.9 2.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|118431000|ref|NP_147153.2| - 1.3e-06 28.0 0.1 3.4e-06 26.7 0.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain dUTPase PF00692.19 gi|118431001|ref|NP_147155.2| - 7e-16 58.1 0.0 9.6e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|118431001|ref|NP_147155.2| - 2.9e-06 26.3 0.0 0.00012 21.0 0.0 2.9 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AOC_like PF18678.1 gi|118431001|ref|NP_147155.2| - 0.044 13.4 0.2 0.52 9.9 0.1 2.0 2 0 0 2 2 2 0 Allene oxide cyclase barrel like domain DUF2545 PF10810.8 gi|14600639|ref|NP_147156.1| - 0.023 14.9 1.9 0.042 14.0 1.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2545) Penicil_amidase PF01804.18 gi|118431002|ref|NP_147157.2| - 6.2e-154 514.6 0.0 7.7e-154 514.2 0.0 1.0 1 0 0 1 1 1 1 Penicillin amidase Peptidase_M19 PF01244.21 gi|118431003|ref|NP_147158.2| - 6.2e-69 232.6 0.0 6.9e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|118431003|ref|NP_147158.2| - 0.00021 21.2 0.1 0.00031 20.6 0.1 1.3 1 0 0 1 1 1 1 Amidohydrolase Tic110 PF16940.5 gi|118431003|ref|NP_147158.2| - 0.15 10.5 0.1 0.21 10.1 0.1 1.1 1 0 0 1 1 1 0 Chloroplast envelope transporter Beta-lactamase PF00144.24 gi|118431004|ref|NP_147159.2| - 5.9e-60 203.2 0.7 8.7e-60 202.7 0.7 1.3 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|118431004|ref|NP_147159.2| - 1e-05 25.5 0.0 2.4e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Pab87 octamerisation domain Glyco_hydro_130 PF04041.13 gi|118431005|ref|NP_147160.2| - 5e-119 397.0 0.0 6.1e-119 396.7 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase GHL6 PF14871.6 gi|118431006|ref|NP_147161.2| - 4e-45 153.3 0.0 1.5e-44 151.5 0.0 2.0 2 0 0 2 2 2 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.10 gi|118431006|ref|NP_147161.2| - 0.0003 20.3 0.1 0.0021 17.6 0.0 2.2 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain ThuA PF06283.11 gi|118431006|ref|NP_147161.2| - 0.0017 18.6 0.0 0.0057 16.9 0.0 1.9 1 0 0 1 1 1 1 Trehalose utilisation DUF4015 PF13200.6 gi|118431006|ref|NP_147161.2| - 0.03 13.4 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain ABC_transp_aux PF09822.9 gi|118431006|ref|NP_147161.2| - 0.078 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system PHP PF02811.19 gi|118431006|ref|NP_147161.2| - 0.14 12.5 0.0 1.3 9.3 0.0 2.2 2 0 0 2 2 2 0 PHP domain 4HBT PF03061.22 gi|118431007|ref|NP_147163.2| - 8.5e-13 48.5 4.0 2.2e-08 34.3 1.1 2.4 2 0 0 2 2 2 2 Thioesterase superfamily Ribosomal_L27A PF00828.19 gi|14600647|ref|NP_147164.1| - 8.4e-18 65.3 0.2 1.1e-17 64.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|118431008|ref|NP_147166.2| - 1.1e-12 47.6 0.0 2.3e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|14600650|ref|NP_147167.1| - 4.9e-26 90.5 1.1 4.9e-26 90.5 1.1 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|14600650|ref|NP_147167.1| - 9.7e-24 82.6 0.0 1.8e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|14600651|ref|NP_147168.1| - 9e-34 116.8 1.3 1.9e-21 76.7 0.3 2.8 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|14600651|ref|NP_147168.1| - 1.3e-09 38.8 0.4 2.1e-09 38.2 0.4 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|14600651|ref|NP_147168.1| - 4.7e-05 23.7 0.6 7.5e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DUF1390 PF07150.11 gi|14600651|ref|NP_147168.1| - 0.057 13.1 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1390) Ribosomal_L19e PF01280.20 gi|14600652|ref|NP_147169.1| - 1.9e-50 170.7 7.2 2.1e-50 170.5 7.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|14600653|ref|NP_147170.1| - 5.4e-34 116.9 0.1 7.2e-34 116.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 MTES_1575 PF18741.1 gi|14600653|ref|NP_147170.1| - 0.023 14.8 1.7 0.04 14.1 1.7 1.5 1 0 0 1 1 1 0 REase_MTES_1575 Ribosomal_L6 PF00347.23 gi|14600654|ref|NP_147171.1| - 4e-33 113.9 7.6 1e-17 64.6 0.5 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|118431009|ref|NP_147172.2| - 9.8e-28 96.6 0.0 1.2e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|118431010|ref|YP_874816.1| - 7.8e-12 44.8 5.3 8.7e-12 44.6 5.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|118431010|ref|YP_874816.1| - 0.0021 17.9 2.7 0.003 17.4 2.7 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|118431010|ref|YP_874816.1| - 0.0034 17.4 0.3 0.0043 17.1 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|118431010|ref|YP_874816.1| - 0.033 14.2 0.4 0.034 14.2 0.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf_UBZ PF18439.1 gi|118431010|ref|YP_874816.1| - 0.15 11.7 0.9 9.9 5.9 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_L5_C PF00673.21 gi|118431011|ref|NP_147174.2| - 1.7e-23 82.6 0.0 3e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|118431011|ref|NP_147174.2| - 3e-21 75.5 0.3 5.6e-21 74.6 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 V-SNARE_C PF12352.8 gi|118431011|ref|NP_147174.2| - 0.032 14.5 0.0 0.065 13.5 0.0 1.5 1 0 0 1 1 1 0 Snare region anchored in the vesicle membrane C-terminus GP68 PF17469.2 gi|118431011|ref|NP_147174.2| - 0.042 14.3 0.1 0.1 13.0 0.1 1.6 1 0 0 1 1 1 0 Phage protein Gp68 Ribosomal_S4e PF00900.20 gi|118431012|ref|NP_147175.2| - 3.3e-24 84.6 0.0 5.1e-24 84.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|118431012|ref|NP_147175.2| - 2e-15 56.6 3.4 3.1e-15 56.0 3.4 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|118431012|ref|NP_147175.2| - 2.5e-15 55.9 0.3 2.3e-14 52.8 0.0 2.4 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|118431012|ref|NP_147175.2| - 9.7e-06 25.1 0.0 1.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|118431012|ref|NP_147175.2| - 0.0025 17.7 2.3 0.0075 16.2 2.3 1.9 1 0 0 1 1 1 1 KOW motif Ribosomal_L26 PF16906.5 gi|14600658|ref|NP_147176.1| - 1.7e-34 118.1 0.4 2.2e-34 117.7 0.4 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|14600658|ref|NP_147176.1| - 2.7e-09 36.6 3.5 2.7e-09 36.6 3.5 1.8 2 0 0 2 2 2 1 KOW motif ribosomal_L24 PF17136.4 gi|14600658|ref|NP_147176.1| - 0.12 12.8 0.5 2.7 8.5 0.0 2.6 2 1 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ribosomal_L14 PF00238.19 gi|14600659|ref|NP_147177.1| - 1.3e-38 131.8 0.2 1.5e-38 131.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|14600659|ref|NP_147177.1| - 0.076 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.20 gi|118431013|ref|NP_147178.2| - 6.6e-23 80.6 2.8 8.6e-23 80.2 2.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.16 gi|14600661|ref|NP_147179.1| - 5.4e-13 48.7 0.0 6.5e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|118431014|ref|YP_874817.1| - 6.6e-21 74.0 2.6 7.8e-21 73.8 2.6 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein PASTA PF03793.19 gi|118431014|ref|YP_874817.1| - 0.035 13.9 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 PASTA domain DUF1192 PF06698.11 gi|118431014|ref|YP_874817.1| - 0.18 11.9 1.9 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ribosomal_S3_C PF00189.20 gi|14600662|ref|NP_147181.1| - 3.6e-25 88.3 1.0 9.8e-25 86.9 0.9 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|14600662|ref|NP_147181.1| - 1.6e-11 43.9 0.2 9.2e-11 41.4 0.0 2.3 3 0 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|14600662|ref|NP_147181.1| - 0.014 15.3 0.1 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 KH domain KH_1 PF00013.29 gi|14600662|ref|NP_147181.1| - 0.026 14.4 6.6 0.033 14.0 0.2 3.2 3 1 1 4 4 4 0 KH domain Ribosomal_L22 PF00237.19 gi|14600663|ref|NP_147182.1| - 1.4e-29 102.3 0.9 1.7e-29 102.1 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DinB_2 PF12867.7 gi|14600663|ref|NP_147182.1| - 0.14 12.7 1.0 0.67 10.5 0.1 2.1 1 1 2 3 3 3 0 DinB superfamily Ribosomal_S19 PF00203.21 gi|118431015|ref|NP_147183.2| - 6.5e-33 112.5 0.0 8.5e-33 112.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 FA PF08736.11 gi|118431015|ref|NP_147183.2| - 0.015 15.4 1.8 0.032 14.3 0.1 2.1 2 0 0 2 2 2 0 FERM adjacent (FA) VWA_CoxE PF05762.14 gi|14600666|ref|NP_147185.1| - 1.2e-15 57.6 2.5 2.8e-15 56.3 2.5 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_lid_2 PF17863.1 gi|14600666|ref|NP_147185.1| - 0.00011 22.0 0.4 0.00053 19.8 0.4 2.2 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|118431016|ref|NP_147187.2| - 3.7e-19 69.1 0.0 6.4e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|118431016|ref|NP_147187.2| - 3.8e-08 33.1 1.9 1e-07 31.7 1.9 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_3 PF07726.11 gi|118431016|ref|NP_147187.2| - 0.00018 21.4 0.0 0.0023 17.8 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|118431016|ref|NP_147187.2| - 0.0002 21.9 0.0 0.00036 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118431016|ref|NP_147187.2| - 0.0002 21.8 0.1 0.0013 19.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|118431016|ref|NP_147187.2| - 0.00084 19.1 0.0 0.94 9.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_30 PF13604.6 gi|118431016|ref|NP_147187.2| - 0.0049 16.6 0.0 0.015 15.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|118431016|ref|NP_147187.2| - 0.0063 15.9 0.0 0.53 9.6 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Baculo_RING PF05883.11 gi|118431016|ref|NP_147187.2| - 0.009 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Baculovirus U-box/Ring-like domain AAA_7 PF12775.7 gi|118431016|ref|NP_147187.2| - 0.013 15.0 0.0 0.064 12.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|118431016|ref|NP_147187.2| - 0.022 15.1 0.0 0.043 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain TIP49 PF06068.13 gi|118431016|ref|NP_147187.2| - 0.029 13.6 0.0 0.084 12.1 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_2 PF07724.14 gi|118431016|ref|NP_147187.2| - 0.037 14.1 0.0 0.082 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.6 gi|118431016|ref|NP_147187.2| - 0.047 14.0 0.1 0.7 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|118431016|ref|NP_147187.2| - 0.073 12.8 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|118431016|ref|NP_147187.2| - 0.14 11.8 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|118431016|ref|NP_147187.2| - 0.16 11.8 0.0 0.4 10.6 0.0 1.8 1 1 0 1 1 1 0 NACHT domain MCM_lid PF17855.1 gi|118431016|ref|NP_147187.2| - 0.17 12.3 0.6 0.43 11.0 0.6 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain PDDEXK_1 PF12705.7 gi|14600669|ref|NP_147188.1| - 4.2e-14 53.1 0.1 5.8e-07 29.7 0.0 2.2 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|14600669|ref|NP_147188.1| - 1.9e-05 24.8 0.0 2.5e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 tRNA-synt_1 PF00133.22 gi|14600670|ref|NP_147189.1| - 3.8e-178 593.5 0.0 5.1e-178 593.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|14600670|ref|NP_147189.1| - 3.5e-29 101.7 1.0 7.2e-29 100.7 1.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|14600670|ref|NP_147189.1| - 1e-22 80.4 0.1 6e-08 31.8 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|14600670|ref|NP_147189.1| - 9.2e-05 21.9 0.0 0.079 12.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|14600670|ref|NP_147189.1| - 0.012 14.5 0.0 0.052 12.5 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-TFIIB PF13453.6 gi|14600670|ref|NP_147189.1| - 0.015 14.6 0.8 9.9 5.6 0.0 3.3 3 0 0 3 3 3 0 Transcription factor zinc-finger tRNA-synt_1_2 PF13603.6 gi|14600670|ref|NP_147189.1| - 0.044 13.3 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 Mu-like_Com PF10122.9 gi|14600670|ref|NP_147189.1| - 0.13 11.7 1.2 0.95 9.0 0.1 2.7 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-IS66 PF13005.7 gi|14600670|ref|NP_147189.1| - 0.63 10.5 3.5 10 6.6 0.2 3.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|14600670|ref|NP_147189.1| - 0.93 9.7 5.3 1.1 9.4 1.9 2.7 2 1 0 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|14600670|ref|NP_147189.1| - 3.9 7.4 11.9 4.7 7.2 0.2 3.6 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS ACT PF01842.25 gi|14602188|ref|NP_147191.1| - 1.3e-08 34.4 0.1 2.5e-08 33.5 0.1 1.5 1 0 0 1 1 1 1 ACT domain MraZ PF02381.18 gi|14602188|ref|NP_147191.1| - 2.7e-05 24.1 0.0 4.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 gi|14602188|ref|NP_147191.1| - 4.3e-05 23.3 0.2 7.5e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ACT_6 PF13740.6 gi|14602188|ref|NP_147191.1| - 6.8e-05 22.8 0.1 0.00014 21.8 0.1 1.6 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|14602188|ref|NP_147191.1| - 0.0023 18.5 0.0 0.0043 17.6 0.0 1.5 1 0 0 1 1 1 1 ACT domain CDC48_N PF02359.18 gi|14602188|ref|NP_147191.1| - 0.015 15.5 0.2 0.14 12.4 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain ACT_7 PF13840.6 gi|14602188|ref|NP_147191.1| - 0.048 13.5 0.1 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 ACT domain PrlF_antitoxin PF15937.5 gi|14602188|ref|NP_147191.1| - 0.06 13.8 0.0 0.11 13.0 0.0 1.5 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin Lactamase_B PF00753.27 gi|14600672|ref|NP_147192.1| - 2.5e-18 66.8 0.1 3.1e-18 66.5 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CBS PF00571.28 gi|118431018|ref|NP_147193.2| - 2.8e-32 110.9 3.4 3e-15 56.4 0.1 2.1 2 0 0 2 2 2 2 CBS domain Acyl-CoA_dh_1 PF00441.24 gi|118431019|ref|NP_147195.2| - 3.8e-40 137.5 1.7 6.7e-40 136.7 1.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|118431019|ref|NP_147195.2| - 2.3e-17 63.0 0.1 5.1e-17 61.9 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|118431019|ref|NP_147195.2| - 1.7e-08 34.9 2.0 3.5e-08 33.8 0.2 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 gi|118431019|ref|NP_147195.2| - 4.8e-08 33.1 0.1 2.7e-07 30.6 0.0 2.1 2 0 0 2 2 2 1 Adaptive response protein AidB N-terminal domain DUF4142 PF13628.6 gi|118431019|ref|NP_147195.2| - 0.026 14.8 0.3 0.051 13.8 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) PrmC_N PF17827.1 gi|118431019|ref|NP_147195.2| - 0.057 14.0 0.3 0.59 10.8 0.1 2.3 2 0 0 2 2 2 0 PrmC N-terminal domain DUF4798 PF16055.5 gi|118431019|ref|NP_147195.2| - 0.13 12.5 0.1 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4798) Acetyltransf_1 PF00583.25 gi|14600676|ref|NP_147196.1| - 7.2e-15 55.3 0.1 8.8e-15 55.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|14600676|ref|NP_147196.1| - 1.3e-10 41.6 0.1 2.1e-10 40.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|14600676|ref|NP_147196.1| - 4.5e-10 39.6 0.1 5.5e-10 39.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|14600676|ref|NP_147196.1| - 1.2e-07 31.8 0.1 1.6e-07 31.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|14600676|ref|NP_147196.1| - 3e-07 30.3 0.1 4.7e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|14600676|ref|NP_147196.1| - 0.00045 20.4 0.2 0.00054 20.1 0.2 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|14600676|ref|NP_147196.1| - 0.00058 19.9 0.0 0.00093 19.3 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|14600676|ref|NP_147196.1| - 0.018 14.7 0.1 0.032 14.0 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 gi|14600676|ref|NP_147196.1| - 0.025 15.3 0.0 0.029 15.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|14600676|ref|NP_147196.1| - 0.043 14.0 0.3 0.071 13.3 0.3 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|14600677|ref|NP_147197.1| - 1.8e-16 60.5 0.4 2.4e-16 60.0 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|14600677|ref|NP_147197.1| - 1.8e-12 47.5 0.2 2.9e-12 46.8 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|14600677|ref|NP_147197.1| - 1.1e-10 41.6 0.1 1.5e-10 41.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|14600677|ref|NP_147197.1| - 9.6e-08 31.9 0.3 3.7e-07 30.0 0.0 1.8 1 1 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|14600677|ref|NP_147197.1| - 0.0001 22.3 0.0 0.00012 22.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|14600677|ref|NP_147197.1| - 0.00019 21.6 0.0 0.00022 21.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|14600677|ref|NP_147197.1| - 0.0087 15.8 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|14600677|ref|NP_147197.1| - 0.047 13.8 0.0 0.096 12.8 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Rota_VP2 PF05087.12 gi|14600677|ref|NP_147197.1| - 0.08 11.1 0.0 0.095 10.8 0.0 1.0 1 0 0 1 1 1 0 Rotavirus VP2 protein Acetyltransf_8 PF13523.6 gi|14600677|ref|NP_147197.1| - 0.13 12.0 0.1 0.36 10.5 0.1 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Malic_M PF03949.15 gi|14600678|ref|NP_147198.1| - 2.5e-27 95.8 0.0 1.1e-25 90.4 0.0 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|14600678|ref|NP_147198.1| - 6e-20 71.8 0.0 2.5e-14 53.5 0.0 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain AMP-binding PF00501.28 gi|118431020|ref|NP_147199.2| - 8.4e-100 334.3 0.1 1.1e-99 334.0 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|118431020|ref|NP_147199.2| - 1.6e-22 80.2 0.5 3.8e-22 79.0 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AA_kinase PF00696.28 gi|118431022|ref|NP_147201.2| - 3.1e-21 76.1 0.0 7.1e-21 74.9 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family DUF2721 PF11026.8 gi|118431023|ref|YP_874819.1| - 0.93 9.4 8.3 4.1 7.3 8.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) ATP-synt_D PF01813.17 gi|118431024|ref|NP_147203.2| - 2e-39 135.4 4.5 2.3e-39 135.3 4.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D AAA_31 PF13614.6 gi|118431024|ref|NP_147203.2| - 0.063 13.2 0.2 3.6 7.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain CorA PF01544.18 gi|118431024|ref|NP_147203.2| - 0.08 12.2 3.6 1 8.6 0.6 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein GPAT_N PF14829.6 gi|118431024|ref|NP_147203.2| - 0.89 9.6 4.4 1.1 9.3 0.6 2.8 2 2 1 3 3 3 0 Glycerol-3-phosphate acyltransferase N-terminal ATP-synt_ab PF00006.25 gi|118431025|ref|NP_147204.2| - 2.2e-68 230.1 0.0 3e-68 229.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|118431025|ref|NP_147204.2| - 1.5e-12 47.9 4.7 4.1e-12 46.4 4.7 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt_ab PF00006.25 gi|118431026|ref|NP_147205.2| - 4.2e-92 307.6 0.0 5.6e-92 307.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|118431026|ref|NP_147205.2| - 2.4e-41 140.4 0.0 4.9e-41 139.4 0.0 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|118431026|ref|NP_147205.2| - 1.7e-15 57.3 1.1 4.6e-15 55.9 1.1 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|118431026|ref|NP_147205.2| - 0.079 13.2 0.5 0.31 11.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain vATP-synt_E PF01991.18 gi|118431027|ref|NP_147206.2| - 2.2e-07 30.5 7.5 8.4e-07 28.6 7.4 1.9 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ERAP1_C PF11838.8 gi|118431027|ref|NP_147206.2| - 0.00045 19.9 0.1 0.00052 19.6 0.1 1.1 1 0 0 1 1 1 1 ERAP1-like C-terminal domain AAA_32 PF13654.6 gi|118431027|ref|NP_147206.2| - 0.03 13.1 2.7 0.04 12.7 2.7 1.1 1 0 0 1 1 1 0 AAA domain GvpL_GvpF PF06386.11 gi|118431027|ref|NP_147206.2| - 0.042 13.8 5.0 0.072 13.0 5.0 1.5 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF T3SSipB PF16535.5 gi|118431027|ref|NP_147206.2| - 0.046 14.2 0.6 0.063 13.8 0.6 1.2 1 0 0 1 1 1 0 Type III cell invasion protein SipB DUF3135 PF11333.8 gi|118431027|ref|NP_147206.2| - 0.067 13.5 0.4 7 7.0 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3135) Caudo_TAP PF02413.17 gi|118431027|ref|NP_147206.2| - 0.18 11.9 1.0 0.37 10.9 1.0 1.5 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein, lambda gpK DUF883 PF05957.13 gi|118431027|ref|NP_147206.2| - 0.19 12.3 8.1 0.36 11.5 6.7 2.0 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2309 PF10070.9 gi|118431027|ref|NP_147206.2| - 0.71 8.1 3.4 3.1 6.0 1.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2309) ATP-synt_B PF00430.18 gi|118431027|ref|NP_147206.2| - 8.6 6.5 14.1 3 7.9 10.9 1.8 2 1 0 2 2 2 0 ATP synthase B/B' CF(0) ATP-synt_F PF01990.17 gi|118431028|ref|NP_147207.2| - 8.8e-09 35.6 0.2 1e-08 35.4 0.2 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF1611_N PF17396.2 gi|118431028|ref|NP_147207.2| - 0.11 12.7 0.1 0.15 12.3 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain Pyridoxal_deC PF00282.19 gi|14600688|ref|NP_147208.1| - 6.5e-16 58.0 0.0 2.7e-15 56.0 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|14600688|ref|NP_147208.1| - 3e-06 26.5 0.0 4.2e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|14600688|ref|NP_147208.1| - 0.1 11.3 0.0 0.22 10.2 0.0 1.5 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain DUF3883 PF13020.6 gi|14600689|ref|NP_147209.1| - 1.8e-17 63.2 1.0 5.3e-17 61.7 1.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Helicase_C PF00271.31 gi|14600689|ref|NP_147209.1| - 4.2e-14 52.8 0.0 1.9e-13 50.7 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|14600689|ref|NP_147209.1| - 8.8e-12 45.4 0.0 1.9e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|14600689|ref|NP_147209.1| - 1.1e-11 44.0 0.1 4.2e-11 42.2 0.1 1.9 1 1 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|14600689|ref|NP_147209.1| - 5.9e-05 22.9 0.0 0.00027 20.7 0.0 2.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|14600689|ref|NP_147209.1| - 0.025 13.8 0.0 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Apolipoprotein PF01442.18 gi|14600689|ref|NP_147209.1| - 0.084 12.7 1.5 1.8 8.4 0.2 2.4 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain ERCC3_RAD25_C PF16203.5 gi|14600689|ref|NP_147209.1| - 0.13 11.4 0.0 0.29 10.3 0.0 1.5 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF2573 PF10835.8 gi|14600689|ref|NP_147209.1| - 0.99 9.8 3.5 15 6.0 0.5 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2573) DUF499 PF04465.12 gi|14600691|ref|NP_147211.1| - 0 1195.6 21.7 0 1195.1 21.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.12 gi|118431030|ref|NP_147212.2| - 4e-10 39.6 0.0 1.1e-09 38.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.15 gi|118431030|ref|NP_147212.2| - 1.4e-07 31.3 0.0 0.0013 18.4 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|118431030|ref|NP_147212.2| - 0.00073 19.3 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|118431030|ref|NP_147212.2| - 0.13 11.9 0.0 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 DNA methylase MBD PF01429.19 gi|118431030|ref|NP_147212.2| - 0.21 11.3 0.4 1.4 8.7 0.0 2.4 3 0 0 3 3 3 0 Methyl-CpG binding domain RHH_1 PF01402.21 gi|118431032|ref|NP_147214.2| - 4.6e-11 42.2 0.5 5.9e-11 41.9 0.5 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|118431032|ref|NP_147214.2| - 0.00046 20.7 0.1 0.00053 20.5 0.1 1.1 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system HicB_lk_antitox PF15919.5 gi|118431032|ref|NP_147214.2| - 0.0047 17.0 0.1 0.0049 17.0 0.1 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RepB-RCR_reg PF10723.9 gi|118431032|ref|NP_147214.2| - 0.048 13.6 0.1 0.052 13.5 0.1 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB DZR PF12773.7 gi|118431033|ref|YP_874821.1| - 6.1e-05 23.0 1.9 0.17 11.9 0.1 2.1 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_10 PF10058.9 gi|118431033|ref|YP_874821.1| - 0.00012 21.8 0.8 0.00012 21.8 0.8 1.9 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein zf-Sec23_Sec24 PF04810.15 gi|118431033|ref|YP_874821.1| - 0.00054 19.9 5.5 0.13 12.3 2.3 2.5 2 1 0 2 2 2 2 Sec23/Sec24 zinc finger Desulfoferrod_N PF06397.12 gi|118431033|ref|YP_874821.1| - 0.0016 18.0 1.5 0.37 10.4 0.0 2.9 3 0 0 3 3 3 1 Desulfoferrodoxin, N-terminal domain zf-BED PF02892.15 gi|118431033|ref|YP_874821.1| - 0.0018 18.3 0.2 1.2 9.3 0.0 2.3 2 0 0 2 2 2 2 BED zinc finger HypA PF01155.19 gi|118431033|ref|YP_874821.1| - 0.0031 17.5 1.4 0.14 12.2 1.4 2.1 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|118431033|ref|YP_874821.1| - 0.0053 16.7 1.2 0.065 13.2 1.2 2.4 1 1 0 1 1 1 1 zinc-ribbons zf-ribbon_3 PF13248.6 gi|118431033|ref|YP_874821.1| - 0.0077 15.6 4.8 0.26 10.8 0.1 3.2 3 0 0 3 3 3 1 zinc-ribbon domain Elf1 PF05129.13 gi|118431033|ref|YP_874821.1| - 0.0094 16.0 3.8 3.2 7.9 0.1 3.0 1 1 1 3 3 3 1 Transcription elongation factor Elf1 like zf-C2HC5 PF06221.13 gi|118431033|ref|YP_874821.1| - 0.011 15.7 1.7 0.039 13.9 0.6 2.1 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_SprT PF17283.2 gi|118431033|ref|YP_874821.1| - 0.02 14.8 10.7 0.64 10.0 6.5 3.1 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-H2C2_2 PF13465.6 gi|118431033|ref|YP_874821.1| - 0.02 15.3 3.2 6.9 7.3 0.3 3.1 3 0 0 3 3 3 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.12 gi|118431033|ref|YP_874821.1| - 0.035 13.6 7.0 0.18 11.3 3.2 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding Nop10p PF04135.12 gi|118431033|ref|YP_874821.1| - 0.035 14.1 1.9 1.4 9.0 0.0 2.7 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Zn-ribbon_8 PF09723.10 gi|118431033|ref|YP_874821.1| - 0.04 14.0 7.9 0.25 11.5 4.2 2.5 1 1 2 3 3 3 0 Zinc ribbon domain Ribosomal_S27e PF01667.17 gi|118431033|ref|YP_874821.1| - 0.043 13.5 5.9 0.44 10.3 0.3 2.7 2 1 1 3 3 3 0 Ribosomal protein S27 zf-IS66 PF13005.7 gi|118431033|ref|YP_874821.1| - 0.044 14.2 4.0 11 6.5 0.0 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF1272 PF06906.11 gi|118431033|ref|YP_874821.1| - 0.094 12.8 4.9 2.2 8.4 4.9 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-Di19 PF05605.12 gi|118431033|ref|YP_874821.1| - 0.1 12.9 4.3 1.4 9.3 0.1 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|118431033|ref|YP_874821.1| - 0.13 12.3 11.1 1.8 8.6 0.2 3.0 1 1 2 3 3 3 0 Transposase zinc-ribbon domain C1_4 PF07975.12 gi|118431033|ref|YP_874821.1| - 0.14 12.4 5.3 3.4 8.0 1.6 2.8 1 1 2 3 3 3 0 TFIIH C1-like domain zf-HIT PF04438.16 gi|118431033|ref|YP_874821.1| - 0.16 11.9 14.1 4.5 7.2 1.8 3.2 2 1 1 3 3 3 0 HIT zinc finger Lar_restr_allev PF14354.6 gi|118431033|ref|YP_874821.1| - 0.27 11.6 0.1 0.27 11.6 0.1 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar C1_2 PF03107.16 gi|118431033|ref|YP_874821.1| - 0.28 11.5 5.4 65 4.0 5.4 2.6 1 1 0 1 1 1 0 C1 domain zf-AN1 PF01428.16 gi|118431033|ref|YP_874821.1| - 0.3 11.3 6.3 12 6.1 0.4 3.0 2 1 1 3 3 3 0 AN1-like Zinc finger zinc_ribbon_4 PF13717.6 gi|118431033|ref|YP_874821.1| - 0.48 10.4 8.3 9 6.3 0.1 3.0 2 1 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|118431033|ref|YP_874821.1| - 0.48 10.5 0.2 0.48 10.5 0.2 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain PyrI_C PF02748.15 gi|118431033|ref|YP_874821.1| - 0.48 10.4 3.5 1.5 8.8 0.4 2.4 2 1 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF2757 PF10955.8 gi|118431033|ref|YP_874821.1| - 0.68 10.2 4.6 13 6.1 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2757) zf-ISL3 PF14690.6 gi|118431033|ref|YP_874821.1| - 0.84 10.4 7.3 11 6.7 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|118431033|ref|YP_874821.1| - 0.95 9.3 9.7 2.3 8.1 0.2 3.5 3 1 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|118431033|ref|YP_874821.1| - 1.9 8.7 4.7 5.5 7.2 2.6 2.3 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.6 gi|118431033|ref|YP_874821.1| - 2.6 9.1 7.7 28 5.9 0.2 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|118431033|ref|YP_874821.1| - 3.4 7.3 4.7 22 4.8 0.2 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-C3HC4_3 PF13920.6 gi|118431033|ref|YP_874821.1| - 5.3 7.0 8.8 1.7e+02 2.2 8.8 2.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1 PF03811.13 gi|118431033|ref|YP_874821.1| - 5.5 6.8 12.3 8.5 6.2 0.4 3.3 2 1 1 3 3 3 0 InsA N-terminal domain Diphthami_syn_2 PF01902.17 gi|14600696|ref|NP_147216.1| - 2.3e-47 161.3 0.0 2.8e-47 161.0 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|14600696|ref|NP_147216.1| - 0.002 17.8 0.0 0.003 17.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Usp PF00582.26 gi|14600696|ref|NP_147216.1| - 0.039 14.5 0.1 0.064 13.8 0.1 1.4 1 0 0 1 1 1 0 Universal stress protein family QueC PF06508.13 gi|14600696|ref|NP_147216.1| - 0.075 12.5 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC TatD_DNase PF01026.21 gi|118431035|ref|NP_147217.2| - 2.6e-45 154.8 0.0 2.9e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|118431035|ref|NP_147217.2| - 0.11 11.8 0.0 0.73 9.1 0.0 2.0 2 0 0 2 2 2 0 Amidohydrolase family DUF5622 PF18533.1 gi|118431037|ref|YP_874823.1| - 2.5e-31 107.6 0.5 2.7e-31 107.5 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) Glycos_transf_2 PF00535.26 gi|118431038|ref|NP_147219.2| - 2.3e-30 105.7 0.0 3.3e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|118431038|ref|NP_147219.2| - 1.5e-20 73.6 5.5 2.4e-20 72.9 5.5 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|118431038|ref|NP_147219.2| - 1.2e-10 41.7 0.0 1.9e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|118431038|ref|NP_147219.2| - 0.00038 20.9 0.1 0.0078 16.6 0.0 2.5 2 1 0 2 2 2 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.6 gi|118431038|ref|NP_147219.2| - 0.16 11.4 0.0 0.35 10.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 21 UDG PF03167.19 gi|118431039|ref|NP_147220.2| - 3e-42 144.3 0.0 3.8e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lon_C PF05362.13 gi|118431040|ref|NP_147221.2| - 0.0056 16.2 0.3 0.023 14.3 0.3 1.8 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain DUF4296 PF14129.6 gi|118431040|ref|NP_147221.2| - 0.043 14.4 0.0 0.089 13.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) TPR_7 PF13176.6 gi|118431040|ref|NP_147221.2| - 0.068 13.2 0.0 13 6.1 0.0 3.2 2 0 0 2 2 2 0 Tetratricopeptide repeat MIT PF04212.18 gi|118431040|ref|NP_147221.2| - 0.11 12.6 0.1 0.44 10.6 0.1 2.0 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_14 PF13428.6 gi|118431040|ref|NP_147221.2| - 1.8 9.6 9.3 24 6.1 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat THP2 PF09432.10 gi|118431041|ref|NP_147222.2| - 0.1 12.7 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Tho complex subunit THP2 IstB_IS21 PF01695.17 gi|14600703|ref|NP_147223.1| - 0.00014 21.6 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|14600703|ref|NP_147223.1| - 0.001 18.8 0.0 0.0026 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|14600703|ref|NP_147223.1| - 0.0064 16.1 0.0 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|14600703|ref|NP_147223.1| - 0.0067 16.8 0.0 0.0079 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|14600703|ref|NP_147223.1| - 0.012 15.9 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|14600703|ref|NP_147223.1| - 0.037 14.1 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|14600703|ref|NP_147223.1| - 0.038 14.4 0.0 0.053 13.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|14600703|ref|NP_147223.1| - 0.042 13.4 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|14600703|ref|NP_147223.1| - 0.063 12.6 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|14600703|ref|NP_147223.1| - 0.12 12.7 0.0 0.18 12.2 0.0 1.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|14600703|ref|NP_147223.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 1 0 1 1 1 0 NTPase Sigma54_activat PF00158.26 gi|14600703|ref|NP_147223.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain ATPase PF06745.13 gi|14600703|ref|NP_147223.1| - 0.26 10.6 0.0 6.7 6.0 0.0 2.0 2 0 0 2 2 2 0 KaiC CarS-like PF01864.17 gi|14600705|ref|NP_147225.1| - 3.5e-42 144.3 2.1 1.1e-41 142.8 2.1 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|14600705|ref|NP_147225.1| - 9.4e-05 22.3 0.8 9.4e-05 22.3 0.8 1.8 2 0 0 2 2 2 1 Cytidylyltransferase family Shadoo PF14999.6 gi|14600705|ref|NP_147225.1| - 6.6 6.8 8.9 1.4 9.1 3.6 2.1 1 1 1 2 2 2 0 Shadow of prion protein, neuroprotective Nop10p PF04135.12 gi|118431042|ref|YP_874824.1| - 2.2e-22 78.9 1.3 2.3e-22 78.7 1.3 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|118431042|ref|YP_874824.1| - 0.0014 18.5 5.6 0.0014 18.5 5.6 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.15 gi|118431042|ref|YP_874824.1| - 0.011 15.3 0.4 0.016 14.8 0.4 1.2 1 0 0 1 1 1 0 RecR protein zf-FPG_IleRS PF06827.14 gi|118431042|ref|YP_874824.1| - 0.017 14.9 6.8 0.66 9.9 3.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L32p PF01783.23 gi|118431042|ref|YP_874824.1| - 0.028 14.7 1.0 0.041 14.2 1.0 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF1258 PF06869.12 gi|118431042|ref|YP_874824.1| - 0.071 12.6 0.1 0.091 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) HypA PF01155.19 gi|118431042|ref|YP_874824.1| - 0.22 11.5 0.4 0.29 11.2 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|118431042|ref|YP_874824.1| - 0.45 10.7 5.9 3.6 7.8 6.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|118431042|ref|YP_874824.1| - 0.99 9.0 4.1 25 4.5 4.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding EIF_2_alpha PF07541.12 gi|118431043|ref|NP_147227.2| - 1.3e-23 83.3 0.0 2.9e-23 82.2 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|118431043|ref|NP_147227.2| - 2.6e-13 50.1 0.6 6e-13 48.9 0.6 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Lsr2 PF11774.8 gi|118431043|ref|NP_147227.2| - 0.0065 16.6 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 Lsr2 Ribosomal_S10 PF00338.22 gi|118431043|ref|NP_147227.2| - 0.016 15.5 1.3 0.26 11.6 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S10p/S20e DUF2524 PF10732.9 gi|118431043|ref|NP_147227.2| - 0.12 12.7 0.3 1.7 9.0 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2524) cwf21 PF08312.12 gi|118431043|ref|NP_147227.2| - 0.13 12.5 0.2 4.8 7.4 0.0 3.3 4 0 0 4 4 4 0 cwf21 domain Ribosomal_S27e PF01667.17 gi|14600707|ref|NP_147228.1| - 5.3e-21 74.1 0.4 5.8e-21 73.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|14600707|ref|NP_147228.1| - 2.1e-05 23.9 1.7 2.8e-05 23.5 1.7 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|14600707|ref|NP_147228.1| - 0.00084 18.7 0.9 0.18 11.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF35_N PF12172.8 gi|14600707|ref|NP_147228.1| - 0.00092 19.0 0.4 1.4 8.9 0.0 2.3 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|14600707|ref|NP_147228.1| - 0.002 18.0 1.8 0.0028 17.6 1.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|14600707|ref|NP_147228.1| - 0.0023 18.3 0.3 0.0029 17.9 0.3 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TFIIS_C PF01096.18 gi|14600707|ref|NP_147228.1| - 0.003 17.4 2.9 0.13 12.2 2.9 2.1 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|14600707|ref|NP_147228.1| - 0.0031 17.2 0.6 0.69 9.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF3797 PF12677.7 gi|14600707|ref|NP_147228.1| - 0.0056 16.5 2.2 0.1 12.5 0.7 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) DZR PF12773.7 gi|14600707|ref|NP_147228.1| - 0.0061 16.6 0.2 0.0081 16.2 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|14600707|ref|NP_147228.1| - 0.011 15.6 0.9 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|14600707|ref|NP_147228.1| - 0.012 15.5 2.3 1.2 9.1 0.1 2.4 2 1 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|14600707|ref|NP_147228.1| - 0.015 15.3 0.1 0.019 15.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|14600707|ref|NP_147228.1| - 0.018 15.2 0.3 1.8 8.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain PADR1 PF08063.12 gi|14600707|ref|NP_147228.1| - 0.039 13.7 1.4 0.13 12.0 1.7 1.7 1 1 1 2 2 2 0 PADR1 (NUC008) domain OrfB_Zn_ribbon PF07282.11 gi|14600707|ref|NP_147228.1| - 0.071 13.0 1.3 0.1 12.5 1.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain CpXC PF14353.6 gi|14600707|ref|NP_147228.1| - 0.074 13.1 1.8 1.9 8.6 0.2 2.1 1 1 1 2 2 2 0 CpXC protein Nudix_N_2 PF14803.6 gi|14600707|ref|NP_147228.1| - 0.21 11.5 2.6 1.4 8.9 2.6 2.1 1 1 0 1 1 1 0 Nudix N-terminal Mcm10 PF09332.11 gi|14600707|ref|NP_147228.1| - 0.26 10.7 0.2 0.29 10.5 0.2 1.0 1 0 0 1 1 1 0 Mcm10 replication factor DUF1610 PF07754.11 gi|14600707|ref|NP_147228.1| - 6.8 6.8 9.4 6.7 6.8 3.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.6 gi|14600707|ref|NP_147228.1| - 6.9 7.4 9.2 1.1 10.0 0.7 2.4 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L44 PF00935.19 gi|118431044|ref|NP_147229.2| - 1.1e-26 93.1 6.5 1.6e-26 92.6 6.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|118431044|ref|NP_147229.2| - 0.024 15.1 0.9 0.024 15.1 0.9 3.0 2 1 1 3 3 3 0 Ribosomal protein L33 zinc_ribbon_4 PF13717.6 gi|118431044|ref|NP_147229.2| - 0.14 12.1 2.8 7.3 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.16 gi|118431044|ref|NP_147229.2| - 0.21 11.9 3.3 0.5 10.7 3.3 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain CpXC PF14353.6 gi|118431044|ref|NP_147229.2| - 0.28 11.2 2.0 6.3 6.9 0.1 2.1 1 1 0 2 2 2 0 CpXC protein NST1 PF13945.6 gi|118431044|ref|NP_147229.2| - 0.63 10.1 3.3 0.54 10.3 2.5 1.5 1 1 0 1 1 1 0 Salt tolerance down-regulator zf-RRN7 PF11781.8 gi|118431044|ref|NP_147229.2| - 6 6.7 7.6 10 5.9 1.1 2.6 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_primase_S PF01896.19 gi|118431046|ref|NP_147231.2| - 3.1e-24 86.0 0.0 5.3e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 DNA primase small subunit Phage_TAC_13 PF16459.5 gi|118431046|ref|NP_147231.2| - 0.071 13.6 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Phage tail assembly chaperone, TAC PCNA_N PF00705.18 gi|118431047|ref|NP_147232.2| - 2.6e-12 46.6 0.0 2.7e-11 43.2 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|118431047|ref|NP_147232.2| - 1.4e-05 25.3 0.0 2.8e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|118431047|ref|NP_147232.2| - 0.00024 20.3 0.2 0.00091 18.4 0.1 1.7 1 1 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|118431047|ref|NP_147232.2| - 0.0055 16.2 0.0 0.0093 15.4 0.0 1.4 1 1 0 1 1 1 1 Rad9 TFIIS_C PF01096.18 gi|118431049|ref|NP_147234.2| - 7.9e-22 76.8 14.4 2.7e-21 75.1 6.5 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|118431049|ref|NP_147234.2| - 2e-10 40.4 9.3 9.2e-10 38.2 0.6 2.9 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|118431049|ref|NP_147234.2| - 1.6e-08 34.4 9.5 6e-06 26.1 1.5 2.5 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|118431049|ref|NP_147234.2| - 1.2e-07 31.2 4.6 0.0012 18.3 0.3 2.6 2 1 0 2 2 2 2 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|118431049|ref|NP_147234.2| - 2.4e-06 27.4 5.7 0.017 15.0 0.7 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|118431049|ref|NP_147234.2| - 3.3e-06 26.6 10.9 0.0056 16.4 0.1 4.0 4 0 0 4 4 4 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|118431049|ref|NP_147234.2| - 3.2e-05 24.2 5.5 0.027 14.8 0.3 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar IBR PF01485.21 gi|118431049|ref|NP_147234.2| - 5.1e-05 23.4 3.6 0.042 14.1 0.3 3.1 3 0 0 3 3 3 1 IBR domain, a half RING-finger domain DZR PF12773.7 gi|118431049|ref|NP_147234.2| - 0.00016 21.6 6.1 0.032 14.3 0.3 2.6 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|118431049|ref|NP_147234.2| - 0.00055 19.8 9.5 0.29 11.1 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain DUF2387 PF09526.10 gi|118431049|ref|NP_147234.2| - 0.00071 19.7 4.3 0.052 13.7 0.1 2.4 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) A2L_zn_ribbon PF08792.10 gi|118431049|ref|NP_147234.2| - 0.003 17.2 7.6 1.1 9.1 0.1 3.7 4 0 0 4 4 4 1 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|118431049|ref|NP_147234.2| - 0.0056 16.8 12.3 3.3 7.9 0.1 4.3 4 0 0 4 4 4 1 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|118431049|ref|NP_147234.2| - 0.011 16.2 14.5 0.5 10.9 1.8 3.0 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_13 PF09855.9 gi|118431049|ref|NP_147234.2| - 0.012 15.7 12.0 0.86 9.8 0.0 3.9 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Baculo_LEF5_C PF11792.8 gi|118431049|ref|NP_147234.2| - 0.014 15.1 0.2 0.014 15.1 0.2 2.5 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-NADH-PPase PF09297.11 gi|118431049|ref|NP_147234.2| - 0.015 14.9 2.5 0.015 14.9 2.5 3.5 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|118431049|ref|NP_147234.2| - 0.016 15.9 7.3 0.98 10.2 2.5 3.2 2 1 0 2 2 2 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|118431049|ref|NP_147234.2| - 0.021 14.2 2.4 0.16 11.4 0.3 3.5 4 0 0 4 4 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|118431049|ref|NP_147234.2| - 0.032 14.2 5.3 2.1 8.4 0.2 3.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|118431049|ref|NP_147234.2| - 0.034 14.1 4.7 0.15 12.1 0.1 2.9 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|118431049|ref|NP_147234.2| - 0.055 13.4 3.6 0.055 13.4 3.6 3.4 2 2 0 2 2 2 0 Nudix N-terminal FdhE PF04216.12 gi|118431049|ref|NP_147234.2| - 0.079 12.8 5.2 0.45 10.4 0.3 2.2 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation eIF-5_eIF-2B PF01873.17 gi|118431049|ref|NP_147234.2| - 0.17 11.8 3.6 3 7.8 0.4 2.3 2 0 0 2 2 2 0 Domain found in IF2B/IF5 NOB1_Zn_bind PF08772.11 gi|118431049|ref|NP_147234.2| - 0.42 10.8 7.9 6.8 6.9 0.1 3.6 3 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 gi|118431049|ref|NP_147234.2| - 0.48 10.3 11.4 1.3 9.0 0.2 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Cys_rich_CPCC PF14206.6 gi|118431049|ref|NP_147234.2| - 0.49 10.2 0.1 0.49 10.2 0.1 2.4 2 1 0 2 2 2 0 Cysteine-rich CPCC zf-C4_Topoisom PF01396.19 gi|118431049|ref|NP_147234.2| - 0.6 9.9 10.9 5.6 6.8 3.5 3.3 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.6 gi|118431049|ref|NP_147234.2| - 0.61 10.1 5.2 6.3 6.8 0.1 2.8 3 1 0 3 3 2 0 Prokaryotic RING finger family 1 NMD3 PF04981.13 gi|118431049|ref|NP_147234.2| - 0.79 9.1 6.1 3.4 7.0 0.0 2.5 1 1 3 4 4 4 0 NMD3 family UPF0547 PF10571.9 gi|118431049|ref|NP_147234.2| - 0.91 9.7 14.5 7.5 6.7 0.4 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|118431049|ref|NP_147234.2| - 1.2 8.8 11.8 6.2 6.5 0.0 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger GFA PF04828.14 gi|118431049|ref|NP_147234.2| - 1.2 9.5 9.0 2.6 8.4 0.8 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_S27e PF01667.17 gi|118431049|ref|NP_147234.2| - 1.4 8.6 5.3 2.4 7.9 0.0 2.8 3 1 0 3 3 2 0 Ribosomal protein S27 zf-RING_7 PF02591.15 gi|118431049|ref|NP_147234.2| - 1.7 8.9 8.3 4.8 7.5 0.2 3.3 4 0 0 4 4 3 0 C4-type zinc ribbon domain PHD PF00628.29 gi|118431049|ref|NP_147234.2| - 2.1 8.3 8.3 6.5 6.7 0.2 2.8 2 1 1 3 3 3 0 PHD-finger zf-Dof PF02701.15 gi|118431049|ref|NP_147234.2| - 2.4 8.4 16.0 0.13 12.4 5.0 2.8 2 1 0 2 2 2 0 Dof domain, zinc finger zf-ZPR1 PF03367.13 gi|118431049|ref|NP_147234.2| - 2.4 8.0 8.1 0.62 9.9 0.4 2.4 2 1 1 3 3 2 0 ZPR1 zinc-finger domain RecR PF02132.15 gi|118431049|ref|NP_147234.2| - 2.5 7.8 10.9 3.5 7.3 2.3 3.7 3 1 1 4 4 4 0 RecR protein zf-MYND PF01753.18 gi|118431049|ref|NP_147234.2| - 2.6 8.2 10.2 13 5.9 1.3 3.4 2 2 1 4 4 4 0 MYND finger zf-ACC PF17848.1 gi|118431049|ref|NP_147234.2| - 2.9 8.1 14.8 1 9.5 2.5 3.6 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_SprT PF17283.2 gi|118431049|ref|NP_147234.2| - 2.9 7.9 14.3 1.3 8.9 0.7 3.6 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|118431049|ref|NP_147234.2| - 3.6 7.4 10.9 4.8 7.0 0.0 3.7 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ISL3 PF14690.6 gi|118431049|ref|NP_147234.2| - 4.4 8.0 11.4 13 6.5 0.1 3.8 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rpr2 PF04032.16 gi|118431049|ref|NP_147234.2| - 5.4 7.4 9.3 1e+02 3.3 9.3 2.9 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Mu-like_Com PF10122.9 gi|118431049|ref|NP_147234.2| - 5.5 6.5 7.7 4.6 6.8 0.2 3.1 3 0 0 3 3 3 0 Mu-like prophage protein Com CpXC PF14353.6 gi|118431049|ref|NP_147234.2| - 8.3 6.5 10.8 1.3 9.1 0.1 3.5 1 1 2 3 3 3 0 CpXC protein zf-IS66 PF13005.7 gi|118431049|ref|NP_147234.2| - 9.2 6.8 11.9 14 6.1 0.0 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.6 gi|118431049|ref|NP_147234.2| - 9.8 6.4 13.3 26 5.0 3.4 3.5 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_pol_L_2 PF13656.6 gi|118431051|ref|NP_147236.2| - 1.9e-14 53.2 0.0 2.3e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.9 gi|118431052|ref|NP_147237.2| - 3.7e-55 186.4 0.0 4.2e-55 186.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) CbbQ_C PF08406.10 gi|118431052|ref|NP_147237.2| - 0.02 15.1 1.0 0.034 14.4 0.2 1.8 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal DUF1266 PF06889.11 gi|118431052|ref|NP_147237.2| - 0.031 14.3 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1266) PSK_trans_fac PF07704.11 gi|118431052|ref|NP_147237.2| - 2.3 9.0 7.1 0.36 11.6 0.4 2.8 2 2 1 3 3 3 0 Rv0623-like transcription factor ECR1_N PF14382.6 gi|14600717|ref|NP_147238.1| - 5.4e-08 32.5 1.4 6.5e-07 29.0 0.1 2.4 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region zf-NADH-PPase PF09297.11 gi|14600717|ref|NP_147238.1| - 4e-05 23.2 1.2 6.3e-05 22.5 1.2 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|14600717|ref|NP_147238.1| - 0.00018 21.4 0.5 0.0003 20.6 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain S1 PF00575.23 gi|14600717|ref|NP_147238.1| - 0.00051 20.3 0.0 0.022 15.1 0.0 2.9 1 1 1 2 2 2 1 S1 RNA binding domain Zn_Tnp_IS91 PF14319.6 gi|14600717|ref|NP_147238.1| - 0.0019 18.2 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|14600717|ref|NP_147238.1| - 0.0027 17.2 2.8 0.4 10.2 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding HypA PF01155.19 gi|14600717|ref|NP_147238.1| - 0.0048 16.9 0.1 0.0073 16.3 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|14600717|ref|NP_147238.1| - 0.007 16.5 1.1 0.012 15.7 1.1 1.3 1 0 0 1 1 1 1 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|14600717|ref|NP_147238.1| - 0.0071 16.0 1.2 0.013 15.2 1.2 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|14600717|ref|NP_147238.1| - 0.015 14.7 3.1 0.099 12.1 3.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|14600717|ref|NP_147238.1| - 0.024 14.3 0.9 1.9 8.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2318 PF10080.9 gi|14600717|ref|NP_147238.1| - 0.026 14.6 0.1 0.039 14.1 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) NOB1_Zn_bind PF08772.11 gi|14600717|ref|NP_147238.1| - 0.031 14.4 0.6 0.055 13.6 0.6 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DNA_RNApol_7kD PF03604.13 gi|14600717|ref|NP_147238.1| - 0.032 13.9 2.1 0.064 13.0 2.1 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit MCM_OB PF17207.3 gi|14600717|ref|NP_147238.1| - 0.057 13.3 0.3 0.1 12.5 0.3 1.3 1 0 0 1 1 1 0 MCM OB domain zinc_ribbon_4 PF13717.6 gi|14600717|ref|NP_147238.1| - 0.068 13.1 2.9 0.68 9.9 2.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|14600717|ref|NP_147238.1| - 0.096 13.4 1.2 0.65 10.7 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TerY_C PF15616.6 gi|14600717|ref|NP_147238.1| - 0.11 12.6 0.1 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Anti-TRAP PF15777.5 gi|14600717|ref|NP_147238.1| - 0.15 12.1 0.3 0.25 11.3 0.3 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF1451 PF07295.11 gi|14600717|ref|NP_147238.1| - 0.18 11.8 0.5 0.3 11.1 0.5 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain DZR PF12773.7 gi|14600717|ref|NP_147238.1| - 0.18 11.8 1.1 0.31 11.1 1.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|14600717|ref|NP_147238.1| - 0.7 9.8 2.5 31 4.6 0.7 2.1 1 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Mu-like_Com PF10122.9 gi|14600717|ref|NP_147238.1| - 1.2 8.6 3.7 5.6 6.5 3.7 1.9 1 1 0 1 1 1 0 Mu-like prophage protein Com zf_UBZ PF18439.1 gi|14600717|ref|NP_147238.1| - 3.2 7.4 3.6 8.6 6.0 0.1 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|14600717|ref|NP_147238.1| - 6.2 7.0 5.6 3.2 7.9 0.8 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Cons_hypoth95 PF03602.15 gi|14600718|ref|NP_147239.1| - 3.7e-05 23.4 0.0 4.8e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|14600718|ref|NP_147239.1| - 0.0066 16.1 0.0 0.0094 15.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|14600718|ref|NP_147239.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Diphthamide_syn PF01866.17 gi|118431053|ref|NP_147240.2| - 2.7e-61 207.7 0.0 3.4e-61 207.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Ribosomal_L16 PF00252.18 gi|14600720|ref|NP_147241.1| - 4.5e-40 136.7 0.1 5.1e-40 136.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e FeoC PF09012.10 gi|14600720|ref|NP_147241.1| - 0.46 10.6 1.6 9.5 6.4 0.5 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator MoeA_N PF03453.17 gi|14600721|ref|NP_147242.1| - 8.6e-25 87.3 2.4 1.2e-24 86.9 0.5 2.1 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 gi|14600721|ref|NP_147242.1| - 1.1e-13 51.1 0.2 5.4e-12 45.7 0.1 3.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoCF_biosynth PF00994.24 gi|14600721|ref|NP_147242.1| - 2.2e-09 37.1 0.0 8.2e-09 35.3 0.0 2.0 1 1 0 1 1 1 1 Probable molybdopterin binding domain Cren7 PF11520.8 gi|14600722|ref|NP_147243.1| - 1.5e-30 104.9 3.7 1.6e-30 104.8 3.7 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 SfsA PF03749.13 gi|14600724|ref|NP_147245.1| - 7.3e-28 97.2 0.0 1.4e-27 96.3 0.0 1.4 2 0 0 2 2 2 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|14600724|ref|NP_147245.1| - 3.6e-13 49.5 0.4 6.9e-13 48.5 0.4 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain NERD PF08378.11 gi|14600724|ref|NP_147245.1| - 0.014 15.9 0.0 0.62 10.6 0.0 2.4 2 0 0 2 2 2 0 Nuclease-related domain Aminotran_3 PF00202.21 gi|14600726|ref|NP_147247.1| - 2.2e-122 408.6 0.0 2.7e-122 408.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|14600726|ref|NP_147247.1| - 0.0094 15.2 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II HTH_Crp_2 PF13545.6 gi|14600727|ref|NP_147248.1| - 1.4e-05 25.0 0.1 1.8e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|14600727|ref|NP_147248.1| - 0.00073 19.4 1.2 0.0011 18.8 1.2 1.3 1 0 0 1 1 1 1 MarR family Crp PF00325.20 gi|14600727|ref|NP_147248.1| - 0.002 17.7 0.3 0.0032 17.1 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family MarR PF01047.22 gi|14600727|ref|NP_147248.1| - 0.0054 16.6 0.0 0.007 16.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|14600727|ref|NP_147248.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|14600727|ref|NP_147248.1| - 0.015 15.0 1.6 0.021 14.5 1.6 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|14600727|ref|NP_147248.1| - 0.015 15.1 1.1 0.015 15.1 1.1 1.7 1 1 1 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|14600727|ref|NP_147248.1| - 0.017 15.3 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|14600727|ref|NP_147248.1| - 0.018 14.9 0.1 0.026 14.4 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 gi|14600727|ref|NP_147248.1| - 0.053 13.7 3.0 0.072 13.2 3.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin LexA_DNA_bind PF01726.16 gi|14600727|ref|NP_147248.1| - 0.053 13.3 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.6 gi|14600727|ref|NP_147248.1| - 0.067 13.3 2.4 0.11 12.7 2.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|14600727|ref|NP_147248.1| - 0.072 12.9 0.2 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|14600727|ref|NP_147248.1| - 0.086 13.3 0.2 0.13 12.8 0.2 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|14600727|ref|NP_147248.1| - 0.094 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|14600727|ref|NP_147248.1| - 0.096 12.1 1.4 0.098 12.1 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|14600727|ref|NP_147248.1| - 0.1 12.2 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NIF3 PF01784.18 gi|118431055|ref|NP_147249.2| - 0.16 11.5 0.0 0.19 11.3 0.0 1.0 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Hjc PF01870.18 gi|14600729|ref|NP_147250.1| - 1.9e-31 107.9 0.0 2.5e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|14600729|ref|NP_147250.1| - 0.057 13.9 0.0 0.065 13.7 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain AHJR-like PF18743.1 gi|14600729|ref|NP_147250.1| - 0.3 10.6 0.1 0.52 9.9 0.0 1.5 2 0 0 2 2 2 0 REase_AHJR-like T2SSE PF00437.20 gi|14600730|ref|NP_147251.1| - 6.3e-11 41.8 0.0 2.2e-10 40.1 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|14600730|ref|NP_147251.1| - 2.7e-05 23.8 0.0 9.1e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|14600730|ref|NP_147251.1| - 0.00034 21.0 0.0 0.001 19.5 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|14600730|ref|NP_147251.1| - 0.00083 19.9 0.1 0.003 18.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|14600730|ref|NP_147251.1| - 0.00084 19.1 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|14600730|ref|NP_147251.1| - 0.002 17.5 0.0 0.0049 16.2 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain NACHT PF05729.12 gi|14600730|ref|NP_147251.1| - 0.004 17.1 0.1 0.014 15.3 0.1 1.9 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.12 gi|14600730|ref|NP_147251.1| - 0.0096 15.7 0.0 0.05 13.4 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain MeaB PF03308.16 gi|14600730|ref|NP_147251.1| - 0.015 14.3 0.0 0.035 13.1 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|14600730|ref|NP_147251.1| - 0.016 15.5 0.1 0.052 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|14600730|ref|NP_147251.1| - 0.021 14.2 0.0 0.054 12.8 0.0 1.7 1 0 0 1 1 1 0 KaiC AAA PF00004.29 gi|14600730|ref|NP_147251.1| - 0.021 15.3 0.0 0.042 14.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|14600730|ref|NP_147251.1| - 0.025 15.1 0.0 0.055 14.0 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 gi|14600730|ref|NP_147251.1| - 0.028 14.4 0.0 0.08 12.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|14600730|ref|NP_147251.1| - 0.037 14.3 0.0 0.086 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|14600730|ref|NP_147251.1| - 0.044 13.0 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|14600730|ref|NP_147251.1| - 0.048 13.8 0.1 0.14 12.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.22 gi|14600730|ref|NP_147251.1| - 0.056 13.1 0.2 0.092 12.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|14600730|ref|NP_147251.1| - 0.059 13.1 0.1 0.22 11.2 0.1 1.9 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|14600730|ref|NP_147251.1| - 0.065 13.1 0.0 0.26 11.2 0.0 2.0 2 0 0 2 2 1 0 NTPase TsaE PF02367.17 gi|14600730|ref|NP_147251.1| - 0.072 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|14600730|ref|NP_147251.1| - 0.072 12.8 0.2 0.16 11.7 0.1 1.7 2 0 0 2 2 1 0 AAA domain KTI12 PF08433.10 gi|14600730|ref|NP_147251.1| - 0.086 12.3 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NIR_SIR_ferr PF03460.17 gi|14600730|ref|NP_147251.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain ATP_bind_1 PF03029.17 gi|14600730|ref|NP_147251.1| - 0.13 12.0 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.13 gi|14600730|ref|NP_147251.1| - 0.17 11.1 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|14600730|ref|NP_147251.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|14600730|ref|NP_147251.1| - 0.18 11.7 0.0 0.87 9.5 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain PhoH PF02562.16 gi|14600730|ref|NP_147251.1| - 0.19 11.2 0.2 1.1 8.6 0.2 2.1 1 1 1 2 2 2 0 PhoH-like protein ThiI PF02568.14 gi|118431057|ref|NP_147253.2| - 4.3e-45 153.7 0.0 6.3e-45 153.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|118431057|ref|NP_147253.2| - 3.4e-25 88.8 0.2 4.9e-25 88.3 0.2 1.2 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|118431057|ref|NP_147253.2| - 0.0012 18.4 0.0 0.31 10.5 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC HTH_38 PF13936.6 gi|118431059|ref|NP_147255.2| - 1.6e-06 27.7 0.1 3.6e-06 26.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|118431059|ref|NP_147255.2| - 2.6e-05 23.7 1.0 0.00055 19.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|118431059|ref|NP_147255.2| - 4.5e-05 23.0 0.5 0.00052 19.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|118431059|ref|NP_147255.2| - 5.3e-05 22.9 0.1 0.00012 21.8 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_40 PF14493.6 gi|118431059|ref|NP_147255.2| - 9.3e-05 22.8 0.9 0.00021 21.7 0.9 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|118431059|ref|NP_147255.2| - 0.00039 20.3 0.3 0.00083 19.2 0.0 1.7 2 0 0 2 2 2 1 HTH domain Terminase_5 PF06056.12 gi|118431059|ref|NP_147255.2| - 0.00095 19.0 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_19 PF12844.7 gi|118431059|ref|NP_147255.2| - 0.00099 19.1 0.4 0.0064 16.5 0.4 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|118431059|ref|NP_147255.2| - 0.0018 18.3 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_31 PF13560.6 gi|118431059|ref|NP_147255.2| - 0.003 17.9 0.4 0.0052 17.1 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|118431059|ref|NP_147255.2| - 0.0035 17.5 0.1 0.096 12.9 0.1 2.4 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|118431059|ref|NP_147255.2| - 0.0045 16.5 0.8 0.039 13.5 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|118431059|ref|NP_147255.2| - 0.0073 15.8 0.6 0.027 14.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|118431059|ref|NP_147255.2| - 0.0073 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF3489 PF11994.8 gi|118431059|ref|NP_147255.2| - 0.013 15.6 0.3 0.028 14.5 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_28 PF13518.6 gi|118431059|ref|NP_147255.2| - 0.019 15.1 0.1 0.033 14.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|118431059|ref|NP_147255.2| - 0.025 14.4 0.0 0.065 13.1 0.0 1.7 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|118431059|ref|NP_147255.2| - 0.039 13.9 1.1 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain PaaX PF07848.12 gi|118431059|ref|NP_147255.2| - 0.045 14.0 0.2 0.17 12.2 0.2 1.9 1 1 0 1 1 1 0 PaaX-like protein HTH_20 PF12840.7 gi|118431059|ref|NP_147255.2| - 0.061 13.4 0.1 0.16 12.1 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|118431059|ref|NP_147255.2| - 0.073 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|118431059|ref|NP_147255.2| - 0.079 12.6 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding KorB PF08535.10 gi|118431059|ref|NP_147255.2| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 KorB domain Acetyltransf_CG PF14542.6 gi|118431059|ref|NP_147255.2| - 0.11 12.6 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HTH_10 PF04967.12 gi|118431059|ref|NP_147255.2| - 0.13 12.1 0.5 0.37 10.6 0.1 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_3 PF01381.22 gi|118431059|ref|NP_147255.2| - 0.2 11.8 0.2 0.2 11.8 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix ABC2_membrane_2 PF12679.7 gi|118431060|ref|NP_147256.2| - 1.7e-10 40.6 21.0 6.5e-10 38.8 21.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|118431060|ref|NP_147256.2| - 7.2e-05 22.8 6.2 7.2e-05 22.8 6.2 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|118431060|ref|NP_147256.2| - 0.0033 17.0 3.2 0.0082 15.7 2.1 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein 7TM_GPCR_Srh PF10318.9 gi|118431060|ref|NP_147256.2| - 0.034 13.2 0.3 0.17 10.9 0.1 1.9 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srh CUE PF02845.16 gi|118431060|ref|NP_147256.2| - 0.12 12.1 0.5 0.2 11.4 0.5 1.4 1 0 0 1 1 1 0 CUE domain ABC2_membrane_3 PF12698.7 gi|118431060|ref|NP_147256.2| - 0.6 9.2 13.1 0.025 13.7 7.5 1.6 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|118431060|ref|NP_147256.2| - 6.1 6.2 19.6 0.035 13.5 11.1 1.7 2 1 0 2 2 2 0 ABC-2 type transporter ABC_tran PF00005.27 gi|118431062|ref|NP_147257.2| - 1.7e-19 70.7 0.0 3.1e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431062|ref|NP_147257.2| - 4.5e-14 53.0 0.1 4.9e-10 39.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|118431062|ref|NP_147257.2| - 0.0021 18.8 0.0 0.0034 18.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|118431062|ref|NP_147257.2| - 0.042 13.3 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|118431062|ref|NP_147257.2| - 0.25 11.8 0.0 0.37 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIN PF01850.21 gi|118431063|ref|YP_874827.1| - 2.1e-09 37.9 0.1 2.6e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 PIN domain Arena_ncap_C PF17290.2 gi|118431063|ref|YP_874827.1| - 0.096 12.0 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain DUF2508 PF10704.9 gi|118431064|ref|YP_874828.1| - 0.1 12.8 0.1 0.23 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2508) Vesiculo_matrix PF06326.12 gi|14600737|ref|NP_147258.1| - 0.063 13.0 0.0 0.064 13.0 0.0 1.0 1 0 0 1 1 1 0 Vesiculovirus matrix protein PIN_2 PF10130.9 gi|14600738|ref|NP_147259.1| - 1.3e-26 93.4 0.0 1.5e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|14600738|ref|NP_147259.1| - 9.5e-06 26.4 0.1 1.8e-05 25.5 0.0 1.5 1 1 1 2 2 2 1 PIN domain DUF3437 PF11919.8 gi|118431065|ref|YP_874829.1| - 0.00085 19.2 0.0 0.0011 18.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3437) DUF3395 PF11875.8 gi|118431065|ref|YP_874829.1| - 0.052 13.4 0.3 0.059 13.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3395) DUF104 PF01954.16 gi|118431066|ref|NP_147260.2| - 6.5e-06 26.5 1.0 8.1e-06 26.2 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF5546 PF17700.1 gi|118431067|ref|YP_874830.1| - 0.011 16.1 0.1 0.011 16.1 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5546) MazE_antitoxin PF04014.18 gi|118431068|ref|NP_147261.2| - 6.5e-10 38.7 0.1 6.5e-10 38.7 0.1 2.1 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin TOBE PF03459.17 gi|118431068|ref|NP_147261.2| - 0.059 13.7 0.0 0.24 11.7 0.0 2.1 1 0 0 1 1 1 0 TOBE domain ABATE PF07336.11 gi|118431068|ref|NP_147261.2| - 7.5 7.2 9.4 0.58 10.8 1.2 2.4 1 1 1 2 2 2 0 Putative stress-induced transcription regulator Cdc6_C PF09079.11 gi|118431069|ref|NP_147262.2| - 7.4e-22 77.1 0.2 2.2e-21 75.6 0.2 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|118431069|ref|NP_147262.2| - 2.3e-12 47.6 0.2 7.5e-11 42.7 0.2 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|118431069|ref|NP_147262.2| - 3.9e-11 43.4 0.0 9.3e-11 42.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118431069|ref|NP_147262.2| - 5e-06 27.0 0.0 1.1e-05 25.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|118431069|ref|NP_147262.2| - 2.9e-05 23.6 0.0 4.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|118431069|ref|NP_147262.2| - 0.0044 17.0 0.0 0.0092 15.9 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|118431069|ref|NP_147262.2| - 0.0088 15.2 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|118431069|ref|NP_147262.2| - 0.024 14.4 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|118431069|ref|NP_147262.2| - 0.033 14.2 0.0 0.071 13.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_assoc_2 PF16193.5 gi|118431069|ref|NP_147262.2| - 0.038 14.3 0.1 0.11 12.9 0.1 1.7 2 0 0 2 2 1 0 AAA C-terminal domain Sigma54_activat PF00158.26 gi|118431069|ref|NP_147262.2| - 0.053 13.2 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain DEAD PF00270.29 gi|118431069|ref|NP_147262.2| - 0.062 13.1 0.0 15 5.3 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|118431069|ref|NP_147262.2| - 0.068 13.2 0.1 0.26 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|118431069|ref|NP_147262.2| - 0.069 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|118431069|ref|NP_147262.2| - 0.071 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 gi|118431069|ref|NP_147262.2| - 0.086 12.6 0.0 8.8 6.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein TIP49 PF06068.13 gi|118431069|ref|NP_147262.2| - 0.088 12.0 0.1 5 6.2 0.0 2.2 1 1 0 2 2 2 0 TIP49 P-loop domain PEPCK_ATP PF01293.20 gi|118431069|ref|NP_147262.2| - 0.14 10.8 0.0 0.21 10.2 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase DUF99 PF01949.16 gi|118431070|ref|NP_147263.2| - 1.7e-39 135.1 0.0 2e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Radical_SAM PF04055.21 gi|118431072|ref|NP_147264.2| - 1e-23 84.5 0.0 3.4e-23 82.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|118431072|ref|NP_147264.2| - 2.4e-21 76.0 0.0 3.6e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|118431072|ref|NP_147264.2| - 0.00077 19.6 0.0 0.0024 18.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|118431072|ref|NP_147264.2| - 0.021 15.1 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|118431073|ref|NP_147267.2| - 2.8e-12 46.9 1.7 3.6e-12 46.5 1.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|118431073|ref|NP_147267.2| - 4.5e-11 42.1 13.2 1.8e-06 27.5 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|118431073|ref|NP_147267.2| - 7.1e-10 38.8 18.0 2.9e-06 27.3 10.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|118431073|ref|NP_147267.2| - 1.1e-09 38.7 1.6 1.5e-09 38.2 1.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|118431073|ref|NP_147267.2| - 2.1e-08 34.6 19.7 4e-07 30.5 8.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|118431073|ref|NP_147267.2| - 4.3e-08 32.8 9.7 0.0009 19.2 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|118431073|ref|NP_147267.2| - 1.1e-07 31.6 10.9 0.0013 18.7 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|118431073|ref|NP_147267.2| - 4.9e-07 29.8 6.4 2.9e-06 27.3 6.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|118431073|ref|NP_147267.2| - 1e-05 25.6 6.2 0.015 15.4 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|118431073|ref|NP_147267.2| - 1.3e-05 25.3 8.8 0.017 15.6 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|118431073|ref|NP_147267.2| - 1.4e-05 25.2 7.1 0.0011 19.2 0.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|118431073|ref|NP_147267.2| - 0.00037 21.4 11.4 0.005 17.8 11.6 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|118431073|ref|NP_147267.2| - 0.00067 20.4 17.4 0.0061 17.4 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|118431073|ref|NP_147267.2| - 0.0056 17.5 7.5 0.54 11.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|118431073|ref|NP_147267.2| - 0.0063 16.3 3.2 0.19 11.5 0.1 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|118431073|ref|NP_147267.2| - 0.021 15.3 7.9 0.43 11.2 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|118431073|ref|NP_147267.2| - 0.13 13.1 6.6 2.8 8.7 0.6 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain zf-C2H2_11 PF16622.5 gi|118431073|ref|NP_147267.2| - 1.4 8.7 7.3 6.3 6.6 1.2 2.4 2 0 0 2 2 2 0 zinc-finger C2H2-type A2L_zn_ribbon PF08792.10 gi|118431073|ref|NP_147267.2| - 7.5 6.4 11.1 5.2 6.9 1.8 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain FAD-oxidase_C PF02913.19 gi|14600751|ref|NP_147272.1| - 3e-69 233.4 0.4 4e-69 233.0 0.4 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|14600751|ref|NP_147272.1| - 4.3e-37 126.9 0.1 8e-37 126.1 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain HDC PF02329.16 gi|14600751|ref|NP_147272.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Histidine carboxylase PI chain DUF2204 PF09970.9 gi|118431075|ref|NP_147273.2| - 2.7e-64 216.2 0.0 3e-64 216.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) PK PF00224.21 gi|14600753|ref|NP_147274.1| - 2e-87 293.4 0.0 2.7e-87 292.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain HpcH_HpaI PF03328.14 gi|14600753|ref|NP_147274.1| - 3.9e-05 22.9 0.0 0.00011 21.4 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PK_C PF02887.16 gi|14600753|ref|NP_147274.1| - 0.00057 20.1 0.0 0.0019 18.4 0.0 1.8 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain Pribosyltran PF00156.27 gi|118431076|ref|NP_147275.2| - 9.2e-15 54.5 0.0 1.5e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HemN_C PF06969.16 gi|118431076|ref|NP_147275.2| - 0.045 13.8 0.0 0.094 12.8 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain NRho PF16733.5 gi|118431076|ref|NP_147275.2| - 0.15 12.1 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 Rhomboid N-terminal domain Linker_histone PF00538.19 gi|118431076|ref|NP_147275.2| - 0.2 12.0 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 linker histone H1 and H5 family Nitroreductase PF00881.24 gi|118431077|ref|NP_147276.2| - 3.7e-23 82.4 0.0 4.4e-23 82.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|118431077|ref|NP_147276.2| - 3.4e-05 23.5 0.2 0.12 11.9 0.1 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase IF-2B PF01008.17 gi|118431078|ref|NP_147277.2| - 1.9e-06 27.3 0.0 2.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family RNase_HII PF01351.18 gi|118431079|ref|NP_147280.2| - 1.7e-42 145.5 0.0 2e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII RNA_Me_trans PF04252.13 gi|14600760|ref|NP_147281.1| - 4.2e-05 23.2 0.0 7.5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Lactamase_B_2 PF12706.7 gi|118431080|ref|NP_147282.2| - 6.2e-05 22.6 0.0 8.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|118431080|ref|NP_147282.2| - 0.0031 17.5 0.7 0.022 14.8 0.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily EMG1 PF03587.14 gi|14600762|ref|NP_147283.1| - 6.7e-41 140.1 0.0 7.5e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase DUF2153 PF09921.9 gi|118431081|ref|NP_147284.2| - 1.9e-50 169.8 3.4 2.2e-50 169.6 3.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Trm112p PF03966.16 gi|14600764|ref|NP_147285.1| - 1.2e-17 64.2 0.5 1.6e-17 63.8 0.5 1.2 1 0 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.12 gi|14600764|ref|NP_147285.1| - 0.0004 19.8 2.7 0.068 12.7 1.2 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding Ribosomal_L33 PF00471.20 gi|14600764|ref|NP_147285.1| - 0.059 13.8 0.1 0.19 12.2 0.0 1.7 2 0 0 2 2 2 0 Ribosomal protein L33 zf-UDP PF14569.6 gi|14600764|ref|NP_147285.1| - 0.087 13.0 0.5 0.32 11.1 0.1 1.9 2 0 0 2 2 2 0 Zinc-binding RING-finger Mac PF12464.8 gi|14600764|ref|NP_147285.1| - 0.11 12.8 0.1 0.2 12.0 0.1 1.6 1 1 0 1 1 1 0 Maltose acetyltransferase zf-HYPF PF07503.12 gi|14600764|ref|NP_147285.1| - 0.13 12.0 0.2 0.13 12.0 0.2 2.7 3 0 0 3 3 3 0 HypF finger zf-ribbon_3 PF13248.6 gi|14600764|ref|NP_147285.1| - 0.3 10.5 3.8 1.6 8.3 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|14600764|ref|NP_147285.1| - 0.47 10.5 5.0 15 5.7 1.7 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|14600764|ref|NP_147285.1| - 1 9.4 5.4 9.5 6.3 1.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_9 PF14369.6 gi|14600764|ref|NP_147285.1| - 4.4 7.7 9.2 18 5.7 0.1 3.3 2 1 0 2 2 2 0 zinc-ribbon Endonuclease_5 PF04493.14 gi|14600765|ref|NP_147286.1| - 4.9e-51 173.2 0.1 5.8e-51 173.0 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|14600765|ref|NP_147286.1| - 0.014 14.8 0.1 0.024 14.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function DUF99 Proteasome PF00227.26 gi|118431082|ref|NP_147287.2| - 3e-52 176.9 0.0 3.4e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit TF_Zn_Ribbon PF08271.12 gi|118431083|ref|NP_147288.2| - 2.1e-08 33.5 1.1 3.4e-08 32.9 1.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|118431083|ref|NP_147288.2| - 0.0043 16.7 0.8 0.0067 16.1 0.8 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|118431083|ref|NP_147288.2| - 0.017 14.5 3.1 0.23 10.9 3.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|118431083|ref|NP_147288.2| - 0.024 14.3 1.8 0.04 13.6 1.8 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.7 gi|118431083|ref|NP_147288.2| - 0.034 14.2 0.2 0.056 13.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|118431083|ref|NP_147288.2| - 0.097 12.4 0.7 0.24 11.1 0.7 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|118431083|ref|NP_147288.2| - 0.42 11.2 4.9 4.4 7.9 0.1 2.7 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain zf-RRN7 PF11781.8 gi|118431083|ref|NP_147288.2| - 2.4 7.9 4.7 0.89 9.3 1.3 1.9 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NOG1_N PF17835.1 gi|118431084|ref|NP_147290.2| - 2.8e-16 59.9 1.7 1.5e-15 57.6 1.7 2.0 1 1 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|118431084|ref|NP_147290.2| - 4.8e-16 58.9 0.0 8.4e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|118431084|ref|NP_147290.2| - 1.3e-12 47.3 0.0 2.9e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|118431084|ref|NP_147290.2| - 1.8e-08 34.0 0.0 3.2e-08 33.2 0.0 1.5 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_16 PF13191.6 gi|118431084|ref|NP_147290.2| - 0.00026 21.4 0.7 0.00098 19.5 0.1 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|118431084|ref|NP_147290.2| - 0.00054 20.2 0.4 0.0025 18.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|118431084|ref|NP_147290.2| - 0.0012 19.4 0.9 0.0077 16.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain AIG1 PF04548.16 gi|118431084|ref|NP_147290.2| - 0.01 15.1 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Dynamin_N PF00350.23 gi|118431084|ref|NP_147290.2| - 0.013 15.5 0.4 2.4 8.2 0.2 2.4 1 1 1 2 2 2 0 Dynamin family TniB PF05621.11 gi|118431084|ref|NP_147290.2| - 0.014 14.8 0.0 0.52 9.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|118431084|ref|NP_147290.2| - 0.019 15.1 0.7 0.078 13.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|118431084|ref|NP_147290.2| - 0.043 13.3 0.0 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_17 PF13207.6 gi|118431084|ref|NP_147290.2| - 0.049 14.0 0.7 0.15 12.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|118431084|ref|NP_147290.2| - 0.072 13.1 0.0 1.7 8.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|118431084|ref|NP_147290.2| - 0.085 12.4 0.0 1 8.9 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|118431084|ref|NP_147290.2| - 0.089 11.8 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|118431084|ref|NP_147290.2| - 0.091 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.6 gi|118431084|ref|NP_147290.2| - 0.095 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|118431084|ref|NP_147290.2| - 0.11 12.8 0.1 0.45 10.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain RTC PF01137.21 gi|118431085|ref|NP_147291.2| - 4.4e-76 255.0 0.0 5.5e-76 254.6 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|118431085|ref|NP_147291.2| - 2.5e-19 69.7 0.1 5.8e-19 68.5 0.1 1.6 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DMAP1 PF05499.12 gi|118431085|ref|NP_147291.2| - 0.13 12.2 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 DNA methyltransferase 1-associated protein 1 (DMAP1) CTP_transf_like PF01467.26 gi|118431086|ref|NP_147292.2| - 5.7e-13 49.3 0.0 1.3e-12 48.1 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase-like Methyltr_RsmB-F PF01189.17 gi|14600772|ref|NP_147293.1| - 2.8e-47 161.0 0.0 3.7e-47 160.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|14600772|ref|NP_147293.1| - 5.7e-14 52.4 0.0 1e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Met_10 PF02475.16 gi|14600772|ref|NP_147293.1| - 0.0031 17.3 0.0 0.0049 16.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|14600772|ref|NP_147293.1| - 0.0037 16.9 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 FtsJ PF01728.19 gi|14600772|ref|NP_147293.1| - 0.02 15.0 0.0 0.035 14.2 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|14600772|ref|NP_147293.1| - 0.025 15.3 0.0 0.14 12.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain PSRT PF07636.11 gi|14600772|ref|NP_147293.1| - 0.041 13.5 1.9 5.2 6.8 0.1 2.6 2 0 0 2 2 2 0 PSRT Fibrillarin PF01269.17 gi|14600772|ref|NP_147293.1| - 0.043 12.9 0.0 0.073 12.2 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin UPF0113 PF03657.13 gi|118431087|ref|NP_147294.2| - 2.2e-16 59.8 0.0 3.1e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|118431087|ref|NP_147294.2| - 2.3e-05 24.9 0.0 3.5e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain FKBP_C PF00254.28 gi|14600774|ref|NP_147295.1| - 3.5e-09 36.9 0.0 7.5e-09 35.8 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Fe-ADH_2 PF13685.6 gi|118431088|ref|NP_147296.2| - 1.6e-63 214.7 0.2 2e-63 214.4 0.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|118431088|ref|NP_147296.2| - 7.5e-25 87.5 2.6 2.5e-23 82.5 2.6 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|118431088|ref|NP_147296.2| - 1.1e-10 41.1 6.2 1.4e-05 24.4 0.1 3.9 3 1 0 3 3 3 3 3-dehydroquinate synthase Proteasome PF00227.26 gi|118431089|ref|NP_147297.2| - 1.7e-55 187.5 0.4 1.9e-55 187.3 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.8 gi|118431090|ref|NP_147298.2| - 1.2e-26 93.2 0.0 2.6e-26 92.1 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|118431090|ref|NP_147298.2| - 2.2e-18 66.0 10.3 3.8e-18 65.2 1.3 3.7 3 1 1 4 4 4 1 KH domain Lactamase_B_6 PF16661.5 gi|118431090|ref|NP_147298.2| - 1.4e-14 53.9 0.0 1.2e-13 50.9 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|118431090|ref|NP_147298.2| - 4.1e-14 52.2 0.0 1.3e-13 50.7 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|118431090|ref|NP_147298.2| - 6.3e-10 39.4 0.8 5.9e-09 36.2 0.4 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|118431090|ref|NP_147298.2| - 5.6e-09 35.8 0.0 2.2e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|118431090|ref|NP_147298.2| - 0.0033 17.3 0.0 0.015 15.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Gag_spuma PF03276.14 gi|118431090|ref|NP_147298.2| - 0.079 11.4 0.0 0.12 10.7 0.0 1.2 1 0 0 1 1 1 0 Spumavirus gag protein PUA PF01472.20 gi|118431091|ref|NP_147299.2| - 5.6e-18 64.7 1.3 8.1e-18 64.2 1.3 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|118431091|ref|NP_147299.2| - 9.4e-09 35.5 0.0 2.3e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|118431091|ref|NP_147299.2| - 2.9e-05 24.7 0.0 5.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Pre-PUA-like domain LSM PF01423.22 gi|14600779|ref|NP_147300.1| - 4.1e-19 68.0 0.2 4.6e-19 67.9 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|14600779|ref|NP_147300.1| - 0.00036 20.6 0.0 0.00039 20.5 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|14600779|ref|NP_147300.1| - 0.0032 17.1 0.1 0.0037 16.9 0.1 1.3 1 1 0 1 1 1 1 Hfq protein Ribosomal_L37e PF01907.19 gi|14600780|ref|NP_147301.1| - 7.1e-25 86.9 13.2 8e-25 86.8 13.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RING_10 PF16685.5 gi|14600780|ref|NP_147301.1| - 0.043 13.9 1.1 0.046 13.9 1.1 1.1 1 0 0 1 1 1 0 zinc RING finger of MSL2 MraY_sig1 PF10555.9 gi|14600780|ref|NP_147301.1| - 0.24 11.0 1.3 0.41 10.3 1.3 1.4 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NRDD PF13597.6 gi|14600780|ref|NP_147301.1| - 3.2 6.4 6.1 3.4 6.3 6.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Peptidase_M24 PF00557.24 gi|118431092|ref|NP_147302.2| - 5.6e-61 205.9 0.0 7.3e-61 205.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|118431092|ref|NP_147302.2| - 7.5e-10 39.6 0.0 1.6e-09 38.5 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain FmdA_AmdA PF03069.15 gi|14600782|ref|NP_147303.1| - 7.5e-123 410.1 0.0 8.5e-123 409.9 0.0 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family ZnuA PF01297.17 gi|118431093|ref|NP_147304.2| - 2.4e-10 40.3 0.0 3.1e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|118431094|ref|NP_147305.2| - 2.6e-24 86.3 0.0 3.6e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431094|ref|NP_147305.2| - 6.6e-12 45.9 0.8 3.4e-05 23.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|118431094|ref|NP_147305.2| - 1.6e-06 28.8 0.2 2.3e-06 28.3 0.2 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|118431094|ref|NP_147305.2| - 4e-05 23.2 0.1 0.013 14.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|118431094|ref|NP_147305.2| - 0.00019 21.1 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|118431094|ref|NP_147305.2| - 0.00027 20.7 0.0 0.0054 16.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|118431094|ref|NP_147305.2| - 0.00076 19.1 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|118431094|ref|NP_147305.2| - 0.0011 18.7 0.2 0.009 15.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431094|ref|NP_147305.2| - 0.014 15.8 0.0 0.023 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|118431094|ref|NP_147305.2| - 0.024 13.7 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|118431094|ref|NP_147305.2| - 0.032 14.0 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|118431094|ref|NP_147305.2| - 0.069 13.4 0.0 0.14 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|118431094|ref|NP_147305.2| - 0.071 13.0 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|118431094|ref|NP_147305.2| - 0.074 13.2 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|118431094|ref|NP_147305.2| - 0.1 13.1 0.1 0.22 11.9 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3584 PF12128.8 gi|118431094|ref|NP_147305.2| - 0.27 8.7 0.0 0.37 8.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC-3 PF00950.17 gi|118431095|ref|NP_147306.2| - 1.8e-14 53.9 22.7 2.1e-14 53.6 22.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family RHH_3 PF12651.7 gi|14600786|ref|NP_147307.1| - 1.8e-17 63.0 0.1 2.6e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|14600786|ref|NP_147307.1| - 6.6e-06 25.9 1.4 1.2e-05 25.1 1.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|14600786|ref|NP_147307.1| - 2.5e-05 24.3 0.6 5.6e-05 23.2 0.3 1.7 1 1 0 1 1 1 1 NikR C terminal nickel binding domain baeRF_family2 PF18844.1 gi|14600786|ref|NP_147307.1| - 0.03 14.4 0.9 0.33 11.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 DUF2120 PF09893.9 gi|14600786|ref|NP_147307.1| - 0.082 13.0 0.0 0.22 11.6 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Glyco_hydro_99 PF16317.5 gi|118431096|ref|NP_147308.2| - 1.3e-07 31.1 0.0 5.4e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 Glycosyl hydrolase family 99 Glyco_tran_WbsX PF14307.6 gi|118431096|ref|NP_147308.2| - 0.00027 20.5 0.0 0.49 9.8 0.1 2.6 3 0 0 3 3 3 2 Glycosyltransferase WbsX Glyco_hydro_71 PF03659.14 gi|118431096|ref|NP_147308.2| - 0.043 12.6 0.3 0.081 11.7 0.3 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 ATP_bind_3 PF01171.20 gi|118431097|ref|NP_147309.2| - 7.8e-09 35.5 0.0 1.3e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|118431097|ref|NP_147309.2| - 0.0015 17.7 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase DZR PF12773.7 gi|118431097|ref|NP_147309.2| - 0.0018 18.3 6.7 0.014 15.4 0.2 3.2 3 0 0 3 3 3 1 Double zinc ribbon zn-ribbon_14 PF16503.5 gi|118431097|ref|NP_147309.2| - 0.0063 16.0 0.9 0.0063 16.0 0.9 2.5 3 0 0 3 3 3 1 Zinc-ribbon zf-dskA_traR PF01258.17 gi|118431097|ref|NP_147309.2| - 0.018 15.0 12.1 0.052 13.5 1.6 3.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|118431097|ref|NP_147309.2| - 2.9 7.4 9.3 2.7 7.5 0.5 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Ribosomal_L13e PF01294.18 gi|14600790|ref|NP_147311.1| - 4e-12 46.4 0.0 4.2e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e CLP1_P PF16575.5 gi|118431098|ref|NP_147312.2| - 2.9e-18 66.3 0.0 4.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_29 PF13555.6 gi|118431098|ref|NP_147312.2| - 0.012 15.4 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|118431098|ref|NP_147312.2| - 0.023 15.2 0.0 0.043 14.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|118431098|ref|NP_147312.2| - 0.087 12.9 0.0 0.3 11.2 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|118431098|ref|NP_147312.2| - 0.12 12.6 0.0 0.24 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain HTH_27 PF13463.6 gi|118431099|ref|NP_147314.2| - 0.12 12.9 1.8 0.44 11.1 0.1 2.5 2 1 1 3 3 3 0 Winged helix DNA-binding domain MFS_1 PF07690.16 gi|118431100|ref|YP_874832.1| - 1.8e-13 50.2 76.5 6.4e-11 41.8 48.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|118431100|ref|YP_874832.1| - 0.01 14.6 5.4 0.014 14.2 5.4 1.2 1 0 0 1 1 1 0 LacY proton/sugar symporter UPRTase PF14681.6 gi|118431101|ref|NP_147316.2| - 2.4e-41 141.4 0.0 3.2e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|118431101|ref|NP_147316.2| - 4.1e-09 36.1 0.0 5.8e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain THUMP PF02926.17 gi|118431102|ref|NP_147317.2| - 1.5e-30 106.2 0.2 5.3e-30 104.4 0.0 1.9 2 0 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.18 gi|118431103|ref|YP_874833.1| - 1.2e-32 111.7 0.0 1.4e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e SH3_12 PF18129.1 gi|118431103|ref|YP_874833.1| - 0.24 11.5 0.5 0.93 9.6 0.5 2.0 1 1 0 1 1 1 0 Xrn1 SH3-like domain Neural_ProG_Cyt PF06567.11 gi|118431104|ref|NP_147319.2| - 0.032 14.5 0.0 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain RNA_pol_Rpb4 PF03874.16 gi|118431104|ref|NP_147319.2| - 0.034 14.5 0.0 0.036 14.4 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb4 DUF655 PF04919.12 gi|14600798|ref|NP_147320.1| - 5e-85 284.0 0.2 6e-85 283.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|14600798|ref|NP_147320.1| - 0.00085 19.5 1.7 0.001 19.2 0.2 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|14600798|ref|NP_147320.1| - 0.0026 18.0 0.4 0.012 15.9 0.2 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|14600798|ref|NP_147320.1| - 0.0081 16.0 0.6 0.031 14.1 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|14600800|ref|NP_147322.1| - 1.3e-26 93.3 0.0 1.6e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|14600800|ref|NP_147322.1| - 0.05 13.1 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|14600800|ref|NP_147322.1| - 0.06 14.0 0.0 0.11 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|14600800|ref|NP_147322.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase PrmA PF06325.13 gi|118431105|ref|NP_147323.2| - 0.0001 21.8 0.1 0.00014 21.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|118431105|ref|NP_147323.2| - 0.00014 21.4 0.0 0.00022 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain SpoU_methylase PF00588.19 gi|118431106|ref|NP_147324.2| - 8.5e-29 100.5 0.0 1.4e-28 99.9 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Deltaretro_Tax PF05599.11 gi|118431106|ref|NP_147324.2| - 0.017 15.7 1.1 0.024 15.2 0.1 1.8 2 0 0 2 2 2 0 Deltaretrovirus Tax protein UPF0020 PF01170.18 gi|14600803|ref|NP_147325.1| - 1.3e-55 188.2 0.0 3.8e-55 186.6 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|14600803|ref|NP_147325.1| - 7.4e-21 74.8 0.0 1e-20 74.3 0.0 1.2 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|14600803|ref|NP_147325.1| - 4.7e-11 42.5 0.0 9.3e-11 41.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|14600803|ref|NP_147325.1| - 1.3e-08 35.4 0.0 3.3e-08 34.1 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Met_10 PF02475.16 gi|14600803|ref|NP_147325.1| - 3.5e-06 26.9 0.0 5.6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|14600803|ref|NP_147325.1| - 4.3e-06 26.6 0.0 7e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|14600803|ref|NP_147325.1| - 4.4e-06 27.3 0.0 2.7e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|14600803|ref|NP_147325.1| - 6.1e-05 22.6 0.0 8.3e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|14600803|ref|NP_147325.1| - 6.3e-05 22.6 0.0 9.4e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|14600803|ref|NP_147325.1| - 0.00016 21.4 0.0 0.00023 20.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|14600803|ref|NP_147325.1| - 0.0003 20.5 0.0 0.00051 19.7 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|14600803|ref|NP_147325.1| - 0.001 18.5 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.18 gi|14600803|ref|NP_147325.1| - 0.0038 17.0 0.0 0.0064 16.2 0.0 1.5 2 0 0 2 2 2 1 DNA methylase N6_Mtase PF02384.16 gi|14600803|ref|NP_147325.1| - 0.0052 16.1 0.0 0.012 14.9 0.0 1.6 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.12 gi|14600803|ref|NP_147325.1| - 0.052 14.3 0.0 0.14 12.9 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain Peripla_BP_6 PF13458.6 gi|118431107|ref|NP_147326.2| - 4.1e-37 128.6 3.9 5.4e-37 128.2 3.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|118431107|ref|NP_147326.2| - 0.00015 20.9 0.0 0.055 12.5 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|118431107|ref|NP_147326.2| - 0.00017 20.8 0.0 0.00026 20.2 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_4 PF13407.6 gi|118431107|ref|NP_147326.2| - 0.0012 18.5 0.1 0.01 15.4 0.0 2.3 2 0 0 2 2 2 1 Periplasmic binding protein domain Fe-ADH PF00465.19 gi|118431107|ref|NP_147326.2| - 0.0013 17.7 0.0 0.0033 16.3 0.0 1.6 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|118431107|ref|NP_147326.2| - 0.0043 16.8 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase PS_Dcarbxylase PF02666.15 gi|118431107|ref|NP_147326.2| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase DUF2139 PF09910.9 gi|14600805|ref|NP_147327.1| - 6.3e-146 485.9 0.0 7.6e-146 485.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) F420_oxidored PF03807.17 gi|118431108|ref|NP_147329.2| - 2.5e-11 44.0 0.1 5.2e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|118431108|ref|NP_147329.2| - 1.1e-07 31.1 0.0 1.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|118431108|ref|NP_147329.2| - 3.4e-07 30.6 0.0 4.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|118431108|ref|NP_147329.2| - 4.7e-07 29.3 0.1 1e-06 28.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|118431108|ref|NP_147329.2| - 2.6e-05 24.1 1.0 5.1e-05 23.1 1.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain GFO_IDH_MocA PF01408.22 gi|118431108|ref|NP_147329.2| - 0.00018 22.3 0.1 0.00031 21.5 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|118431108|ref|NP_147329.2| - 0.011 15.6 0.1 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|118431108|ref|NP_147329.2| - 0.012 16.1 0.1 0.02 15.4 0.1 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|118431108|ref|NP_147329.2| - 0.067 13.3 0.0 0.099 12.7 0.0 1.2 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CM_2 PF01817.21 gi|118431109|ref|YP_874834.1| - 1.4e-14 54.2 1.5 1.8e-14 53.8 1.5 1.2 1 0 0 1 1 1 1 Chorismate mutase type II Chorismate_synt PF01264.21 gi|14600808|ref|NP_147331.1| - 9.4e-123 409.1 0.0 1.1e-122 408.9 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.20 gi|14600809|ref|NP_147332.1| - 8.8e-89 298.1 0.0 1e-88 297.9 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.26 gi|14600810|ref|NP_147333.1| - 2.6e-06 27.6 1.3 2.6e-06 27.6 1.3 2.8 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|14600810|ref|NP_147333.1| - 7.6e-06 26.2 0.9 7.6e-06 26.2 0.9 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Shikimate_dh_N PF08501.11 gi|118431110|ref|NP_147334.2| - 2.2e-16 59.9 0.0 3.9e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|118431110|ref|NP_147334.2| - 7.5e-06 26.1 0.0 1.2e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|118431110|ref|NP_147334.2| - 0.00057 20.2 0.0 0.0014 18.9 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain SDH_C PF18317.1 gi|118431110|ref|NP_147334.2| - 0.0043 16.8 0.1 0.016 15.0 0.2 1.9 2 0 0 2 2 2 1 Shikimate 5'-dehydrogenase C-terminal domain ThiF PF00899.21 gi|118431110|ref|NP_147334.2| - 0.0085 15.5 0.3 0.066 12.6 0.2 2.2 3 0 0 3 3 3 1 ThiF family KR PF08659.10 gi|118431110|ref|NP_147334.2| - 0.016 15.2 0.3 0.025 14.5 0.3 1.2 1 0 0 1 1 1 0 KR domain F420_oxidored PF03807.17 gi|118431110|ref|NP_147334.2| - 0.023 15.3 0.2 0.047 14.3 0.2 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|118431110|ref|NP_147334.2| - 0.046 12.8 6.6 0.076 12.1 6.6 1.3 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|118431110|ref|NP_147334.2| - 0.063 12.6 0.0 0.093 12.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|118431110|ref|NP_147334.2| - 0.088 12.3 0.3 0.13 11.7 0.3 1.2 1 0 0 1 1 1 0 short chain dehydrogenase GIDA PF01134.22 gi|118431110|ref|NP_147334.2| - 0.16 11.0 5.4 0.22 10.6 5.4 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A PE PF00934.20 gi|118431110|ref|NP_147334.2| - 0.19 12.1 1.8 0.36 11.2 0.2 2.1 2 0 0 2 2 2 0 PE family Pyr_redox_2 PF07992.14 gi|118431110|ref|NP_147334.2| - 0.55 9.4 3.7 0.22 10.7 0.8 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DHquinase_I PF01487.15 gi|14600813|ref|NP_147336.1| - 1.4e-09 38.5 0.0 1.8e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQ_synthase PF01761.20 gi|14600814|ref|NP_147337.1| - 2.1e-70 236.9 0.0 2.8e-70 236.5 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|14600814|ref|NP_147337.1| - 0.062 13.0 3.0 0.32 10.6 0.1 2.3 2 1 0 2 2 2 0 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 gi|118431111|ref|NP_147338.2| - 5.3e-82 274.8 0.0 7e-82 274.4 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|118431111|ref|NP_147338.2| - 4.2e-06 26.4 0.0 7.2e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 NeuB family Nsp1 PF11501.8 gi|118431111|ref|NP_147338.2| - 0.025 14.6 0.0 0.24 11.5 0.0 2.3 2 0 0 2 2 2 0 Non structural protein Nsp1 PGM_PMM_II PF02879.16 gi|118431111|ref|NP_147338.2| - 0.1 13.2 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Transket_pyr PF02779.24 gi|14600816|ref|NP_147339.1| - 4e-33 114.6 0.1 7.4e-33 113.7 0.0 1.4 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|14600816|ref|NP_147339.1| - 8.9e-27 93.4 0.0 2.5e-26 92.0 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|14600816|ref|NP_147339.1| - 2.1e-06 28.0 0.1 5.8e-06 26.5 0.1 1.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 gi|118431112|ref|NP_147340.2| - 3e-20 72.4 0.0 7.1e-20 71.2 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|118431112|ref|NP_147340.2| - 1.3e-05 24.5 0.0 1.8e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|118431112|ref|NP_147340.2| - 0.00025 20.1 0.0 0.00034 19.7 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.10 gi|118431112|ref|NP_147340.2| - 0.0046 15.8 0.0 0.0058 15.5 0.0 1.1 1 0 0 1 1 1 1 XFP N-terminal domain ECH_1 PF00378.20 gi|118431114|ref|NP_147343.2| - 1.3e-40 139.3 0.0 1.6e-40 139.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|118431114|ref|NP_147343.2| - 2.2e-27 96.5 0.0 2.8e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase GvpO PF05800.11 gi|118431114|ref|NP_147343.2| - 0.15 12.1 0.1 0.38 10.8 0.0 1.7 2 0 0 2 2 2 0 Gas vesicle synthesis protein GvpO HTH_45 PF14947.6 gi|118431117|ref|NP_147346.2| - 5.5e-15 55.1 0.0 6.3e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|118431117|ref|NP_147346.2| - 1.5e-06 28.0 0.0 2.2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|118431117|ref|NP_147346.2| - 1.4e-05 24.9 0.1 2.3e-05 24.2 0.1 1.5 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|118431117|ref|NP_147346.2| - 0.0008 18.9 0.2 0.0026 17.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|118431117|ref|NP_147346.2| - 0.001 19.5 0.1 0.0016 18.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|118431117|ref|NP_147346.2| - 0.0026 17.6 0.0 0.0035 17.2 0.0 1.2 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain Rrf2 PF02082.20 gi|118431117|ref|NP_147346.2| - 0.0054 17.0 0.0 0.01 16.1 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator DUF4364 PF14277.6 gi|118431117|ref|NP_147346.2| - 0.0081 15.9 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) FeoC PF09012.10 gi|118431117|ref|NP_147346.2| - 0.015 15.4 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_15 PF12324.8 gi|118431117|ref|NP_147346.2| - 0.015 15.2 0.1 0.027 14.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_20 PF12840.7 gi|118431117|ref|NP_147346.2| - 0.02 15.0 0.0 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_42 PF06224.12 gi|118431117|ref|NP_147346.2| - 0.022 14.3 0.3 0.027 14.0 0.3 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|118431117|ref|NP_147346.2| - 0.041 14.2 0.0 0.051 13.9 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor Phage_rep_org_N PF09681.10 gi|118431117|ref|NP_147346.2| - 0.099 12.6 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) dbPDZ_assoc PF16610.5 gi|118431117|ref|NP_147346.2| - 0.19 12.0 0.0 0.26 11.5 0.0 1.2 1 0 0 1 1 1 0 Unstructured region between two PDZ domains on Dlg5 Pyr_redox_2 PF07992.14 gi|118431118|ref|NP_147347.2| - 1.7e-18 66.9 0.0 7.1e-18 64.9 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|118431118|ref|NP_147347.2| - 0.0017 18.9 0.0 0.23 12.0 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DUF4179 PF13786.6 gi|14600825|ref|NP_147348.1| - 0.18 12.3 0.1 6.7 7.3 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4179) Filo_VP35 PF02097.15 gi|14600825|ref|NP_147348.1| - 0.24 10.4 0.0 0.32 10.0 0.0 1.1 1 0 0 1 1 1 0 Filoviridae VP35 DUF5320 PF17253.2 gi|118431119|ref|NP_147349.2| - 0.00044 21.3 0.5 0.00061 20.8 0.5 1.3 1 1 0 1 1 1 1 Family of unknown function (DUF5320) Glucos_trans_II PF14264.6 gi|118431119|ref|NP_147349.2| - 0.0092 15.4 0.0 0.01 15.2 0.0 1.0 1 0 0 1 1 1 1 Glucosyl transferase GtrII DUF4083 PF13314.6 gi|118431119|ref|NP_147349.2| - 0.0093 15.9 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4083) DUF4446 PF14584.6 gi|118431119|ref|NP_147349.2| - 0.011 15.8 0.1 0.012 15.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2140 PF09911.9 gi|118431119|ref|NP_147349.2| - 0.013 15.0 0.0 0.016 14.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) Phage_holin_3_6 PF07332.11 gi|118431119|ref|NP_147349.2| - 0.014 15.4 0.4 0.02 14.9 0.4 1.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DivIC PF04977.15 gi|118431119|ref|NP_147349.2| - 0.016 15.0 1.2 0.03 14.1 1.2 1.5 1 1 0 1 1 1 0 Septum formation initiator MscL PF01741.18 gi|118431119|ref|NP_147349.2| - 0.018 15.3 0.0 0.021 15.1 0.0 1.1 1 0 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL DUF4131 PF13567.6 gi|118431119|ref|NP_147349.2| - 0.024 14.3 0.1 0.027 14.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TMEM208_SND2 PF05620.11 gi|118431119|ref|NP_147349.2| - 0.043 13.6 0.2 0.048 13.4 0.2 1.1 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 EMC3_TMCO1 PF01956.16 gi|118431119|ref|NP_147349.2| - 0.045 13.5 0.0 0.048 13.4 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like STE3 PF02076.15 gi|118431119|ref|NP_147349.2| - 0.045 13.0 0.0 0.054 12.7 0.0 1.0 1 0 0 1 1 1 0 Pheromone A receptor DUF1192 PF06698.11 gi|118431119|ref|NP_147349.2| - 0.052 13.6 1.7 0.065 13.3 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) LapA_dom PF06305.11 gi|118431119|ref|NP_147349.2| - 0.12 12.2 6.8 0.24 11.2 6.8 1.6 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF2973 PF11189.8 gi|118431119|ref|NP_147349.2| - 0.12 12.4 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2973) HTH_23 PF13384.6 gi|14600827|ref|NP_147350.1| - 0.00088 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|14600827|ref|NP_147350.1| - 0.0053 16.8 0.1 0.036 14.1 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 gi|14600827|ref|NP_147350.1| - 0.023 14.8 0.1 0.068 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|14600827|ref|NP_147350.1| - 0.1 12.9 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Transposase NUDIX PF00293.28 gi|14600828|ref|NP_147351.1| - 3.3e-17 62.7 0.5 5.2e-17 62.1 0.3 1.4 1 1 1 2 2 2 1 NUDIX domain MoaE PF02391.17 gi|14600831|ref|NP_147354.1| - 2.5e-20 72.8 0.2 3.6e-20 72.3 0.2 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|14600831|ref|NP_147354.1| - 0.097 13.3 0.0 0.31 11.7 0.0 2.0 1 1 0 1 1 1 0 ThiS family VWA_2 PF13519.6 gi|118431122|ref|NP_147355.2| - 3e-09 37.5 0.0 4.8e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|118431122|ref|NP_147355.2| - 8.8e-09 35.8 0.0 1.1e-08 35.6 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain PIN_4 PF13638.6 gi|118431123|ref|NP_147356.2| - 0.0091 16.3 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 PIN domain Peptidase_S8 PF00082.22 gi|14600834|ref|NP_147357.1| - 1.4e-31 109.9 0.0 5.8e-31 107.9 0.0 1.8 1 1 0 1 1 1 1 Subtilase family Rib PF08428.10 gi|14600834|ref|NP_147357.1| - 0.12 12.4 1.1 0.46 10.5 1.1 2.1 1 0 0 1 1 1 0 Rib/alpha-like repeat EF-hand_5 PF13202.6 gi|14600834|ref|NP_147357.1| - 3.7 7.2 4.2 1.1 8.8 0.1 2.2 2 0 0 2 2 2 0 EF hand NPV_P10 PF05531.12 gi|118431124|ref|NP_147358.2| - 4.8e-08 33.4 47.3 0.0025 18.2 0.6 7.2 1 1 4 6 6 6 4 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|118431124|ref|NP_147358.2| - 1e-07 31.1 9.9 0.0012 17.8 0.3 2.6 2 1 1 3 3 3 2 Spc7 kinetochore protein Laminin_II PF06009.12 gi|118431124|ref|NP_147358.2| - 1.2e-06 28.6 32.0 0.0022 18.0 1.5 5.6 2 1 3 6 6 6 3 Laminin Domain II Baculo_PEP_C PF04513.12 gi|118431124|ref|NP_147358.2| - 2e-06 27.9 48.0 0.00097 19.2 9.8 3.9 1 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|118431124|ref|NP_147358.2| - 1.8e-05 22.9 10.9 0.0065 14.5 3.9 2.1 1 1 1 2 2 2 2 Prominin EzrA PF06160.12 gi|118431124|ref|NP_147358.2| - 0.00013 20.3 9.3 0.002 16.4 9.3 2.2 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Snapin_Pallidin PF14712.6 gi|118431124|ref|NP_147358.2| - 0.00031 21.1 11.2 1.2 9.6 0.3 4.3 2 1 3 5 5 5 2 Snapin/Pallidin AAA_13 PF13166.6 gi|118431124|ref|NP_147358.2| - 0.0017 17.1 13.0 0.027 13.1 2.3 2.6 1 1 1 2 2 2 2 AAA domain MscS_porin PF12795.7 gi|118431124|ref|NP_147358.2| - 0.0017 17.9 17.7 1.3 8.6 7.3 3.4 1 1 1 3 3 3 3 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|118431124|ref|NP_147358.2| - 0.0017 18.4 32.7 0.2 11.7 2.1 5.6 2 1 5 7 7 6 4 Protein of unknown function (DUF1664) EMP24_GP25L PF01105.24 gi|118431124|ref|NP_147358.2| - 0.0023 17.9 1.1 0.018 15.0 0.0 2.7 2 1 0 2 2 2 1 emp24/gp25L/p24 family/GOLD IFT57 PF10498.9 gi|118431124|ref|NP_147358.2| - 0.0036 16.3 8.2 0.27 10.1 0.3 3.0 1 1 3 4 4 4 2 Intra-flagellar transport protein 57 XhlA PF10779.9 gi|118431124|ref|NP_147358.2| - 0.0041 17.3 18.5 0.0041 17.3 0.6 5.1 4 1 1 5 5 5 1 Haemolysin XhlA ATG16 PF08614.11 gi|118431124|ref|NP_147358.2| - 0.0056 16.9 14.4 0.59 10.3 3.7 3.4 1 1 1 3 3 3 2 Autophagy protein 16 (ATG16) DUF724 PF05266.14 gi|118431124|ref|NP_147358.2| - 0.0076 16.1 2.8 0.025 14.4 0.7 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF724) DivIVA PF05103.13 gi|118431124|ref|NP_147358.2| - 0.012 15.7 9.2 6.7 6.8 2.3 4.2 3 2 1 4 4 3 0 DivIVA protein FlaC_arch PF05377.11 gi|118431124|ref|NP_147358.2| - 0.013 15.8 16.3 39 4.7 0.2 7.7 3 3 4 7 7 7 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.8 gi|118431124|ref|NP_147358.2| - 0.014 15.6 4.9 2.5 8.3 0.3 3.4 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding KxDL PF10241.9 gi|118431124|ref|NP_147358.2| - 0.022 15.0 3.0 7.8 6.9 0.6 3.8 2 1 2 4 4 4 0 Uncharacterized conserved protein ALIX_LYPXL_bnd PF13949.6 gi|118431124|ref|NP_147358.2| - 0.039 13.2 10.4 0.37 10.1 0.4 2.3 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV HMMR_N PF15905.5 gi|118431124|ref|NP_147358.2| - 0.045 13.2 7.5 0.7 9.3 1.4 2.3 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Filament PF00038.21 gi|118431124|ref|NP_147358.2| - 0.059 13.0 7.6 3.3 7.2 0.2 2.4 1 1 1 2 2 2 0 Intermediate filament protein UPF0242 PF06785.11 gi|118431124|ref|NP_147358.2| - 0.059 13.5 2.9 7 6.7 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus MCPsignal PF00015.21 gi|118431124|ref|NP_147358.2| - 0.071 12.9 36.8 0.29 10.9 3.4 4.8 1 1 4 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FG-GAP PF01839.23 gi|118431124|ref|NP_147358.2| - 0.16 12.2 3.8 3.5 7.9 0.1 3.2 3 0 0 3 3 2 0 FG-GAP repeat DUF16 PF01519.16 gi|118431124|ref|NP_147358.2| - 0.16 12.5 13.2 1.5 9.4 0.8 3.5 1 1 1 3 3 3 0 Protein of unknown function DUF16 ISG65-75 PF11727.8 gi|118431124|ref|NP_147358.2| - 0.22 10.7 4.9 1.7 7.8 0.7 2.7 2 2 0 2 2 2 0 Invariant surface glycoprotein Sec34 PF04136.15 gi|118431124|ref|NP_147358.2| - 0.35 10.8 16.2 6.4 6.6 0.1 4.6 2 2 4 6 6 6 0 Sec34-like family Tropomyosin PF00261.20 gi|118431124|ref|NP_147358.2| - 0.36 10.2 4.3 2.9 7.2 0.2 2.4 2 0 0 2 2 2 0 Tropomyosin FmiP_Thoc5 PF09766.9 gi|118431124|ref|NP_147358.2| - 0.39 9.9 0.8 3.3 6.9 0.0 2.6 2 1 0 3 3 3 0 Fms-interacting protein/Thoc5 DHC_N2 PF08393.13 gi|118431124|ref|NP_147358.2| - 0.43 9.6 10.5 0.039 13.1 1.9 2.5 1 1 1 3 3 3 0 Dynein heavy chain, N-terminal region 2 TolA_bind_tri PF16331.5 gi|118431124|ref|NP_147358.2| - 0.47 10.6 4.4 11 6.2 0.3 3.1 2 1 1 3 3 3 0 TolA binding protein trimerisation Nup54 PF13874.6 gi|118431124|ref|NP_147358.2| - 0.47 10.5 1.9 2 8.5 0.3 2.5 2 1 0 3 3 2 0 Nucleoporin complex subunit 54 CENP-F_leu_zip PF10473.9 gi|118431124|ref|NP_147358.2| - 0.48 10.4 7.0 7.8 6.5 0.1 3.1 1 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mce4_CUP1 PF11887.8 gi|118431124|ref|NP_147358.2| - 0.52 9.7 24.6 0.99 8.8 4.1 3.5 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Myosin_tail_1 PF01576.19 gi|118431124|ref|NP_147358.2| - 0.56 8.0 10.2 1.2 6.9 2.9 2.2 1 1 1 2 2 2 0 Myosin tail SKA2 PF16740.5 gi|118431124|ref|NP_147358.2| - 0.75 9.6 6.7 0.63 9.9 0.1 3.4 2 2 2 4 4 4 0 Spindle and kinetochore-associated protein 2 Spectrin PF00435.21 gi|118431124|ref|NP_147358.2| - 0.83 10.2 7.5 2.8 8.5 0.6 3.0 1 1 1 3 3 2 0 Spectrin repeat TPR_MLP1_2 PF07926.12 gi|118431124|ref|NP_147358.2| - 0.94 9.6 6.5 22 5.1 0.0 2.8 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF812 PF05667.11 gi|118431124|ref|NP_147358.2| - 0.97 8.2 11.8 0.99 8.2 4.7 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF812) SlyX PF04102.12 gi|118431124|ref|NP_147358.2| - 0.99 10.1 15.4 1.1 10.0 2.3 4.4 4 0 0 4 4 4 0 SlyX HrpB7 PF09486.10 gi|118431124|ref|NP_147358.2| - 1.2 9.5 10.3 3.2 8.1 4.1 2.9 1 1 1 3 3 3 0 Bacterial type III secretion protein (HrpB7) Leu_zip PF15294.6 gi|118431124|ref|NP_147358.2| - 1.3 8.5 5.6 1.2 8.5 1.6 2.2 2 0 0 2 2 2 0 Leucine zipper TMPIT PF07851.13 gi|118431124|ref|NP_147358.2| - 1.4 8.1 2.3 25 4.0 0.4 2.7 1 1 1 3 3 3 0 TMPIT-like protein Cob_adeno_trans PF01923.18 gi|118431124|ref|NP_147358.2| - 1.4 9.0 10.6 1.4 9.1 1.9 3.1 1 1 3 4 4 4 0 Cobalamin adenosyltransferase APG17 PF04108.12 gi|118431124|ref|NP_147358.2| - 1.6 7.7 16.3 5.4 6.0 1.6 2.9 1 1 0 2 2 2 0 Autophagy protein Apg17 COG5 PF10392.9 gi|118431124|ref|NP_147358.2| - 1.7 8.8 10.5 5.2 7.2 1.6 3.4 2 1 1 3 3 3 0 Golgi transport complex subunit 5 DASH_Duo1 PF08651.10 gi|118431124|ref|NP_147358.2| - 8.2 6.3 14.1 89 3.0 0.0 5.5 4 1 1 5 5 5 0 DASH complex subunit Duo1 CarboxypepD_reg PF13620.6 gi|118431127|ref|NP_147369.2| - 3.5e-31 107.3 25.2 2.9e-10 40.3 0.5 12.0 12 0 0 12 12 12 7 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|118431127|ref|NP_147369.2| - 3.6e-13 49.2 6.3 0.02 14.8 0.0 9.4 11 0 0 11 11 11 3 PEGA domain CarbopepD_reg_2 PF13715.6 gi|118431127|ref|NP_147369.2| - 3.1e-12 46.3 0.0 0.0072 16.3 0.0 7.7 8 1 1 9 9 9 2 CarboxypepD_reg-like domain bMG3 PF11974.8 gi|118431127|ref|NP_147369.2| - 9e-05 22.4 0.0 0.00039 20.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain DUF2012 PF09430.10 gi|118431127|ref|NP_147369.2| - 0.00016 21.7 0.2 8.7 6.5 0.0 5.9 6 1 0 6 6 6 1 Protein of unknown function (DUF2012) Big_1 PF02369.16 gi|118431127|ref|NP_147369.2| - 0.0003 20.7 14.2 0.047 13.7 0.1 6.1 8 0 0 8 8 8 2 Bacterial Ig-like domain (group 1) DUF1416 PF07210.12 gi|118431127|ref|NP_147369.2| - 0.044 13.7 0.0 0.38 10.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1416) Y_Y_Y PF07495.13 gi|118431127|ref|NP_147369.2| - 0.056 13.4 0.8 27 4.8 0.0 4.9 6 0 0 6 6 6 0 Y_Y_Y domain DUF1206 PF06724.11 gi|118431127|ref|NP_147369.2| - 0.057 13.5 0.7 0.31 11.2 0.7 2.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1206) PQQ_3 PF13570.6 gi|118431127|ref|NP_147369.2| - 0.089 13.3 0.2 0.089 13.3 0.2 5.9 7 0 0 7 7 6 0 PQQ-like domain bMG6 PF17962.1 gi|118431127|ref|NP_147369.2| - 2.3 8.4 4.1 1.8e+02 2.3 0.1 5.3 7 0 0 7 7 7 0 Bacterial macroglobulin domain 6 MazG PF03819.17 gi|118431128|ref|YP_874837.1| - 3.3e-11 43.2 0.1 4.8e-11 42.7 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|118431128|ref|YP_874837.1| - 6.7e-07 29.5 0.0 8.8e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|118431128|ref|YP_874837.1| - 5.6e-05 23.5 0.1 6.1e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase HHH_7 PF14635.6 gi|118431128|ref|YP_874837.1| - 0.19 12.1 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif PcrB PF01884.17 gi|118431129|ref|NP_147371.2| - 7.2e-52 176.1 0.0 9.1e-52 175.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|118431129|ref|NP_147371.2| - 5.6e-06 26.0 0.1 1.4e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein B12-binding PF02310.19 gi|118431129|ref|NP_147371.2| - 0.00069 19.7 1.2 0.36 10.9 0.0 2.4 2 0 0 2 2 2 2 B12 binding domain PucR PF07905.11 gi|118431129|ref|NP_147371.2| - 0.0024 18.1 0.1 0.4 11.0 0.0 2.7 2 1 0 2 2 2 1 Purine catabolism regulatory protein-like family DAGK_cat PF00781.24 gi|118431129|ref|NP_147371.2| - 0.0039 16.8 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Ribul_P_3_epim PF00834.19 gi|118431129|ref|NP_147371.2| - 0.032 13.6 0.3 0.058 12.8 0.0 1.5 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DpaA_N PF16924.5 gi|118431129|ref|NP_147371.2| - 0.035 14.2 0.0 0.061 13.4 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain NanE PF04131.14 gi|118431129|ref|NP_147371.2| - 0.11 11.7 1.3 5.3 6.2 0.1 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Glu_synthase PF01645.17 gi|118431129|ref|NP_147371.2| - 0.23 10.6 3.6 0.98 8.5 0.1 2.1 2 0 0 2 2 2 0 Conserved region in glutamate synthase Elf1 PF05129.13 gi|118431130|ref|NP_147373.2| - 1.1e-17 63.8 0.3 1.4e-17 63.5 0.3 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|118431130|ref|NP_147373.2| - 0.0088 15.4 2.8 0.82 9.2 0.0 2.5 3 0 0 3 3 3 2 zinc-ribbon domain Molybdop_Fe4S4 PF04879.16 gi|118431130|ref|NP_147373.2| - 0.057 13.4 0.5 0.057 13.4 0.5 2.2 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain zf-CHY PF05495.12 gi|118431130|ref|NP_147373.2| - 0.057 13.9 0.1 0.081 13.4 0.1 1.3 1 1 0 1 1 1 0 CHY zinc finger Lar_restr_allev PF14354.6 gi|118431130|ref|NP_147373.2| - 0.094 13.1 1.1 0.19 12.1 1.1 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|118431130|ref|NP_147373.2| - 0.53 10.3 4.5 2.1 8.4 3.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|118431130|ref|NP_147373.2| - 1.2 8.7 9.7 1.8 8.1 0.0 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|118431130|ref|NP_147373.2| - 1.3 8.6 0.0 1.3 8.6 0.0 2.3 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_L32p PF01783.23 gi|118431130|ref|NP_147373.2| - 1.8 8.9 7.7 1.5 9.2 2.3 2.3 1 1 1 2 2 2 0 Ribosomal L32p protein family AdoHcyase PF05221.17 gi|118431131|ref|NP_147374.2| - 3.4e-72 243.1 0.0 2.2e-42 145.2 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|118431131|ref|NP_147374.2| - 6.8e-59 198.5 0.8 1.3e-58 197.6 0.8 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|118431131|ref|NP_147374.2| - 3.9e-12 45.9 0.4 7.7e-12 44.9 0.4 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|118431131|ref|NP_147374.2| - 4e-09 36.3 0.4 6.8e-09 35.5 0.4 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|118431131|ref|NP_147374.2| - 0.00056 20.2 0.1 0.0041 17.4 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.18 gi|118431131|ref|NP_147374.2| - 0.0034 17.3 1.6 0.009 15.9 0.4 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|118431131|ref|NP_147374.2| - 0.024 14.7 1.1 0.14 12.2 0.4 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|118431131|ref|NP_147374.2| - 0.065 13.8 0.2 0.16 12.6 0.2 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|118431131|ref|NP_147374.2| - 0.071 13.6 0.3 0.19 12.2 0.3 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|118431131|ref|NP_147374.2| - 0.36 10.1 5.0 1.2 8.4 5.0 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|118431132|ref|NP_147376.2| - 0.0047 16.9 2.0 0.012 15.6 2.0 1.6 1 1 0 1 1 1 1 Transposase zinc-ribbon domain NAD_kinase PF01513.21 gi|118431132|ref|NP_147376.2| - 0.022 13.9 0.1 0.029 13.6 0.1 1.1 1 0 0 1 1 1 0 ATP-NAD kinase TF_Zn_Ribbon PF08271.12 gi|118431132|ref|NP_147376.2| - 0.037 13.5 0.4 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.6 gi|118431132|ref|NP_147376.2| - 0.042 14.4 1.2 0.072 13.6 1.2 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Vps39_2 PF10367.9 gi|118431132|ref|NP_147376.2| - 0.091 13.2 1.5 0.4 11.1 1.5 1.9 1 1 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 Gin PF10764.9 gi|118431132|ref|NP_147376.2| - 0.1 12.6 0.2 12 6.0 0.0 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin zf-FPG_IleRS PF06827.14 gi|118431132|ref|NP_147376.2| - 0.12 12.2 5.4 1.4 8.9 0.3 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Prok-RING_1 PF14446.6 gi|118431132|ref|NP_147376.2| - 0.13 12.2 0.6 16 5.5 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|118431132|ref|NP_147376.2| - 0.14 11.8 0.8 6.3 6.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|118431132|ref|NP_147376.2| - 0.14 12.3 1.9 0.26 11.4 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TFIIS_C PF01096.18 gi|118431132|ref|NP_147376.2| - 0.2 11.5 1.9 1.2 9.1 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ACC PF17848.1 gi|118431132|ref|NP_147376.2| - 0.75 9.9 5.5 2.5 8.2 0.6 2.6 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain VIT1 PF01988.19 gi|14600854|ref|NP_147378.1| - 0.0027 17.6 20.8 0.0088 15.9 9.4 2.0 1 1 1 2 2 2 2 VIT family WBS28 PF15164.6 gi|14600854|ref|NP_147378.1| - 0.013 14.8 2.1 0.017 14.5 2.1 1.2 1 0 0 1 1 1 0 Williams-Beuren syndrome chromosomal region 28 protein homologue COX14 PF14880.6 gi|14600854|ref|NP_147378.1| - 0.034 14.0 0.1 0.071 13.0 0.1 1.5 1 0 0 1 1 1 0 Cytochrome oxidase c assembly Synaptobrevin PF00957.21 gi|14600854|ref|NP_147378.1| - 0.071 12.9 0.7 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Synaptobrevin DUF2182 PF09948.9 gi|14600854|ref|NP_147378.1| - 1.7 8.5 6.9 1.1 9.1 2.4 2.2 1 1 1 2 2 2 0 Predicted metal-binding integral membrane protein (DUF2182) FA_desaturase PF00487.24 gi|14600854|ref|NP_147378.1| - 5 6.9 6.3 0.6 9.9 0.9 1.9 1 1 1 2 2 2 0 Fatty acid desaturase Peptidase_M20 PF01546.28 gi|118431133|ref|NP_147379.2| - 3.8e-38 131.3 0.2 6.1e-38 130.6 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|118431133|ref|NP_147379.2| - 2.6e-19 69.1 0.0 5.2e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Lactamase_B PF00753.27 gi|14600857|ref|NP_147381.1| - 1.2e-13 51.5 0.4 1.4e-13 51.3 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|14600857|ref|NP_147381.1| - 1.2e-13 51.0 0.0 1.8e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|14600857|ref|NP_147381.1| - 0.0036 17.2 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain baeRF_family10 PF18854.1 gi|14600857|ref|NP_147381.1| - 0.07 13.4 0.3 0.16 12.2 0.2 1.6 1 1 1 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 RuvA_C PF07499.13 gi|14600857|ref|NP_147381.1| - 0.081 13.4 0.1 0.37 11.3 0.1 2.2 1 0 0 1 1 1 0 RuvA, C-terminal domain AdoMet_dc PF02675.15 gi|118431134|ref|NP_147382.2| - 5.5e-33 113.4 0.0 6.3e-33 113.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Thioredoxin PF00085.20 gi|14600860|ref|NP_147384.1| - 1.1e-06 28.5 0.0 2.4e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|14600860|ref|NP_147384.1| - 0.0033 17.8 0.5 0.031 14.7 0.5 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Radical_SAM PF04055.21 gi|118431135|ref|NP_147386.2| - 4.7e-13 49.9 0.0 1.4e-12 48.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|118431135|ref|NP_147386.2| - 6e-05 23.1 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|118431135|ref|NP_147386.2| - 0.0008 19.7 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAGK_cat PF00781.24 gi|118431136|ref|NP_147388.2| - 0.13 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PPDK_N PF01326.19 gi|118431137|ref|NP_147390.2| - 1.1e-109 366.7 0.0 1.6e-109 366.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|118431137|ref|NP_147390.2| - 6.5e-85 284.8 0.0 9.8e-85 284.2 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|118431137|ref|NP_147390.2| - 1.6e-29 101.4 0.9 4.8e-29 99.9 0.9 1.9 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain Sec61_beta PF03911.16 gi|118431138|ref|NP_147391.2| - 1.7e-13 50.3 1.0 1.9e-13 50.2 1.0 1.1 1 0 0 1 1 1 1 Sec61beta family THF_DHG_CYH_C PF02882.19 gi|118431138|ref|NP_147391.2| - 0.047 13.0 0.0 0.053 12.8 0.0 1.0 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1743 PF08489.11 gi|118431140|ref|NP_147394.2| - 1.8e-31 108.6 0.0 3e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) zf-NADH-PPase PF09297.11 gi|118431140|ref|NP_147394.2| - 0.00014 21.4 7.9 0.00026 20.6 7.9 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|118431140|ref|NP_147394.2| - 0.00023 21.0 0.7 0.00041 20.2 0.7 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|118431140|ref|NP_147394.2| - 0.0043 17.0 0.8 0.0087 16.1 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon tRNA_anti-codon PF01336.25 gi|118431140|ref|NP_147394.2| - 0.029 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HypA PF01155.19 gi|118431140|ref|NP_147394.2| - 0.084 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|118431140|ref|NP_147394.2| - 0.095 12.0 2.7 0.18 11.2 2.7 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|118431140|ref|NP_147394.2| - 0.17 11.5 1.3 5.7 6.6 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|118431140|ref|NP_147394.2| - 0.32 10.8 3.0 8.9 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|118431140|ref|NP_147394.2| - 0.59 9.6 2.8 18 4.9 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|118431140|ref|NP_147394.2| - 0.7 9.8 4.5 2.8 7.9 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.7 gi|118431140|ref|NP_147394.2| - 0.7 9.9 6.7 3.2 7.8 0.8 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-CCHC_5 PF14787.6 gi|118431140|ref|NP_147394.2| - 1.2 8.9 4.8 8.4 6.2 0.3 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Zn_ribbon_SprT PF17283.2 gi|118431140|ref|NP_147394.2| - 2.3 8.2 5.6 5.3 7.0 5.6 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|118431140|ref|NP_147394.2| - 4.8 7.4 5.8 17 5.7 0.4 2.2 1 1 0 2 2 2 0 Zinc ribbon domain zf-HIT PF04438.16 gi|118431140|ref|NP_147394.2| - 8.1 6.4 6.5 7.6 6.5 1.1 2.3 2 0 0 2 2 2 0 HIT zinc finger AsnC_trans_reg PF01037.21 gi|118431141|ref|YP_874838.1| - 7.5e-13 48.3 0.4 8.4e-13 48.1 0.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|118431141|ref|YP_874838.1| - 0.013 15.6 0.5 0.019 15.0 0.5 1.2 1 0 0 1 1 1 0 NapD protein DUF1896 PF08989.10 gi|118431141|ref|YP_874838.1| - 0.058 13.5 0.0 0.073 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1896) tRNA-synt_His PF13393.6 gi|118431143|ref|NP_147398.2| - 5e-51 173.8 0.0 6.3e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|118431143|ref|NP_147398.2| - 4.8e-14 52.3 0.0 1.1e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|118431143|ref|NP_147398.2| - 1e-06 28.8 0.0 1.4e-05 25.1 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|118431143|ref|NP_147398.2| - 0.1 11.6 0.2 0.34 10.0 0.0 1.9 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|118431143|ref|NP_147398.2| - 0.13 11.7 0.0 0.39 10.2 0.0 1.7 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) PPR PF01535.20 gi|118431143|ref|NP_147398.2| - 0.19 12.1 0.1 0.49 10.8 0.1 1.7 1 0 0 1 1 1 0 PPR repeat Nuc_sug_transp PF04142.15 gi|118431143|ref|NP_147398.2| - 0.26 10.4 0.0 0.35 10.0 0.0 1.1 1 0 0 1 1 1 0 Nucleotide-sugar transporter SWIM PF04434.17 gi|14600874|ref|NP_147399.1| - 1.8e-05 24.3 0.1 3.4e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger Fn3-like PF14310.6 gi|14600874|ref|NP_147399.1| - 0.016 15.3 0.0 0.056 13.5 0.0 1.8 2 0 0 2 2 2 0 Fibronectin type III-like domain Rib_5-P_isom_A PF06026.14 gi|14600875|ref|NP_147400.1| - 4.3e-44 150.1 0.0 5.5e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TENA_THI-4 PF03070.16 gi|118431144|ref|NP_147403.2| - 9.4e-63 211.8 0.4 1.1e-62 211.6 0.4 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family MFS_1 PF07690.16 gi|14600879|ref|NP_147404.1| - 3e-26 92.2 57.2 1.8e-19 69.9 32.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily RuvA_C PF07499.13 gi|14600879|ref|NP_147404.1| - 0.26 11.8 3.4 12 6.5 0.0 3.1 3 0 0 3 3 3 0 RuvA, C-terminal domain DUF3930 PF13067.6 gi|14600879|ref|NP_147404.1| - 0.95 9.8 2.3 2.4 8.5 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) Ldh_1_N PF00056.23 gi|118431145|ref|NP_147405.2| - 5.6e-39 133.5 0.2 8e-39 133.0 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|118431145|ref|NP_147405.2| - 1e-21 77.6 0.0 2.2e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|118431145|ref|NP_147405.2| - 0.00026 20.6 1.7 0.0027 17.3 0.1 2.8 2 1 1 3 3 3 1 Family 4 glycosyl hydrolase Shikimate_DH PF01488.20 gi|118431145|ref|NP_147405.2| - 0.021 14.9 0.1 0.053 13.6 0.0 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase KR PF08659.10 gi|118431145|ref|NP_147405.2| - 0.057 13.3 0.1 0.14 12.0 0.1 1.6 2 0 0 2 2 2 0 KR domain UDPG_MGDP_dh_N PF03721.14 gi|118431145|ref|NP_147405.2| - 0.099 12.2 2.0 2.4 7.7 2.0 2.3 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|118431145|ref|NP_147405.2| - 0.15 12.7 0.6 1.3 9.7 0.5 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent V_ATPase_I PF01496.19 gi|118431146|ref|NP_147406.2| - 5.5e-33 113.9 4.3 3.4e-15 55.1 0.0 3.3 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family AlkA_N PF06029.11 gi|118431146|ref|NP_147406.2| - 0.053 13.8 0.1 4.6 7.6 0.0 2.5 2 0 0 2 2 2 0 AlkA N-terminal domain Aminotran_1_2 PF00155.21 gi|118431147|ref|NP_147407.2| - 5.8e-50 170.5 0.0 6.6e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|118431147|ref|NP_147407.2| - 1.3e-05 23.9 0.0 1.8e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|118431147|ref|NP_147407.2| - 0.098 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA_bind PF01588.20 gi|118431148|ref|NP_147408.2| - 2.1e-31 107.9 0.1 2.4e-31 107.7 0.1 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Pantoate_transf PF02548.15 gi|14600884|ref|NP_147409.1| - 6.1e-104 347.0 0.1 6.9e-104 346.8 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|14600884|ref|NP_147409.1| - 6.9e-09 35.5 0.6 6.9e-09 35.5 0.6 1.6 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase ApbA_C PF08546.11 gi|118431149|ref|NP_147410.2| - 1.4e-26 93.2 0.0 2.1e-26 92.6 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|118431149|ref|NP_147410.2| - 1.6e-14 53.8 0.0 2.7e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 4HBT PF03061.22 gi|118431150|ref|NP_147412.2| - 0.00027 21.2 0.1 0.00039 20.7 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF211 PF02680.14 gi|118431151|ref|NP_147413.2| - 7.2e-35 119.0 2.7 8.2e-35 118.8 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|118431151|ref|NP_147413.2| - 0.082 13.4 1.6 0.2 12.1 1.5 1.8 1 1 0 1 1 1 0 Heavy-metal-associated domain Prok-JAB PF14464.6 gi|118431152|ref|NP_147414.2| - 1.7e-15 56.8 0.0 2e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|118431152|ref|NP_147414.2| - 4.8e-05 23.3 0.0 6.1e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Metallophos_2 PF12850.7 gi|118431153|ref|NP_147415.2| - 2.5e-29 102.6 0.0 2.8e-29 102.4 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|118431153|ref|NP_147415.2| - 2.1e-07 31.7 0.3 3.5e-05 24.4 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|118431153|ref|NP_147415.2| - 0.0057 16.0 0.0 0.014 14.7 0.0 1.6 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DUF2283 PF10049.9 gi|118431154|ref|NP_147416.2| - 2.8e-12 46.7 0.8 3.3e-12 46.4 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) KTSC PF13619.6 gi|118431154|ref|NP_147416.2| - 0.21 11.5 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 KTSC domain HAD PF12710.7 gi|14600892|ref|NP_147417.1| - 9e-14 52.3 0.1 1.2e-13 51.9 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|14600892|ref|NP_147417.1| - 1.7e-13 51.3 0.0 1.4e-12 48.4 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|14600892|ref|NP_147417.1| - 3.9e-06 27.1 0.0 0.016 15.3 0.0 2.3 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|14600892|ref|NP_147417.1| - 0.00036 20.4 0.0 0.00082 19.2 0.0 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|14600892|ref|NP_147417.1| - 0.0031 16.9 0.0 0.039 13.4 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase tRNA_int_endo PF01974.17 gi|14600893|ref|NP_147418.1| - 7.6e-05 22.7 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain IF-2B PF01008.17 gi|14600894|ref|NP_147419.1| - 1.1e-80 270.9 0.0 1.2e-80 270.7 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family LpxI_N PF17930.1 gi|14600894|ref|NP_147419.1| - 0.13 12.2 0.0 0.35 10.7 0.0 1.6 2 0 0 2 2 2 0 LpxI N-terminal domain Glyoxalase PF00903.25 gi|14600895|ref|NP_147420.1| - 5.3e-26 91.3 0.1 5.2e-14 52.5 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|14600895|ref|NP_147420.1| - 0.00035 20.8 0.0 0.0045 17.2 0.0 2.3 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|14600895|ref|NP_147420.1| - 0.011 16.6 0.0 3.9 8.3 0.0 2.6 3 0 0 3 3 3 0 Glyoxalase-like domain Iso_dh PF00180.20 gi|118431155|ref|NP_147421.2| - 1.1e-97 327.4 0.0 1.3e-97 327.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase T2SSF PF00482.23 gi|14600897|ref|NP_147422.1| - 0.00021 21.3 11.8 0.00039 20.4 0.8 2.7 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Arm-DNA-bind_3 PF13356.6 gi|14600897|ref|NP_147422.1| - 0.036 14.4 0.0 0.14 12.6 0.0 2.1 1 0 0 1 1 1 0 Arm DNA-binding domain T2SSE PF00437.20 gi|118431156|ref|NP_147426.2| - 8.5e-40 136.5 0.0 1.2e-39 136.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|118431156|ref|NP_147426.2| - 0.00099 19.6 0.0 0.0017 18.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|118431156|ref|NP_147426.2| - 0.0015 19.1 0.0 0.0069 16.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|118431156|ref|NP_147426.2| - 0.0018 18.5 0.0 0.0036 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|118431156|ref|NP_147426.2| - 0.0022 17.7 0.0 0.0064 16.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|118431156|ref|NP_147426.2| - 0.0023 18.3 0.0 0.0087 16.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RNA12 PF10443.9 gi|118431156|ref|NP_147426.2| - 0.0043 15.8 0.0 0.0062 15.3 0.0 1.1 1 0 0 1 1 1 1 RNA12 protein AAA_29 PF13555.6 gi|118431156|ref|NP_147426.2| - 0.0045 16.7 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|118431156|ref|NP_147426.2| - 0.0062 16.8 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|118431156|ref|NP_147426.2| - 0.0072 15.9 0.1 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|118431156|ref|NP_147426.2| - 0.01 15.9 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|118431156|ref|NP_147426.2| - 0.011 16.2 0.0 0.02 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|118431156|ref|NP_147426.2| - 0.025 14.5 0.2 0.058 13.3 0.2 1.6 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|118431156|ref|NP_147426.2| - 0.027 13.9 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI dNK PF01712.19 gi|118431156|ref|NP_147426.2| - 0.031 14.1 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_21 PF13304.6 gi|118431156|ref|NP_147426.2| - 0.032 14.0 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase_2 PF01637.18 gi|118431156|ref|NP_147426.2| - 0.052 13.5 0.0 0.084 12.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|118431156|ref|NP_147426.2| - 0.062 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|118431156|ref|NP_147426.2| - 0.12 12.3 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain PduV-EutP PF10662.9 gi|118431156|ref|NP_147426.2| - 0.12 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|118431156|ref|NP_147426.2| - 0.12 12.7 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|118431156|ref|NP_147426.2| - 0.16 11.2 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.16 gi|118431156|ref|NP_147426.2| - 0.25 10.8 0.0 0.42 10.0 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|118431156|ref|NP_147426.2| - 0.27 10.7 0.0 0.44 10.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DS PF01916.17 gi|118431157|ref|NP_147428.2| - 3.8e-87 292.2 0.0 4.3e-87 292.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ParBc PF02195.18 gi|118431158|ref|NP_147431.2| - 4.7e-08 33.2 0.0 6.5e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain TP6A_N PF04406.14 gi|118431159|ref|NP_147432.2| - 5e-21 74.5 0.5 8.6e-21 73.7 0.5 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase TrbM PF07424.11 gi|118431159|ref|NP_147432.2| - 0.032 14.2 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 TrbM Topo-VIb_trans PF09239.11 gi|118431160|ref|NP_147433.2| - 1.2e-63 213.6 0.0 2.1e-63 212.9 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|118431160|ref|NP_147433.2| - 3.5e-10 40.4 0.0 5.6e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|118431160|ref|NP_147433.2| - 4.6e-09 36.2 0.0 9.5e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|118431160|ref|NP_147433.2| - 0.00073 18.4 0.0 0.0013 17.6 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Ald_Xan_dh_C2 PF02738.18 gi|118431161|ref|NP_147434.2| - 1.3e-163 545.4 0.0 1.6e-163 545.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|118431161|ref|NP_147434.2| - 1.1e-30 106.3 0.0 2.3e-30 105.2 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Colicin_V PF02674.16 gi|118431162|ref|YP_874839.1| - 0.054 13.5 8.8 0.066 13.2 8.8 1.0 1 0 0 1 1 1 0 Colicin V production protein DUF4231 PF14015.6 gi|118431162|ref|YP_874839.1| - 1.2 9.7 5.7 1.6 9.3 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF805 PF05656.14 gi|118431162|ref|YP_874839.1| - 2.4 8.6 6.5 2.6 8.5 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) AGOG PF09171.10 gi|118431163|ref|NP_147435.2| - 5.1e-69 232.4 0.0 6.3e-69 232.1 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase MR_MLE_C PF13378.6 gi|118431164|ref|NP_147436.2| - 2.1e-34 119.0 0.0 2.9e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|118431164|ref|NP_147436.2| - 5.1e-11 42.8 0.0 8.9e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TrkH PF02386.16 gi|118431165|ref|NP_147437.2| - 9.4e-47 159.6 12.2 4.1e-25 88.2 1.9 2.2 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.11 gi|118431165|ref|NP_147437.2| - 0.024 14.4 1.4 0.024 14.4 1.4 3.2 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Phage_integr_3 PF16795.5 gi|118431166|ref|NP_147438.2| - 4e-55 186.1 0.0 5.8e-55 185.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal phage integrase CBS PF00571.28 gi|118431166|ref|NP_147438.2| - 0.2 12.1 0.0 0.43 11.1 0.0 1.6 1 0 0 1 1 1 0 CBS domain Penicillinase_R PF03965.16 gi|14600914|ref|NP_147439.1| - 0.011 16.1 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor RelB PF04221.12 gi|118431167|ref|YP_874840.1| - 0.096 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RelB antitoxin ROK PF00480.20 gi|14600916|ref|NP_147441.1| - 0.063 12.7 0.1 0.076 12.5 0.1 1.1 1 0 0 1 1 1 0 ROK family HTH_IclR PF09339.10 gi|118431168|ref|YP_874841.1| - 2.5e-11 43.2 0.0 3.3e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|118431168|ref|YP_874841.1| - 1.7e-06 27.8 0.0 2.3e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|118431168|ref|YP_874841.1| - 0.0001 21.8 0.0 0.00016 21.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|118431168|ref|YP_874841.1| - 0.00023 21.5 0.0 0.00025 21.3 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.6 gi|118431168|ref|YP_874841.1| - 0.0006 19.6 0.0 0.00068 19.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_23 PF13384.6 gi|118431168|ref|YP_874841.1| - 0.00074 19.2 0.0 0.0023 17.6 0.0 1.8 1 1 1 2 2 2 1 Homeodomain-like domain HTH_45 PF14947.6 gi|118431168|ref|YP_874841.1| - 0.00091 19.2 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Sigma70_r4 PF04545.16 gi|118431168|ref|YP_874841.1| - 0.002 17.6 0.1 0.0039 16.7 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 TrmB PF01978.19 gi|118431168|ref|YP_874841.1| - 0.0027 17.5 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Dimerisation2 PF16864.5 gi|118431168|ref|YP_874841.1| - 0.0069 16.3 0.0 0.0077 16.2 0.0 1.1 1 0 0 1 1 1 1 Dimerisation domain GerE PF00196.19 gi|118431168|ref|YP_874841.1| - 0.031 13.8 0.1 0.1 12.2 0.1 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Mrr_N PF14338.6 gi|118431168|ref|YP_874841.1| - 0.039 14.1 0.1 0.17 12.1 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_10 PF04967.12 gi|118431168|ref|YP_874841.1| - 0.041 13.7 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.22 gi|118431168|ref|YP_874841.1| - 0.046 13.7 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|118431168|ref|YP_874841.1| - 0.05 13.7 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|118431168|ref|YP_874841.1| - 0.084 13.1 0.0 0.19 12.0 0.0 1.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF505 PF04458.12 gi|118431168|ref|YP_874841.1| - 0.096 11.0 0.0 0.096 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Ribosomal_S19e PF01090.19 gi|118431168|ref|YP_874841.1| - 0.14 11.9 0.1 0.29 10.8 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein S19e MarR_2 PF12802.7 gi|14600918|ref|NP_147443.1| - 0.00081 19.2 0.1 0.015 15.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|14600918|ref|NP_147443.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|14600918|ref|NP_147443.1| - 0.0015 18.4 0.4 0.72 9.8 0.1 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|14600918|ref|NP_147443.1| - 0.0033 17.0 0.0 0.012 15.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|14600918|ref|NP_147443.1| - 0.0068 16.4 0.1 0.95 9.5 0.0 2.7 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|14600918|ref|NP_147443.1| - 0.015 15.6 0.1 5.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_5 PF01022.20 gi|14600918|ref|NP_147443.1| - 0.037 13.9 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|14600918|ref|NP_147443.1| - 0.046 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.12 gi|14600918|ref|NP_147443.1| - 0.089 13.2 0.2 0.31 11.4 0.1 1.9 2 0 0 2 2 2 0 FaeA-like protein MotA_activ PF09114.10 gi|14600918|ref|NP_147443.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_27 PF13463.6 gi|118431169|ref|YP_874842.1| - 0.0026 18.2 0.2 0.0061 17.0 0.0 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.14 gi|118431169|ref|YP_874842.1| - 0.0031 17.4 0.0 0.0039 17.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|118431169|ref|YP_874842.1| - 0.068 13.0 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Wzt_C PF14524.6 gi|118431172|ref|NP_147446.2| - 0.13 12.3 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Wzt C-terminal domain Glyco_hydro_99 PF16317.5 gi|14600923|ref|NP_147448.1| - 1.5e-15 57.2 0.1 1e-08 34.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 99 Glyco_tran_WbsX PF14307.6 gi|14600923|ref|NP_147448.1| - 8.4e-06 25.5 0.0 0.034 13.6 0.1 3.1 3 0 0 3 3 3 3 Glycosyltransferase WbsX Glyco_hydro_71 PF03659.14 gi|14600923|ref|NP_147448.1| - 0.0073 15.2 0.6 0.015 14.1 0.6 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 71 DUF2104 PF09877.9 gi|118431173|ref|YP_874845.1| - 0.0091 16.2 0.1 0.011 15.9 0.1 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2104) NADH_Oxid_Nqo15 PF11497.8 gi|118431174|ref|YP_874846.1| - 0.032 14.3 0.6 0.048 13.7 0.6 1.2 1 0 0 1 1 1 0 NADH-quinone oxidoreductase chain 15 GlutR_dimer PF00745.20 gi|118431175|ref|YP_874847.1| - 0.046 14.2 0.7 0.046 14.2 0.7 2.1 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain EF-hand_6 PF13405.6 gi|14600928|ref|NP_147453.1| - 0.13 12.3 0.8 65 3.8 0.1 3.4 3 0 0 3 3 3 0 EF-hand domain EF-hand_1 PF00036.32 gi|14600928|ref|NP_147453.1| - 0.34 10.6 2.3 15 5.4 0.1 3.2 3 0 0 3 3 3 0 EF hand EF-hand_5 PF13202.6 gi|14600928|ref|NP_147453.1| - 1.7 8.3 7.3 0.53 9.9 0.3 3.1 3 0 0 3 3 3 0 EF hand Acyl-CoA_dh_1 PF00441.24 gi|14600935|ref|NP_147460.1| - 2e-31 109.2 5.2 4e-31 108.3 5.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|14600935|ref|NP_147460.1| - 7.3e-12 45.7 2.7 7.3e-12 45.7 2.7 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|14600935|ref|NP_147460.1| - 5.8e-11 42.5 0.0 9.8e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|14600935|ref|NP_147460.1| - 0.049 14.3 0.0 0.21 12.3 0.0 2.0 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain ATPgrasp_YheCD PF14398.6 gi|14600935|ref|NP_147460.1| - 0.2 10.9 0.0 0.3 10.3 0.0 1.1 1 0 0 1 1 1 0 YheC/D like ATP-grasp Sod_Fe_C PF02777.18 gi|14600936|ref|NP_147461.1| - 4.8e-36 123.0 0.1 8.2e-36 122.3 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|14600936|ref|NP_147461.1| - 8.3e-29 99.9 3.0 8.3e-29 99.9 3.0 1.9 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DNTTIP1_dimer PF18192.1 gi|14600936|ref|NP_147461.1| - 0.17 12.3 0.4 9.2 6.7 0.0 2.3 2 0 0 2 2 2 0 DNTTIP1 dimerisation domain ATPase PF06745.13 gi|118431177|ref|NP_147464.2| - 1.1e-48 165.6 0.0 2.9e-37 128.2 0.0 2.2 2 0 0 2 2 2 2 KaiC Intein_splicing PF14890.6 gi|118431177|ref|NP_147464.2| - 6.4e-14 52.0 0.0 1.8e-13 50.6 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain AAA_25 PF13481.6 gi|118431177|ref|NP_147464.2| - 8.5e-07 28.7 0.1 1.5e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|118431177|ref|NP_147464.2| - 2.4e-05 24.1 0.0 3.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein LAGLIDADG_3 PF14528.6 gi|118431177|ref|NP_147464.2| - 0.00012 22.3 0.9 0.0004 20.7 0.1 2.3 2 0 0 2 2 2 1 LAGLIDADG-like domain GvpD PF07088.11 gi|118431177|ref|NP_147464.2| - 0.00021 20.1 0.1 0.004 15.8 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein MEDS PF14417.6 gi|118431177|ref|NP_147464.2| - 0.00043 20.1 0.1 0.00087 19.2 0.1 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|118431177|ref|NP_147464.2| - 0.00069 18.9 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|118431177|ref|NP_147464.2| - 0.0039 16.6 0.0 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|118431177|ref|NP_147464.2| - 0.0092 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_22 PF13401.6 gi|118431177|ref|NP_147464.2| - 0.012 15.9 0.0 0.029 14.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF2075 PF09848.9 gi|118431177|ref|NP_147464.2| - 0.028 13.6 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|118431177|ref|NP_147464.2| - 0.059 13.1 0.0 0.097 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|118431177|ref|NP_147464.2| - 0.071 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NMD3 PF04981.13 gi|118431178|ref|NP_147465.2| - 3.3e-43 147.9 0.0 3.9e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 NMD3 family zinc-ribbons_6 PF07191.12 gi|118431178|ref|NP_147465.2| - 0.038 14.0 1.0 0.33 11.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|118431178|ref|NP_147465.2| - 0.045 13.5 5.9 0.65 9.8 0.7 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|118431178|ref|NP_147465.2| - 0.77 9.8 7.7 24 5.0 5.7 2.9 2 1 0 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|118431178|ref|NP_147465.2| - 2.2 8.7 6.3 12 6.4 4.7 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar eIF-1a PF01176.19 gi|118431179|ref|YP_874848.1| - 1.5e-18 66.4 0.2 2e-18 65.9 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|118431179|ref|YP_874848.1| - 0.052 13.3 0.8 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 RsgA N-terminal domain RIO1 PF01163.22 gi|14600941|ref|NP_147467.1| - 1.7e-62 210.4 0.0 2.3e-62 210.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|14600941|ref|NP_147467.1| - 1.4e-06 27.8 0.2 1.3e-05 24.7 0.2 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|14600941|ref|NP_147467.1| - 6.9e-06 26.1 0.9 0.0052 16.7 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|14600941|ref|NP_147467.1| - 0.013 14.8 0.0 0.068 12.5 0.0 2.0 1 1 0 1 1 1 0 Protein kinase domain KH_1 PF00013.29 gi|118431180|ref|NP_147468.2| - 1.3e-12 47.4 5.8 2.9e-06 27.0 0.2 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|118431180|ref|NP_147468.2| - 0.013 15.3 1.0 0.79 9.6 0.0 2.6 2 0 0 2 2 2 0 KH domain KH_8 PF17903.1 gi|118431180|ref|NP_147468.2| - 0.027 14.5 0.0 0.062 13.4 0.0 1.5 1 0 0 1 1 1 0 Krr1 KH1 domain KH_2 PF07650.17 gi|118431180|ref|NP_147468.2| - 0.042 13.7 6.7 0.79 9.6 0.8 2.8 2 1 0 2 2 2 0 KH domain NAD_binding_2 PF03446.15 gi|118431181|ref|NP_147470.2| - 4.7e-23 82.1 0.1 7e-23 81.5 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|118431181|ref|NP_147470.2| - 3.2e-13 50.0 0.2 6.9e-13 48.9 0.0 1.6 2 0 0 2 2 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|118431181|ref|NP_147470.2| - 5e-09 36.6 0.3 1.3e-08 35.3 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|118431181|ref|NP_147470.2| - 1.7e-08 34.6 0.1 4.1e-08 33.4 0.1 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|118431181|ref|NP_147470.2| - 1.1e-07 32.0 0.1 1.6e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|118431181|ref|NP_147470.2| - 9.2e-07 29.2 0.1 1.7e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|118431181|ref|NP_147470.2| - 5e-05 22.7 0.0 7.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|118431181|ref|NP_147470.2| - 9.8e-05 22.6 0.1 0.00073 19.8 0.1 2.2 1 1 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|118431181|ref|NP_147470.2| - 0.00036 20.9 0.2 0.00069 20.0 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.16 gi|118431181|ref|NP_147470.2| - 0.00049 19.8 0.1 0.0008 19.1 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|118431181|ref|NP_147470.2| - 0.00061 20.6 0.1 0.0012 19.6 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|118431181|ref|NP_147470.2| - 0.00093 19.2 0.0 0.0017 18.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 gi|118431181|ref|NP_147470.2| - 0.00097 19.3 1.5 0.0026 18.0 0.1 2.4 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain adh_short PF00106.25 gi|118431181|ref|NP_147470.2| - 0.0018 17.8 0.2 0.0048 16.4 0.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase DAO PF01266.24 gi|118431181|ref|NP_147470.2| - 0.002 17.8 5.9 0.014 15.0 1.2 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase IlvN PF07991.12 gi|118431181|ref|NP_147470.2| - 0.002 17.7 0.1 0.004 16.7 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_10 PF13460.6 gi|118431181|ref|NP_147470.2| - 0.013 15.3 0.7 0.031 14.2 0.5 1.7 2 0 0 2 2 2 0 NAD(P)H-binding GIDA PF01134.22 gi|118431181|ref|NP_147470.2| - 0.037 13.1 0.2 0.05 12.7 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|118431181|ref|NP_147470.2| - 0.045 13.0 0.1 0.075 12.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.14 gi|118431181|ref|NP_147470.2| - 0.053 12.7 0.4 0.17 11.0 0.2 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|118431181|ref|NP_147470.2| - 0.072 12.6 0.2 0.14 11.7 0.2 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|118431181|ref|NP_147470.2| - 0.079 12.4 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Nitro_FeMo-Co PF02579.17 gi|118431181|ref|NP_147470.2| - 0.11 12.8 0.1 0.61 10.4 0.0 2.1 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor DapB_N PF01113.20 gi|118431181|ref|NP_147470.2| - 0.13 12.3 0.1 0.23 11.6 0.1 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF2647 PF10839.8 gi|118431181|ref|NP_147470.2| - 0.23 11.5 0.9 1.3 9.1 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2647) NAD_binding_8 PF13450.6 gi|118431182|ref|NP_147471.2| - 0.03 14.5 0.1 0.076 13.3 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|118431182|ref|NP_147471.2| - 0.062 12.0 0.4 0.091 11.4 0.4 1.2 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.22 gi|118431182|ref|NP_147471.2| - 0.069 12.2 0.4 0.11 11.6 0.4 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|118431182|ref|NP_147471.2| - 0.28 10.5 1.0 0.41 9.9 1.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase HEPN PF05168.14 gi|118431183|ref|NP_147472.2| - 4.4e-31 107.5 0.5 5.4e-31 107.2 0.5 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|118431184|ref|NP_147473.2| - 3.5e-10 40.0 0.0 4.1e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|118431184|ref|NP_147473.2| - 1e-06 28.8 0.0 1.1e-06 28.6 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Epimerase PF01370.21 gi|118431186|ref|YP_874849.1| - 2.4e-11 43.6 0.0 3.3e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|118431186|ref|YP_874849.1| - 0.00027 20.2 0.0 0.00037 19.7 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|118431186|ref|YP_874849.1| - 0.0051 15.9 0.0 0.013 14.5 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Pyr_redox PF00070.27 gi|118431186|ref|YP_874849.1| - 0.54 10.9 1.7 1.2 9.7 1.7 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase_3 PF08282.12 gi|14600951|ref|NP_147477.1| - 1.6e-20 73.9 0.0 1.9e-12 47.5 0.0 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|14600951|ref|NP_147477.1| - 4.3e-08 33.7 0.4 0.00097 19.5 0.1 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|14600951|ref|NP_147477.1| - 0.00026 21.5 1.5 0.17 12.3 0.0 3.4 1 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|14600951|ref|NP_147477.1| - 0.061 12.8 0.0 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Spermine_synth PF01564.17 gi|118431187|ref|NP_147478.2| - 7.2e-48 162.5 0.0 1e-47 162.0 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|118431187|ref|NP_147478.2| - 2.8e-09 36.7 0.0 5.7e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|118431187|ref|NP_147478.2| - 1.1e-06 29.3 0.0 2.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|118431187|ref|NP_147478.2| - 2.5e-05 24.9 0.0 7.6e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|118431187|ref|NP_147478.2| - 3e-05 23.9 0.0 4.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|118431187|ref|NP_147478.2| - 0.0084 16.7 0.0 0.021 15.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|118431187|ref|NP_147478.2| - 0.019 14.3 0.0 0.049 12.9 0.0 1.6 1 1 1 2 2 2 0 O-methyltransferase domain MTS PF05175.14 gi|118431187|ref|NP_147478.2| - 0.022 14.3 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|118431187|ref|NP_147478.2| - 0.027 14.1 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 bact-PGI_C PF10432.9 gi|118431188|ref|NP_147479.2| - 3.2e-32 111.7 0.0 4.6e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain DUF373 PF04123.13 gi|118431189|ref|NP_147481.2| - 1e-71 242.2 13.2 1.4e-71 241.7 13.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF373) DUF4191 PF13829.6 gi|118431189|ref|NP_147481.2| - 0.63 9.4 3.7 1.1 8.5 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4191) SRP19 PF01922.17 gi|14600956|ref|NP_147482.1| - 5.9e-17 62.4 0.0 8.4e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 SRP19 protein AnfO_nitrog PF09582.10 gi|118431190|ref|NP_147483.2| - 0.19 11.1 0.0 5.2 6.4 0.0 2.0 2 0 0 2 2 2 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) Thioredoxin_3 PF13192.6 gi|14600959|ref|NP_147485.1| - 2.3e-33 114.1 0.0 3.5e-16 59.0 0.0 2.3 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|14600959|ref|NP_147485.1| - 0.00032 20.9 5.1 0.043 14.0 0.1 4.3 2 2 1 3 3 3 1 Glutaredoxin Thioredoxin PF00085.20 gi|14600959|ref|NP_147485.1| - 0.0058 16.6 0.0 0.19 11.7 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin TraF PF13728.6 gi|14600959|ref|NP_147485.1| - 0.034 14.0 0.0 5.1 6.9 0.0 2.6 2 1 0 2 2 2 0 F plasmid transfer operon protein Thioredoxin_4 PF13462.6 gi|14600959|ref|NP_147485.1| - 0.039 14.1 0.1 1.8 8.7 0.0 2.7 3 0 0 3 3 3 0 Thioredoxin ABC_transp_aux PF09822.9 gi|14600959|ref|NP_147485.1| - 0.052 13.0 0.0 2.3 7.6 0.0 2.4 2 1 0 2 2 2 0 ABC-type uncharacterized transport system DUF2312 PF10073.9 gi|14600959|ref|NP_147485.1| - 0.074 12.7 0.2 0.16 11.6 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF836 PF05768.14 gi|14600959|ref|NP_147485.1| - 0.078 13.4 0.0 0.69 10.4 0.0 2.2 2 1 0 2 2 2 0 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.10 gi|14600959|ref|NP_147485.1| - 0.085 12.9 0.1 7 6.7 0.0 2.5 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein HTH_3 PF01381.22 gi|14600960|ref|NP_147486.1| - 0.0034 17.4 0.1 0.0078 16.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix DUF2813 PF11398.8 gi|14600960|ref|NP_147486.1| - 0.082 12.1 0.0 0.085 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) NTS_2 PF15448.6 gi|14600960|ref|NP_147486.1| - 0.098 13.1 0.5 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein CENP-B_N PF04218.13 gi|14600960|ref|NP_147486.1| - 0.11 12.2 0.0 1.5 8.5 0.0 2.5 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain Metallophos PF00149.28 gi|14600961|ref|NP_147487.1| - 4.3e-18 66.5 0.0 5.6e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_3 PF01381.22 gi|14600962|ref|NP_147488.1| - 7.1e-09 35.6 1.3 3.3e-08 33.5 0.4 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|14600962|ref|NP_147488.1| - 2e-07 30.9 0.5 7.3e-07 29.1 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|14600962|ref|NP_147488.1| - 0.00011 22.4 0.1 0.00038 20.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain NTPase_1 PF03266.15 gi|118431192|ref|NP_147489.2| - 4.7e-53 179.5 0.0 5.4e-53 179.3 0.0 1.1 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|118431192|ref|NP_147489.2| - 1.7e-07 31.0 0.0 2.5e-06 27.2 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) MeaB PF03308.16 gi|118431192|ref|NP_147489.2| - 5.5e-06 25.6 0.3 1.6e-05 24.1 0.3 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|118431192|ref|NP_147489.2| - 1.4e-05 24.9 0.2 8.2e-05 22.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|118431192|ref|NP_147489.2| - 1.9e-05 24.9 0.0 5.7e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|118431192|ref|NP_147489.2| - 4.9e-05 23.8 0.0 6.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431192|ref|NP_147489.2| - 8e-05 23.1 0.1 0.00014 22.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|118431192|ref|NP_147489.2| - 9.2e-05 22.9 0.0 0.0005 20.5 0.0 2.1 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|118431192|ref|NP_147489.2| - 0.0001 22.8 0.0 0.00018 22.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|118431192|ref|NP_147489.2| - 0.00016 21.7 0.5 0.012 15.6 0.1 3.0 2 1 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|118431192|ref|NP_147489.2| - 0.00029 21.0 0.1 0.00047 20.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|118431192|ref|NP_147489.2| - 0.0014 18.5 0.1 0.002 18.0 0.1 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.17 gi|118431192|ref|NP_147489.2| - 0.0019 18.0 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|118431192|ref|NP_147489.2| - 0.0026 17.7 0.0 0.08 12.9 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain NACHT PF05729.12 gi|118431192|ref|NP_147489.2| - 0.0033 17.3 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.6 gi|118431192|ref|NP_147489.2| - 0.0045 16.8 0.0 0.041 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|118431192|ref|NP_147489.2| - 0.0078 15.3 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|118431192|ref|NP_147489.2| - 0.0085 16.1 0.0 0.37 10.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|118431192|ref|NP_147489.2| - 0.01 15.6 0.1 0.18 11.5 0.0 2.3 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_25 PF13481.6 gi|118431192|ref|NP_147489.2| - 0.012 15.2 0.4 0.028 14.0 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|118431192|ref|NP_147489.2| - 0.012 15.3 0.0 0.028 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|118431192|ref|NP_147489.2| - 0.013 15.4 0.0 0.3 11.0 0.0 2.4 2 1 1 3 3 2 0 Adenylylsulphate kinase AAA_19 PF13245.6 gi|118431192|ref|NP_147489.2| - 0.013 15.8 0.2 0.32 11.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|118431192|ref|NP_147489.2| - 0.018 15.4 0.0 0.043 14.2 0.0 1.6 2 0 0 2 2 1 0 RNA helicase AAA_29 PF13555.6 gi|118431192|ref|NP_147489.2| - 0.019 14.7 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|118431192|ref|NP_147489.2| - 0.022 14.1 0.0 0.063 12.6 0.0 1.9 1 1 0 1 1 1 0 KaiC AAA_28 PF13521.6 gi|118431192|ref|NP_147489.2| - 0.023 14.9 0.1 0.037 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|118431192|ref|NP_147489.2| - 0.043 13.3 0.0 0.087 12.3 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Sigma54_activ_2 PF14532.6 gi|118431192|ref|NP_147489.2| - 0.056 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Herpes_Helicase PF02689.14 gi|118431192|ref|NP_147489.2| - 0.09 10.7 0.0 5.4 4.8 0.0 2.0 2 0 0 2 2 2 0 Helicase AAA_7 PF12775.7 gi|118431192|ref|NP_147489.2| - 0.091 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|118431192|ref|NP_147489.2| - 0.097 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|118431192|ref|NP_147489.2| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|118431192|ref|NP_147489.2| - 0.11 12.1 0.1 0.31 10.6 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|118431192|ref|NP_147489.2| - 0.12 12.9 0.1 0.3 11.6 0.0 1.7 2 0 0 2 2 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|118431192|ref|NP_147489.2| - 0.15 12.2 0.0 0.23 11.5 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|118431192|ref|NP_147489.2| - 0.19 11.6 0.0 0.36 10.7 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|118431192|ref|NP_147489.2| - 0.19 11.3 0.0 1.8 8.1 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Op_neuropeptide PF08035.11 gi|118431192|ref|NP_147489.2| - 0.22 11.4 0.1 65 3.5 0.0 3.1 3 0 0 3 3 3 0 Opioids neuropeptide DUF2075 PF09848.9 gi|118431192|ref|NP_147489.2| - 0.23 10.7 0.0 0.47 9.6 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TRM PF02005.16 gi|118431193|ref|NP_147490.2| - 1.3e-80 271.4 0.0 1.6e-80 271.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DUF2067 PF09840.9 gi|118431193|ref|NP_147490.2| - 0.0066 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) MTS PF05175.14 gi|118431193|ref|NP_147490.2| - 0.023 14.2 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Met_10 PF02475.16 gi|118431193|ref|NP_147490.2| - 0.028 14.2 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein MarR PF01047.22 gi|118431194|ref|NP_147491.2| - 6.9e-06 25.9 0.6 1.1e-05 25.3 0.6 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|118431194|ref|NP_147491.2| - 0.00049 20.2 0.0 0.00063 19.9 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC RNA_pol_Rpc34 PF05158.12 gi|118431194|ref|NP_147491.2| - 0.0007 19.1 0.1 0.0033 16.8 0.0 1.7 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit MarR_2 PF12802.7 gi|118431194|ref|NP_147491.2| - 0.01 15.7 0.3 0.014 15.3 0.3 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|118431194|ref|NP_147491.2| - 0.056 13.0 1.1 0.097 12.2 1.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BAG PF02179.16 gi|118431194|ref|NP_147491.2| - 0.064 13.7 0.4 0.083 13.3 0.4 1.2 1 0 0 1 1 1 0 BAG domain CBS PF00571.28 gi|118431195|ref|NP_147492.2| - 9.5e-59 195.7 31.2 3.7e-13 49.7 2.2 7.6 7 0 0 7 7 7 7 CBS domain Ribosomal_L9_C PF03948.14 gi|118431195|ref|NP_147492.2| - 0.005 17.3 0.1 13 6.4 0.0 3.6 3 0 0 3 3 3 1 Ribosomal protein L9, C-terminal domain IF3_N PF05198.16 gi|118431195|ref|NP_147492.2| - 0.33 11.3 5.1 20 5.5 0.0 4.2 6 0 0 6 6 6 0 Translation initiation factor IF-3, N-terminal domain PELOTA_1 PF15608.6 gi|118431195|ref|NP_147492.2| - 1.1 9.2 4.6 63 3.6 0.0 4.0 4 0 0 4 4 4 0 PELOTA RNA binding domain Gar1 PF04410.14 gi|118431196|ref|NP_147493.2| - 1.5e-06 28.1 0.0 1.8e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|118431197|ref|NP_147494.2| - 1.4e-12 47.4 2.0 4.6e-09 36.2 0.2 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.19 gi|118431197|ref|NP_147494.2| - 0.00057 20.0 0.4 0.0048 17.0 0.1 2.3 1 1 1 2 2 2 1 Cyclin, C-terminal domain HTH_Crp_2 PF13545.6 gi|118431197|ref|NP_147494.2| - 0.002 18.1 0.1 0.05 13.6 0.0 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|118431197|ref|NP_147494.2| - 0.0033 17.0 0.6 0.26 11.0 0.1 3.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|118431197|ref|NP_147494.2| - 0.016 14.8 0.4 0.28 10.9 0.0 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_15 PF12324.8 gi|118431197|ref|NP_147494.2| - 0.018 15.0 0.1 0.041 13.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Put_DNA-bind_N PF06971.13 gi|118431197|ref|NP_147494.2| - 0.044 13.8 0.7 5.1 7.2 0.1 2.8 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus Rrf2 PF02082.20 gi|118431197|ref|NP_147494.2| - 0.069 13.5 1.8 1.8 9.0 0.2 2.4 2 0 0 2 2 2 0 Transcriptional regulator TFIIB_C_1 PF18542.1 gi|118431197|ref|NP_147494.2| - 0.15 12.1 0.8 0.79 9.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 NTPase_I-T PF01931.18 gi|118431198|ref|NP_147495.2| - 7.8e-41 139.6 0.2 9.4e-41 139.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 Ribosomal_S8e PF01201.22 gi|14600970|ref|NP_147496.1| - 5.2e-31 107.7 0.8 5.9e-31 107.5 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e DUF948 PF06103.11 gi|14600971|ref|NP_147497.1| - 2.8e-06 27.5 12.3 8.3e-05 22.8 0.5 4.0 3 1 2 5 5 3 1 Bacterial protein of unknown function (DUF948) T3SSipB PF16535.5 gi|14600971|ref|NP_147497.1| - 7.4e-05 23.3 0.9 7.4e-05 23.3 0.9 3.0 2 1 1 3 3 3 1 Type III cell invasion protein SipB GAS PF13851.6 gi|14600971|ref|NP_147497.1| - 0.00083 18.8 22.2 0.00083 18.8 22.2 3.6 1 1 2 3 3 3 1 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|14600971|ref|NP_147497.1| - 0.00093 19.3 51.5 0.1 12.7 20.7 3.7 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|14600971|ref|NP_147497.1| - 0.0015 17.5 53.2 0.0037 16.2 21.7 3.0 1 1 2 3 3 3 1 Spc7 kinetochore protein JIP_LZII PF16471.5 gi|14600971|ref|NP_147497.1| - 0.0022 18.1 5.4 0.0022 18.1 5.4 6.2 3 3 2 6 6 5 1 JNK-interacting protein leucine zipper II DUF4201 PF13870.6 gi|14600971|ref|NP_147497.1| - 0.0025 17.5 59.6 0.074 12.8 17.6 3.9 1 1 2 3 3 2 2 Domain of unknown function (DUF4201) FliJ PF02050.16 gi|14600971|ref|NP_147497.1| - 0.003 17.8 12.0 0.003 17.8 12.0 3.7 1 1 2 3 3 3 1 Flagellar FliJ protein DUF2203 PF09969.9 gi|14600971|ref|NP_147497.1| - 0.0032 18.2 4.0 0.0032 18.2 4.0 3.6 1 1 2 4 4 4 1 Uncharacterized conserved protein (DUF2203) HOOK PF05622.12 gi|14600971|ref|NP_147497.1| - 0.0033 15.7 52.9 0.0053 15.0 40.9 2.1 1 1 1 2 2 2 1 HOOK protein LPP PF04728.13 gi|14600971|ref|NP_147497.1| - 0.0035 17.7 12.3 13 6.3 0.1 5.4 3 1 3 6 6 5 0 Lipoprotein leucine-zipper Dynactin_p22 PF07426.11 gi|14600971|ref|NP_147497.1| - 0.0048 16.8 0.8 0.0048 16.8 0.8 4.0 2 2 1 3 3 3 1 Dynactin subunit p22 Bacillus_HBL PF05791.11 gi|14600971|ref|NP_147497.1| - 0.0048 16.7 17.3 0.065 13.1 3.0 3.1 2 1 1 3 3 3 2 Bacillus haemolytic enterotoxin (HBL) HemX PF04375.14 gi|14600971|ref|NP_147497.1| - 0.007 15.7 2.9 0.007 15.7 2.9 3.2 1 1 2 3 3 3 1 HemX, putative uroporphyrinogen-III C-methyltransferase DUF3584 PF12128.8 gi|14600971|ref|NP_147497.1| - 0.0074 13.9 40.1 0.0098 13.5 40.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|14600971|ref|NP_147497.1| - 0.0079 16.4 54.4 0.32 11.2 19.4 5.0 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.12 gi|14600971|ref|NP_147497.1| - 0.009 16.4 14.6 0.009 16.4 14.6 3.9 2 1 2 4 4 3 3 Centromere protein H (CENP-H) Jnk-SapK_ap_N PF09744.9 gi|14600971|ref|NP_147497.1| - 0.0098 16.1 5.8 0.0098 16.1 5.8 3.7 1 1 2 3 3 3 2 JNK_SAPK-associated protein-1 TMF_DNA_bd PF12329.8 gi|14600971|ref|NP_147497.1| - 0.01 15.8 3.7 0.01 15.8 3.7 6.3 2 1 4 6 6 4 0 TATA element modulatory factor 1 DNA binding NPV_P10 PF05531.12 gi|14600971|ref|NP_147497.1| - 0.012 16.1 6.4 0.42 11.1 2.6 3.6 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein ZapB PF06005.12 gi|14600971|ref|NP_147497.1| - 0.012 16.1 11.2 0.012 16.1 11.2 5.7 2 2 4 6 6 5 0 Cell division protein ZapB Baculo_PEP_C PF04513.12 gi|14600971|ref|NP_147497.1| - 0.012 15.6 9.0 0.023 14.7 2.5 3.2 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus XhlA PF10779.9 gi|14600971|ref|NP_147497.1| - 0.013 15.7 4.7 0.013 15.7 4.7 5.7 3 2 5 8 8 5 0 Haemolysin XhlA YabA PF06156.13 gi|14600971|ref|NP_147497.1| - 0.017 15.7 5.2 0.017 15.7 5.2 5.0 1 1 4 5 5 5 0 Initiation control protein YabA ATG16 PF08614.11 gi|14600971|ref|NP_147497.1| - 0.018 15.3 52.7 0.11 12.8 19.2 4.2 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.12 gi|14600971|ref|NP_147497.1| - 0.018 15.1 35.9 0.027 14.5 5.7 3.9 1 1 3 4 4 4 0 Laminin Domain II EzrA PF06160.12 gi|14600971|ref|NP_147497.1| - 0.019 13.2 44.0 0.018 13.2 21.1 3.0 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA ABC_tran_CTD PF16326.5 gi|14600971|ref|NP_147497.1| - 0.02 15.1 4.8 0.02 15.1 4.8 6.0 2 2 2 5 5 3 0 ABC transporter C-terminal domain DUF16 PF01519.16 gi|14600971|ref|NP_147497.1| - 0.028 14.9 4.8 0.028 14.9 4.8 4.4 1 1 2 3 3 2 0 Protein of unknown function DUF16 DUF4407 PF14362.6 gi|14600971|ref|NP_147497.1| - 0.028 13.8 27.6 0.07 12.5 9.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Atg14 PF10186.9 gi|14600971|ref|NP_147497.1| - 0.032 13.3 48.5 0.055 12.5 18.0 2.3 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 MtrB PF05440.12 gi|14600971|ref|NP_147497.1| - 0.04 14.3 2.7 3 8.3 0.1 3.7 2 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF3450 PF11932.8 gi|14600971|ref|NP_147497.1| - 0.042 13.2 38.1 0.039 13.2 11.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) V_ATPase_I PF01496.19 gi|14600971|ref|NP_147497.1| - 0.06 11.3 24.8 0.082 10.8 24.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_13 PF13166.6 gi|14600971|ref|NP_147497.1| - 0.069 11.8 36.9 0.16 10.6 25.4 2.2 1 1 1 2 2 2 0 AAA domain Sec34 PF04136.15 gi|14600971|ref|NP_147497.1| - 0.07 13.0 21.7 0.091 12.6 4.3 3.8 2 2 1 3 3 3 0 Sec34-like family DUF2935 PF11155.8 gi|14600971|ref|NP_147497.1| - 0.074 13.4 13.6 0.36 11.2 2.2 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF2935) Syntaxin PF00804.25 gi|14600971|ref|NP_147497.1| - 0.081 12.6 42.3 0.022 14.4 18.7 2.6 1 1 1 3 3 2 0 Syntaxin MCPsignal PF00015.21 gi|14600971|ref|NP_147497.1| - 0.089 12.6 13.1 0.022 14.6 4.1 2.6 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain MscS_porin PF12795.7 gi|14600971|ref|NP_147497.1| - 0.14 11.6 37.3 0.045 13.3 13.4 3.3 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain CENP-F_leu_zip PF10473.9 gi|14600971|ref|NP_147497.1| - 0.32 11.0 65.4 0.082 12.9 22.7 3.3 1 1 3 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spectrin PF00435.21 gi|14600971|ref|NP_147497.1| - 0.34 11.4 35.9 0.71 10.4 10.7 3.7 2 1 1 3 3 3 0 Spectrin repeat AATF-Che1 PF13339.6 gi|14600971|ref|NP_147497.1| - 0.41 11.3 24.9 2.9 8.6 9.8 3.3 2 1 0 2 2 2 0 Apoptosis antagonizing transcription factor KASH_CCD PF14662.6 gi|14600971|ref|NP_147497.1| - 0.42 10.4 59.1 0.13 12.1 29.7 2.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH BRE1 PF08647.11 gi|14600971|ref|NP_147497.1| - 0.47 10.6 49.8 1 9.5 15.8 4.0 2 1 0 3 3 3 0 BRE1 E3 ubiquitin ligase YkyA PF10368.9 gi|14600971|ref|NP_147497.1| - 0.49 10.0 47.4 0.18 11.4 16.6 2.7 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein HAP1_N PF04849.13 gi|14600971|ref|NP_147497.1| - 0.6 9.2 49.6 0.15 11.2 16.8 2.7 2 1 0 2 2 2 0 HAP1 N-terminal conserved region COG6 PF06419.11 gi|14600971|ref|NP_147497.1| - 0.62 8.2 24.1 0.16 10.2 2.7 3.1 2 1 1 3 3 3 0 Conserved oligomeric complex COG6 FUSC PF04632.12 gi|14600971|ref|NP_147497.1| - 0.69 8.4 16.9 0.51 8.8 5.8 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein family FapA PF03961.13 gi|14600971|ref|NP_147497.1| - 0.7 8.4 49.8 0.39 9.3 16.5 3.1 1 1 2 3 3 3 0 Flagellar Assembly Protein A PI_PP_I PF18363.1 gi|14600971|ref|NP_147497.1| - 0.76 10.0 3.4 14 6.0 0.2 3.0 2 1 1 3 3 3 0 Phosphoinositide phosphatase insertion domain FlaC_arch PF05377.11 gi|14600971|ref|NP_147497.1| - 0.88 10.0 38.5 0.58 10.6 4.4 6.5 4 2 1 5 5 5 0 Flagella accessory protein C (FlaC) ADIP PF11559.8 gi|14600971|ref|NP_147497.1| - 0.92 9.6 42.8 1.3 9.1 14.2 3.3 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding TMPIT PF07851.13 gi|14600971|ref|NP_147497.1| - 1.1 8.5 31.4 0.098 11.9 6.0 2.9 1 1 2 3 3 3 0 TMPIT-like protein DUF3829 PF12889.7 gi|14600971|ref|NP_147497.1| - 1.2 8.5 20.3 0.012 15.2 9.0 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF3829) DUF4988 PF16378.5 gi|14600971|ref|NP_147497.1| - 1.2 8.7 12.9 3.6 7.2 0.7 3.6 2 1 2 4 4 4 0 Domain of unknown function SlyX PF04102.12 gi|14600971|ref|NP_147497.1| - 1.3 9.7 33.5 0.1 13.2 1.0 5.7 2 2 2 4 4 3 0 SlyX DUF4618 PF15397.6 gi|14600971|ref|NP_147497.1| - 1.5 8.2 45.1 2.3 7.6 9.5 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Fez1 PF06818.15 gi|14600971|ref|NP_147497.1| - 1.8 9.0 50.0 0.37 11.2 12.4 3.1 1 1 2 3 3 3 0 Fez1 TelA PF05816.11 gi|14600971|ref|NP_147497.1| - 2.1 7.3 36.6 0.087 11.9 14.2 3.0 1 1 1 2 2 1 0 Toxic anion resistance protein (TelA) Mod_r PF07200.13 gi|14600971|ref|NP_147497.1| - 2.2 8.4 43.9 1e+02 3.0 20.4 4.3 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF1664 PF07889.12 gi|14600971|ref|NP_147497.1| - 2.4 8.2 28.8 0.19 11.8 8.2 3.9 1 1 2 4 4 4 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|14600971|ref|NP_147497.1| - 2.4 8.3 34.2 1.8 8.7 12.7 3.7 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family ERM PF00769.19 gi|14600971|ref|NP_147497.1| - 2.7 7.8 63.3 0.28 11.0 24.7 3.0 1 1 2 3 3 2 0 Ezrin/radixin/moesin family IFT57 PF10498.9 gi|14600971|ref|NP_147497.1| - 3.1 6.7 38.6 0.15 11.0 17.7 2.3 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 APG6_N PF17675.1 gi|14600971|ref|NP_147497.1| - 3.6 8.1 68.0 1.5 9.3 26.8 4.8 1 1 3 4 4 4 0 Apg6 coiled-coil region APG17 PF04108.12 gi|14600971|ref|NP_147497.1| - 3.8 6.5 30.8 0.18 10.9 4.6 3.2 2 1 1 3 3 3 0 Autophagy protein Apg17 STAT_alpha PF01017.20 gi|14600971|ref|NP_147497.1| - 4.3 7.2 33.1 0.02 14.8 5.3 3.4 2 1 0 2 2 1 0 STAT protein, all-alpha domain SKA2 PF16740.5 gi|14600971|ref|NP_147497.1| - 4.6 7.1 35.5 0.95 9.3 4.7 4.6 2 2 1 3 3 3 0 Spindle and kinetochore-associated protein 2 DivIC PF04977.15 gi|14600971|ref|NP_147497.1| - 4.8 7.0 51.6 1.9 8.3 8.3 6.4 3 2 2 5 5 4 0 Septum formation initiator HAUS-augmin3 PF14932.6 gi|14600971|ref|NP_147497.1| - 5.2 6.6 40.0 0.17 11.4 12.1 3.1 1 1 3 4 4 4 0 HAUS augmin-like complex subunit 3 MbeD_MobD PF04899.12 gi|14600971|ref|NP_147497.1| - 6 7.1 12.1 0.86 9.8 0.9 4.3 2 1 2 4 4 4 0 MbeD/MobD like 5_nucleotid PF05761.14 gi|14600971|ref|NP_147497.1| - 6.2 5.6 29.0 0.017 14.1 3.7 2.8 1 1 1 3 3 3 0 5' nucleotidase family DUF5082 PF16888.5 gi|14600971|ref|NP_147497.1| - 6.4 7.1 42.6 0.59 10.4 8.9 4.8 3 2 2 5 5 4 0 Domain of unknown function (DUF5082) MAD PF05557.13 gi|14600971|ref|NP_147497.1| - 7 4.9 54.0 1.3 7.3 42.7 2.0 1 1 1 2 2 2 0 Mitotic checkpoint protein PRANC PF09372.10 gi|14600971|ref|NP_147497.1| - 7 7.0 7.9 0.79 10.1 1.0 2.7 2 2 0 2 2 2 0 PRANC domain HAUS6_N PF14661.6 gi|14600971|ref|NP_147497.1| - 7.1 6.1 35.4 0.39 10.3 10.4 3.1 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus GldM_N PF12081.8 gi|14600971|ref|NP_147497.1| - 8.3 6.4 23.1 12 5.9 8.4 3.1 2 2 0 2 2 2 0 GldM N-terminal domain DUF4665 PF15679.5 gi|14600971|ref|NP_147497.1| - 8.7 7.0 21.7 0.16 12.6 4.1 3.7 2 2 1 3 3 3 0 Domain of unknown function (DUF4665) ATP_bind_1 PF03029.17 gi|118431199|ref|NP_147498.2| - 5.6e-61 206.4 0.0 6.6e-61 206.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|118431199|ref|NP_147498.2| - 2.1e-05 25.0 0.0 7.9e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain MeaB PF03308.16 gi|118431199|ref|NP_147498.2| - 0.00017 20.7 0.2 0.0003 19.8 0.2 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|118431199|ref|NP_147498.2| - 0.00034 21.1 0.0 0.00064 20.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|118431199|ref|NP_147498.2| - 0.0012 18.7 0.0 0.1 12.3 0.0 2.4 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|118431199|ref|NP_147498.2| - 0.0017 18.4 0.0 0.0081 16.2 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|118431199|ref|NP_147498.2| - 0.0034 17.1 0.1 0.0068 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|118431199|ref|NP_147498.2| - 0.0076 16.2 0.1 0.18 11.7 0.1 2.2 2 0 0 2 2 2 1 NTPase CbiA PF01656.23 gi|118431199|ref|NP_147498.2| - 0.014 15.5 0.0 0.025 14.6 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 gi|118431199|ref|NP_147498.2| - 0.02 15.1 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|118431199|ref|NP_147498.2| - 0.032 13.4 0.3 0.056 12.6 0.3 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|118431199|ref|NP_147498.2| - 0.036 13.3 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Herpes_Helicase PF02689.14 gi|118431199|ref|NP_147498.2| - 0.044 11.7 0.3 0.057 11.3 0.3 1.1 1 0 0 1 1 1 0 Helicase APS_kinase PF01583.20 gi|118431199|ref|NP_147498.2| - 0.048 13.6 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_29 PF13555.6 gi|118431199|ref|NP_147498.2| - 0.055 13.2 0.5 0.11 12.3 0.5 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|118431199|ref|NP_147498.2| - 0.056 13.4 0.3 0.48 10.3 0.2 2.3 3 0 0 3 3 3 0 RsgA GTPase DUF87 PF01935.17 gi|118431199|ref|NP_147498.2| - 0.061 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Dynamin_N PF00350.23 gi|118431199|ref|NP_147498.2| - 0.079 13.0 0.9 0.89 9.6 0.2 2.1 2 0 0 2 2 2 0 Dynamin family Rnk_N PF14760.6 gi|118431199|ref|NP_147498.2| - 0.079 13.4 0.8 0.2 12.2 0.8 1.7 1 0 0 1 1 1 0 Rnk N-terminus NACHT PF05729.12 gi|118431199|ref|NP_147498.2| - 0.13 12.2 0.2 0.24 11.3 0.2 1.4 1 0 0 1 1 1 0 NACHT domain DUF815 PF05673.13 gi|118431199|ref|NP_147498.2| - 0.17 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|118431199|ref|NP_147498.2| - 0.22 10.7 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ParA PF10609.9 gi|118431199|ref|NP_147498.2| - 2.1 7.8 4.1 2.1 7.8 0.4 2.4 2 1 1 3 3 3 0 NUBPL iron-transfer P-loop NTPase COX2 PF00116.20 gi|118431200|ref|NP_147499.2| - 7.5e-17 61.3 0.4 2.2e-15 56.6 0.0 2.2 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain COX1 PF00115.20 gi|118431201|ref|NP_147500.2| - 2.1e-133 445.3 60.8 2.1e-133 445.3 60.8 2.9 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|118431201|ref|NP_147500.2| - 2.9e-20 73.2 16.3 2.9e-20 73.2 16.3 2.8 2 1 0 2 2 2 1 Cytochrome c oxidase subunit III STE PF02200.16 gi|118431201|ref|NP_147500.2| - 0.2 12.1 0.4 0.44 11.0 0.4 1.5 1 0 0 1 1 1 0 STE like transcription factor COX4_pro PF03626.14 gi|118431202|ref|NP_147501.2| - 1.5e-10 41.4 7.5 1.5e-10 41.4 7.5 1.3 2 0 0 2 2 2 1 Prokaryotic Cytochrome C oxidase subunit IV DUF3487 PF11990.8 gi|118431202|ref|NP_147501.2| - 0.68 9.8 4.6 0.36 10.7 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) PRA1 PF03208.19 gi|118431202|ref|NP_147501.2| - 0.76 9.4 5.7 1.1 8.8 5.7 1.3 1 1 0 1 1 1 0 PRA1 family protein SCO1-SenC PF02630.14 gi|118431203|ref|NP_147502.2| - 6e-10 39.2 0.0 8.5e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC Phage_holin_2_1 PF04971.12 gi|118431203|ref|NP_147502.2| - 0.024 14.7 0.2 0.048 13.7 0.2 1.5 1 0 0 1 1 1 0 Bacteriophage P21 holin S Methyltrn_RNA_2 PF04013.12 gi|14600977|ref|NP_147503.1| - 5.1e-62 209.1 0.0 5.8e-62 208.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase PEMT PF04191.13 gi|14600978|ref|NP_147504.1| - 1.1e-07 32.1 1.8 3.5e-07 30.6 0.0 2.2 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|14600978|ref|NP_147504.1| - 2e-05 24.9 0.1 2e-05 24.9 0.1 1.9 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Sulf_transp PF04143.14 gi|14600978|ref|NP_147504.1| - 1.2 8.7 7.7 0.42 10.1 4.8 1.6 2 0 0 2 2 2 0 Sulphur transport DAO PF01266.24 gi|118431204|ref|NP_147505.2| - 1e-20 74.6 3.9 1.4e-20 74.2 3.9 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|118431204|ref|NP_147505.2| - 1.5e-05 25.2 0.2 3.1e-05 24.1 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|118431204|ref|NP_147505.2| - 3.1e-05 23.2 0.4 0.00089 18.4 0.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|118431204|ref|NP_147505.2| - 8.3e-05 21.5 0.1 0.00013 20.8 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|118431204|ref|NP_147505.2| - 8.3e-05 21.9 0.5 0.00021 20.7 0.5 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|118431204|ref|NP_147505.2| - 0.00011 21.5 0.3 0.00019 20.8 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|118431204|ref|NP_147505.2| - 0.0002 20.6 0.4 0.00028 20.1 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|118431204|ref|NP_147505.2| - 0.017 15.7 0.1 0.045 14.3 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|118431204|ref|NP_147505.2| - 0.022 14.0 0.1 0.036 13.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.7 gi|118431204|ref|NP_147505.2| - 0.035 13.4 0.4 0.048 13.0 0.4 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|118431204|ref|NP_147505.2| - 0.15 12.0 0.3 0.25 11.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|118431204|ref|NP_147505.2| - 0.59 9.3 2.4 0.71 9.1 0.1 2.1 2 1 1 3 3 3 0 Thi4 family SurE PF01975.17 gi|118431205|ref|NP_147506.2| - 1.6e-39 135.7 0.0 2e-39 135.4 0.0 1.0 1 0 0 1 1 1 1 Survival protein SurE Glyco_trans_4_4 PF13579.6 gi|118431205|ref|NP_147506.2| - 0.023 15.1 0.0 0.051 14.0 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|118431205|ref|NP_147506.2| - 0.038 14.0 0.0 0.059 13.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|118431205|ref|NP_147506.2| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Transglut_core PF01841.19 gi|118431206|ref|NP_147507.2| - 0.017 15.6 0.1 0.035 14.5 0.1 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily DAHP_snth_FXD PF18152.1 gi|118431206|ref|NP_147507.2| - 0.027 14.3 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain Phage_integrase PF00589.22 gi|14600982|ref|NP_147508.1| - 2e-33 115.6 0.0 3.5e-33 114.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|14600982|ref|NP_147508.1| - 1.9e-05 24.8 1.2 0.00022 21.5 0.1 2.9 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|14600982|ref|NP_147508.1| - 6.1e-05 23.4 0.1 0.11 12.9 0.0 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 gi|14600982|ref|NP_147508.1| - 0.11 11.4 0.2 0.43 9.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Aldedh PF00171.22 gi|118431207|ref|NP_147509.2| - 4.2e-100 335.5 0.0 4.8e-100 335.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Adeno_E1B_55K PF01696.17 gi|118431207|ref|NP_147509.2| - 0.12 11.0 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen tRNA-synt_2b PF00587.25 gi|118431208|ref|NP_147510.2| - 8.8e-45 152.9 0.0 1.6e-44 152.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|118431208|ref|NP_147510.2| - 4.1e-09 36.5 0.3 9.7e-09 35.3 0.2 1.7 2 0 0 2 2 2 1 Anticodon binding domain DAO_C PF16901.5 gi|118431208|ref|NP_147510.2| - 0.12 12.3 0.0 3.6 7.5 0.0 2.3 2 0 0 2 2 2 0 C-terminal domain of alpha-glycerophosphate oxidase Q_salvage PF10343.9 gi|14600985|ref|NP_147511.1| - 0.0001 22.0 0.0 0.0012 18.5 0.0 2.1 1 1 0 1 1 1 1 Potential Queuosine, Q, salvage protein family AGOG PF09171.10 gi|14600985|ref|NP_147511.1| - 0.00016 21.1 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Met_10 PF02475.16 gi|118431210|ref|NP_147514.2| - 1.1e-49 169.0 0.0 1.5e-49 168.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|118431210|ref|NP_147514.2| - 1.2e-05 24.7 0.0 1.5e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|118431210|ref|NP_147514.2| - 2.5e-05 23.8 0.0 3.4e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|118431210|ref|NP_147514.2| - 0.00014 21.5 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|118431210|ref|NP_147514.2| - 0.0049 16.4 0.0 0.0095 15.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|118431210|ref|NP_147514.2| - 0.0061 16.5 0.0 0.0094 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|118431210|ref|NP_147514.2| - 0.013 15.1 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|118431210|ref|NP_147514.2| - 0.033 13.9 0.0 0.046 13.4 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_16 PF10294.9 gi|118431210|ref|NP_147514.2| - 0.06 13.1 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|118431210|ref|NP_147514.2| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TYW3 PF02676.14 gi|14600989|ref|NP_147515.1| - 1.1e-26 93.5 0.0 4e-26 91.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase TYW3 Phage_integrase PF00589.22 gi|118431212|ref|NP_147516.2| - 2.7e-06 27.3 0.1 4.8e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 gi|118431212|ref|NP_147516.2| - 0.0014 18.6 0.2 0.011 15.7 0.2 2.3 1 1 0 1 1 1 1 Archaeal phage integrase DUF3435 PF11917.8 gi|118431212|ref|NP_147516.2| - 0.089 11.7 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Rnk_N PF14760.6 gi|118431212|ref|NP_147516.2| - 0.11 13.0 1.0 1.2 9.7 0.0 2.9 2 0 0 2 2 2 0 Rnk N-terminus TrmB PF01978.19 gi|14600993|ref|NP_147519.1| - 0.0017 18.2 0.4 0.36 10.8 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|14600993|ref|NP_147519.1| - 0.0034 17.0 0.1 0.018 14.7 0.1 2.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family AbiEi_4 PF13338.6 gi|14600993|ref|NP_147519.1| - 0.0035 17.5 2.1 0.0035 17.5 2.1 2.7 3 0 0 3 3 3 1 Transcriptional regulator, AbiEi antitoxin LexA_DNA_bind PF01726.16 gi|14600993|ref|NP_147519.1| - 0.1 12.4 0.3 1.3 8.8 0.0 2.7 3 0 0 3 3 3 0 LexA DNA binding domain DUF505 PF04458.12 gi|14600993|ref|NP_147519.1| - 0.12 10.7 0.0 0.67 8.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF505) HTH_24 PF13412.6 gi|14600993|ref|NP_147519.1| - 0.13 11.9 1.5 2.1 8.0 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|14600993|ref|NP_147519.1| - 0.24 11.3 5.1 2.3 8.2 0.3 3.5 3 1 0 3 3 3 0 MarR family HTH_33 PF13592.6 gi|14600993|ref|NP_147519.1| - 0.25 11.0 3.2 0.55 9.9 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn helix Peptidase_M48 PF01435.18 gi|14600995|ref|NP_147521.1| - 4.1e-12 46.3 0.1 5.5e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M48 DUF45 PF01863.17 gi|14600995|ref|NP_147521.1| - 0.018 15.1 0.5 0.036 14.1 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF45 Peptidase_U49 PF10463.9 gi|14600995|ref|NP_147521.1| - 0.057 13.2 2.2 0.069 12.9 0.9 1.8 1 1 1 2 2 2 0 Peptidase U49 DUF2268 PF10026.9 gi|14600995|ref|NP_147521.1| - 0.064 12.8 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Phage_int_SAM_6 PF18644.1 gi|118431215|ref|NP_147522.2| - 0.0078 16.2 1.3 0.032 14.2 0.3 2.5 2 1 0 2 2 2 1 Phage integrase SAM-like domain Glucodextran_C PF09985.9 gi|118431215|ref|NP_147522.2| - 0.071 12.5 0.1 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 C-terminal binding-module, SLH-like, of glucodextranase DUF4320 PF14208.6 gi|118431215|ref|NP_147522.2| - 0.074 13.1 3.1 2.1 8.4 0.8 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4320) m04gp34like PF12216.8 gi|14600997|ref|NP_147523.1| - 0.18 11.3 1.1 14 5.2 0.3 2.3 2 0 0 2 2 2 0 Immune evasion protein DUF2721 PF11026.8 gi|14600997|ref|NP_147523.1| - 1.8 8.5 5.7 2.5 8.0 1.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) Saf_2TM PF18303.1 gi|14600997|ref|NP_147523.1| - 8.7 5.9 7.7 4.4 6.9 2.7 2.2 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain UPF0524 PF15823.5 gi|14600998|ref|NP_147524.1| - 5.7 6.3 6.2 6.5 6.1 6.2 1.1 1 0 0 1 1 1 0 UPF0524 of C3orf70 DUF996 PF06195.13 gi|118431216|ref|YP_874852.1| - 0.0031 17.8 0.8 0.0038 17.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF996) PQ-loop PF04193.14 gi|118431216|ref|YP_874852.1| - 0.064 13.0 4.2 0.17 11.7 0.2 2.1 2 0 0 2 2 2 0 PQ loop repeat TctB PF07331.11 gi|118431216|ref|YP_874852.1| - 0.47 10.7 7.9 0.57 10.5 0.2 2.1 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family FeoB_C PF07664.12 gi|118431216|ref|YP_874852.1| - 2.2 8.1 7.6 4.9 6.9 0.8 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus ABC2_membrane_3 PF12698.7 gi|118431216|ref|YP_874852.1| - 4.4 6.3 7.3 5.3 6.1 7.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2768 PF10966.8 gi|118431216|ref|YP_874852.1| - 4.4 7.8 11.4 2.9 8.4 3.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2768) DUF4750 PF15938.5 gi|118431216|ref|YP_874852.1| - 6.7 6.5 9.4 1.6 8.4 4.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4750) DUF2207 PF09972.9 gi|118431216|ref|YP_874852.1| - 9.1 4.9 5.1 11 4.7 5.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DNA_pol_lambd_f PF10391.9 gi|14601001|ref|NP_147527.1| - 0.16 11.9 0.0 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda AAA_16 PF13191.6 gi|118431219|ref|NP_147530.2| - 0.059 13.7 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.9 gi|118431219|ref|NP_147530.2| - 0.066 12.4 0.0 0.094 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|118431219|ref|NP_147530.2| - 0.12 12.8 0.0 0.34 11.3 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Tim17 PF02466.19 gi|118431220|ref|YP_874853.1| - 0.0011 19.3 0.0 0.0017 18.7 0.0 1.3 1 1 0 1 1 1 1 Tim17/Tim22/Tim23/Pmp24 family DUF3566 PF12089.8 gi|118431220|ref|YP_874853.1| - 0.011 16.1 4.3 0.015 15.6 4.3 1.2 1 0 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) Rz1 PF06085.11 gi|118431220|ref|YP_874853.1| - 0.018 14.8 0.1 0.041 13.6 0.1 1.6 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor HlyD PF00529.20 gi|118431220|ref|YP_874853.1| - 0.37 10.7 0.8 2.3 8.2 0.6 1.9 2 0 0 2 2 2 0 HlyD membrane-fusion protein of T1SS Orf78 PF06024.12 gi|118431220|ref|YP_874853.1| - 0.44 10.9 1.8 0.52 10.6 0.0 1.8 2 0 0 2 2 2 0 Orf78 (ac78) HemY_N PF07219.13 gi|118431220|ref|YP_874853.1| - 7.4 6.8 8.0 3 8.1 2.8 2.0 2 0 0 2 2 2 0 HemY protein N-terminus DUF1206 PF06724.11 gi|118431223|ref|NP_147541.2| - 0.72 10.0 12.3 0.8 9.8 11.7 1.4 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) CTV_P6 PF06706.11 gi|14601017|ref|NP_147543.1| - 2.2 8.1 8.1 0.66 9.7 3.1 2.3 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Phage_holin_3_6 PF07332.11 gi|118431224|ref|YP_874854.1| - 2.9 7.9 12.9 4.7 7.3 12.9 1.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|118431224|ref|YP_874854.1| - 4.4 5.9 4.5 5 5.8 4.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2613 PF11021.8 gi|118431224|ref|YP_874854.1| - 4.8 7.4 7.7 2 8.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) CTV_P6 PF06706.11 gi|118431224|ref|YP_874854.1| - 6 6.7 10.9 1.7 8.4 5.3 2.2 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Phage_holin_2_3 PF16080.5 gi|118431228|ref|NP_147553.2| - 3.2 7.6 5.4 2.6 7.9 2.4 2.2 2 0 0 2 2 2 0 Bacteriophage holin family HP1 Phage_sheath_1 PF04984.14 gi|118431231|ref|NP_147557.2| - 0.13 12.2 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Phage tail sheath protein subtilisin-like domain Attachment_P66 PF11263.8 gi|14601034|ref|NP_147560.1| - 0.13 11.5 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi attachment protein P66 DUF1422 PF07226.11 gi|118431233|ref|NP_147561.2| - 0.087 12.8 8.7 0.57 10.2 1.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) B12D PF06522.11 gi|118431233|ref|NP_147561.2| - 2.4 8.0 3.7 1.2 9.0 0.4 2.1 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Phage_TTP_13 PF16463.5 gi|118431234|ref|YP_874857.1| - 0.017 14.6 0.0 0.045 13.3 0.0 1.7 2 0 0 2 2 2 0 Phage tail tube protein family ParG PF09274.10 gi|118431235|ref|NP_147562.2| - 0.11 12.7 0.1 0.15 12.3 0.1 1.2 1 0 0 1 1 1 0 ParG KRAB PF01352.27 gi|118431235|ref|NP_147562.2| - 0.13 12.0 0.2 0.21 11.2 0.2 1.3 1 0 0 1 1 1 0 KRAB box DNA_methylase PF00145.17 gi|118431236|ref|NP_147563.2| - 3.7e-52 177.8 0.0 9.3e-51 173.1 0.0 2.6 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase HhH-GPD PF00730.25 gi|118431238|ref|NP_147565.2| - 1.1e-14 54.8 0.0 1.5e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|118431238|ref|NP_147565.2| - 1.3e-07 31.7 7.2 3.4e-07 30.4 7.2 1.8 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|118431238|ref|NP_147565.2| - 1.5e-05 24.6 0.0 3.7e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Pox_H7 PF04787.12 gi|118431239|ref|NP_147567.2| - 0.072 13.6 0.0 1.1 9.7 0.0 2.3 2 0 0 2 2 2 0 Late protein H7 AAA_14 PF13173.6 gi|14601042|ref|NP_147568.1| - 9.1e-06 25.7 0.1 2e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|14601042|ref|NP_147568.1| - 0.00051 20.5 0.0 0.0041 17.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|14601042|ref|NP_147568.1| - 0.0013 19.1 0.0 0.0044 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 gi|14601042|ref|NP_147568.1| - 0.0015 18.2 0.0 0.0037 16.9 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|14601042|ref|NP_147568.1| - 0.025 15.1 0.0 0.28 11.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|14601042|ref|NP_147568.1| - 0.031 14.1 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein PglD_N PF17836.1 gi|14601042|ref|NP_147568.1| - 0.049 14.3 0.2 0.13 12.9 0.2 1.7 1 0 0 1 1 1 0 PglD N-terminal domain AAA_19 PF13245.6 gi|14601042|ref|NP_147568.1| - 0.059 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Autoind_bind PF03472.15 gi|14601042|ref|NP_147568.1| - 0.074 12.5 0.0 0.64 9.5 0.0 2.1 2 0 0 2 2 2 0 Autoinducer binding domain AAA_24 PF13479.6 gi|14601042|ref|NP_147568.1| - 0.079 12.7 0.1 0.41 10.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|14601042|ref|NP_147568.1| - 0.08 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin CwsA PF10814.8 gi|14601042|ref|NP_147568.1| - 0.11 12.6 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA PRK PF00485.18 gi|14601042|ref|NP_147568.1| - 0.14 11.9 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|14601042|ref|NP_147568.1| - 0.2 11.4 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|14601042|ref|NP_147568.1| - 0.22 11.4 1.3 0.56 10.1 0.4 2.1 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea DUF1495 PF07381.11 gi|14601043|ref|NP_147569.1| - 0.0019 18.0 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) TetR_N PF00440.23 gi|14601043|ref|NP_147569.1| - 0.0038 17.0 0.0 0.006 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_45 PF14947.6 gi|14601043|ref|NP_147569.1| - 0.011 15.7 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|14601043|ref|NP_147569.1| - 0.012 16.1 0.2 0.016 15.6 0.2 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|14601043|ref|NP_147569.1| - 0.15 11.8 0.0 0.29 10.9 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain HTH_IclR PF09339.10 gi|118431240|ref|YP_874858.1| - 4.7e-09 35.9 0.0 6.7e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|118431240|ref|YP_874858.1| - 9.7e-09 35.0 0.3 1.3e-08 34.6 0.3 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|118431240|ref|YP_874858.1| - 8.6e-07 28.7 0.0 1.2e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|118431240|ref|YP_874858.1| - 8e-06 25.3 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|118431240|ref|YP_874858.1| - 1.3e-05 25.2 0.1 2.1e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|118431240|ref|YP_874858.1| - 6.5e-05 22.7 0.0 8.6e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|118431240|ref|YP_874858.1| - 0.00034 21.0 0.0 0.00042 20.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HemN_C PF06969.16 gi|118431240|ref|YP_874858.1| - 0.0006 19.8 0.0 0.00068 19.6 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|118431240|ref|YP_874858.1| - 0.0039 17.1 0.0 0.0054 16.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|118431240|ref|YP_874858.1| - 0.012 15.6 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|118431240|ref|YP_874858.1| - 0.014 15.7 0.0 0.024 15.0 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator DUF4777 PF16007.5 gi|118431240|ref|YP_874858.1| - 0.015 15.6 0.0 0.031 14.5 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4777) HTH_1 PF00126.27 gi|118431240|ref|YP_874858.1| - 0.022 14.7 0.5 0.041 13.8 0.1 1.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|118431240|ref|YP_874858.1| - 0.038 14.1 0.2 0.068 13.3 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF742 PF05331.11 gi|118431240|ref|YP_874858.1| - 0.04 13.7 0.2 0.046 13.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_45 PF14947.6 gi|118431240|ref|YP_874858.1| - 0.044 13.8 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.22 gi|118431240|ref|YP_874858.1| - 0.05 13.5 0.0 0.063 13.2 0.0 1.1 1 0 0 1 1 1 0 MarR family MotA_activ PF09114.10 gi|118431240|ref|YP_874858.1| - 0.06 13.5 0.0 0.071 13.2 0.0 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain SMC_ScpB PF04079.16 gi|118431240|ref|YP_874858.1| - 0.072 12.7 0.0 0.085 12.5 0.0 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB PrpR_N PF06506.11 gi|118431241|ref|YP_874859.1| - 0.00021 20.9 0.2 0.078 12.6 0.0 2.0 2 0 0 2 2 2 2 Propionate catabolism activator Alanine_zipper PF11839.8 gi|14601046|ref|NP_147572.1| - 0.056 13.8 7.7 0.09 13.1 7.7 1.3 1 0 0 1 1 1 0 Alanine-zipper, major outer membrane lipoprotein Spc7 PF08317.11 gi|14601046|ref|NP_147572.1| - 0.35 9.7 2.8 0.44 9.4 2.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein CorA PF01544.18 gi|14601046|ref|NP_147572.1| - 0.35 10.1 1.8 0.54 9.5 1.8 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein RHH_1 PF01402.21 gi|118431242|ref|YP_874860.1| - 1.1e-06 28.4 0.1 3.5e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RelB PF04221.12 gi|118431242|ref|YP_874860.1| - 0.16 11.9 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 RelB antitoxin EAP30 PF04157.16 gi|118431243|ref|YP_874861.1| - 0.052 12.8 0.0 0.054 12.8 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family DUF1905 PF08922.11 gi|118431246|ref|YP_874863.1| - 0.0059 16.6 0.0 0.012 15.7 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1905) Hydrolase_3 PF08282.12 gi|118431248|ref|NP_147576.2| - 0.043 13.6 0.0 0.49 10.1 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Osmo_MPGsynth PF09488.10 gi|118431249|ref|NP_147578.2| - 4.1e-121 404.3 0.0 5e-121 404.1 0.0 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) DUF3368 PF11848.8 gi|14601053|ref|NP_147579.1| - 2.8e-14 52.6 0.9 7.6e-14 51.2 0.9 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) UBA_3 PF09288.10 gi|14601053|ref|NP_147579.1| - 0.022 14.5 1.6 0.75 9.6 0.3 2.5 1 1 1 2 2 2 0 Fungal ubiquitin-associated domain UPF0175 PF03683.13 gi|118431250|ref|NP_147580.2| - 6e-17 61.1 0.1 6.8e-17 61.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) CopD PF05425.13 gi|14601055|ref|NP_147581.1| - 1.8e-18 66.8 6.3 1.8e-18 66.8 6.3 1.4 2 0 0 2 2 2 1 Copper resistance protein D DUF2214 PF09980.9 gi|14601055|ref|NP_147581.1| - 1.3e-06 28.3 4.7 2e-06 27.7 4.7 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2214) DUF3169 PF11368.8 gi|14601055|ref|NP_147581.1| - 0.00017 21.2 0.0 0.00032 20.3 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3169) UPF0093 PF03653.13 gi|14601055|ref|NP_147581.1| - 0.002 18.3 3.4 0.0047 17.2 3.4 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0093) DUF4149 PF13664.6 gi|14601055|ref|NP_147581.1| - 0.013 15.8 1.2 0.013 15.8 1.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) Urate_ox_N PF06181.11 gi|14601055|ref|NP_147581.1| - 0.035 13.4 0.2 0.035 13.4 0.2 1.9 2 1 0 2 2 2 0 Urate oxidase N-terminal DUF3487 PF11990.8 gi|14601055|ref|NP_147581.1| - 3.3 7.6 9.0 0.25 11.2 1.4 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3487) AAA_5 PF07728.14 gi|118431251|ref|NP_147582.2| - 1.4e-07 31.6 0.0 5.7e-07 29.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|118431251|ref|NP_147582.2| - 5e-06 27.0 0.0 2.3e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|118431251|ref|NP_147582.2| - 0.00012 22.5 0.0 0.00024 21.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.13 gi|118431251|ref|NP_147582.2| - 0.00015 21.0 0.0 0.00033 19.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|118431251|ref|NP_147582.2| - 0.00035 20.8 0.0 0.0013 19.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|118431251|ref|NP_147582.2| - 0.00081 19.1 0.0 0.52 10.0 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_33 PF13671.6 gi|118431251|ref|NP_147582.2| - 0.0016 18.6 0.0 0.0034 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|118431251|ref|NP_147582.2| - 0.003 17.3 0.0 0.092 12.5 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|118431251|ref|NP_147582.2| - 0.0041 17.2 0.0 0.041 13.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|118431251|ref|NP_147582.2| - 0.0071 16.1 0.0 0.022 14.5 0.0 1.8 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|118431251|ref|NP_147582.2| - 0.0074 15.7 0.0 0.034 13.5 0.0 2.2 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|118431251|ref|NP_147582.2| - 0.016 14.7 0.0 0.049 13.2 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|118431251|ref|NP_147582.2| - 0.019 14.5 0.0 0.095 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|118431251|ref|NP_147582.2| - 0.02 15.2 0.0 0.93 9.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|118431251|ref|NP_147582.2| - 0.024 15.2 0.0 0.043 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|118431251|ref|NP_147582.2| - 0.036 14.3 0.0 0.061 13.6 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase TniB PF05621.11 gi|118431251|ref|NP_147582.2| - 0.044 13.2 0.0 0.083 12.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial TniB protein AAA_24 PF13479.6 gi|118431251|ref|NP_147582.2| - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|118431251|ref|NP_147582.2| - 0.06 13.1 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|118431251|ref|NP_147582.2| - 0.07 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|118431251|ref|NP_147582.2| - 0.084 13.4 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|118431251|ref|NP_147582.2| - 0.085 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 NTPase RsgA_GTPase PF03193.16 gi|118431251|ref|NP_147582.2| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|118431251|ref|NP_147582.2| - 0.14 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|118431251|ref|NP_147582.2| - 0.21 11.3 0.0 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein VWA_CoxE PF05762.14 gi|118431252|ref|NP_147584.2| - 0.067 12.6 0.2 0.17 11.3 0.2 1.7 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein DUF4728 PF15860.5 gi|118431253|ref|NP_147585.2| - 0.12 13.1 0.0 0.22 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4728) Acetyltransf_CG PF14542.6 gi|118431255|ref|NP_147587.2| - 1.2e-20 73.4 0.0 1.7e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|118431255|ref|NP_147587.2| - 5.5e-08 33.0 0.1 8.5e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|118431255|ref|NP_147587.2| - 1.9e-05 24.8 0.1 4.2e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|118431255|ref|NP_147587.2| - 0.00029 21.2 0.0 0.00034 21.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|118431255|ref|NP_147587.2| - 0.0049 16.8 0.0 0.0077 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AP_endonuc_2 PF01261.24 gi|118431255|ref|NP_147587.2| - 0.049 13.1 0.0 0.051 13.0 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel FR47 PF08445.10 gi|118431255|ref|NP_147587.2| - 0.055 13.4 0.0 0.084 12.9 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_15 PF17013.5 gi|118431255|ref|NP_147587.2| - 0.071 12.6 0.1 0.073 12.5 0.1 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase Stc1 PF12898.7 gi|14601062|ref|NP_147588.1| - 0.083 13.4 0.1 0.13 12.8 0.1 1.2 1 0 0 1 1 1 0 Stc1 domain tRNA_SAD PF07973.14 gi|118431256|ref|NP_147589.2| - 2.3e-11 43.6 0.5 3.9e-11 42.8 0.5 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|118431256|ref|NP_147589.2| - 2.6e-10 39.5 0.0 3.3e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Cpn60_TCP1 PF00118.24 gi|118431257|ref|NP_147591.2| - 1.6e-180 601.0 14.9 1.8e-180 600.8 14.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family RuvB_C PF05491.13 gi|118431257|ref|NP_147591.2| - 0.0038 17.1 0.9 0.045 13.6 0.0 3.0 3 0 0 3 3 3 1 RuvB C-terminal winged helix domain DnaG_DnaB_bind PF08278.11 gi|118431257|ref|NP_147591.2| - 0.097 13.3 1.2 2.5 8.7 0.1 3.3 2 1 0 2 2 2 0 DNA primase DnaG DnaB-binding adh_short_C2 PF13561.6 gi|14601066|ref|NP_147592.1| - 1.8e-47 161.9 0.0 2.5e-47 161.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|14601066|ref|NP_147592.1| - 3.6e-33 114.7 0.0 4.6e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|14601066|ref|NP_147592.1| - 2.4e-08 34.1 0.1 5.3e-07 29.7 0.0 2.2 1 1 1 2 2 2 1 KR domain NAD_binding_10 PF13460.6 gi|14601066|ref|NP_147592.1| - 0.00038 20.4 0.0 0.00061 19.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RNA_pol_Rpb6 PF01192.22 gi|14601067|ref|NP_147593.1| - 2.3e-11 43.4 0.0 3.4e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.22 gi|118431258|ref|NP_147594.2| - 7.7e-11 41.7 14.1 4.4e-07 29.4 1.0 2.5 1 1 1 2 2 2 2 Peptidase family M50 OCD_Mu_crystall PF02423.15 gi|118431259|ref|NP_147595.2| - 2.3e-31 108.9 0.0 4.7e-31 107.9 0.0 1.4 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|118431259|ref|NP_147595.2| - 1.5e-06 28.3 0.0 2.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|118431259|ref|NP_147595.2| - 0.026 14.8 0.1 0.046 14.0 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|118431259|ref|NP_147595.2| - 0.042 14.4 0.0 0.083 13.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Peripla_BP_6 PF13458.6 gi|14601070|ref|NP_147596.1| - 6e-40 137.9 3.9 8.4e-40 137.5 3.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|14601070|ref|NP_147596.1| - 7.1e-33 114.2 0.0 1.1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 gi|14601070|ref|NP_147596.1| - 6.2e-10 38.5 0.5 8.7e-10 38.0 0.5 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|14601070|ref|NP_147596.1| - 0.00085 18.4 0.1 0.0012 18.0 0.1 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain DUF4366 PF14283.6 gi|14601070|ref|NP_147596.1| - 0.0037 17.3 0.1 0.0071 16.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) PrpR_N PF06506.11 gi|14601070|ref|NP_147596.1| - 0.047 13.3 0.7 0.11 12.1 0.1 1.9 3 0 0 3 3 3 0 Propionate catabolism activator MRP-L20 PF12824.7 gi|14601070|ref|NP_147596.1| - 0.052 13.7 0.0 0.83 9.8 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal protein subunit L20 DUF166 PF02593.14 gi|14601070|ref|NP_147596.1| - 0.063 12.8 0.1 0.6 9.6 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function Podoplanin PF05808.11 gi|14601070|ref|NP_147596.1| - 0.14 12.3 1.2 0.43 10.7 1.2 1.8 1 0 0 1 1 1 0 Podoplanin EssA PF10661.9 gi|14601070|ref|NP_147596.1| - 0.26 11.1 1.1 0.71 9.7 1.1 1.8 1 1 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA ABC_tran PF00005.27 gi|14601071|ref|NP_147597.1| - 2e-30 106.1 0.0 2.6e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14601071|ref|NP_147597.1| - 1.3e-10 41.6 0.1 8.3e-05 22.5 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|14601071|ref|NP_147597.1| - 4.7e-09 36.0 0.0 9.2e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|14601071|ref|NP_147597.1| - 9.6e-07 28.5 0.0 0.013 15.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|14601071|ref|NP_147597.1| - 1.4e-05 24.7 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|14601071|ref|NP_147597.1| - 2.5e-05 24.2 0.0 6.4e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|14601071|ref|NP_147597.1| - 3.9e-05 24.2 0.3 5.6e-05 23.7 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|14601071|ref|NP_147597.1| - 0.00021 20.9 0.0 0.041 13.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|14601071|ref|NP_147597.1| - 0.00065 20.0 0.0 0.0018 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|14601071|ref|NP_147597.1| - 0.0013 19.1 0.1 0.0015 19.0 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|14601071|ref|NP_147597.1| - 0.0014 18.4 0.0 0.0041 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|14601071|ref|NP_147597.1| - 0.0021 18.0 0.1 0.0066 16.4 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase SRP54 PF00448.22 gi|14601071|ref|NP_147597.1| - 0.0074 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ABC_ATPase PF09818.9 gi|14601071|ref|NP_147597.1| - 0.015 14.2 0.7 0.43 9.3 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|14601071|ref|NP_147597.1| - 0.032 13.3 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|14601071|ref|NP_147597.1| - 0.052 14.0 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|14601071|ref|NP_147597.1| - 0.054 12.8 0.8 0.45 9.8 0.2 2.0 2 0 0 2 2 2 0 KaiC Rad17 PF03215.15 gi|14601071|ref|NP_147597.1| - 0.056 13.4 0.0 0.093 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|14601071|ref|NP_147597.1| - 0.056 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|14601071|ref|NP_147597.1| - 0.066 13.4 0.1 0.17 12.0 0.1 1.6 2 0 0 2 2 1 0 AAA domain cobW PF02492.19 gi|14601071|ref|NP_147597.1| - 0.073 12.6 0.2 0.14 11.8 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|14601071|ref|NP_147597.1| - 0.087 12.7 0.1 0.26 11.2 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DLIC PF05783.11 gi|14601071|ref|NP_147597.1| - 0.1 11.4 0.1 0.14 11.0 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_7 PF12775.7 gi|14601071|ref|NP_147597.1| - 0.11 12.0 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_27 PF13514.6 gi|14601071|ref|NP_147597.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|14601071|ref|NP_147597.1| - 0.13 10.9 0.1 0.17 10.5 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|14601071|ref|NP_147597.1| - 0.13 12.0 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|14601071|ref|NP_147597.1| - 0.13 12.1 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|14601071|ref|NP_147597.1| - 0.15 12.4 0.1 0.37 11.1 0.1 1.6 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|14601071|ref|NP_147597.1| - 0.15 9.5 0.1 0.2 9.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PduV-EutP PF10662.9 gi|14601071|ref|NP_147597.1| - 0.15 11.8 0.1 0.33 10.7 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|14601071|ref|NP_147597.1| - 0.23 11.2 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|14601071|ref|NP_147597.1| - 0.24 10.6 0.0 0.35 10.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|14601071|ref|NP_147597.1| - 0.3 10.2 0.0 0.39 9.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ABC_tran PF00005.27 gi|14601072|ref|NP_147598.1| - 1.3e-30 106.7 0.0 1.7e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14601072|ref|NP_147598.1| - 7.8e-15 55.5 0.1 3e-06 27.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|14601072|ref|NP_147598.1| - 1.5e-07 31.1 0.0 1.3e-06 28.0 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|14601072|ref|NP_147598.1| - 1.5e-05 24.9 0.0 0.00039 20.3 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|14601072|ref|NP_147598.1| - 1.5e-05 25.3 0.0 6.8e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|14601072|ref|NP_147598.1| - 6.5e-05 23.5 0.1 8.9e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|14601072|ref|NP_147598.1| - 0.00012 21.7 0.1 0.00029 20.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|14601072|ref|NP_147598.1| - 0.00099 19.5 0.0 0.0013 19.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|14601072|ref|NP_147598.1| - 0.0012 17.7 0.1 0.0028 16.5 0.2 1.5 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|14601072|ref|NP_147598.1| - 0.0018 17.9 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 gi|14601072|ref|NP_147598.1| - 0.0033 16.4 0.1 0.0068 15.4 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain MeaB PF03308.16 gi|14601072|ref|NP_147598.1| - 0.0062 15.6 0.6 0.14 11.2 0.0 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|14601072|ref|NP_147598.1| - 0.0066 16.2 0.2 0.017 14.8 0.1 1.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|14601072|ref|NP_147598.1| - 0.0092 15.9 0.2 0.018 14.9 0.1 1.5 2 0 0 2 2 1 1 RsgA GTPase AAA_30 PF13604.6 gi|14601072|ref|NP_147598.1| - 0.01 15.6 0.0 0.095 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|14601072|ref|NP_147598.1| - 0.017 14.5 0.2 4 6.7 0.1 2.2 2 0 0 2 2 2 0 KaiC MMR_HSR1 PF01926.23 gi|14601072|ref|NP_147598.1| - 0.025 14.6 0.0 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 gi|14601072|ref|NP_147598.1| - 0.028 14.0 0.2 0.042 13.4 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|14601072|ref|NP_147598.1| - 0.028 14.6 0.0 0.046 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|14601072|ref|NP_147598.1| - 0.029 14.6 0.0 0.55 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|14601072|ref|NP_147598.1| - 0.035 14.1 0.0 0.083 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|14601072|ref|NP_147598.1| - 0.049 13.2 0.2 0.11 12.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|14601072|ref|NP_147598.1| - 0.051 12.4 0.0 0.091 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein ATPase_2 PF01637.18 gi|14601072|ref|NP_147598.1| - 0.057 13.3 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|14601072|ref|NP_147598.1| - 0.075 13.5 0.1 0.35 11.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain Septin PF00735.18 gi|14601072|ref|NP_147598.1| - 0.12 11.7 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Septin BPD_transp_2 PF02653.16 gi|14601073|ref|NP_147599.1| - 6.7e-33 114.0 36.0 8.4e-33 113.7 36.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component TraQ PF09679.10 gi|14601073|ref|NP_147599.1| - 0.27 11.2 1.8 1.1 9.3 0.1 2.6 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) BPD_transp_2 PF02653.16 gi|118431260|ref|NP_147600.2| - 3.2e-33 115.0 26.2 4.4e-33 114.6 26.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Thiolase_N PF00108.23 gi|118431262|ref|NP_147604.2| - 1.4e-25 90.1 0.9 1.3e-24 86.9 0.9 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|118431262|ref|NP_147604.2| - 5.8e-09 35.9 3.8 4.7e-08 32.9 3.6 2.1 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|118431262|ref|NP_147604.2| - 8.8e-09 35.1 0.1 1.5e-07 31.1 0.1 2.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|118431262|ref|NP_147604.2| - 8.5e-06 25.5 0.6 0.00034 20.4 0.4 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PTS_IIB PF02302.17 gi|118431262|ref|NP_147604.2| - 0.17 12.6 1.2 53 4.6 0.0 3.3 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit OB_aCoA_assoc PF01796.17 gi|118431263|ref|NP_147605.2| - 3.7e-13 49.2 0.5 6e-13 48.6 0.5 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|118431263|ref|NP_147605.2| - 2.6e-08 33.6 0.0 4.9e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TP_methylase PF00590.20 gi|14601080|ref|NP_147606.1| - 1.7e-17 64.1 2.3 2.6e-17 63.5 2.3 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Prot_ATP_OB_N PF17758.1 gi|14601080|ref|NP_147606.1| - 0.016 14.8 0.8 0.016 14.8 0.8 2.3 2 1 0 2 2 2 0 Proteasomal ATPase OB N-terminal domain Radical_SAM PF04055.21 gi|118431264|ref|NP_147607.2| - 1.9e-09 38.1 0.0 1.3e-08 35.4 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|118431264|ref|NP_147607.2| - 0.0013 18.6 0.1 1 9.0 3.8 2.2 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Pyr_redox_2 PF07992.14 gi|14601084|ref|NP_147610.1| - 3.7e-23 82.2 0.0 1.4e-22 80.3 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|14601084|ref|NP_147610.1| - 2.2e-07 31.0 1.2 5.1e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|14601084|ref|NP_147610.1| - 3.2e-05 24.4 0.2 0.0062 17.1 0.1 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|14601084|ref|NP_147610.1| - 0.00022 20.0 0.2 0.00055 18.8 0.3 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|14601084|ref|NP_147610.1| - 0.00038 19.8 0.5 0.21 10.8 0.2 3.5 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|14601084|ref|NP_147610.1| - 0.00053 19.3 0.1 0.00096 18.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|14601084|ref|NP_147610.1| - 0.0021 17.2 0.1 0.015 14.4 0.1 2.4 2 1 1 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|14601084|ref|NP_147610.1| - 0.0042 16.4 0.2 0.16 11.2 0.0 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|14601084|ref|NP_147610.1| - 0.0054 16.4 3.5 0.13 11.8 0.1 2.5 2 1 0 3 3 3 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|14601084|ref|NP_147610.1| - 0.028 14.0 0.1 0.15 11.7 0.1 2.0 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.7 gi|14601084|ref|NP_147610.1| - 0.042 13.2 0.1 0.064 12.6 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|14601084|ref|NP_147610.1| - 0.043 13.2 0.1 0.13 11.6 0.1 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF998 PF06197.13 gi|14601084|ref|NP_147610.1| - 0.066 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF998) Thi4 PF01946.17 gi|14601084|ref|NP_147610.1| - 0.12 11.6 0.1 0.23 10.7 0.1 1.4 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.18 gi|14601084|ref|NP_147610.1| - 0.12 12.3 0.4 0.19 11.6 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|14601084|ref|NP_147610.1| - 0.2 10.7 1.6 1.3 8.0 0.6 2.2 1 1 0 2 2 2 0 Glucose inhibited division protein A APH PF01636.23 gi|118431265|ref|NP_147611.2| - 2.7e-08 34.0 0.1 0.00016 21.7 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|118431265|ref|NP_147611.2| - 0.0026 17.4 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.14 gi|118431265|ref|NP_147611.2| - 0.0084 15.5 0.0 0.056 12.8 0.0 1.9 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family MJ1316 PF04457.12 gi|14601086|ref|NP_147612.1| - 1.7e-07 31.8 0.6 2.2e-07 31.5 0.6 1.2 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain BPD_transp_1 PF00528.22 gi|14601088|ref|NP_147614.1| - 3.7e-12 46.4 15.8 3.7e-12 46.4 15.8 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|14601089|ref|NP_147615.1| - 1.8e-13 50.7 16.6 1.8e-13 50.7 16.6 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|118431266|ref|NP_147616.2| - 3.9e-34 118.1 0.0 5.5e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|118431266|ref|NP_147616.2| - 4e-12 46.1 0.6 1.2e-11 44.6 0.6 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|118431266|ref|NP_147616.2| - 3.3e-10 40.3 0.0 5.9e-06 26.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431266|ref|NP_147616.2| - 2.2e-06 27.3 0.0 0.005 16.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|118431266|ref|NP_147616.2| - 0.00098 19.5 0.3 0.0025 18.2 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|118431266|ref|NP_147616.2| - 0.00098 18.8 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|118431266|ref|NP_147616.2| - 0.0023 18.3 0.2 0.018 15.5 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|118431266|ref|NP_147616.2| - 0.0026 17.3 0.0 0.15 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|118431266|ref|NP_147616.2| - 0.0033 17.9 0.0 0.0051 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|118431266|ref|NP_147616.2| - 0.0054 17.0 0.3 0.037 14.3 0.3 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|118431266|ref|NP_147616.2| - 0.0064 16.4 0.0 0.0096 15.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|118431266|ref|NP_147616.2| - 0.014 15.3 0.0 0.031 14.2 0.0 1.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|118431266|ref|NP_147616.2| - 0.018 14.8 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|118431266|ref|NP_147616.2| - 0.024 14.6 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TOBE PF03459.17 gi|118431266|ref|NP_147616.2| - 0.03 14.6 0.1 0.073 13.4 0.1 1.6 1 0 0 1 1 1 0 TOBE domain NACHT PF05729.12 gi|118431266|ref|NP_147616.2| - 0.04 13.8 0.5 0.083 12.8 0.1 1.7 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|118431266|ref|NP_147616.2| - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_19 PF13245.6 gi|118431266|ref|NP_147616.2| - 0.18 12.1 0.0 0.54 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|118431266|ref|NP_147616.2| - 0.18 11.8 0.6 0.49 10.4 0.2 1.9 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|118431266|ref|NP_147616.2| - 0.23 11.7 0.4 3.4 8.0 0.1 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 gi|118431266|ref|NP_147616.2| - 0.24 10.7 0.1 0.56 9.5 0.0 1.5 2 0 0 2 2 2 0 KaiC SBP_bac_8 PF13416.6 gi|118431267|ref|NP_147617.2| - 3.7e-33 115.6 0.0 4.6e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|118431267|ref|NP_147617.2| - 9.8e-24 84.9 0.0 1.3e-23 84.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|118431267|ref|NP_147617.2| - 1.5e-22 80.2 0.0 2.2e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|118431267|ref|NP_147617.2| - 5.2e-07 29.7 0.0 2.8e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SP_C-Propep PF08999.10 gi|118431267|ref|NP_147617.2| - 0.31 10.8 2.3 4.7 7.1 0.2 2.3 2 0 0 2 2 2 0 Surfactant protein C, N terminal propeptide Fer2_3 PF13085.6 gi|14601092|ref|NP_147618.1| - 2.4e-34 117.6 0.0 4.8e-34 116.6 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|14601092|ref|NP_147618.1| - 8.2e-09 35.8 1.7 1.5e-08 34.9 0.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|14601092|ref|NP_147618.1| - 3.7e-08 33.8 5.4 4.4e-06 27.1 0.4 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|14601092|ref|NP_147618.1| - 4.6e-07 29.9 0.6 4.6e-07 29.9 0.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|14601092|ref|NP_147618.1| - 1.3e-06 28.9 3.6 3.2e-06 27.6 0.5 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|14601092|ref|NP_147618.1| - 1.4e-05 24.7 1.4 1.4e-05 24.7 1.4 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.27 gi|14601092|ref|NP_147618.1| - 4.5e-05 23.3 0.4 4.5e-05 23.3 0.4 2.3 2 1 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.7 gi|14601092|ref|NP_147618.1| - 0.0001 22.2 0.8 0.0001 22.2 0.8 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer2_4 PF13510.6 gi|14601092|ref|NP_147618.1| - 0.00064 19.7 0.2 0.0012 18.9 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.6 gi|14601092|ref|NP_147618.1| - 0.0014 19.6 11.2 0.022 15.7 0.5 2.9 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|14601092|ref|NP_147618.1| - 0.0026 18.0 1.3 0.21 11.8 0.0 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|14601092|ref|NP_147618.1| - 0.0027 17.7 1.1 0.0027 17.7 1.1 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|14601092|ref|NP_147618.1| - 0.0028 18.0 0.5 0.0028 18.0 0.5 3.0 3 0 0 3 3 2 1 4Fe-4S binding domain BRX PF08381.11 gi|14601092|ref|NP_147618.1| - 0.011 15.1 0.1 0.02 14.2 0.1 1.4 1 0 0 1 1 1 0 Transcription factor regulating root and shoot growth via Pin3 Fer4_21 PF14697.6 gi|14601092|ref|NP_147618.1| - 0.013 15.7 0.3 0.013 15.7 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|14601092|ref|NP_147618.1| - 0.013 15.7 1.4 0.013 15.7 1.4 3.0 2 2 3 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|14601092|ref|NP_147618.1| - 0.071 13.7 1.2 0.071 13.7 1.2 2.7 4 0 0 4 4 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|14601092|ref|NP_147618.1| - 0.34 11.7 0.3 0.34 11.7 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|14601092|ref|NP_147618.1| - 7 7.6 8.2 6.5 7.7 4.2 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Sdh_cyt PF01127.22 gi|14601093|ref|NP_147619.1| - 2.6e-07 30.7 10.0 3.1e-07 30.4 10.0 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DPM3 PF08285.11 gi|14601093|ref|NP_147619.1| - 1.9 8.7 8.8 32 4.8 8.8 2.1 1 1 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Sdh_cyt PF01127.22 gi|118431268|ref|NP_147620.2| - 4.4e-12 46.1 3.6 6.7e-12 45.5 3.4 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.19 gi|118431268|ref|NP_147620.2| - 0.063 13.4 7.0 0.16 12.1 4.5 2.1 1 1 0 1 1 1 0 Ferric reductase like transmembrane component FAD_binding_2 PF00890.24 gi|118431269|ref|NP_147621.2| - 5.3e-108 361.8 0.1 6.5e-108 361.5 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|118431269|ref|NP_147621.2| - 1e-40 138.6 0.4 1.7e-40 138.0 0.4 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|118431269|ref|NP_147621.2| - 7.7e-05 22.1 0.5 0.005 16.1 0.1 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|118431269|ref|NP_147621.2| - 0.00079 18.7 0.2 0.028 13.6 0.1 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|118431269|ref|NP_147621.2| - 0.019 13.7 0.0 2 7.0 0.0 2.4 2 0 0 2 2 2 0 HI0933-like protein DAO PF01266.24 gi|118431269|ref|NP_147621.2| - 0.022 14.4 5.6 0.024 14.2 0.8 3.0 3 2 1 4 4 4 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|118431269|ref|NP_147621.2| - 0.097 12.9 0.7 0.74 10.1 0.2 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|118431269|ref|NP_147621.2| - 0.11 11.5 0.1 0.35 9.9 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A GCV_H PF01597.19 gi|118431270|ref|NP_147622.2| - 1.9e-47 160.2 0.2 2.3e-47 159.9 0.2 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|118431270|ref|NP_147622.2| - 8.7e-06 25.5 0.8 1.8e-05 24.5 0.5 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|118431270|ref|NP_147622.2| - 6.3e-05 22.9 0.0 9.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain OMPdecase PF00215.24 gi|118431271|ref|NP_147623.2| - 2.4e-22 79.6 2.8 2.8e-22 79.4 2.8 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.21 gi|118431271|ref|NP_147623.2| - 5e-05 22.9 0.3 8.9e-05 22.1 0.2 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|118431271|ref|NP_147623.2| - 0.00055 19.4 0.2 0.0055 16.1 0.2 2.1 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family PEP_hydrolase PF09370.10 gi|118431271|ref|NP_147623.2| - 0.0024 17.2 0.1 0.17 11.1 0.0 2.4 1 1 1 2 2 2 2 Phosphoenolpyruvate hydrolase-like Creatininase PF02633.14 gi|14601098|ref|NP_147624.1| - 1.2e-38 132.9 0.0 1.7e-38 132.5 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase Ion_trans PF00520.31 gi|14601099|ref|NP_147625.1| - 6.3e-18 64.9 5.1 8.7e-18 64.4 5.1 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|14601099|ref|NP_147625.1| - 1e-17 63.8 5.3 2.8e-17 62.4 5.3 1.7 1 0 0 1 1 1 1 Ion channel PRA-PH PF01503.17 gi|14601099|ref|NP_147625.1| - 0.1 13.0 0.2 0.4 11.2 0.1 1.9 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase DUF3008 PF11450.8 gi|14601099|ref|NP_147625.1| - 0.12 12.5 0.2 0.24 11.6 0.2 1.3 1 0 0 1 1 1 0 Protein of unknwon function (DUF3008) BRI3BP PF14965.6 gi|14601099|ref|NP_147625.1| - 5.2 6.6 11.3 0.044 13.3 1.5 2.3 2 1 1 3 3 3 0 Negative regulator of p53/TP53 NucS PF01939.16 gi|14601101|ref|NP_147627.1| - 9.3e-44 149.5 0.0 1.2e-43 149.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS LSM PF01423.22 gi|118431273|ref|YP_874866.1| - 2e-18 65.9 0.2 2.3e-18 65.6 0.2 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|118431273|ref|YP_874866.1| - 0.021 15.0 0.1 0.026 14.6 0.1 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF1615 PF07759.12 gi|118431273|ref|YP_874866.1| - 0.092 11.9 0.0 0.1 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DUF150_C PF17384.2 gi|118431273|ref|YP_874866.1| - 0.1 12.8 0.0 0.22 11.7 0.0 1.7 1 1 1 2 2 2 0 RimP C-terminal SH3 domain DNA_binding_1 PF01035.20 gi|14601102|ref|NP_147629.1| - 6.3e-26 90.3 0.0 9.5e-26 89.8 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_38 PF13936.6 gi|14601102|ref|NP_147629.1| - 0.077 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 gi|14601103|ref|NP_147630.1| - 2e-39 135.0 0.0 1.1e-38 132.7 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|14601103|ref|NP_147630.1| - 9.8e-14 50.9 0.0 3e-13 49.4 0.0 1.9 1 0 0 1 1 1 1 AAA+ lid domain Vps4_C PF09336.10 gi|14601103|ref|NP_147630.1| - 7.1e-09 35.5 0.0 1e-07 31.8 0.0 2.3 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_22 PF13401.6 gi|14601103|ref|NP_147630.1| - 6.6e-07 29.7 0.0 0.00024 21.4 0.0 3.2 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|14601103|ref|NP_147630.1| - 7.5e-07 29.7 0.0 0.00039 20.9 0.0 2.7 1 1 2 3 3 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|14601103|ref|NP_147630.1| - 7.6e-07 29.2 0.0 1.2e-05 25.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|14601103|ref|NP_147630.1| - 1.1e-06 28.6 0.0 5.2e-05 23.3 0.0 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|14601103|ref|NP_147630.1| - 2.1e-06 28.0 0.0 3.9e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|14601103|ref|NP_147630.1| - 2.5e-05 24.1 0.1 0.00021 21.1 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|14601103|ref|NP_147630.1| - 8.4e-05 22.2 0.6 0.018 14.6 0.1 2.8 1 1 2 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|14601103|ref|NP_147630.1| - 0.00013 21.8 0.1 0.00088 19.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain MIT PF04212.18 gi|14601103|ref|NP_147630.1| - 0.00013 22.0 2.6 0.00013 22.0 2.6 2.0 2 0 0 2 2 1 1 MIT (microtubule interacting and transport) domain TIP49 PF06068.13 gi|14601103|ref|NP_147630.1| - 0.00015 21.1 0.0 0.00067 19.0 0.0 2.0 1 1 1 2 2 2 1 TIP49 P-loop domain ATPase_2 PF01637.18 gi|14601103|ref|NP_147630.1| - 0.00095 19.1 0.1 1.7 8.5 0.0 2.6 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|14601103|ref|NP_147630.1| - 0.0011 19.3 0.0 0.008 16.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.21 gi|14601103|ref|NP_147630.1| - 0.0019 17.6 0.1 0.0049 16.3 0.0 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|14601103|ref|NP_147630.1| - 0.0022 18.5 0.1 0.018 15.6 0.1 2.6 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|14601103|ref|NP_147630.1| - 0.0022 17.4 0.1 1.5 8.1 0.1 2.6 2 1 1 3 3 2 1 KaiC IstB_IS21 PF01695.17 gi|14601103|ref|NP_147630.1| - 0.0056 16.4 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|14601103|ref|NP_147630.1| - 0.0063 16.7 0.0 0.019 15.2 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|14601103|ref|NP_147630.1| - 0.0089 15.6 0.0 0.044 13.3 0.0 2.1 1 1 0 1 1 1 1 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|14601103|ref|NP_147630.1| - 0.018 14.3 0.0 0.24 10.7 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin Parvo_NS1 PF01057.17 gi|14601103|ref|NP_147630.1| - 0.023 13.8 0.0 0.045 12.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_28 PF13521.6 gi|14601103|ref|NP_147630.1| - 0.024 14.9 0.1 0.13 12.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|14601103|ref|NP_147630.1| - 0.027 14.2 0.0 0.11 12.2 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain TPR_11 PF13414.6 gi|14601103|ref|NP_147630.1| - 0.028 14.1 0.3 0.028 14.1 0.3 1.9 3 0 0 3 3 1 0 TPR repeat Bac_DnaA PF00308.18 gi|14601103|ref|NP_147630.1| - 0.039 13.8 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein NACHT PF05729.12 gi|14601103|ref|NP_147630.1| - 0.048 13.6 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|14601103|ref|NP_147630.1| - 0.056 12.6 0.0 0.52 9.5 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain DUF2075 PF09848.9 gi|14601103|ref|NP_147630.1| - 0.057 12.7 0.0 0.096 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.11 gi|14601103|ref|NP_147630.1| - 0.082 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|14601103|ref|NP_147630.1| - 0.099 11.8 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF5113 PF17140.4 gi|14601103|ref|NP_147630.1| - 0.1 12.4 1.2 0.15 11.9 0.4 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF5113) PTS_IIA PF02255.16 gi|14601103|ref|NP_147630.1| - 0.13 12.3 0.1 0.41 10.7 0.1 1.8 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIA subunit TPR_6 PF13174.6 gi|14601103|ref|NP_147630.1| - 0.17 12.6 1.3 0.97 10.2 0.1 2.9 2 1 0 2 2 2 0 Tetratricopeptide repeat AAA_11 PF13086.6 gi|14601103|ref|NP_147630.1| - 0.17 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TPR_2 PF07719.17 gi|14601103|ref|NP_147630.1| - 0.39 10.9 3.8 0.74 10.1 0.4 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|14601103|ref|NP_147630.1| - 0.82 10.0 4.3 2.4 8.6 0.2 3.1 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|14601103|ref|NP_147630.1| - 1.8 8.5 5.3 0.41 10.6 1.3 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat MarR_2 PF12802.7 gi|118431274|ref|YP_874867.1| - 7.5e-06 25.7 0.5 0.0002 21.2 0.1 3.0 3 0 0 3 3 3 1 MarR family GntR PF00392.21 gi|118431274|ref|YP_874867.1| - 0.00014 21.4 0.2 0.00036 20.1 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|118431274|ref|YP_874867.1| - 0.00023 21.0 0.3 0.00067 19.5 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|118431274|ref|YP_874867.1| - 0.00096 19.5 1.3 0.0035 17.7 0.2 2.5 3 0 0 3 3 3 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|118431274|ref|YP_874867.1| - 0.0011 19.1 0.1 0.0025 18.0 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|118431274|ref|YP_874867.1| - 0.0031 18.0 0.4 0.0092 16.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain RPA_C PF08784.11 gi|118431274|ref|YP_874867.1| - 0.0072 17.0 0.0 0.52 11.0 0.0 2.4 2 0 0 2 2 2 1 Replication protein A C terminal HTH_36 PF13730.6 gi|118431274|ref|YP_874867.1| - 0.0088 16.0 0.1 0.021 14.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain IF2_N PF04760.15 gi|118431274|ref|YP_874867.1| - 0.01 15.6 0.1 0.043 13.6 0.1 2.2 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region AbiEi_4 PF13338.6 gi|118431274|ref|YP_874867.1| - 0.011 15.9 0.1 0.032 14.4 0.1 1.8 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin UBA_3 PF09288.10 gi|118431274|ref|YP_874867.1| - 0.011 15.5 1.2 0.26 11.1 0.1 2.9 3 0 0 3 3 3 0 Fungal ubiquitin-associated domain LexA_DNA_bind PF01726.16 gi|118431274|ref|YP_874867.1| - 0.012 15.3 0.2 0.047 13.5 0.1 2.1 2 0 0 2 2 2 0 LexA DNA binding domain DDRGK PF09756.9 gi|118431274|ref|YP_874867.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_Crp_2 PF13545.6 gi|118431274|ref|YP_874867.1| - 0.021 14.8 1.8 0.044 13.8 0.2 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|118431274|ref|YP_874867.1| - 0.038 13.9 0.1 0.1 12.5 0.1 1.7 1 0 0 1 1 1 0 MarR family z-alpha PF02295.17 gi|118431274|ref|YP_874867.1| - 0.044 13.8 0.1 0.48 10.5 0.1 2.5 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain HTH_24 PF13412.6 gi|118431274|ref|YP_874867.1| - 0.044 13.4 0.4 0.044 13.4 0.4 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RuvB_C PF05491.13 gi|118431274|ref|YP_874867.1| - 0.061 13.2 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_CodY PF08222.11 gi|118431274|ref|YP_874867.1| - 0.066 12.8 0.8 0.16 11.5 0.8 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_10 PF04967.12 gi|118431274|ref|YP_874867.1| - 0.075 12.9 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain PaaX PF07848.12 gi|118431274|ref|YP_874867.1| - 0.098 12.9 0.2 0.098 12.9 0.2 2.4 3 0 0 3 3 2 0 PaaX-like protein Cons_hypoth95 PF03602.15 gi|118431275|ref|NP_147631.2| - 1.9e-06 27.6 0.0 2.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|118431275|ref|NP_147631.2| - 4.9e-06 26.2 0.0 6.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|118431275|ref|NP_147631.2| - 0.0002 22.0 0.0 0.00068 20.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|118431275|ref|NP_147631.2| - 0.00023 21.8 0.0 0.0019 18.8 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|118431275|ref|NP_147631.2| - 0.00065 19.6 0.0 0.0015 18.4 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|118431275|ref|NP_147631.2| - 0.00087 18.8 0.1 0.0012 18.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|118431275|ref|NP_147631.2| - 0.028 14.3 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|118431275|ref|NP_147631.2| - 0.041 13.2 0.0 1.6 8.0 0.0 2.3 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|118431275|ref|NP_147631.2| - 0.11 13.5 0.0 0.25 12.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|118431275|ref|NP_147631.2| - 0.17 11.6 0.0 0.35 10.6 0.0 1.5 2 0 0 2 2 2 0 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 gi|118431275|ref|NP_147631.2| - 0.17 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|118431275|ref|NP_147631.2| - 0.21 11.4 0.0 0.39 10.5 0.0 1.4 2 0 0 2 2 2 0 Methyltransferase domain EamA PF00892.20 gi|118431276|ref|NP_147632.2| - 2.5e-22 79.5 30.1 1.2e-13 51.4 16.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 gi|118431276|ref|NP_147632.2| - 0.051 12.8 5.1 0.017 14.4 1.8 1.8 2 0 0 2 2 2 0 Purine nucleobase transmembrane transport TPT PF03151.16 gi|118431276|ref|NP_147632.2| - 3 7.1 8.8 0.79 9.0 2.0 2.4 2 1 0 2 2 2 0 Triose-phosphate Transporter family Metallophos PF00149.28 gi|118431277|ref|NP_147633.2| - 8.9e-15 55.7 1.9 1.4e-14 55.1 1.9 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|118431277|ref|NP_147633.2| - 5.2e-05 23.5 0.0 0.00019 21.7 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Mucin PF01456.17 gi|118431277|ref|NP_147633.2| - 0.002 18.1 30.4 0.0053 16.7 30.4 1.6 1 0 0 1 1 1 1 Mucin-like glycoprotein AJAP1_PANP_C PF15298.6 gi|118431277|ref|NP_147633.2| - 0.2 11.9 15.8 0.34 11.1 15.8 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus MGC-24 PF05283.11 gi|118431277|ref|NP_147633.2| - 2.2 8.7 8.4 4.2 7.8 8.4 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin ABC_transp_aux PF09822.9 gi|118431278|ref|NP_147635.2| - 0.028 13.9 0.0 0.24 10.9 0.0 2.2 1 1 1 2 2 2 0 ABC-type uncharacterized transport system RIFIN PF02009.16 gi|118431278|ref|NP_147635.2| - 0.15 11.9 6.5 0.24 11.3 6.5 1.3 1 0 0 1 1 1 0 Rifin DUF5305 PF17231.2 gi|118431278|ref|NP_147635.2| - 0.22 10.9 8.8 0.14 11.6 6.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5305) SSF PF00474.17 gi|118431279|ref|NP_147637.2| - 1.4e-22 80.1 30.4 2.4e-22 79.4 30.4 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1970 PF09301.10 gi|118431279|ref|NP_147637.2| - 0.19 12.0 4.8 0.35 11.1 0.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1970) DUF1152 PF06626.12 gi|118431280|ref|NP_147638.2| - 2.1e-106 355.4 1.9 2.4e-106 355.3 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) FliD_C PF07195.12 gi|118431281|ref|YP_874868.1| - 0.0029 17.0 0.3 0.0039 16.7 0.3 1.1 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus RHH_5 PF07878.11 gi|118431281|ref|YP_874868.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Lebercilin PF15619.6 gi|118431281|ref|YP_874868.1| - 0.013 15.2 0.9 0.02 14.6 0.9 1.3 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease GCP_N_terminal PF17681.1 gi|118431281|ref|YP_874868.1| - 0.044 13.4 0.1 0.049 13.2 0.1 1.0 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal RHH_1 PF01402.21 gi|118431282|ref|YP_874869.1| - 4.8e-10 39.0 2.8 5.6e-10 38.8 2.8 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|118431282|ref|YP_874869.1| - 2e-05 24.4 2.9 2.7e-05 24.0 2.9 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|118431282|ref|YP_874869.1| - 0.0011 19.7 0.0 0.0011 19.6 0.0 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor CopG_antitoxin PF12441.8 gi|118431282|ref|YP_874869.1| - 0.016 15.7 0.2 0.021 15.3 0.2 1.2 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system VapB_antitoxin PF09957.9 gi|118431282|ref|YP_874869.1| - 0.034 14.1 1.6 0.098 12.6 1.6 1.8 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB RNase_J_C PF17770.1 gi|118431282|ref|YP_874869.1| - 0.085 13.9 0.3 0.11 13.6 0.3 1.3 1 1 0 1 1 1 0 Ribonuclease J C-terminal domain YmgB PF10798.8 gi|118431282|ref|YP_874869.1| - 0.087 12.7 0.2 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 Biofilm development protein YmgB/AriR DUF3791 PF12668.7 gi|118431282|ref|YP_874869.1| - 0.092 12.8 0.1 0.15 12.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3791) RHH_5 PF07878.11 gi|118431282|ref|YP_874869.1| - 0.11 12.4 0.6 0.16 11.9 0.6 1.1 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HrcA_DNA-bdg PF03444.15 gi|118431283|ref|NP_147639.2| - 2.1e-35 120.2 1.3 3.3e-35 119.6 0.1 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|118431283|ref|NP_147639.2| - 5.7e-26 90.7 2.2 2.6e-13 50.2 0.1 2.6 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|118431283|ref|NP_147639.2| - 1.1e-07 32.1 0.1 2.3e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Pro-kuma_activ PF09286.11 gi|118431283|ref|NP_147639.2| - 0.00023 21.5 0.0 0.13 12.5 0.0 2.3 2 0 0 2 2 2 2 Pro-kumamolisin, activation domain HTH_11 PF08279.12 gi|118431283|ref|NP_147639.2| - 0.00037 20.4 0.2 0.0015 18.4 0.0 2.2 2 0 0 2 2 1 1 HTH domain TrmB PF01978.19 gi|118431283|ref|NP_147639.2| - 0.0012 18.6 0.5 0.026 14.4 0.1 2.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|118431283|ref|NP_147639.2| - 0.0033 17.6 2.8 0.0053 16.9 0.5 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TusA PF01206.17 gi|118431283|ref|NP_147639.2| - 0.023 14.5 0.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 0 Sulfurtransferase TusA GntR PF00392.21 gi|118431283|ref|NP_147639.2| - 0.025 14.2 0.6 0.12 12.0 0.2 2.3 2 1 1 3 3 3 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|118431283|ref|NP_147639.2| - 0.026 14.9 0.3 0.2 12.0 0.1 2.3 1 1 1 2 2 2 0 Penicillinase repressor MarR_2 PF12802.7 gi|118431283|ref|NP_147639.2| - 0.035 14.0 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 MarR family Put_DNA-bind_N PF06971.13 gi|118431283|ref|NP_147639.2| - 0.11 12.6 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Sigma70_r4_2 PF08281.12 gi|118431283|ref|NP_147639.2| - 0.11 12.1 0.3 0.78 9.5 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|118431283|ref|NP_147639.2| - 0.12 11.9 0.9 0.23 11.1 0.1 2.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|118431283|ref|NP_147639.2| - 0.12 12.5 0.0 0.53 10.4 0.0 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_27 PF13463.6 gi|118431283|ref|NP_147639.2| - 0.12 12.8 0.1 0.28 11.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2192 PF09958.9 gi|14601113|ref|NP_147640.1| - 2.4e-87 292.3 0.7 2.8e-87 292.0 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) GSAP-16 PF14959.6 gi|14601113|ref|NP_147640.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 gamma-Secretase-activating protein C-term ZapD PF07072.11 gi|14601113|ref|NP_147640.1| - 0.023 14.4 0.0 0.37 10.5 0.0 2.1 2 0 0 2 2 2 0 Cell division protein KOW PF00467.29 gi|118431284|ref|NP_147641.2| - 7.8e-05 22.5 0.8 0.00017 21.4 0.3 1.9 1 1 0 1 1 1 1 KOW motif XisI PF08869.11 gi|118431284|ref|NP_147641.2| - 0.0073 16.6 0.0 0.0093 16.3 0.0 1.1 1 0 0 1 1 1 1 XisI protein Ribosomal_L14e PF01929.17 gi|118431284|ref|NP_147641.2| - 0.015 15.8 0.0 0.02 15.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L14 Cytidylate_kin2 PF13189.6 gi|118431285|ref|NP_147642.2| - 9.7e-21 74.7 0.3 2.6e-10 40.7 0.1 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_17 PF13207.6 gi|118431285|ref|NP_147642.2| - 1.1e-15 58.3 0.0 1.8e-15 57.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|118431285|ref|NP_147642.2| - 4.7e-13 49.8 0.0 5.8e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|118431285|ref|NP_147642.2| - 3.6e-09 36.9 0.0 5.1e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|118431285|ref|NP_147642.2| - 4.9e-08 33.0 1.7 1.4e-07 31.5 0.2 2.0 1 1 1 2 2 2 1 Cytidylate kinase SKI PF01202.22 gi|118431285|ref|NP_147642.2| - 5.2e-07 29.9 0.1 1.7e-06 28.3 0.1 1.7 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.22 gi|118431285|ref|NP_147642.2| - 2.1e-05 24.6 0.0 4.3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.6 gi|118431285|ref|NP_147642.2| - 3.5e-05 24.1 0.7 0.00015 22.1 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118431285|ref|NP_147642.2| - 0.0016 18.8 0.0 0.0026 18.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|118431285|ref|NP_147642.2| - 0.003 17.9 0.0 0.0048 17.3 0.0 1.3 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.12 gi|118431285|ref|NP_147642.2| - 0.0036 17.2 0.0 0.028 14.3 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|118431285|ref|NP_147642.2| - 0.0045 17.3 0.0 0.01 16.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain E3_binding PF02817.17 gi|118431285|ref|NP_147642.2| - 0.0052 17.1 0.8 42 4.6 0.3 3.8 3 0 0 3 3 3 0 e3 binding domain AAA_16 PF13191.6 gi|118431285|ref|NP_147642.2| - 0.0064 16.9 0.0 0.008 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|118431285|ref|NP_147642.2| - 0.012 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|118431285|ref|NP_147642.2| - 0.02 14.8 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.14 gi|118431285|ref|NP_147642.2| - 0.036 14.0 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CoaE PF01121.20 gi|118431285|ref|NP_147642.2| - 0.037 13.7 0.2 7.3 6.2 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase RuvB_N PF05496.12 gi|118431285|ref|NP_147642.2| - 0.05 13.3 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain KTI12 PF08433.10 gi|118431285|ref|NP_147642.2| - 0.055 12.9 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Mg_chelatase PF01078.21 gi|118431285|ref|NP_147642.2| - 0.094 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 gi|118431285|ref|NP_147642.2| - 0.098 12.4 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Viral_helicase1 PF01443.18 gi|118431285|ref|NP_147642.2| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CobU PF02283.16 gi|118431285|ref|NP_147642.2| - 0.11 12.0 0.1 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase dNK PF01712.19 gi|118431285|ref|NP_147642.2| - 0.13 12.1 0.0 0.37 10.6 0.0 1.7 2 0 0 2 2 2 0 Deoxynucleoside kinase Ribosomal_L34e PF01199.18 gi|118431286|ref|YP_874870.1| - 5.5e-27 93.9 0.9 5.8e-27 93.8 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Amidase PF01425.21 gi|118431287|ref|NP_147644.2| - 9.5e-22 77.6 4.0 9.5e-22 77.6 4.0 1.5 2 0 0 2 2 2 1 Amidase Pox_A9 PF04835.12 gi|14601117|ref|NP_147645.1| - 0.03 14.4 0.7 0.03 14.4 0.7 2.0 3 0 0 3 3 3 0 A9 protein conserved region AAA_17 PF13207.6 gi|118431288|ref|NP_147646.2| - 2.1e-32 112.4 0.1 3.1e-32 111.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|118431288|ref|NP_147646.2| - 1.2e-11 45.3 0.0 2.4e-11 44.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|118431288|ref|NP_147646.2| - 4.5e-06 27.0 0.0 7.6e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431288|ref|NP_147646.2| - 8.2e-06 26.3 0.5 2e-05 25.1 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|118431288|ref|NP_147646.2| - 2.3e-05 24.1 0.4 2.8e-05 23.9 0.4 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|118431288|ref|NP_147646.2| - 5e-05 23.1 0.6 5e-05 23.1 0.6 2.0 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|118431288|ref|NP_147646.2| - 6.9e-05 22.8 0.2 0.00031 20.6 0.1 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|118431288|ref|NP_147646.2| - 6.9e-05 22.4 0.1 0.00012 21.6 0.1 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|118431288|ref|NP_147646.2| - 0.00027 21.2 0.3 0.00076 19.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|118431288|ref|NP_147646.2| - 0.00064 19.7 2.7 0.00094 19.1 1.1 2.0 2 1 0 2 2 2 1 NTPase MeaB PF03308.16 gi|118431288|ref|NP_147646.2| - 0.0011 18.0 1.1 0.0013 17.8 0.2 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|118431288|ref|NP_147646.2| - 0.0014 18.4 0.1 0.002 17.9 0.1 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase CLP1_P PF16575.5 gi|118431288|ref|NP_147646.2| - 0.0017 18.2 0.0 0.0061 16.4 0.0 1.8 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_33 PF13671.6 gi|118431288|ref|NP_147646.2| - 0.004 17.3 1.6 0.016 15.3 1.5 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118431288|ref|NP_147646.2| - 0.0046 17.4 0.6 0.0071 16.8 0.2 1.7 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|118431288|ref|NP_147646.2| - 0.0049 17.2 2.0 0.0084 16.4 1.8 1.8 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|118431288|ref|NP_147646.2| - 0.0055 16.3 1.7 0.007 16.0 0.4 1.8 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|118431288|ref|NP_147646.2| - 0.0076 16.3 0.1 0.0091 16.1 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|118431288|ref|NP_147646.2| - 0.01 15.9 0.3 0.097 12.8 0.3 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase CPT PF07931.12 gi|118431288|ref|NP_147646.2| - 0.016 15.0 0.2 0.022 14.6 0.2 1.3 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|118431288|ref|NP_147646.2| - 0.017 14.9 0.1 0.032 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|118431288|ref|NP_147646.2| - 0.018 14.5 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|118431288|ref|NP_147646.2| - 0.022 14.0 0.1 0.032 13.5 0.1 1.4 1 1 0 1 1 1 0 KAP family P-loop domain NACHT PF05729.12 gi|118431288|ref|NP_147646.2| - 0.024 14.6 0.3 0.043 13.7 0.3 1.5 1 1 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|118431288|ref|NP_147646.2| - 0.028 14.4 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|118431288|ref|NP_147646.2| - 0.029 14.4 0.2 0.049 13.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|118431288|ref|NP_147646.2| - 0.036 14.6 0.1 0.039 14.5 0.1 1.5 1 1 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 gi|118431288|ref|NP_147646.2| - 0.068 13.1 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF3638 PF12340.8 gi|118431288|ref|NP_147646.2| - 0.07 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) RsgA_GTPase PF03193.16 gi|118431288|ref|NP_147646.2| - 0.1 12.5 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_3 PF07726.11 gi|118431288|ref|NP_147646.2| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|118431288|ref|NP_147646.2| - 0.12 12.0 0.1 7.9 6.1 0.1 2.4 2 0 0 2 2 2 0 Thymidylate kinase DUF2075 PF09848.9 gi|118431288|ref|NP_147646.2| - 0.12 11.6 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Herpes_Helicase PF02689.14 gi|118431288|ref|NP_147646.2| - 0.14 10.1 0.0 0.18 9.7 0.0 1.1 1 0 0 1 1 1 0 Helicase Rad17 PF03215.15 gi|118431288|ref|NP_147646.2| - 0.19 11.7 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain APS_kinase PF01583.20 gi|118431288|ref|NP_147646.2| - 0.37 10.7 2.1 0.84 9.5 0.3 2.4 2 1 0 2 2 2 0 Adenylylsulphate kinase SecY PF00344.20 gi|118431289|ref|NP_147647.2| - 8.6e-63 212.4 12.8 1e-62 212.1 12.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|118431289|ref|NP_147647.2| - 2.2e-11 43.4 1.2 7.6e-11 41.7 1.2 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p DHBP_synthase PF00926.19 gi|118431291|ref|NP_147649.2| - 2.4e-44 151.2 0.0 2.7e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.19 gi|14601122|ref|NP_147650.1| - 1.9e-08 34.2 0.2 2.4e-08 33.9 0.2 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase SHR3_chaperone PF08229.11 gi|14601122|ref|NP_147650.1| - 0.15 11.0 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 ER membrane protein SH3 TruB_N PF01509.18 gi|118431292|ref|NP_147652.2| - 1e-25 90.8 0.1 7.2e-22 78.4 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|118431292|ref|NP_147652.2| - 1.5e-19 69.8 0.0 3.4e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|118431292|ref|NP_147652.2| - 2.6e-18 65.7 0.6 4.7e-18 64.9 0.6 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|118431292|ref|NP_147652.2| - 1.3e-15 57.2 0.3 2.8e-15 56.1 0.3 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|118431292|ref|NP_147652.2| - 0.00035 20.8 0.0 0.00083 19.6 0.0 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain PNP_UDP_1 PF01048.20 gi|118431293|ref|NP_147653.2| - 7.5e-36 123.5 0.1 8.8e-36 123.3 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HPS3_C PF14763.6 gi|14601126|ref|NP_147654.1| - 0.17 11.2 0.0 0.24 10.7 0.0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3, C-terminal DUF4147 PF13660.6 gi|118431294|ref|NP_147655.2| - 4.5e-71 239.0 0.0 6.3e-71 238.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|118431294|ref|NP_147655.2| - 9.4e-31 106.2 0.0 1.8e-30 105.3 0.0 1.5 1 0 0 1 1 1 1 MOFRL family NBD_C PF17042.5 gi|118431294|ref|NP_147655.2| - 0.1 13.1 0.1 0.28 11.7 0.1 1.8 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain LEA_2 PF03168.13 gi|118431296|ref|NP_147656.2| - 6.3e-12 45.9 0.0 8.2e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein GT87 PF09594.10 gi|118431297|ref|NP_147657.2| - 6e-06 26.2 40.6 6e-06 26.2 40.6 3.2 2 1 1 3 3 3 1 Glycosyltransferase family 87 Peptidase_M28 PF04389.17 gi|118431298|ref|NP_147659.2| - 1.9e-14 53.8 0.4 1.9e-12 47.3 0.4 2.1 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|118431298|ref|NP_147659.2| - 0.062 13.3 2.2 0.12 12.5 0.3 2.2 2 0 0 2 2 2 0 PA domain zf-ribbon_3 PF13248.6 gi|118431299|ref|NP_147661.2| - 0.0003 20.1 1.4 0.5 9.8 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|118431299|ref|NP_147661.2| - 0.011 15.2 1.3 0.12 11.9 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|118431299|ref|NP_147661.2| - 0.016 15.2 0.5 1.8 8.7 0.0 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 gi|118431299|ref|NP_147661.2| - 0.022 14.5 2.0 4.3 7.2 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|118431299|ref|NP_147661.2| - 0.05 13.2 0.8 7.2 6.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|118431299|ref|NP_147661.2| - 0.074 13.1 0.3 0.15 12.1 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon Mu-like_Com PF10122.9 gi|118431299|ref|NP_147661.2| - 0.1 12.1 6.4 0.35 10.4 0.4 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com UPF0547 PF10571.9 gi|118431299|ref|NP_147661.2| - 0.18 12.0 3.6 7.1 6.8 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-CCHC_5 PF14787.6 gi|118431299|ref|NP_147661.2| - 0.23 11.2 6.4 1.8 8.3 1.0 2.6 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zinc_ribbon_4 PF13717.6 gi|118431299|ref|NP_147661.2| - 0.3 11.0 1.4 8.6 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2688 PF10892.8 gi|118431299|ref|NP_147661.2| - 0.41 10.1 3.5 1.9 8.0 3.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-NADH-PPase PF09297.11 gi|118431299|ref|NP_147661.2| - 1 9.1 5.8 9.8 5.9 0.4 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|118431299|ref|NP_147661.2| - 1.3 8.9 8.9 3.5 7.6 1.5 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.8 gi|118431299|ref|NP_147661.2| - 1.3 8.9 9.0 3.9 7.4 1.3 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|118431299|ref|NP_147661.2| - 1.4 9.0 5.5 6.3 6.9 0.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|118431299|ref|NP_147661.2| - 1.4 9.6 5.7 11 6.8 0.5 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.16 gi|118431299|ref|NP_147661.2| - 3.4 7.8 7.4 3.2 7.8 0.1 3.3 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin_2 PF18073.1 gi|118431299|ref|NP_147661.2| - 6.8 6.5 6.4 9 6.1 0.7 2.6 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|14601135|ref|NP_147663.1| - 1.6e-09 37.5 0.4 2.6e-09 36.8 0.4 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|14601135|ref|NP_147663.1| - 5.1e-05 23.1 0.9 0.00011 22.0 0.9 1.6 1 0 0 1 1 1 1 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|14601135|ref|NP_147663.1| - 0.00015 21.4 3.1 0.00055 19.5 3.2 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|14601135|ref|NP_147663.1| - 0.0012 18.3 1.7 0.0032 16.9 1.7 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|14601135|ref|NP_147663.1| - 0.0056 16.6 0.4 0.013 15.4 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|14601135|ref|NP_147663.1| - 0.01 15.2 1.0 0.017 14.5 0.0 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|14601135|ref|NP_147663.1| - 0.012 15.0 3.4 0.23 10.9 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|14601135|ref|NP_147663.1| - 0.039 14.0 0.7 0.092 12.8 0.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|14601135|ref|NP_147663.1| - 0.041 13.6 5.9 0.54 10.0 1.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|14601135|ref|NP_147663.1| - 0.1 13.0 2.2 0.27 11.6 1.9 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-ACC PF17848.1 gi|14601135|ref|NP_147663.1| - 0.11 12.6 0.5 0.33 11.1 0.5 1.8 1 1 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain IBR PF01485.21 gi|14601135|ref|NP_147663.1| - 0.11 12.7 0.3 0.22 11.7 0.3 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-C2H2_12 PF18658.1 gi|14601135|ref|NP_147663.1| - 0.35 10.5 1.9 0.67 9.6 0.7 2.0 1 1 0 1 1 1 0 Zinc-finger C2H2-type Zn_ribbon_recom PF13408.6 gi|14601135|ref|NP_147663.1| - 0.62 10.6 7.5 5.4 7.6 4.7 2.6 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S27 PF01599.19 gi|14601135|ref|NP_147663.1| - 0.96 9.7 4.0 3.6 7.8 4.0 2.0 1 1 0 1 1 1 0 Ribosomal protein S27a zinc_ribbon_15 PF17032.5 gi|14601135|ref|NP_147663.1| - 1.8 9.4 4.1 11 6.9 0.1 2.4 2 1 0 2 2 2 0 zinc-ribbon family NOB1_Zn_bind PF08772.11 gi|14601135|ref|NP_147663.1| - 2.1 8.6 5.5 0.66 10.2 0.4 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF371 PF04027.13 gi|118431300|ref|NP_147664.2| - 6.8e-47 158.8 0.0 7.9e-47 158.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.19 gi|118431301|ref|NP_147666.2| - 1.7e-66 223.9 0.0 2.1e-66 223.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|118431301|ref|NP_147666.2| - 5.8e-11 42.4 0.0 7.7e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|118431301|ref|NP_147666.2| - 6.3e-07 30.0 0.0 1.1e-06 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|118431301|ref|NP_147666.2| - 2e-06 27.6 0.0 3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_11 PF08241.12 gi|118431301|ref|NP_147666.2| - 7.5e-06 26.5 0.0 1.9e-05 25.2 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain GCD14 PF08704.10 gi|118431301|ref|NP_147666.2| - 1.1e-05 25.3 0.0 1.6e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.16 gi|118431301|ref|NP_147666.2| - 1.5e-05 24.8 0.0 2.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|118431301|ref|NP_147666.2| - 0.00014 21.4 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|118431301|ref|NP_147666.2| - 0.00016 20.8 0.0 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|118431301|ref|NP_147666.2| - 0.00018 20.8 0.0 0.00027 20.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.17 gi|118431301|ref|NP_147666.2| - 0.00019 20.6 0.0 0.00026 20.2 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.6 gi|118431301|ref|NP_147666.2| - 0.00037 21.5 0.0 0.00073 20.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|118431301|ref|NP_147666.2| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|118431301|ref|NP_147666.2| - 0.0019 18.2 0.0 0.0026 17.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|118431301|ref|NP_147666.2| - 0.0029 17.0 0.0 0.0045 16.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|118431301|ref|NP_147666.2| - 0.033 14.0 0.0 0.071 12.9 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|118431301|ref|NP_147666.2| - 0.074 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DREV PF05219.12 gi|118431301|ref|NP_147666.2| - 0.12 11.5 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase CMAS PF02353.20 gi|118431301|ref|NP_147666.2| - 0.16 11.3 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|118431301|ref|NP_147666.2| - 0.28 10.5 0.0 0.4 10.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Pilin_N PF07790.11 gi|118431302|ref|NP_147667.2| - 2.3e-07 31.7 0.9 4.1e-07 30.8 0.9 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal TatD_DNase PF01026.21 gi|118431303|ref|NP_147668.2| - 4.4e-27 95.1 0.0 5.2e-27 94.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase tRNA-synt_1 PF00133.22 gi|14601141|ref|NP_147669.1| - 3.7e-60 203.8 0.0 5e-41 140.6 0.0 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|14601141|ref|NP_147669.1| - 2e-23 82.8 0.1 2.2e-10 39.9 0.0 3.9 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|14601141|ref|NP_147669.1| - 1e-21 77.5 0.1 1.9e-21 76.6 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|14601141|ref|NP_147669.1| - 4.5e-11 42.6 0.0 4e-09 36.3 0.0 2.3 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|14601141|ref|NP_147669.1| - 1.6e-08 34.3 0.0 0.00016 21.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain RecX PF02631.16 gi|14601141|ref|NP_147669.1| - 0.077 13.5 3.5 14 6.2 0.2 3.2 3 0 0 3 3 3 0 RecX family DHDPS PF00701.22 gi|118431304|ref|NP_147671.2| - 8e-49 165.9 0.0 1.1e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ABC_tran PF00005.27 gi|118431305|ref|NP_147673.2| - 3e-19 69.9 0.0 4.1e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|118431305|ref|NP_147673.2| - 3e-05 24.5 0.2 5.7e-05 23.6 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|118431305|ref|NP_147673.2| - 5e-05 23.2 0.5 0.028 14.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|118431305|ref|NP_147673.2| - 0.0019 18.4 0.0 0.003 17.7 0.0 1.3 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.8 gi|118431305|ref|NP_147673.2| - 0.0061 14.2 0.1 0.0075 13.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) NACHT PF05729.12 gi|118431305|ref|NP_147673.2| - 0.0081 16.1 0.3 0.065 13.1 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|118431305|ref|NP_147673.2| - 0.0096 15.6 0.1 0.016 14.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|118431305|ref|NP_147673.2| - 0.015 15.6 0.2 0.68 10.2 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|118431305|ref|NP_147673.2| - 0.032 14.0 0.1 0.083 12.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|118431305|ref|NP_147673.2| - 0.036 14.6 0.0 0.049 14.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|118431305|ref|NP_147673.2| - 0.05 13.8 0.1 0.083 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|118431305|ref|NP_147673.2| - 0.053 12.6 0.1 0.08 12.0 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.29 gi|118431305|ref|NP_147673.2| - 0.068 12.9 0.1 6.2 6.6 0.1 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase cobW PF02492.19 gi|118431305|ref|NP_147673.2| - 0.083 12.5 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|118431305|ref|NP_147673.2| - 0.088 12.4 0.4 0.16 11.5 0.4 1.4 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|118431305|ref|NP_147673.2| - 0.13 11.0 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RNA_helicase PF00910.22 gi|118431305|ref|NP_147673.2| - 0.18 12.2 0.0 0.26 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|118431305|ref|NP_147673.2| - 0.23 10.7 0.1 0.35 10.1 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin ATPase_2 PF01637.18 gi|118431305|ref|NP_147673.2| - 0.29 11.0 0.0 0.6 10.0 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea ABC2_membrane_2 PF12679.7 gi|14601146|ref|NP_147674.1| - 0.0002 20.7 8.6 0.0002 20.7 8.6 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|14601146|ref|NP_147674.1| - 0.00021 20.5 5.9 0.00026 20.2 5.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|14601146|ref|NP_147674.1| - 0.0046 16.9 5.5 0.026 14.5 5.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein VWA_2 PF13519.6 gi|118431306|ref|NP_147675.2| - 5.6e-10 39.8 0.0 6.8e-09 36.3 0.0 2.3 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|118431306|ref|NP_147675.2| - 1.4e-09 38.4 0.0 9.9e-09 35.7 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|118431306|ref|NP_147675.2| - 1.3e-07 31.2 2.1 1.3e-07 31.2 2.1 2.3 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|118431306|ref|NP_147675.2| - 8.1e-06 25.9 0.0 2.2e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain ATP-cone PF03477.16 gi|118431306|ref|NP_147675.2| - 0.16 12.6 0.5 0.41 11.2 0.1 1.9 2 0 0 2 2 2 0 ATP cone domain AAA_5 PF07728.14 gi|118431307|ref|NP_147676.2| - 1.1e-27 96.8 0.0 2.7e-27 95.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|118431307|ref|NP_147676.2| - 9.4e-09 35.0 0.1 3.2e-08 33.3 0.0 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_3 PF07726.11 gi|118431307|ref|NP_147676.2| - 1.9e-06 27.8 0.0 3.1e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|118431307|ref|NP_147676.2| - 3.5e-05 23.3 1.5 0.00046 19.6 0.0 3.0 4 0 0 4 4 4 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|118431307|ref|NP_147676.2| - 0.00011 22.6 0.0 0.00045 20.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|118431307|ref|NP_147676.2| - 0.0024 18.1 0.0 0.015 15.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|118431307|ref|NP_147676.2| - 0.0027 18.1 0.2 0.0097 16.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|118431307|ref|NP_147676.2| - 0.016 14.9 0.0 0.13 12.0 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain MCM PF00493.23 gi|118431307|ref|NP_147676.2| - 0.016 14.3 0.0 0.033 13.3 0.0 1.6 1 0 0 1 1 1 0 MCM P-loop domain AAA_7 PF12775.7 gi|118431307|ref|NP_147676.2| - 0.038 13.5 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region EF-hand_14 PF17959.1 gi|118431307|ref|NP_147676.2| - 0.066 13.6 0.2 6.9 7.1 0.0 2.6 2 0 0 2 2 2 0 EF-hand domain AAA_30 PF13604.6 gi|118431307|ref|NP_147676.2| - 0.095 12.4 0.0 0.22 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain HTH_46 PF15977.5 gi|118431307|ref|NP_147676.2| - 0.12 12.4 0.3 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding dCMP_cyt_deam_1 PF00383.23 gi|118431308|ref|NP_147677.2| - 7e-14 51.5 0.0 8.6e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|118431308|ref|NP_147677.2| - 5.7e-10 39.5 0.3 5.7e-10 39.5 0.3 1.4 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|118431308|ref|NP_147677.2| - 0.0001 22.0 0.6 0.021 14.4 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF5353 PF17304.2 gi|118431309|ref|NP_147678.2| - 0.34 10.7 2.1 0.43 10.3 0.1 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5353) DUF2070 PF09843.9 gi|118431309|ref|NP_147678.2| - 0.99 7.6 9.9 1.3 7.2 9.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Sm_multidrug_ex PF06695.11 gi|14601151|ref|NP_147679.1| - 6.3e-22 78.5 2.0 7.5e-22 78.2 2.0 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein SNARE_assoc PF09335.11 gi|14601151|ref|NP_147679.1| - 0.00099 19.6 6.7 0.0021 18.5 6.7 1.4 1 1 0 1 1 1 1 SNARE associated Golgi protein DUF760 PF05542.11 gi|118431310|ref|NP_147680.2| - 0.0046 17.3 0.7 0.016 15.6 0.3 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF760) Phage_TAC_12 PF12363.8 gi|118431310|ref|NP_147680.2| - 0.081 13.4 0.1 7.6 7.0 0.0 2.2 2 0 0 2 2 2 0 Phage tail assembly chaperone protein, TAC Pyr_redox_2 PF07992.14 gi|14602197|ref|NP_147681.1| - 1.2e-23 83.7 0.0 1.3e-22 80.4 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|14602197|ref|NP_147681.1| - 4.7e-06 27.1 0.0 0.8 10.3 0.0 3.6 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|14602197|ref|NP_147681.1| - 2.3e-05 24.2 0.1 0.0075 15.9 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|14602197|ref|NP_147681.1| - 0.00011 22.4 0.3 0.00041 20.5 0.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|14602197|ref|NP_147681.1| - 0.00027 19.9 0.1 0.00046 19.2 0.1 1.3 1 0 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|14602197|ref|NP_147681.1| - 0.00053 20.0 0.1 0.14 12.1 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|14602197|ref|NP_147681.1| - 0.00079 18.2 0.0 0.067 11.9 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|14602197|ref|NP_147681.1| - 0.0096 15.0 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|14602197|ref|NP_147681.1| - 0.19 10.8 0.1 0.74 8.8 0.1 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Nitroreductase PF00881.24 gi|14601153|ref|NP_147682.1| - 1.3e-22 80.7 1.9 1.8e-21 76.9 1.9 2.1 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|14601153|ref|NP_147682.1| - 7e-05 22.5 0.0 0.15 11.6 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase Peptidase_M48 PF01435.18 gi|118431311|ref|NP_147683.2| - 9.9e-37 126.6 0.0 1.8e-36 125.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|118431311|ref|NP_147683.2| - 0.011 14.9 0.1 0.026 13.7 0.0 1.6 2 0 0 2 2 2 0 BlaR1 peptidase M56 DUF2070 PF09843.9 gi|118431311|ref|NP_147683.2| - 1.1 7.5 3.6 0.59 8.3 0.1 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) Zn_peptidase_2 PF04298.12 gi|118431311|ref|NP_147683.2| - 3 7.2 7.9 0.075 12.4 1.2 1.7 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase IF-2B PF01008.17 gi|118431312|ref|NP_147685.2| - 1.3e-23 83.7 0.0 3e-23 82.4 0.0 1.6 1 1 0 1 1 1 1 Initiation factor 2 subunit family T2SSF PF00482.23 gi|118431312|ref|NP_147685.2| - 0.0005 20.0 1.4 0.00086 19.3 1.4 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F YjeF_N PF03853.15 gi|118431312|ref|NP_147685.2| - 0.0026 17.7 0.3 0.0045 16.9 0.3 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus Peripla_BP_2 PF01497.18 gi|118431313|ref|NP_147686.2| - 1.1e-30 106.9 2.2 1.5e-30 106.5 0.0 2.0 2 0 0 2 2 2 1 Periplasmic binding protein DUF1664 PF07889.12 gi|118431313|ref|NP_147686.2| - 3.6e-06 27.0 2.5 0.0061 16.6 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.9 gi|118431313|ref|NP_147686.2| - 1.1e-05 25.5 9.6 4.4e-05 23.5 6.2 2.6 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.12 gi|118431313|ref|NP_147686.2| - 1.2e-05 25.7 3.3 0.06 13.8 0.8 3.3 1 1 2 3 3 3 3 Nucleopolyhedrovirus P10 protein FmiP_Thoc5 PF09766.9 gi|118431313|ref|NP_147686.2| - 1.6e-05 24.4 2.1 0.073 12.4 1.0 2.1 1 1 1 2 2 2 2 Fms-interacting protein/Thoc5 DUF948 PF06103.11 gi|118431313|ref|NP_147686.2| - 1.6e-05 25.0 0.2 0.16 12.2 0.0 3.0 2 1 1 3 3 2 1 Bacterial protein of unknown function (DUF948) Tropomyosin PF00261.20 gi|118431313|ref|NP_147686.2| - 1.8e-05 24.2 6.2 2.9e-05 23.6 6.2 1.2 1 0 0 1 1 1 1 Tropomyosin Laminin_II PF06009.12 gi|118431313|ref|NP_147686.2| - 2.1e-05 24.6 4.5 0.1 12.6 0.1 2.2 1 1 1 2 2 2 2 Laminin Domain II DUF2730 PF10805.8 gi|118431313|ref|NP_147686.2| - 2.3e-05 24.4 3.3 0.00082 19.4 0.3 3.2 2 1 1 3 3 3 1 Protein of unknown function (DUF2730) KxDL PF10241.9 gi|118431313|ref|NP_147686.2| - 2.8e-05 24.3 0.9 0.017 15.4 0.0 2.6 1 1 1 2 2 2 1 Uncharacterized conserved protein Spc7 PF08317.11 gi|118431313|ref|NP_147686.2| - 2.9e-05 23.1 8.7 5.9e-05 22.1 8.4 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein ABC_tran_CTD PF16326.5 gi|118431313|ref|NP_147686.2| - 4.3e-05 23.7 17.3 0.0026 17.9 7.5 4.0 3 1 1 4 4 3 2 ABC transporter C-terminal domain Tropomyosin_1 PF12718.7 gi|118431313|ref|NP_147686.2| - 8.5e-05 22.7 8.2 0.00027 21.1 8.1 1.8 1 1 0 1 1 1 1 Tropomyosin like EzrA PF06160.12 gi|118431313|ref|NP_147686.2| - 9.3e-05 20.8 5.0 0.0074 14.5 0.9 1.8 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4795 PF16043.5 gi|118431313|ref|NP_147686.2| - 9.9e-05 22.0 0.7 0.00016 21.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) DUF16 PF01519.16 gi|118431313|ref|NP_147686.2| - 0.00012 22.5 3.9 0.17 12.4 0.8 2.3 1 1 1 2 2 2 2 Protein of unknown function DUF16 Snapin_Pallidin PF14712.6 gi|118431313|ref|NP_147686.2| - 0.00019 21.8 4.2 0.37 11.2 0.0 2.5 1 1 1 2 2 2 2 Snapin/Pallidin FPP PF05911.11 gi|118431313|ref|NP_147686.2| - 0.0002 19.7 5.8 0.00026 19.4 5.8 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil HrpB7 PF09486.10 gi|118431313|ref|NP_147686.2| - 0.00022 21.6 10.0 0.00043 20.7 10.0 1.4 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) ATG16 PF08614.11 gi|118431313|ref|NP_147686.2| - 0.00027 21.3 13.1 0.0038 17.5 13.1 2.0 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) Baculo_PEP_C PF04513.12 gi|118431313|ref|NP_147686.2| - 0.00032 20.8 3.2 0.027 14.5 1.2 2.5 2 1 2 4 4 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus TelA PF05816.11 gi|118431313|ref|NP_147686.2| - 0.00036 19.7 1.6 0.0012 17.9 1.6 1.6 1 1 0 1 1 1 1 Toxic anion resistance protein (TelA) BLOC1_2 PF10046.9 gi|118431313|ref|NP_147686.2| - 0.00039 20.6 7.5 0.14 12.5 1.7 3.1 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 HemX PF04375.14 gi|118431313|ref|NP_147686.2| - 0.00065 19.1 8.4 0.2 10.9 8.4 2.1 1 1 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase FlaC_arch PF05377.11 gi|118431313|ref|NP_147686.2| - 0.00068 20.0 9.6 1.1 9.7 0.2 5.0 3 1 3 6 6 4 0 Flagella accessory protein C (FlaC) Nup54 PF13874.6 gi|118431313|ref|NP_147686.2| - 0.00086 19.4 7.1 0.015 15.4 7.1 2.1 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 APG6_N PF17675.1 gi|118431313|ref|NP_147686.2| - 0.00091 19.8 10.2 0.0019 18.8 10.2 1.5 1 0 0 1 1 1 1 Apg6 coiled-coil region CLZ PF16526.5 gi|118431313|ref|NP_147686.2| - 0.00094 19.5 10.3 0.61 10.5 0.8 4.3 1 1 3 4 4 4 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Zw10 PF06248.13 gi|118431313|ref|NP_147686.2| - 0.0011 17.7 0.8 0.0015 17.2 0.8 1.2 1 0 0 1 1 1 1 Centromere/kinetochore Zw10 FapA PF03961.13 gi|118431313|ref|NP_147686.2| - 0.0013 17.4 1.3 0.81 8.2 0.0 2.2 1 1 1 2 2 2 1 Flagellar Assembly Protein A IFT57 PF10498.9 gi|118431313|ref|NP_147686.2| - 0.0015 17.6 2.9 0.0043 16.1 2.9 1.6 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 XhlA PF10779.9 gi|118431313|ref|NP_147686.2| - 0.0018 18.4 2.8 0.49 10.6 0.7 3.4 1 1 2 3 3 3 2 Haemolysin XhlA Allexi_40kDa PF05549.11 gi|118431313|ref|NP_147686.2| - 0.0019 17.8 0.4 0.95 8.9 0.0 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein HAP1_N PF04849.13 gi|118431313|ref|NP_147686.2| - 0.002 17.4 8.3 0.044 13.0 0.3 2.1 1 1 1 2 2 2 1 HAP1 N-terminal conserved region GAS PF13851.6 gi|118431313|ref|NP_147686.2| - 0.002 17.5 3.9 0.0063 15.9 3.9 1.7 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Taxilin PF09728.9 gi|118431313|ref|NP_147686.2| - 0.0021 17.3 0.1 0.0039 16.4 0.0 1.4 1 1 0 1 1 1 1 Myosin-like coiled-coil protein SKA2 PF16740.5 gi|118431313|ref|NP_147686.2| - 0.0022 17.8 5.0 3.6 7.4 0.1 3.2 1 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 CCDC154 PF15450.6 gi|118431313|ref|NP_147686.2| - 0.0025 16.5 4.1 0.0035 16.0 4.1 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 154 FH2 PF02181.23 gi|118431313|ref|NP_147686.2| - 0.0025 17.0 1.7 0.0088 15.2 1.7 1.8 1 1 0 1 1 1 1 Formin Homology 2 Domain AAA_13 PF13166.6 gi|118431313|ref|NP_147686.2| - 0.003 16.3 1.1 0.0043 15.8 1.1 1.1 1 0 0 1 1 1 1 AAA domain MscS_porin PF12795.7 gi|118431313|ref|NP_147686.2| - 0.0032 17.0 16.2 0.064 12.8 16.4 2.0 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain ALIX_LYPXL_bnd PF13949.6 gi|118431313|ref|NP_147686.2| - 0.0033 16.8 5.4 0.0065 15.8 5.4 1.4 1 1 0 1 1 1 1 ALIX V-shaped domain binding to HIV Myosin_tail_1 PF01576.19 gi|118431313|ref|NP_147686.2| - 0.0037 15.2 6.2 0.005 14.7 6.2 1.1 1 0 0 1 1 1 1 Myosin tail RmuC PF02646.16 gi|118431313|ref|NP_147686.2| - 0.0038 16.4 3.1 0.12 11.5 0.1 2.2 1 1 1 2 2 2 1 RmuC family Exonuc_VII_L PF02601.15 gi|118431313|ref|NP_147686.2| - 0.0039 16.8 1.2 0.0062 16.1 1.2 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit HMMR_N PF15905.5 gi|118431313|ref|NP_147686.2| - 0.0041 16.6 3.1 0.0059 16.1 3.1 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Atg14 PF10186.9 gi|118431313|ref|NP_147686.2| - 0.0055 15.8 5.7 0.2 10.7 5.9 2.0 1 1 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Filament PF00038.21 gi|118431313|ref|NP_147686.2| - 0.0057 16.3 9.0 0.022 14.4 9.0 1.8 1 1 0 1 1 1 1 Intermediate filament protein ZapB PF06005.12 gi|118431313|ref|NP_147686.2| - 0.0058 17.0 8.5 0.069 13.6 3.6 2.4 2 0 0 2 2 2 1 Cell division protein ZapB DUF5082 PF16888.5 gi|118431313|ref|NP_147686.2| - 0.0076 16.5 3.4 0.069 13.4 3.8 2.0 2 0 0 2 2 1 1 Domain of unknown function (DUF5082) FUSC PF04632.12 gi|118431313|ref|NP_147686.2| - 0.0081 14.8 1.9 0.012 14.2 1.9 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family TPR_MLP1_2 PF07926.12 gi|118431313|ref|NP_147686.2| - 0.0084 16.2 12.5 0.17 11.9 0.8 2.3 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein KASH_CCD PF14662.6 gi|118431313|ref|NP_147686.2| - 0.0089 15.9 6.7 0.014 15.2 6.7 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH PI3K_P85_iSH2 PF16454.5 gi|118431313|ref|NP_147686.2| - 0.0099 15.5 1.1 0.019 14.6 1.1 1.4 1 0 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TBCC_N PF16752.5 gi|118431313|ref|NP_147686.2| - 0.011 16.2 5.8 0.031 14.7 5.8 1.8 1 1 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain TMP_2 PF06791.13 gi|118431313|ref|NP_147686.2| - 0.011 15.4 4.7 0.029 14.0 1.8 2.3 1 1 1 2 2 2 0 Prophage tail length tape measure protein UPF0242 PF06785.11 gi|118431313|ref|NP_147686.2| - 0.012 15.8 0.9 0.025 14.7 0.9 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF3584 PF12128.8 gi|118431313|ref|NP_147686.2| - 0.013 13.1 6.4 0.017 12.7 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMF_TATA_bd PF12325.8 gi|118431313|ref|NP_147686.2| - 0.015 15.5 8.4 0.53 10.5 5.6 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DHR10 PF18595.1 gi|118431313|ref|NP_147686.2| - 0.016 15.2 10.0 2.4 8.3 0.2 2.3 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain TMPIT PF07851.13 gi|118431313|ref|NP_147686.2| - 0.016 14.4 1.4 0.086 12.1 0.7 1.7 1 1 1 2 2 2 0 TMPIT-like protein CCDC144C PF14915.6 gi|118431313|ref|NP_147686.2| - 0.019 14.1 3.6 0.029 13.5 3.6 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region Laminin_I PF06008.14 gi|118431313|ref|NP_147686.2| - 0.02 14.6 7.6 0.033 13.9 7.6 1.2 1 0 0 1 1 1 0 Laminin Domain I ADIP PF11559.8 gi|118431313|ref|NP_147686.2| - 0.022 14.8 5.0 0.86 9.7 1.9 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Uso1_p115_C PF04871.13 gi|118431313|ref|NP_147686.2| - 0.026 14.9 11.6 0.13 12.6 11.6 2.0 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region FlxA PF14282.6 gi|118431313|ref|NP_147686.2| - 0.028 14.4 7.4 0.27 11.2 4.4 2.8 2 1 2 4 4 3 0 FlxA-like protein FliJ PF02050.16 gi|118431313|ref|NP_147686.2| - 0.029 14.6 10.7 0.16 12.2 4.4 2.3 2 0 0 2 2 2 0 Flagellar FliJ protein Matrilin_ccoil PF10393.9 gi|118431313|ref|NP_147686.2| - 0.029 14.2 10.6 0.075 12.9 0.8 4.0 4 0 0 4 4 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Phasin PF05597.11 gi|118431313|ref|NP_147686.2| - 0.029 14.4 4.3 0.029 14.4 1.6 2.2 1 1 1 2 2 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Dynamitin PF04912.14 gi|118431313|ref|NP_147686.2| - 0.03 13.6 9.6 0.15 11.4 6.9 2.0 1 1 1 2 2 2 0 Dynamitin DUF4763 PF15960.5 gi|118431313|ref|NP_147686.2| - 0.031 13.6 8.0 0.1 11.9 8.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) SesA PF17107.5 gi|118431313|ref|NP_147686.2| - 0.031 14.4 2.1 0.21 11.8 2.1 2.1 1 1 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Seryl_tRNA_N PF02403.22 gi|118431313|ref|NP_147686.2| - 0.032 14.5 6.4 1.5 9.1 0.2 2.7 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain JIP_LZII PF16471.5 gi|118431313|ref|NP_147686.2| - 0.036 14.3 6.4 5.4 7.3 0.4 3.4 3 1 0 3 3 3 0 JNK-interacting protein leucine zipper II BLOC1S3 PF15753.5 gi|118431313|ref|NP_147686.2| - 0.036 14.2 1.7 1.2 9.3 0.1 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 Cast PF10174.9 gi|118431313|ref|NP_147686.2| - 0.036 12.3 1.9 0.048 11.9 1.9 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone TBCA PF02970.16 gi|118431313|ref|NP_147686.2| - 0.036 14.4 3.2 0.065 13.6 0.9 2.2 1 1 1 2 2 1 0 Tubulin binding cofactor A HBM PF16591.5 gi|118431313|ref|NP_147686.2| - 0.039 13.4 5.3 0.065 12.6 5.3 1.4 1 0 0 1 1 1 0 Helical bimodular sensor domain HR1 PF02185.16 gi|118431313|ref|NP_147686.2| - 0.039 14.1 9.2 5.8 7.1 1.1 3.6 2 2 1 3 3 3 0 Hr1 repeat Syntaxin-6_N PF09177.11 gi|118431313|ref|NP_147686.2| - 0.04 14.5 7.3 0.36 11.4 4.1 3.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Occludin_ELL PF07303.13 gi|118431313|ref|NP_147686.2| - 0.041 14.6 0.7 0.58 10.9 0.2 2.4 1 1 1 2 2 2 0 Occludin homology domain DUF2408 PF10303.9 gi|118431313|ref|NP_147686.2| - 0.042 14.4 4.3 0.39 11.3 4.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Mod_r PF07200.13 gi|118431313|ref|NP_147686.2| - 0.042 13.9 7.3 0.17 12.0 1.4 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Phage_GP20 PF06810.11 gi|118431313|ref|NP_147686.2| - 0.043 13.6 1.3 0.23 11.3 0.7 2.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF677 PF05055.12 gi|118431313|ref|NP_147686.2| - 0.043 12.7 0.2 0.066 12.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF4363 PF14276.6 gi|118431313|ref|NP_147686.2| - 0.044 13.9 0.7 0.12 12.5 0.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4363) Tmemb_cc2 PF10267.9 gi|118431313|ref|NP_147686.2| - 0.044 12.9 7.0 0.28 10.3 7.1 2.0 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF4201 PF13870.6 gi|118431313|ref|NP_147686.2| - 0.047 13.4 1.9 0.43 10.3 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) MAD PF05557.13 gi|118431313|ref|NP_147686.2| - 0.048 12.0 5.4 0.065 11.6 5.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein Spectrin PF00435.21 gi|118431313|ref|NP_147686.2| - 0.048 14.1 6.3 2.5 8.6 6.3 2.6 1 1 0 1 1 1 0 Spectrin repeat DUF745 PF05335.13 gi|118431313|ref|NP_147686.2| - 0.05 13.3 5.5 1.5 8.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF745) TolA_bind_tri PF16331.5 gi|118431313|ref|NP_147686.2| - 0.05 13.7 15.1 0.48 10.5 8.1 3.3 1 1 1 3 3 3 0 TolA binding protein trimerisation Muted PF14942.6 gi|118431313|ref|NP_147686.2| - 0.051 13.9 3.6 0.06 13.7 1.5 1.9 1 1 1 2 2 1 0 Organelle biogenesis, Muted-like protein Prefoldin_2 PF01920.20 gi|118431313|ref|NP_147686.2| - 0.051 13.5 8.8 28 4.7 0.3 3.9 1 1 0 2 2 2 0 Prefoldin subunit DUF3450 PF11932.8 gi|118431313|ref|NP_147686.2| - 0.052 12.9 10.8 0.17 11.2 5.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) HIP1_clath_bdg PF16515.5 gi|118431313|ref|NP_147686.2| - 0.052 14.2 7.7 3.5 8.3 3.0 2.4 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 COG6 PF06419.11 gi|118431313|ref|NP_147686.2| - 0.056 11.6 3.2 0.15 10.2 2.0 2.0 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Spc24 PF08286.11 gi|118431313|ref|NP_147686.2| - 0.059 13.6 11.3 0.96 9.7 1.6 3.5 1 1 3 4 4 3 0 Spc24 subunit of Ndc80 DUF4988 PF16378.5 gi|118431313|ref|NP_147686.2| - 0.059 13.0 2.1 6.2 6.5 0.2 3.6 2 2 1 3 3 3 0 Domain of unknown function Sec8_exocyst PF04048.14 gi|118431313|ref|NP_147686.2| - 0.062 13.2 1.7 0.12 12.3 1.2 1.7 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DUF812 PF05667.11 gi|118431313|ref|NP_147686.2| - 0.062 12.2 6.4 0.39 9.5 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) PspA_IM30 PF04012.12 gi|118431313|ref|NP_147686.2| - 0.064 12.8 12.3 2.4 7.7 9.5 2.3 1 1 1 2 2 2 0 PspA/IM30 family Sec34 PF04136.15 gi|118431313|ref|NP_147686.2| - 0.065 13.1 4.0 5 7.0 0.1 2.3 1 1 1 2 2 2 0 Sec34-like family DUF4446 PF14584.6 gi|118431313|ref|NP_147686.2| - 0.068 13.2 0.3 3.1 7.8 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Csm1_N PF18504.1 gi|118431313|ref|NP_147686.2| - 0.068 13.5 11.0 4.2 7.8 0.6 4.2 1 1 3 4 4 4 0 Csm1 N-terminal domain YabA PF06156.13 gi|118431313|ref|NP_147686.2| - 0.075 13.7 3.7 0.59 10.8 0.7 2.5 1 1 1 2 2 2 0 Initiation control protein YabA HOOK PF05622.12 gi|118431313|ref|NP_147686.2| - 0.078 11.1 7.9 0.16 10.0 7.9 1.4 1 1 0 1 1 1 0 HOOK protein DUF4349 PF14257.6 gi|118431313|ref|NP_147686.2| - 0.094 12.2 17.2 0.09 12.2 6.6 3.5 1 1 1 3 3 3 0 Domain of unknown function (DUF4349) Fib_alpha PF08702.10 gi|118431313|ref|NP_147686.2| - 0.11 12.7 2.4 0.41 10.8 1.7 1.8 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family SPAM PF02090.15 gi|118431313|ref|NP_147686.2| - 0.11 12.3 1.6 5.9 6.7 0.4 2.2 1 1 1 2 2 2 0 Salmonella surface presentation of antigen gene type M protein DUF4407 PF14362.6 gi|118431313|ref|NP_147686.2| - 0.11 11.8 5.4 0.68 9.2 6.5 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) V-SNARE_C PF12352.8 gi|118431313|ref|NP_147686.2| - 0.12 12.7 1.8 79 3.6 1.2 3.2 3 0 0 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus DUF4164 PF13747.6 gi|118431313|ref|NP_147686.2| - 0.12 12.6 13.5 0.37 11.1 6.7 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DUF2576 PF10845.8 gi|118431313|ref|NP_147686.2| - 0.12 12.0 0.0 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2576) LUC7 PF03194.15 gi|118431313|ref|NP_147686.2| - 0.12 12.0 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 LUC7 N_terminus DASH_Hsk3 PF08227.11 gi|118431313|ref|NP_147686.2| - 0.13 12.7 13.4 0.33 11.3 2.8 3.5 4 0 0 4 4 2 0 DASH complex subunit Hsk3 like LMBR1 PF04791.16 gi|118431313|ref|NP_147686.2| - 0.14 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Jnk-SapK_ap_N PF09744.9 gi|118431313|ref|NP_147686.2| - 0.14 12.4 6.7 5.2 7.3 0.3 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Tektin PF03148.14 gi|118431313|ref|NP_147686.2| - 0.14 10.9 5.6 0.2 10.4 5.6 1.2 1 0 0 1 1 1 0 Tektin family MIP-T3_C PF17749.1 gi|118431313|ref|NP_147686.2| - 0.14 12.1 3.5 0.18 11.8 1.6 1.8 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Fez1 PF06818.15 gi|118431313|ref|NP_147686.2| - 0.14 12.6 6.9 0.36 11.3 6.9 1.6 1 1 0 1 1 1 0 Fez1 DUF2884 PF11101.8 gi|118431313|ref|NP_147686.2| - 0.15 11.5 5.2 0.35 10.3 5.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) Vps53_N PF04100.12 gi|118431313|ref|NP_147686.2| - 0.15 11.0 1.7 0.24 10.3 1.7 1.3 1 0 0 1 1 1 0 Vps53-like, N-terminal CENP-K PF11802.8 gi|118431313|ref|NP_147686.2| - 0.16 11.5 4.2 1.3 8.5 0.6 2.1 1 1 1 2 2 2 0 Centromere-associated protein K CR6_interact PF10147.9 gi|118431313|ref|NP_147686.2| - 0.17 11.6 0.5 0.26 11.0 0.5 1.3 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Spc29 PF17082.5 gi|118431313|ref|NP_147686.2| - 0.17 11.7 0.0 0.31 10.8 0.0 1.4 1 1 0 1 1 1 0 Spindle Pole Component 29 DUF3829 PF12889.7 gi|118431313|ref|NP_147686.2| - 0.18 11.3 0.3 0.48 9.8 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) DASH_Duo1 PF08651.10 gi|118431313|ref|NP_147686.2| - 0.18 11.6 0.4 2.5 8.0 0.0 2.8 1 1 0 2 2 2 0 DASH complex subunit Duo1 CCDC-167 PF15188.6 gi|118431313|ref|NP_147686.2| - 0.19 12.1 8.1 0.13 12.6 1.6 3.1 1 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 Col_cuticle_N PF01484.17 gi|118431313|ref|NP_147686.2| - 0.19 11.8 0.1 0.4 10.8 0.1 1.6 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain Miff PF05644.11 gi|118431313|ref|NP_147686.2| - 0.19 11.3 1.1 0.35 10.5 1.1 1.3 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff DUF148 PF02520.17 gi|118431313|ref|NP_147686.2| - 0.2 11.8 1.7 17 5.5 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function DUF148 Prominin PF05478.11 gi|118431313|ref|NP_147686.2| - 0.2 9.6 0.1 0.3 9.0 0.1 1.2 1 0 0 1 1 1 0 Prominin DUF4525 PF15027.6 gi|118431313|ref|NP_147686.2| - 0.21 11.3 0.4 23 4.7 0.0 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4525) STAT_alpha PF01017.20 gi|118431313|ref|NP_147686.2| - 0.22 11.4 1.6 0.37 10.7 1.6 1.3 1 0 0 1 1 1 0 STAT protein, all-alpha domain YscO PF07321.12 gi|118431313|ref|NP_147686.2| - 0.23 11.4 11.9 1.4 8.8 9.6 2.2 1 1 1 2 2 2 0 Type III secretion protein YscO Mating_N PF12731.7 gi|118431313|ref|NP_147686.2| - 0.24 11.5 2.1 0.45 10.6 1.6 1.7 1 1 0 1 1 1 0 Mating-type protein beta 1 CorA PF01544.18 gi|118431313|ref|NP_147686.2| - 0.25 10.6 7.4 0.79 9.0 7.4 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Alpha-E PF04168.12 gi|118431313|ref|NP_147686.2| - 0.26 11.1 6.1 0.082 12.7 3.5 1.5 2 0 0 2 2 1 0 A predicted alpha-helical domain with a conserved ER motif. LXG PF04740.12 gi|118431313|ref|NP_147686.2| - 0.26 11.0 5.6 8.7 6.0 0.3 3.2 1 1 3 4 4 4 0 LXG domain of WXG superfamily COG2 PF06148.11 gi|118431313|ref|NP_147686.2| - 0.27 11.3 5.2 0.92 9.6 2.6 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Bacillus_HBL PF05791.11 gi|118431313|ref|NP_147686.2| - 0.28 11.0 2.2 12 5.7 0.5 2.3 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF4618 PF15397.6 gi|118431313|ref|NP_147686.2| - 0.28 10.6 2.9 0.44 9.9 2.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) DUF1043 PF06295.12 gi|118431313|ref|NP_147686.2| - 0.28 11.2 2.2 3.6 7.6 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) YkyA PF10368.9 gi|118431313|ref|NP_147686.2| - 0.3 10.8 4.7 0.59 9.8 4.7 1.5 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein Rho_Binding PF08912.11 gi|118431313|ref|NP_147686.2| - 0.31 11.9 4.6 24 5.8 0.5 3.3 1 1 3 4 4 2 0 Rho Binding Nuc_N PF14448.6 gi|118431313|ref|NP_147686.2| - 0.31 10.9 3.4 15 5.5 0.1 2.8 2 1 0 2 2 2 0 Nuclease N terminal TACC_C PF05010.14 gi|118431313|ref|NP_147686.2| - 0.31 10.8 2.3 1.5 8.5 2.3 1.8 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal SKA1 PF07160.12 gi|118431313|ref|NP_147686.2| - 0.32 10.8 2.1 3.4 7.4 1.1 2.2 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 RP-C_C PF11800.8 gi|118431313|ref|NP_147686.2| - 0.32 11.1 3.8 0.64 10.1 2.3 2.1 2 1 0 2 2 1 0 Replication protein C C-terminal region HAUS-augmin3 PF14932.6 gi|118431313|ref|NP_147686.2| - 0.34 10.4 8.0 0.96 9.0 8.0 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Uds1 PF15456.6 gi|118431313|ref|NP_147686.2| - 0.35 11.0 8.0 11 6.2 0.5 3.0 1 1 1 2 2 2 0 Up-regulated During Septation Bap31_Bap29_C PF18035.1 gi|118431313|ref|NP_147686.2| - 0.39 10.8 1.9 1.4 9.0 0.0 2.6 3 0 0 3 3 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain TraF_2 PF13729.6 gi|118431313|ref|NP_147686.2| - 0.45 9.8 1.7 20 4.4 0.1 2.1 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein phiKZ_IP PF12699.7 gi|118431313|ref|NP_147686.2| - 0.46 9.6 2.2 1.5 7.9 0.2 2.3 1 1 1 2 2 2 0 phiKZ-like phage internal head proteins OmpH PF03938.14 gi|118431313|ref|NP_147686.2| - 0.55 10.6 7.2 5.1 7.4 7.2 2.1 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Prefoldin PF02996.17 gi|118431313|ref|NP_147686.2| - 0.55 10.2 9.0 11 6.0 1.5 3.6 1 1 3 4 4 4 0 Prefoldin subunit SlyX PF04102.12 gi|118431313|ref|NP_147686.2| - 0.56 10.9 14.9 1.4 9.6 2.4 3.8 2 1 1 4 4 3 0 SlyX Apt1 PF10351.9 gi|118431313|ref|NP_147686.2| - 0.57 9.0 3.0 1.1 8.0 3.0 1.4 1 1 0 1 1 1 0 Golgi-body localisation protein domain Macoilin PF09726.9 gi|118431313|ref|NP_147686.2| - 0.57 8.7 4.1 0.77 8.2 4.1 1.1 1 0 0 1 1 1 0 Macoilin family PspB PF06667.12 gi|118431313|ref|NP_147686.2| - 0.59 10.2 11.7 1.7 8.8 1.1 3.8 2 1 2 4 4 3 0 Phage shock protein B Fmp27_WPPW PF10359.9 gi|118431313|ref|NP_147686.2| - 0.62 8.9 2.5 1.6 7.5 2.5 1.6 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1978 PF09321.10 gi|118431313|ref|NP_147686.2| - 0.63 9.3 3.3 1.1 8.6 3.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) Phage_GPO PF05929.11 gi|118431313|ref|NP_147686.2| - 0.66 9.5 3.5 1.7 8.2 3.6 1.6 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase T3SSipB PF16535.5 gi|118431313|ref|NP_147686.2| - 0.68 10.4 6.7 5.4 7.5 6.7 2.0 1 1 0 1 1 1 0 Type III cell invasion protein SipB Swi5 PF07061.11 gi|118431313|ref|NP_147686.2| - 0.69 10.0 5.5 8.7 6.5 0.7 3.6 2 1 1 3 3 2 0 Swi5 GPS2_interact PF15784.5 gi|118431313|ref|NP_147686.2| - 0.7 10.4 3.5 0.19 12.2 0.5 1.6 2 0 0 2 2 1 0 G-protein pathway suppressor 2-interacting domain Spore_III_AB PF09548.10 gi|118431313|ref|NP_147686.2| - 0.71 10.0 3.7 1.4 9.0 3.7 1.4 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) GrpE PF01025.19 gi|118431313|ref|NP_147686.2| - 0.87 9.2 4.4 4.8 6.8 1.3 2.3 1 1 1 2 2 2 0 GrpE Sipho_Gp157 PF05565.11 gi|118431313|ref|NP_147686.2| - 0.9 9.5 5.4 12 5.9 0.2 2.2 1 1 0 2 2 2 0 Siphovirus Gp157 WXG100 PF06013.12 gi|118431313|ref|NP_147686.2| - 0.96 9.7 8.8 10 6.4 0.2 3.6 1 1 2 3 3 3 0 Proteins of 100 residues with WXG DUF4200 PF13863.6 gi|118431313|ref|NP_147686.2| - 0.99 9.8 7.9 6.4 7.2 4.3 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Tup_N PF08581.10 gi|118431313|ref|NP_147686.2| - 1.1 9.6 4.7 19 5.7 0.5 2.6 1 1 0 2 2 2 0 Tup N-terminal Rx_N PF18052.1 gi|118431313|ref|NP_147686.2| - 1.3 9.4 6.8 2.7 8.3 0.9 2.5 1 1 1 2 2 2 0 Rx N-terminal domain Cnn_1N PF07989.11 gi|118431313|ref|NP_147686.2| - 1.4 9.1 4.1 2 8.6 0.4 2.7 1 1 1 3 3 1 0 Centrosomin N-terminal motif 1 DivIC PF04977.15 gi|118431313|ref|NP_147686.2| - 1.4 8.7 11.9 0.41 10.4 1.5 3.4 1 1 1 3 3 3 0 Septum formation initiator DegS PF05384.11 gi|118431313|ref|NP_147686.2| - 1.5 8.3 9.0 39 3.7 9.0 2.1 1 1 0 1 1 1 0 Sensor protein DegS HSCB_C PF07743.13 gi|118431313|ref|NP_147686.2| - 1.5 9.3 11.2 0.16 12.5 0.4 3.0 2 1 1 3 3 2 0 HSCB C-terminal oligomerisation domain Helo_like_N PF17111.5 gi|118431313|ref|NP_147686.2| - 1.6 8.1 3.9 5.6 6.3 2.2 2.4 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins DUF2203 PF09969.9 gi|118431313|ref|NP_147686.2| - 1.7 9.4 5.2 32 5.3 5.2 2.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) FadA PF09403.10 gi|118431313|ref|NP_147686.2| - 1.7 9.2 4.8 2.9 8.4 2.3 2.2 1 1 1 2 2 2 0 Adhesion protein FadA UPF0184 PF03670.13 gi|118431313|ref|NP_147686.2| - 1.7 9.1 7.5 25 5.3 2.0 3.4 1 1 3 4 4 3 0 Uncharacterised protein family (UPF0184) Dor1 PF04124.12 gi|118431313|ref|NP_147686.2| - 1.8 7.2 6.9 6.3 5.4 3.2 2.4 1 1 1 2 2 2 0 Dor1-like family LPP PF04728.13 gi|118431313|ref|NP_147686.2| - 1.9 8.9 8.6 43 4.6 1.8 3.8 1 1 2 3 3 3 0 Lipoprotein leucine-zipper Med9 PF07544.13 gi|118431313|ref|NP_147686.2| - 2.2 8.5 5.9 16 5.7 0.1 2.6 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DivIVA PF05103.13 gi|118431313|ref|NP_147686.2| - 2.2 8.4 6.7 2.1 8.4 1.5 2.7 1 1 2 3 3 2 0 DivIVA protein DUF724 PF05266.14 gi|118431313|ref|NP_147686.2| - 2.2 8.1 3.5 3.6 7.4 1.9 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF724) HalX PF08663.10 gi|118431313|ref|NP_147686.2| - 2.4 8.5 21.5 12 6.3 1.1 4.6 2 1 2 4 4 3 0 HalX domain BMFP PF04380.13 gi|118431313|ref|NP_147686.2| - 2.5 8.6 13.7 1.7 9.2 4.6 3.2 2 1 0 2 2 2 0 Membrane fusogenic activity HisKA_3 PF07730.13 gi|118431313|ref|NP_147686.2| - 2.6 8.6 8.2 35 5.0 5.3 2.6 2 1 0 2 2 2 0 Histidine kinase FTA4 PF13093.6 gi|118431313|ref|NP_147686.2| - 2.8 7.8 6.9 1.3e+02 2.4 6.9 2.6 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DASH_Spc19 PF08287.11 gi|118431313|ref|NP_147686.2| - 3.2 7.6 7.9 1.4 8.8 2.9 2.2 1 1 1 2 2 2 0 Spc19 Dynactin_p22 PF07426.11 gi|118431313|ref|NP_147686.2| - 3.3 7.5 7.1 1.4e+02 2.3 7.1 3.0 1 1 0 1 1 1 0 Dynactin subunit p22 FAM184 PF15665.5 gi|118431313|ref|NP_147686.2| - 3.6 7.3 8.2 7.3 6.3 8.2 1.5 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B DUF2205 PF10224.9 gi|118431313|ref|NP_147686.2| - 4.1 7.5 12.4 1 9.4 1.8 3.6 2 2 2 4 4 4 0 Short coiled-coil protein Golgin_A5 PF09787.9 gi|118431313|ref|NP_147686.2| - 4.7 6.6 8.3 11 5.4 8.3 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 THOC7 PF05615.13 gi|118431313|ref|NP_147686.2| - 5.4 7.3 8.0 23 5.3 7.2 2.1 1 1 0 1 1 1 0 Tho complex subunit 7 Cortex-I_coil PF09304.10 gi|118431313|ref|NP_147686.2| - 6 7.1 10.6 8.4 6.7 7.9 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil Sec2p PF06428.11 gi|118431313|ref|NP_147686.2| - 8.3 6.5 7.1 21 5.2 0.9 2.8 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p TMF_DNA_bd PF12329.8 gi|118431313|ref|NP_147686.2| - 9.6 6.3 8.9 2.6 8.1 2.7 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Plasmid_RAQPRD PF09686.10 gi|118431313|ref|NP_147686.2| - 9.9 6.5 8.3 38 4.6 5.4 3.0 1 1 1 2 2 2 0 Plasmid protein of unknown function (Plasmid_RAQPRD) FecCD PF01032.18 gi|118431314|ref|NP_147689.2| - 2.3e-65 220.6 37.4 2.8e-65 220.4 37.4 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|118431314|ref|NP_147689.2| - 0.037 13.5 16.4 0.059 12.9 16.4 1.5 1 1 0 1 1 1 0 ABC 3 transport family Colicin PF01024.19 gi|118431314|ref|NP_147689.2| - 3.2 7.6 10.4 0.24 11.3 1.7 2.5 2 0 0 2 2 2 0 Colicin pore forming domain ABC_tran PF00005.27 gi|118431315|ref|NP_147690.2| - 2e-24 86.6 0.0 2.5e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431315|ref|NP_147690.2| - 3e-18 66.7 0.8 4.7e-11 43.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431315|ref|NP_147690.2| - 2e-07 30.7 0.0 0.00067 19.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|118431315|ref|NP_147690.2| - 0.00063 20.3 0.0 0.0009 19.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431315|ref|NP_147690.2| - 0.00076 19.9 0.1 0.0021 18.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|118431315|ref|NP_147690.2| - 0.0016 18.1 0.1 0.0032 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|118431315|ref|NP_147690.2| - 0.0033 17.2 0.0 0.0043 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|118431315|ref|NP_147690.2| - 0.0096 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 gi|118431315|ref|NP_147690.2| - 0.011 15.3 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|118431315|ref|NP_147690.2| - 0.015 12.8 0.0 0.019 12.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|118431315|ref|NP_147690.2| - 0.02 15.1 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|118431315|ref|NP_147690.2| - 0.026 14.8 0.0 0.066 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|118431315|ref|NP_147690.2| - 0.032 13.9 0.0 0.067 12.9 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|118431315|ref|NP_147690.2| - 0.033 14.4 0.1 0.057 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|118431315|ref|NP_147690.2| - 0.05 13.6 0.1 0.085 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|118431315|ref|NP_147690.2| - 0.052 14.0 0.0 0.12 12.8 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|118431315|ref|NP_147690.2| - 0.071 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DLIC PF05783.11 gi|118431315|ref|NP_147690.2| - 0.1 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|118431315|ref|NP_147690.2| - 0.15 12.6 0.1 0.24 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|118431315|ref|NP_147690.2| - 0.26 11.2 0.0 0.49 10.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|118431315|ref|NP_147690.2| - 0.32 9.6 0.0 0.42 9.2 0.0 1.0 1 0 0 1 1 1 0 AAA domain AMMECR1 PF01871.17 gi|118431316|ref|NP_147691.2| - 7.3e-48 162.3 0.0 1.6e-47 161.2 0.0 1.5 2 0 0 2 2 2 1 AMMECR1 DUF454 PF04304.13 gi|118431316|ref|NP_147691.2| - 0.018 15.0 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF454) Wyosine_form PF08608.12 gi|14601163|ref|NP_147692.1| - 7e-20 71.1 0.0 1.2e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|14601163|ref|NP_147692.1| - 2.3e-16 60.6 0.0 3.9e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Pyr_redox_2 PF07992.14 gi|118431317|ref|NP_147693.2| - 4.2e-50 170.6 0.3 4.9e-50 170.4 0.3 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|118431317|ref|NP_147693.2| - 1.6e-23 83.4 0.0 2.1e-18 66.6 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|118431317|ref|NP_147693.2| - 1.3e-14 54.5 2.4 4.9e-12 46.2 0.4 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|118431317|ref|NP_147693.2| - 4.1e-07 29.5 9.2 0.017 14.2 0.1 4.6 3 1 2 5 5 5 2 FAD binding domain HI0933_like PF03486.14 gi|118431317|ref|NP_147693.2| - 4.8e-07 28.8 0.9 0.026 13.2 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|118431317|ref|NP_147693.2| - 3.5e-06 26.4 3.5 0.038 13.1 0.2 3.9 3 1 1 4 4 4 2 Glucose inhibited division protein A DAO PF01266.24 gi|118431317|ref|NP_147693.2| - 6.8e-05 22.6 7.7 0.0096 15.5 0.0 3.0 1 1 1 3 3 3 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|118431317|ref|NP_147693.2| - 8.5e-05 21.8 0.1 0.095 11.8 0.0 3.0 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|118431317|ref|NP_147693.2| - 0.00023 20.5 0.6 0.0064 15.8 0.1 2.7 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|118431317|ref|NP_147693.2| - 0.002 17.4 0.9 0.058 12.6 0.1 2.4 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 gi|118431317|ref|NP_147693.2| - 0.021 14.8 0.7 6.1 6.8 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|118431317|ref|NP_147693.2| - 0.13 11.6 7.6 0.09 12.1 0.5 3.0 3 1 0 3 3 3 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|118431317|ref|NP_147693.2| - 0.14 11.2 0.1 0.14 11.2 0.1 1.9 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|118431317|ref|NP_147693.2| - 0.31 11.3 0.2 0.31 11.3 0.2 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain HTH_23 PF13384.6 gi|14601165|ref|NP_147694.1| - 0.02 14.7 0.5 0.043 13.6 0.5 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|14601165|ref|NP_147694.1| - 0.025 14.6 1.9 0.041 13.9 0.4 2.0 2 0 0 2 2 2 0 Winged helix-turn helix Ribonuc_red_lgN PF00317.21 gi|14601165|ref|NP_147694.1| - 0.05 13.6 0.1 0.075 13.0 0.1 1.4 1 0 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain HTH_11 PF08279.12 gi|14601165|ref|NP_147694.1| - 0.052 13.5 0.4 0.085 12.8 0.4 1.3 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|14601165|ref|NP_147694.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4687 PF15747.5 gi|14601166|ref|NP_147695.1| - 0.25 11.8 1.3 14 6.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4687) ATP-grasp_2 PF08442.10 gi|118431318|ref|NP_147696.2| - 1.8e-50 171.3 0.0 2.6e-50 170.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|118431318|ref|NP_147696.2| - 2.3e-14 53.5 0.0 4.6e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|118431318|ref|NP_147696.2| - 4.2e-05 23.1 0.3 0.0017 17.9 0.0 2.4 2 1 0 2 2 2 1 ATP-grasp domain CoA_binding PF02629.19 gi|118431319|ref|NP_147697.2| - 7.2e-32 109.9 1.8 9.2e-32 109.6 0.4 1.9 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|118431319|ref|NP_147697.2| - 3e-19 69.4 0.1 5.1e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|118431319|ref|NP_147697.2| - 4.8e-15 55.6 0.0 4.4e-14 52.5 0.0 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|118431319|ref|NP_147697.2| - 7.1e-11 42.6 0.2 1.5e-10 41.6 0.1 1.6 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|118431319|ref|NP_147697.2| - 0.0043 17.9 0.1 0.011 16.5 0.1 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF5130 PF17174.4 gi|118431319|ref|NP_147697.2| - 0.11 12.7 0.1 21 5.3 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF5130) ERCC3_RAD25_C PF16203.5 gi|14601169|ref|NP_147698.1| - 3.8e-22 78.7 0.0 6.4e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|14601169|ref|NP_147698.1| - 2.7e-21 76.3 0.0 4.8e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|14601169|ref|NP_147698.1| - 9.6e-16 58.1 0.0 1.9e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|14601169|ref|NP_147698.1| - 4.9e-07 29.7 0.0 1.2e-06 28.5 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase XPB_DRD PF18458.1 gi|14601169|ref|NP_147698.1| - 1.8e-06 27.7 0.1 5.5e-06 26.2 0.1 1.9 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain AAA_22 PF13401.6 gi|14601169|ref|NP_147698.1| - 0.0037 17.6 0.0 0.031 14.6 0.0 2.6 3 1 0 3 3 3 1 AAA domain SNF2_N PF00176.23 gi|14601169|ref|NP_147698.1| - 0.0037 16.0 0.0 0.033 12.9 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain P2_N PF18628.1 gi|14601169|ref|NP_147698.1| - 0.045 13.5 0.0 0.085 12.6 0.0 1.4 1 0 0 1 1 1 0 Viral coat protein P2 N-terminal domain DUF2863 PF11062.8 gi|14601171|ref|NP_147700.1| - 0.14 10.6 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) HEAT_PBS PF03130.16 gi|14601171|ref|NP_147700.1| - 0.38 11.6 1.5 23 6.1 0.2 2.7 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat Pribosyltran PF00156.27 gi|118431320|ref|NP_147701.2| - 2.1e-06 27.3 0.1 4.3e-06 26.3 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain HTH_IclR PF09339.10 gi|118431320|ref|NP_147701.2| - 0.00089 19.0 0.1 0.0035 17.1 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_3 PF01381.22 gi|118431320|ref|NP_147701.2| - 0.0017 18.4 0.0 0.0032 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|118431320|ref|NP_147701.2| - 0.01 15.4 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPRTase PF14681.6 gi|118431320|ref|NP_147701.2| - 0.019 14.4 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Sigma70_r4 PF04545.16 gi|118431320|ref|NP_147701.2| - 0.078 12.5 0.2 0.2 11.2 0.2 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|118431320|ref|NP_147701.2| - 0.083 12.8 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|118431320|ref|NP_147701.2| - 0.13 12.5 0.0 0.95 9.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain SRP54 PF00448.22 gi|118431321|ref|NP_147702.2| - 7.3e-74 247.7 0.0 9.1e-74 247.3 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|118431321|ref|NP_147702.2| - 5.5e-09 36.1 0.6 1.7e-08 34.5 0.2 2.0 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|118431321|ref|NP_147702.2| - 8.5e-06 25.6 0.7 1.5e-05 24.8 0.7 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431321|ref|NP_147702.2| - 8.9e-05 22.9 0.2 0.00025 21.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|118431321|ref|NP_147702.2| - 0.0008 19.8 0.0 0.0013 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|118431321|ref|NP_147702.2| - 0.0009 18.9 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|118431321|ref|NP_147702.2| - 0.0014 18.9 0.0 0.0029 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|118431321|ref|NP_147702.2| - 0.0022 17.0 4.3 0.0028 16.7 1.5 2.3 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase PF06745.13 gi|118431321|ref|NP_147702.2| - 0.0063 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA PF00004.29 gi|118431321|ref|NP_147702.2| - 0.0093 16.4 0.0 0.018 15.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|118431321|ref|NP_147702.2| - 0.011 15.5 0.4 0.064 13.0 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|118431321|ref|NP_147702.2| - 0.015 15.7 0.1 0.032 14.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|118431321|ref|NP_147702.2| - 0.017 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CbiA PF01656.23 gi|118431321|ref|NP_147702.2| - 0.018 15.1 0.0 0.061 13.4 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 gi|118431321|ref|NP_147702.2| - 0.03 14.6 0.1 0.18 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|118431321|ref|NP_147702.2| - 0.045 13.9 0.1 0.088 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|118431321|ref|NP_147702.2| - 0.052 13.5 1.7 0.3 11.0 0.3 2.3 1 1 0 2 2 2 0 NTPase Zeta_toxin PF06414.12 gi|118431321|ref|NP_147702.2| - 0.062 12.6 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TPP_enzyme_M PF00205.22 gi|118431321|ref|NP_147702.2| - 0.093 12.5 0.3 1.1 9.0 0.1 2.7 4 0 0 4 4 4 0 Thiamine pyrophosphate enzyme, central domain Thymidylate_kin PF02223.17 gi|118431321|ref|NP_147702.2| - 0.15 11.7 0.1 0.85 9.3 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase AAA_7 PF12775.7 gi|118431321|ref|NP_147702.2| - 0.22 11.0 0.0 0.34 10.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Prefoldin PF02996.17 gi|118431322|ref|NP_147703.2| - 3.7e-23 81.7 1.5 4.9e-23 81.3 1.5 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|118431322|ref|NP_147703.2| - 0.0033 17.3 7.9 0.15 12.0 0.6 2.2 2 0 0 2 2 2 2 Prefoldin subunit PI3K_P85_iSH2 PF16454.5 gi|118431322|ref|NP_147703.2| - 0.0068 16.0 2.8 0.096 12.3 0.9 2.1 2 0 0 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain CENP-F_leu_zip PF10473.9 gi|118431322|ref|NP_147703.2| - 0.0087 16.1 6.4 0.15 12.0 0.2 2.1 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CCDC-167 PF15188.6 gi|118431322|ref|NP_147703.2| - 0.013 15.9 4.6 0.033 14.5 4.6 1.6 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 BAR PF03114.18 gi|118431322|ref|NP_147703.2| - 0.015 14.9 3.1 0.073 12.7 3.0 1.9 1 1 0 1 1 1 0 BAR domain vATP-synt_E PF01991.18 gi|118431322|ref|NP_147703.2| - 0.015 14.7 1.8 0.015 14.7 1.8 1.9 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit Fib_alpha PF08702.10 gi|118431322|ref|NP_147703.2| - 0.018 15.2 4.0 0.098 12.8 1.7 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Takusan PF04822.13 gi|118431322|ref|NP_147703.2| - 0.031 14.2 2.7 0.8 9.6 0.4 2.2 2 0 0 2 2 2 0 Takusan Syntaxin-6_N PF09177.11 gi|118431322|ref|NP_147703.2| - 0.079 13.5 1.3 2.7 8.6 0.2 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal MtrB PF05440.12 gi|118431322|ref|NP_147703.2| - 0.084 13.3 0.1 2.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B HHH_6 PF14579.6 gi|118431322|ref|NP_147703.2| - 0.088 13.1 0.1 0.11 12.7 0.1 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif Nsp1_C PF05064.13 gi|118431322|ref|NP_147703.2| - 0.1 12.4 6.9 0.31 10.8 0.4 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Med9 PF07544.13 gi|118431322|ref|NP_147703.2| - 0.11 12.6 5.5 0.96 9.6 0.2 2.4 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF4715 PF15835.5 gi|118431322|ref|NP_147703.2| - 0.12 12.5 0.3 0.12 12.5 0.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4715) CK2S PF15011.6 gi|118431322|ref|NP_147703.2| - 0.13 12.1 5.2 3.4 7.5 0.1 2.1 2 0 0 2 2 2 0 Casein Kinase 2 substrate CdvA PF18822.1 gi|118431322|ref|NP_147703.2| - 0.16 11.8 5.8 1.9 8.3 0.2 2.3 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Spc24 PF08286.11 gi|118431322|ref|NP_147703.2| - 0.17 12.1 7.8 2.9 8.2 2.6 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 EIAV_Rev PF11129.8 gi|118431322|ref|NP_147703.2| - 0.18 12.0 1.6 0.33 11.2 0.2 1.8 2 0 0 2 2 2 0 Rev protein of equine infectious anaemia virus Snapin_Pallidin PF14712.6 gi|118431322|ref|NP_147703.2| - 0.24 11.9 7.5 1.7 9.1 1.7 2.3 2 0 0 2 2 2 0 Snapin/Pallidin ThrE PF06738.12 gi|118431322|ref|NP_147703.2| - 0.26 10.6 0.4 0.49 9.7 0.1 1.5 2 0 0 2 2 2 0 Putative threonine/serine exporter APG6_N PF17675.1 gi|118431322|ref|NP_147703.2| - 0.27 11.7 9.9 0.19 12.3 1.8 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region TRPM_tetra PF16519.5 gi|118431322|ref|NP_147703.2| - 0.33 11.1 6.4 1.3 9.2 1.5 2.2 2 0 0 2 2 2 0 Tetramerisation domain of TRPM DUF5320 PF17253.2 gi|118431322|ref|NP_147703.2| - 0.47 11.6 2.8 1.7 9.8 0.2 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) DUF1664 PF07889.12 gi|118431322|ref|NP_147703.2| - 0.66 10.0 3.5 7.5 6.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) V-SNARE PF05008.15 gi|118431322|ref|NP_147703.2| - 1.3 9.5 12.0 0.22 11.9 2.2 2.6 3 0 0 3 3 2 0 Vesicle transport v-SNARE protein N-terminus Cortex-I_coil PF09304.10 gi|118431322|ref|NP_147703.2| - 1.4 9.2 10.2 1.2 9.4 3.3 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil Cor1 PF04803.12 gi|118431322|ref|NP_147703.2| - 1.7 8.9 8.5 0.44 10.8 5.5 1.5 2 0 0 2 2 1 0 Cor1/Xlr/Xmr conserved region DUF4404 PF14357.6 gi|118431322|ref|NP_147703.2| - 1.8 9.3 8.8 16 6.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) CENP-Q PF13094.6 gi|118431322|ref|NP_147703.2| - 2 8.6 13.4 2.7 8.2 6.3 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit FapA PF03961.13 gi|118431322|ref|NP_147703.2| - 2.4 6.7 6.3 2.8 6.4 2.1 2.0 1 1 0 2 2 2 0 Flagellar Assembly Protein A THOC7 PF05615.13 gi|118431322|ref|NP_147703.2| - 3.1 8.1 9.1 1.3 9.3 0.6 2.3 2 0 0 2 2 2 0 Tho complex subunit 7 DUF4140 PF13600.6 gi|118431322|ref|NP_147703.2| - 3.3 8.2 10.1 4 7.9 1.1 2.5 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HAUS-augmin3 PF14932.6 gi|118431322|ref|NP_147703.2| - 5.8 6.4 13.7 4.5 6.8 7.3 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Ribosomal_L18A PF01775.17 gi|118431323|ref|YP_874872.1| - 4.8e-13 49.3 0.4 1.1e-12 48.1 0.4 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|14601175|ref|NP_147705.1| - 1e-67 227.4 0.8 1.2e-67 227.1 0.8 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|118431324|ref|NP_147706.2| - 4.1e-18 65.4 0.3 5.2e-18 65.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|118431325|ref|YP_874873.1| - 4.6e-19 67.8 11.0 5.6e-19 67.5 11.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.20 gi|118431326|ref|YP_874874.1| - 3.7e-22 78.7 12.5 4.2e-22 78.5 12.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|118431326|ref|YP_874874.1| - 1.2e-05 24.7 7.9 1.5e-05 24.5 7.9 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 NINJA_B PF16136.5 gi|118431326|ref|YP_874874.1| - 0.026 14.9 7.5 0.036 14.5 7.5 1.2 1 0 0 1 1 1 0 Putative nuclear localisation signal MAS20 PF02064.15 gi|118431326|ref|YP_874874.1| - 0.37 10.9 3.2 0.52 10.4 3.2 1.1 1 0 0 1 1 1 0 MAS20 protein import receptor DUF4192 PF13830.6 gi|118431326|ref|YP_874874.1| - 8.3 6.4 10.6 9.8 6.1 10.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) Casc1_N PF15927.5 gi|118431326|ref|YP_874874.1| - 8.8 6.0 15.9 11 5.6 15.9 1.2 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 N-terminus Ribosomal_S19e PF01090.19 gi|14601178|ref|NP_147710.1| - 1.4e-52 177.1 0.0 1.5e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|14601178|ref|NP_147710.1| - 0.099 12.6 0.4 1.4 8.9 0.0 2.6 4 0 0 4 4 4 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|14601178|ref|NP_147710.1| - 0.11 12.4 0.2 1 9.3 0.0 2.4 1 1 1 2 2 2 0 MarR family DUF4788 PF16032.5 gi|14601178|ref|NP_147710.1| - 0.22 10.5 0.0 0.3 10.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4788) CRS1_YhbY PF01985.21 gi|14601179|ref|NP_147711.1| - 4.3e-15 55.6 1.8 5.5e-15 55.3 1.8 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain CCDC85 PF10226.9 gi|14601179|ref|NP_147711.1| - 0.15 11.7 3.0 0.19 11.4 3.0 1.1 1 0 0 1 1 1 0 CCDC85 family Rpr2 PF04032.16 gi|118431327|ref|NP_147712.2| - 5.3e-13 49.1 0.0 7.4e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|118431327|ref|NP_147712.2| - 0.047 13.7 0.1 0.093 12.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|118431327|ref|NP_147712.2| - 0.2 11.6 3.3 6.2 6.8 0.4 2.6 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_A_M PF01068.21 gi|118431328|ref|NP_147713.2| - 3e-62 209.9 0.1 6.9e-62 208.7 0.0 1.6 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|118431328|ref|NP_147713.2| - 2.8e-37 128.7 0.0 4.3e-37 128.1 0.0 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|118431328|ref|NP_147713.2| - 3.5e-26 91.7 0.0 8.6e-26 90.4 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|118431328|ref|NP_147713.2| - 0.00022 21.6 0.1 0.00034 20.9 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|118431328|ref|NP_147713.2| - 0.13 12.3 1.1 4.3 7.4 0.0 3.0 3 0 0 3 3 3 0 DNA ligase OB-like domain Methyltr_RsmB-F PF01189.17 gi|14601183|ref|NP_147715.1| - 9e-30 103.8 0.0 1.4e-29 103.1 0.0 1.3 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|14601183|ref|NP_147715.1| - 1.7e-17 63.1 1.7 3.3e-17 62.2 1.7 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_24 PF13578.6 gi|14601183|ref|NP_147715.1| - 0.07 14.2 0.0 0.75 10.8 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|14601183|ref|NP_147715.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|14601183|ref|NP_147715.1| - 0.13 11.4 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin UPF0113 PF03657.13 gi|14601183|ref|NP_147715.1| - 0.18 12.1 0.0 0.63 10.3 0.0 1.8 2 0 0 2 2 2 0 UPF0113 PUA domain PIN_6 PF17146.4 gi|14601184|ref|NP_147716.1| - 4.7e-18 65.5 0.0 6.1e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|14601184|ref|NP_147716.1| - 0.0022 17.5 1.2 0.0029 17.1 1.1 1.3 1 1 0 1 1 1 1 PINc domain ribonuclease PIN PF01850.21 gi|14601184|ref|NP_147716.1| - 0.0086 16.6 0.1 0.019 15.5 0.1 1.6 1 1 0 1 1 1 1 PIN domain GHMP_kinases_C PF08544.13 gi|14601184|ref|NP_147716.1| - 0.02 15.3 0.1 0.042 14.2 0.1 1.5 1 0 0 1 1 1 0 GHMP kinases C terminal NAD_kinase PF01513.21 gi|118431329|ref|NP_147717.2| - 1.6e-36 126.0 0.3 9.1e-35 120.3 0.2 2.1 2 0 0 2 2 2 2 ATP-NAD kinase DAGK_cat PF00781.24 gi|118431329|ref|NP_147717.2| - 0.039 13.6 0.0 0.086 12.5 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Met_10 PF02475.16 gi|118431330|ref|NP_147718.2| - 1.6e-37 129.2 0.0 2e-37 128.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|118431330|ref|NP_147718.2| - 1.1e-08 34.8 0.0 1.9e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|118431330|ref|NP_147718.2| - 8e-05 22.2 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|118431330|ref|NP_147718.2| - 9.5e-05 23.0 0.0 0.00018 22.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|118431330|ref|NP_147718.2| - 0.00071 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|118431330|ref|NP_147718.2| - 0.0014 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|118431330|ref|NP_147718.2| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|118431330|ref|NP_147718.2| - 0.014 15.0 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F EF_assoc_2 PF08356.12 gi|118431330|ref|NP_147718.2| - 0.057 13.4 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 EF hand associated Methyltrans_SAM PF10672.9 gi|118431330|ref|NP_147718.2| - 0.068 12.3 0.1 0.099 11.8 0.1 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase DNA_methylase PF00145.17 gi|118431330|ref|NP_147718.2| - 0.074 12.4 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase FBPase_3 PF01950.16 gi|118431331|ref|NP_147719.2| - 6.2e-189 627.7 0.0 7.2e-189 627.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Peptidase_M24 PF00557.24 gi|118431332|ref|NP_147721.2| - 9.1e-35 120.2 0.2 1e-34 120.1 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.6 gi|14601190|ref|NP_147722.1| - 1.1e-24 87.1 0.3 1.2e-23 83.8 0.4 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|14601190|ref|NP_147722.1| - 1.9e-23 83.0 0.2 2.7e-23 82.6 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|14601190|ref|NP_147722.1| - 7.7e-15 55.4 3.3 9.7e-15 55.1 3.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|14601190|ref|NP_147722.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain ABC_tran PF00005.27 gi|118431333|ref|NP_147723.2| - 1e-38 132.9 0.0 2.5e-18 66.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|118431333|ref|NP_147723.2| - 2.8e-15 56.9 2.1 0.0093 15.8 0.0 4.1 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|118431333|ref|NP_147723.2| - 1.1e-13 50.7 1.6 2.9e-13 49.4 1.6 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|118431333|ref|NP_147723.2| - 7.5e-11 41.9 0.6 0.016 14.7 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.7 gi|118431333|ref|NP_147723.2| - 1.4e-08 34.4 14.1 6e-05 22.9 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|118431333|ref|NP_147723.2| - 1.2e-07 31.3 5.7 1.2e-07 31.3 5.7 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|118431333|ref|NP_147723.2| - 5.7e-07 29.6 9.3 6.6e-05 23.0 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA PF00004.29 gi|118431333|ref|NP_147723.2| - 1.6e-06 28.5 0.0 0.039 14.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|118431333|ref|NP_147723.2| - 2.7e-05 24.6 1.6 0.072 13.5 0.2 3.1 3 1 0 3 3 3 2 AAA ATPase domain SbcCD_C PF13558.6 gi|118431333|ref|NP_147723.2| - 4.7e-05 23.5 0.0 0.42 10.9 0.0 2.7 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|118431333|ref|NP_147723.2| - 4.8e-05 23.6 1.1 0.18 12.0 0.1 3.9 2 2 0 2 2 2 1 AAA domain Fer4_21 PF14697.6 gi|118431333|ref|NP_147723.2| - 5.9e-05 23.1 10.1 0.00012 22.1 10.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain NACHT PF05729.12 gi|118431333|ref|NP_147723.2| - 0.00012 22.0 0.6 0.1 12.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|118431333|ref|NP_147723.2| - 0.00016 22.0 0.9 0.97 9.7 0.0 3.8 3 1 0 3 3 3 1 AAA domain Fer4_2 PF12797.7 gi|118431333|ref|NP_147723.2| - 0.00037 20.4 2.4 0.00037 20.4 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_23 PF13476.6 gi|118431333|ref|NP_147723.2| - 0.00041 20.9 0.2 1.1 9.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_7 PF12838.7 gi|118431333|ref|NP_147723.2| - 0.00042 20.8 10.5 0.00074 20.1 1.3 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|118431333|ref|NP_147723.2| - 0.00068 19.7 8.0 0.0012 18.9 8.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|118431333|ref|NP_147723.2| - 0.00075 19.3 0.7 0.12 12.1 0.1 2.3 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|118431333|ref|NP_147723.2| - 0.001 19.0 0.4 0.34 10.9 0.1 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|118431333|ref|NP_147723.2| - 0.0012 18.6 3.4 0.35 10.6 0.0 3.3 3 1 0 3 3 3 1 AAA domain Fer4_16 PF13484.6 gi|118431333|ref|NP_147723.2| - 0.0015 19.4 4.0 0.033 15.1 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_18 PF13238.6 gi|118431333|ref|NP_147723.2| - 0.0026 18.3 0.0 4.2 7.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|118431333|ref|NP_147723.2| - 0.0041 17.1 2.8 0.26 11.2 0.0 3.1 3 0 0 3 3 3 1 NTPase RNA_helicase PF00910.22 gi|118431333|ref|NP_147723.2| - 0.0043 17.4 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_29 PF13555.6 gi|118431333|ref|NP_147723.2| - 0.005 16.5 0.4 2.4 8.0 0.0 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|118431333|ref|NP_147723.2| - 0.0061 16.6 0.0 0.83 9.7 0.0 2.9 3 0 0 3 3 2 1 AAA domain RsgA_GTPase PF03193.16 gi|118431333|ref|NP_147723.2| - 0.0078 16.1 0.1 3.4 7.6 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase Fer4_3 PF12798.7 gi|118431333|ref|NP_147723.2| - 0.0081 17.0 4.5 0.0081 17.0 4.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|118431333|ref|NP_147723.2| - 0.0084 16.1 0.0 4.2 7.2 0.0 2.7 3 0 0 3 3 2 0 Rad17 P-loop domain Thymidylate_kin PF02223.17 gi|118431333|ref|NP_147723.2| - 0.0093 15.7 0.0 5.9 6.5 0.0 2.8 3 0 0 3 3 2 0 Thymidylate kinase NB-ARC PF00931.22 gi|118431333|ref|NP_147723.2| - 0.012 14.8 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|118431333|ref|NP_147723.2| - 0.012 15.4 0.0 0.15 11.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family SRP54 PF00448.22 gi|118431333|ref|NP_147723.2| - 0.012 15.2 2.8 1.8 8.2 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|118431333|ref|NP_147723.2| - 0.013 15.8 0.3 11 6.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.7 gi|118431333|ref|NP_147723.2| - 0.016 15.7 2.5 0.016 15.7 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_5 PF07728.14 gi|118431333|ref|NP_147723.2| - 0.021 14.8 1.6 3.4 7.7 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|118431333|ref|NP_147723.2| - 0.03 14.4 1.6 12 6.0 0.0 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase MobB PF03205.14 gi|118431333|ref|NP_147723.2| - 0.053 13.4 0.5 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_8 PF13183.6 gi|118431333|ref|NP_147723.2| - 0.082 13.4 3.8 0.098 13.1 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|118431333|ref|NP_147723.2| - 0.11 12.2 0.0 4.5 6.9 0.0 2.4 3 0 0 3 3 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|118431333|ref|NP_147723.2| - 0.21 11.4 0.0 0.85 9.5 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|118431333|ref|NP_147723.2| - 0.31 10.6 6.1 3.1 7.3 1.5 3.1 3 1 0 3 3 2 0 AAA domain AAA_19 PF13245.6 gi|118431333|ref|NP_147723.2| - 0.4 11.0 2.8 21 5.4 0.1 2.8 3 0 0 3 3 2 0 AAA domain Fer4_17 PF13534.6 gi|118431333|ref|NP_147723.2| - 0.45 11.1 7.8 0.31 11.6 1.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ATPase PF06745.13 gi|118431333|ref|NP_147723.2| - 0.59 9.4 2.6 7.9 5.7 0.3 2.7 3 0 0 3 3 3 0 KaiC AFP PF02420.15 gi|118431333|ref|NP_147723.2| - 3.2 8.4 4.2 6.5 7.4 4.2 1.5 1 0 0 1 1 1 0 Insect antifreeze protein repeat DUF1512 PF07431.12 gi|118431334|ref|NP_147725.2| - 3.8e-144 480.1 4.4 4.4e-144 479.9 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) tRNA-synt_1g PF09334.11 gi|14601199|ref|NP_147731.1| - 2.6e-154 513.7 0.0 3e-154 513.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|14601199|ref|NP_147731.1| - 3e-14 52.2 0.0 9.4e-08 30.8 0.1 3.3 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|14601199|ref|NP_147731.1| - 5e-09 36.3 0.0 8.5e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|14601199|ref|NP_147731.1| - 0.0024 17.3 0.0 0.072 12.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain TerY_C PF15616.6 gi|14601199|ref|NP_147731.1| - 0.04 14.0 0.3 0.066 13.3 0.3 1.4 1 0 0 1 1 1 0 TerY-C metal binding domain tRNA-synt_1f PF01921.18 gi|14601199|ref|NP_147731.1| - 0.097 11.6 0.0 1.4 7.8 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|14601199|ref|NP_147731.1| - 0.36 10.9 5.7 0.5 10.4 5.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.12 gi|14601199|ref|NP_147731.1| - 1.6 9.1 3.8 0.55 10.6 1.0 1.7 2 0 0 2 2 1 0 Drought induced 19 protein (Di19), zinc-binding RNA_POL_M_15KD PF02150.16 gi|14601199|ref|NP_147731.1| - 1.7 8.5 4.8 7.5 6.5 2.3 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-RING_7 PF02591.15 gi|14601199|ref|NP_147731.1| - 4.3 7.6 7.0 2.6 8.3 0.3 2.8 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|14601199|ref|NP_147731.1| - 9.6 6.3 8.1 14 5.8 2.2 2.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|14601199|ref|NP_147731.1| - 9.7 6.9 7.9 17 6.1 0.3 3.1 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S24e PF01282.19 gi|118431335|ref|NP_147732.2| - 2.4e-19 69.1 0.0 3.2e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|118431336|ref|YP_874875.1| - 1.7e-14 53.7 3.4 2.2e-14 53.3 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|118431336|ref|YP_874875.1| - 4.1e-05 23.5 3.1 5.4e-05 23.1 3.1 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|118431336|ref|YP_874875.1| - 0.0004 20.3 0.7 0.00046 20.1 0.7 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|118431336|ref|YP_874875.1| - 0.012 15.3 0.3 0.012 15.3 0.3 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 RNA_POL_M_15KD PF02150.16 gi|118431336|ref|YP_874875.1| - 0.016 15.1 0.3 0.036 13.9 0.3 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_ribbon_SprT PF17283.2 gi|118431336|ref|YP_874875.1| - 0.024 14.6 2.8 0.043 13.7 2.8 1.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-piccolo PF05715.13 gi|118431336|ref|YP_874875.1| - 0.03 14.5 0.1 0.03 14.5 0.1 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger GFA PF04828.14 gi|118431336|ref|YP_874875.1| - 0.031 14.6 1.5 2.1 8.8 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HalOD2 PF18547.1 gi|118431336|ref|YP_874875.1| - 0.046 13.6 1.7 1.9 8.4 0.5 2.2 2 0 0 2 2 2 0 Halobacterial output domain 2 zf-NADH-PPase PF09297.11 gi|118431336|ref|YP_874875.1| - 0.055 13.1 5.4 0.21 11.2 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.10 gi|118431336|ref|YP_874875.1| - 0.066 13.4 2.0 0.096 12.9 1.2 1.6 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) DUF1451 PF07295.11 gi|118431336|ref|YP_874875.1| - 0.083 12.9 0.7 0.083 12.9 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Nudix_N_2 PF14803.6 gi|118431336|ref|YP_874875.1| - 0.092 12.7 3.9 0.43 10.5 3.9 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|118431336|ref|YP_874875.1| - 0.11 12.0 5.9 0.21 11.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|118431336|ref|YP_874875.1| - 0.11 12.7 2.8 0.56 10.4 0.3 2.4 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|118431336|ref|YP_874875.1| - 0.14 12.6 2.8 0.22 11.9 2.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|118431336|ref|YP_874875.1| - 0.22 12.2 6.7 0.66 10.7 0.9 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_UBZ PF18439.1 gi|118431336|ref|YP_874875.1| - 0.24 11.0 2.6 0.55 9.9 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|118431336|ref|YP_874875.1| - 0.48 10.2 5.5 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|118431336|ref|YP_874875.1| - 5.5 6.8 9.4 6.3 6.6 1.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Peptidase_M22 PF00814.25 gi|14601201|ref|NP_147734.1| - 1.1e-70 238.4 0.2 1.4e-70 238.1 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|14601201|ref|NP_147734.1| - 0.0045 16.7 0.0 0.031 14.0 0.0 2.1 3 0 0 3 3 3 1 Carbamoyltransferase N-terminus DUF348 PF03990.14 gi|14601201|ref|NP_147734.1| - 0.015 15.0 0.5 0.046 13.5 0.5 1.9 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain APH PF01636.23 gi|118431337|ref|NP_147735.2| - 4.8e-08 33.2 0.8 0.0007 19.6 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|118431337|ref|NP_147735.2| - 1.3e-06 28.1 0.0 1.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.11 gi|118431337|ref|NP_147735.2| - 0.00028 20.6 0.0 0.00033 20.4 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.25 gi|118431337|ref|NP_147735.2| - 0.0012 18.3 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|118431337|ref|NP_147735.2| - 0.0078 15.6 0.0 0.073 12.4 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Ham1p_like PF01725.16 gi|118431338|ref|NP_147736.2| - 1.1e-47 162.4 0.0 1.3e-47 162.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_S13_N PF08069.12 gi|14601204|ref|NP_147737.1| - 1.3e-23 82.8 0.0 2.6e-23 81.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|14601204|ref|NP_147737.1| - 1.2e-17 63.9 0.1 1.6e-17 63.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 AA_kinase PF00696.28 gi|118431339|ref|NP_147738.2| - 5.3e-43 147.4 0.0 8.7e-43 146.6 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.25 gi|118431339|ref|NP_147738.2| - 3.6e-08 33.1 0.1 1.8e-07 30.8 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|118431339|ref|NP_147738.2| - 2.3e-05 24.1 0.0 0.00024 20.8 0.0 2.5 2 0 0 2 2 2 1 ACT domain Semialdhyde_dhC PF02774.18 gi|14601206|ref|NP_147739.1| - 1.6e-32 113.1 0.0 2.1e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|14601206|ref|NP_147739.1| - 1.9e-26 92.9 0.0 2.9e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Homoserine_dh PF00742.19 gi|118431340|ref|NP_147740.2| - 1.3e-30 106.6 0.0 1.6e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase Ribosomal_S3Ae PF01015.18 gi|118431343|ref|NP_147748.2| - 1.1e-65 221.0 0.0 1.3e-65 220.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ELYS PF13934.6 gi|118431343|ref|NP_147748.2| - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Nuclear pore complex assembly SPOUT_MTase_2 PF14419.6 gi|118431344|ref|NP_147749.2| - 3.5e-79 264.2 0.6 4.9e-79 263.7 0.6 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|118431344|ref|NP_147749.2| - 3.6e-28 98.5 0.0 6.4e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Mtf2_C PF14061.6 gi|118431344|ref|NP_147749.2| - 2.1 8.6 3.9 0.5 10.6 0.4 1.8 2 0 0 2 2 2 0 Polycomb-like MTF2 factor 2 Radical_SAM PF04055.21 gi|118431345|ref|NP_147750.2| - 3.5e-13 50.3 0.0 8.4e-13 49.0 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|118431345|ref|NP_147750.2| - 0.092 12.8 0.0 0.27 11.3 0.0 1.8 1 0 0 1 1 1 0 B12 binding domain GTP-bdg_M PF16360.5 gi|118431345|ref|NP_147750.2| - 0.64 10.7 3.1 28 5.4 0.0 3.2 3 0 0 3 3 3 0 GTP-binding GTPase Middle Region RNase_P_Rpp14 PF01900.19 gi|118431346|ref|NP_147751.2| - 2.6e-10 40.4 0.0 3.2e-10 40.2 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family MMR_HSR1_C PF08438.10 gi|14601219|ref|NP_147752.1| - 1.4e-32 112.6 0.0 2.2e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|14601219|ref|NP_147752.1| - 2.5e-18 66.2 0.0 1.2e-17 64.1 0.0 2.0 1 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|14601219|ref|NP_147752.1| - 4.5e-17 61.9 0.0 8.3e-17 61.0 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|14601219|ref|NP_147752.1| - 2.6e-06 27.0 0.0 0.00022 20.8 0.1 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|14601219|ref|NP_147752.1| - 0.0095 16.1 0.0 0.46 10.7 0.0 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF933) SBDS PF01172.18 gi|118431347|ref|NP_147753.2| - 2.5e-23 82.0 0.0 3.8e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|118431347|ref|NP_147753.2| - 5.5e-18 65.1 0.0 8.4e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain HI0933_like PF03486.14 gi|118431347|ref|NP_147753.2| - 0.0062 15.3 0.0 0.0093 14.7 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Metallophos_2 PF12850.7 gi|118431348|ref|NP_147754.2| - 5.3e-26 91.8 0.0 6.7e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|118431348|ref|NP_147754.2| - 2.9e-14 54.1 1.5 1.4e-13 51.8 1.5 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF1206 PF06724.11 gi|118431349|ref|YP_874877.1| - 0.014 15.5 3.7 0.034 14.2 1.0 2.3 1 1 2 3 3 3 0 Domain of Unknown Function (DUF1206) MnhB PF04039.13 gi|118431349|ref|YP_874877.1| - 0.048 14.0 0.2 0.06 13.7 0.2 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter dTDP_sugar_isom PF00908.17 gi|14601228|ref|NP_147761.1| - 1.9e-61 206.6 0.0 2.2e-61 206.5 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_1 PF00190.22 gi|14601228|ref|NP_147761.1| - 9.6e-05 22.0 0.0 0.00013 21.6 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|14601228|ref|NP_147761.1| - 0.0007 19.3 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Cupin domain RmlD_sub_bind PF04321.17 gi|118431352|ref|NP_147762.2| - 2.6e-86 289.3 0.0 2.9e-86 289.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|118431352|ref|NP_147762.2| - 1.5e-28 99.9 0.0 1.9e-28 99.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|118431352|ref|NP_147762.2| - 5.7e-18 65.4 0.1 1.2e-17 64.3 0.1 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|118431352|ref|NP_147762.2| - 3.1e-13 49.5 0.3 1.3e-08 34.4 0.0 2.7 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|118431352|ref|NP_147762.2| - 7e-13 48.4 0.0 5.5e-11 42.1 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|118431352|ref|NP_147762.2| - 6.5e-09 35.2 0.0 1.1e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|118431352|ref|NP_147762.2| - 0.0015 18.5 0.0 0.0028 17.6 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|118431352|ref|NP_147762.2| - 0.027 14.4 0.2 0.72 9.7 0.2 2.7 3 0 0 3 3 3 0 KR domain NmrA PF05368.13 gi|118431352|ref|NP_147762.2| - 0.047 13.2 0.0 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family adh_short PF00106.25 gi|118431352|ref|NP_147762.2| - 0.054 12.9 0.0 0.13 11.7 0.0 1.6 1 1 0 1 1 1 0 short chain dehydrogenase GDP_Man_Dehyd PF16363.5 gi|14601230|ref|NP_147763.1| - 2.7e-77 260.4 0.0 3.3e-77 260.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|14601230|ref|NP_147763.1| - 1.6e-69 234.0 0.0 2e-69 233.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|14601230|ref|NP_147763.1| - 2.5e-20 72.7 0.0 2.8e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|14601230|ref|NP_147763.1| - 5.2e-20 71.6 0.0 6.4e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|14601230|ref|NP_147763.1| - 6e-16 58.4 0.0 7.1e-15 54.9 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|14601230|ref|NP_147763.1| - 3.2e-13 49.5 0.0 4.6e-12 45.7 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|14601230|ref|NP_147763.1| - 0.0001 21.8 0.0 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|14601230|ref|NP_147763.1| - 0.00095 19.4 0.0 0.0021 18.3 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|14601230|ref|NP_147763.1| - 0.0059 16.5 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 KR domain DapB_N PF01113.20 gi|14601230|ref|NP_147763.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NTP_transferase PF00483.23 gi|14601231|ref|NP_147764.1| - 2.4e-41 142.0 0.0 2.9e-41 141.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|14601231|ref|NP_147764.1| - 1.2e-10 41.9 0.0 1.8e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|14601231|ref|NP_147764.1| - 0.0038 17.0 0.0 0.0061 16.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|14601231|ref|NP_147764.1| - 0.0045 17.3 3.3 0.02 15.2 2.2 2.1 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|14601231|ref|NP_147764.1| - 0.32 10.8 3.1 2.4 8.0 0.1 3.4 2 1 1 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Phosphodiest PF01663.22 gi|14601232|ref|NP_147765.1| - 1.2e-68 232.3 0.0 1.6e-68 231.9 0.0 1.1 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1947 PF09183.10 gi|14601232|ref|NP_147765.1| - 0.4 11.0 2.1 0.53 10.6 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) Methyltransf_11 PF08241.12 gi|14601233|ref|NP_147766.1| - 3.2e-15 56.5 0.0 7.4e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|14601233|ref|NP_147766.1| - 1.7e-08 34.5 0.0 3.1e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|14601233|ref|NP_147766.1| - 9.9e-08 32.6 0.0 4.5e-07 30.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|14601233|ref|NP_147766.1| - 3.2e-07 31.0 0.0 1.2e-06 29.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|14601233|ref|NP_147766.1| - 1.5e-06 28.1 0.0 2.6e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|14601233|ref|NP_147766.1| - 4.7e-06 26.1 0.0 1.2e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|14601233|ref|NP_147766.1| - 2e-05 24.5 0.0 3.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|14601233|ref|NP_147766.1| - 0.0063 15.5 0.0 0.0094 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.16 gi|14601233|ref|NP_147766.1| - 0.095 11.2 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Glycos_transf_2 PF00535.26 gi|14601234|ref|NP_147767.1| - 5.3e-15 55.6 0.1 8.4e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|14601234|ref|NP_147767.1| - 7.4e-09 35.8 0.0 2.8e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Anp1 PF03452.14 gi|14601234|ref|NP_147767.1| - 0.035 13.5 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Anp1 Glyco_trans_2_3 PF13632.6 gi|14601234|ref|NP_147767.1| - 0.063 13.2 0.0 0.082 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.20 gi|118431353|ref|NP_147768.2| - 1.1e-06 28.4 0.2 2.2e-06 27.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|118431353|ref|NP_147768.2| - 0.00097 19.6 0.0 0.0022 18.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|14601237|ref|NP_147770.1| - 6.9e-09 35.5 0.0 1.2e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|14601237|ref|NP_147770.1| - 5.1e-07 30.2 0.0 8.8e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 SAM35 PF10806.8 gi|14601237|ref|NP_147770.1| - 0.033 14.4 0.0 0.079 13.2 0.0 1.6 2 0 0 2 2 2 0 SAM35, subunit of SAM coomplex Glycos_transf_2 PF00535.26 gi|14602202|ref|NP_147771.1| - 1.8e-24 86.4 0.0 3e-24 85.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|14602202|ref|NP_147771.1| - 2.5e-10 40.6 0.0 5.8e-10 39.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|14602202|ref|NP_147771.1| - 4.6e-06 26.3 0.0 9.1e-06 25.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 YflT PF11181.8 gi|14602202|ref|NP_147771.1| - 0.04 14.4 0.1 4.4 7.9 0.1 2.2 2 0 0 2 2 2 0 Heat induced stress protein YflT Glyco_tranf_2_4 PF13704.6 gi|14602202|ref|NP_147771.1| - 0.068 13.7 0.0 0.14 12.7 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 F420_ligase PF01996.16 gi|14602202|ref|NP_147771.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Methyltransf_21 PF05050.12 gi|118431355|ref|NP_147772.2| - 1.8e-14 54.1 0.0 2.3e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|118431355|ref|NP_147772.2| - 0.00012 21.9 0.1 0.00015 21.6 0.1 1.3 1 1 0 1 1 1 1 Met-10+ like-protein MtrB PF05440.12 gi|118431355|ref|NP_147772.2| - 0.056 13.9 0.0 0.16 12.4 0.0 1.7 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Glycos_transf_1 PF00534.20 gi|14601239|ref|NP_147773.1| - 1.6e-42 144.9 0.0 2.3e-42 144.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|14601239|ref|NP_147773.1| - 7.2e-30 104.2 0.0 2e-29 102.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|14601239|ref|NP_147773.1| - 1.5e-27 96.7 1.7 2.7e-27 95.8 1.7 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|14601239|ref|NP_147773.1| - 4e-16 59.8 1.6 8e-16 58.9 1.6 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|14601239|ref|NP_147773.1| - 6.6e-10 39.2 0.0 1.4e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|14601240|ref|NP_147774.1| - 1.3e-10 41.3 0.0 2e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|14601240|ref|NP_147774.1| - 0.00051 20.0 0.0 0.0016 18.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|14601240|ref|NP_147774.1| - 0.012 15.2 0.0 0.31 10.5 0.0 2.3 1 1 1 2 2 2 0 Glycosyl transferase family 21 Phage_holin_3_6 PF07332.11 gi|118431357|ref|NP_147776.2| - 0.0022 18.0 0.1 0.0028 17.7 0.1 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III LMBR1 PF04791.16 gi|118431357|ref|NP_147776.2| - 0.0029 16.6 0.0 0.003 16.5 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein DUF4131 PF13567.6 gi|118431357|ref|NP_147776.2| - 0.01 15.5 0.0 0.012 15.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2254 PF10011.9 gi|118431357|ref|NP_147776.2| - 0.021 13.7 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF2614 PF11023.8 gi|118431357|ref|NP_147776.2| - 0.043 13.9 0.1 0.051 13.7 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain RPN7 PF10602.9 gi|118431357|ref|NP_147776.2| - 0.21 11.3 3.0 0.3 10.8 3.0 1.2 1 0 0 1 1 1 0 26S proteasome subunit RPN7 DUF1673 PF07895.11 gi|118431357|ref|NP_147776.2| - 0.36 10.5 2.1 0.57 9.9 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DPM2 PF07297.12 gi|118431357|ref|NP_147776.2| - 0.98 9.8 7.6 90 3.5 7.6 2.1 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) APS_kinase PF01583.20 gi|118431358|ref|NP_147777.2| - 4.1e-59 199.0 0.0 4.7e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.10 gi|118431358|ref|NP_147777.2| - 2.8e-11 43.4 0.0 3.2e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|118431358|ref|NP_147777.2| - 4.1e-11 43.2 0.0 4.9e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|118431358|ref|NP_147777.2| - 2.2e-07 31.4 0.0 3.1e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|118431358|ref|NP_147777.2| - 6.8e-07 29.4 0.0 9.8e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|118431358|ref|NP_147777.2| - 6.9e-06 25.2 0.0 9.6e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|118431358|ref|NP_147777.2| - 9.2e-06 25.5 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|118431358|ref|NP_147777.2| - 1.2e-05 25.1 0.0 2.5e-05 24.0 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|118431358|ref|NP_147777.2| - 2.2e-05 24.4 0.2 5.3e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.6 gi|118431358|ref|NP_147777.2| - 0.00014 22.2 0.2 0.00043 20.6 0.1 1.7 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|118431358|ref|NP_147777.2| - 0.00022 20.8 0.0 0.00026 20.5 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 gi|118431358|ref|NP_147777.2| - 0.0003 21.2 0.0 0.00035 21.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 gi|118431358|ref|NP_147777.2| - 0.0003 21.2 0.0 0.00058 20.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|118431358|ref|NP_147777.2| - 0.00039 20.1 0.0 0.00054 19.6 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|118431358|ref|NP_147777.2| - 0.00058 19.8 0.1 0.0013 18.7 0.1 1.6 2 0 0 2 2 1 1 NACHT domain AAA_31 PF13614.6 gi|118431358|ref|NP_147777.2| - 0.00085 19.3 0.0 0.001 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|118431358|ref|NP_147777.2| - 0.00091 19.1 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|118431358|ref|NP_147777.2| - 0.0011 19.0 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|118431358|ref|NP_147777.2| - 0.0018 17.6 0.0 0.0029 16.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|118431358|ref|NP_147777.2| - 0.0031 17.8 0.0 0.0051 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|118431358|ref|NP_147777.2| - 0.0035 16.7 0.0 0.0073 15.6 0.0 1.7 1 1 0 1 1 1 1 6-phosphofructo-2-kinase SKI PF01202.22 gi|118431358|ref|NP_147777.2| - 0.0043 17.2 0.5 0.0098 16.0 0.1 1.8 2 1 0 2 2 2 1 Shikimate kinase Thymidylate_kin PF02223.17 gi|118431358|ref|NP_147777.2| - 0.0046 16.7 0.0 0.0092 15.7 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase ABC_tran PF00005.27 gi|118431358|ref|NP_147777.2| - 0.0055 17.2 0.0 0.012 16.2 0.0 1.4 1 1 0 1 1 1 1 ABC transporter Mg_chelatase PF01078.21 gi|118431358|ref|NP_147777.2| - 0.0061 16.0 0.0 0.012 15.0 0.0 1.5 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|118431358|ref|NP_147777.2| - 0.0063 16.9 0.0 0.016 15.6 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|118431358|ref|NP_147777.2| - 0.0073 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|118431358|ref|NP_147777.2| - 0.0079 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|118431358|ref|NP_147777.2| - 0.02 14.6 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|118431358|ref|NP_147777.2| - 0.026 14.9 0.0 0.046 14.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase CoaE PF01121.20 gi|118431358|ref|NP_147777.2| - 0.027 14.2 0.0 0.047 13.4 0.0 1.5 1 1 0 1 1 1 0 Dephospho-CoA kinase AAA_14 PF13173.6 gi|118431358|ref|NP_147777.2| - 0.053 13.6 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|118431358|ref|NP_147777.2| - 0.053 12.8 0.0 0.075 12.3 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ AAA_7 PF12775.7 gi|118431358|ref|NP_147777.2| - 0.062 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region LytR_C PF13399.6 gi|118431358|ref|NP_147777.2| - 0.073 14.1 0.0 0.11 13.5 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator AAA_19 PF13245.6 gi|118431358|ref|NP_147777.2| - 0.075 13.4 0.1 0.12 12.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|118431358|ref|NP_147777.2| - 0.077 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Cytidylate_kin2 PF13189.6 gi|118431358|ref|NP_147777.2| - 0.092 12.9 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 Cytidylate kinase-like family LpxK PF02606.14 gi|118431358|ref|NP_147777.2| - 0.098 11.7 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase IPT PF01745.16 gi|118431358|ref|NP_147777.2| - 0.12 11.8 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase IstB_IS21 PF01695.17 gi|118431358|ref|NP_147777.2| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein CLP1_P PF16575.5 gi|118431358|ref|NP_147777.2| - 0.16 11.8 0.0 0.36 10.6 0.0 1.6 2 0 0 2 2 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PRK PF00485.18 gi|118431358|ref|NP_147777.2| - 0.16 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_3 PF07726.11 gi|118431358|ref|NP_147777.2| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|118431358|ref|NP_147777.2| - 0.17 11.1 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain TauE PF01925.19 gi|118431359|ref|NP_147778.2| - 2e-27 96.4 32.4 2.5e-27 96.1 32.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2070 PF09843.9 gi|118431359|ref|NP_147778.2| - 6.8 4.8 11.8 0.69 8.1 4.4 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2070) ATP-sulfurylase PF01747.17 gi|118431360|ref|NP_147779.2| - 6.6e-86 287.2 0.1 8.7e-86 286.8 0.1 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|118431360|ref|NP_147779.2| - 1.1e-48 164.9 0.0 2e-48 164.1 0.0 1.4 1 0 0 1 1 1 1 PUA-like domain Zn_ribbon_SprT PF17283.2 gi|118431360|ref|NP_147779.2| - 0.033 14.1 0.1 0.065 13.2 0.1 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Phosphodiest PF01663.22 gi|14601246|ref|NP_147780.1| - 1.5e-59 202.4 0.0 1.8e-59 202.1 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|14601246|ref|NP_147780.1| - 0.0059 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Sulfatase NTP_transferase PF00483.23 gi|118431361|ref|NP_147781.2| - 2.3e-24 86.3 0.0 3.1e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|118431361|ref|NP_147781.2| - 2.8e-13 49.0 14.2 3.2e-05 23.5 1.5 4.0 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|118431361|ref|NP_147781.2| - 2.6e-10 40.9 0.6 3.8e-10 40.3 0.6 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|118431361|ref|NP_147781.2| - 0.026 14.3 5.0 0.76 9.6 0.4 3.4 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|118431362|ref|NP_147783.2| - 2.2e-41 140.8 0.0 3.3e-27 94.9 0.0 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|118431362|ref|NP_147783.2| - 1.2e-19 70.8 0.0 2.7e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|118431362|ref|NP_147783.2| - 3.9e-13 49.4 0.0 1.1e-12 47.9 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|118431362|ref|NP_147783.2| - 0.00038 19.4 0.0 0.00058 18.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.9 gi|118431362|ref|NP_147783.2| - 0.00084 19.4 0.0 0.006 16.6 0.0 2.3 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS_2 PF13580.6 gi|118431362|ref|NP_147783.2| - 0.057 13.4 1.5 0.1 12.6 0.1 2.2 2 0 0 2 2 2 0 SIS domain DUF4350 PF14258.6 gi|118431362|ref|NP_147783.2| - 0.095 13.1 0.5 0.78 10.2 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) Hexapep PF00132.24 gi|118431363|ref|NP_147784.2| - 2.7e-14 52.3 8.9 1.3e-05 24.7 0.9 4.4 2 2 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|118431363|ref|NP_147784.2| - 7.1e-11 42.7 3.2 9e-11 42.4 0.4 2.2 2 1 0 2 2 2 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|118431363|ref|NP_147784.2| - 1e-09 38.4 0.1 4.6e-09 36.2 0.1 2.0 1 1 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|118431363|ref|NP_147784.2| - 2.1e-05 24.2 6.5 0.087 12.6 0.9 3.9 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|118431363|ref|NP_147784.2| - 0.0072 16.1 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Acyl-CoA_dh_N PF02771.16 gi|118431364|ref|YP_874878.1| - 6e-06 26.9 0.0 7.6e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain PIN PF01850.21 gi|118431365|ref|YP_874879.1| - 4.8e-17 62.6 0.8 5.9e-17 62.3 0.8 1.1 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|118431366|ref|NP_147787.2| - 5.8e-17 61.9 4.2 6.9e-17 61.6 4.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF5016 PF16408.5 gi|118431366|ref|NP_147787.2| - 0.15 12.1 0.0 0.18 11.8 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF5016) Acyl-CoA_dh_1 PF00441.24 gi|118431367|ref|YP_874880.1| - 1.6e-16 60.9 1.1 1.7e-16 60.8 1.1 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|118431367|ref|YP_874880.1| - 0.0038 17.5 0.6 0.0044 17.3 0.6 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|118431368|ref|YP_874881.1| - 0.0034 17.6 0.1 0.0034 17.6 0.1 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Baculo_PEP_C PF04513.12 gi|118431369|ref|NP_147790.2| - 0.01 15.9 0.2 0.023 14.7 0.2 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_20 PF12840.7 gi|118431370|ref|NP_147791.2| - 0.00038 20.5 0.8 0.00058 19.9 0.3 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|118431370|ref|NP_147791.2| - 0.14 12.0 1.5 20 5.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Peptidase_S8 PF00082.22 gi|118431371|ref|NP_147793.2| - 2.1e-24 86.3 0.0 4.8e-23 81.9 0.0 2.4 1 1 0 1 1 1 1 Subtilase family Spc7 PF08317.11 gi|14601261|ref|NP_147796.1| - 3.8e-13 49.0 32.2 6.8e-07 28.5 18.2 3.1 1 1 2 3 3 3 2 Spc7 kinetochore protein XhlA PF10779.9 gi|14601261|ref|NP_147796.1| - 4.1e-13 49.3 17.7 0.00045 20.4 0.7 6.1 1 1 5 7 7 6 4 Haemolysin XhlA FlaC_arch PF05377.11 gi|14601261|ref|NP_147796.1| - 1.4e-11 44.5 21.4 0.016 15.6 0.0 6.9 1 1 6 8 8 8 3 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.7 gi|14601261|ref|NP_147796.1| - 1.6e-11 44.5 31.0 8.9e-06 25.9 3.1 4.4 1 1 3 4 4 4 3 Tropomyosin like AAA_13 PF13166.6 gi|14601261|ref|NP_147796.1| - 2e-11 43.3 33.1 3.4e-08 32.6 7.4 2.1 1 1 1 2 2 2 2 AAA domain DUF1664 PF07889.12 gi|14601261|ref|NP_147796.1| - 4.3e-11 42.9 21.0 3.6e-05 23.8 4.9 4.4 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) Filament PF00038.21 gi|14601261|ref|NP_147796.1| - 1.6e-10 41.1 25.9 9.6e-05 22.1 11.5 3.2 1 1 2 3 3 3 3 Intermediate filament protein CENP-F_leu_zip PF10473.9 gi|14601261|ref|NP_147796.1| - 3.9e-10 39.9 37.0 7.5e-06 26.0 14.5 3.2 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|14601261|ref|NP_147796.1| - 5.1e-10 39.6 26.7 0.0012 19.0 8.5 3.4 1 1 2 3 3 3 3 Afadin- and alpha -actinin-Binding Baculo_PEP_C PF04513.12 gi|14601261|ref|NP_147796.1| - 6.2e-10 39.3 23.2 0.00012 22.1 12.8 4.0 1 1 3 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus ATG16 PF08614.11 gi|14601261|ref|NP_147796.1| - 1.1e-09 38.9 43.0 0.00025 21.4 19.0 4.0 1 1 3 4 4 4 3 Autophagy protein 16 (ATG16) DUF4201 PF13870.6 gi|14601261|ref|NP_147796.1| - 3.1e-09 36.8 16.5 0.00031 20.5 12.9 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) Laminin_II PF06009.12 gi|14601261|ref|NP_147796.1| - 3.8e-09 36.7 26.9 0.00062 19.8 7.3 4.2 1 1 3 4 4 4 2 Laminin Domain II EzrA PF06160.12 gi|14601261|ref|NP_147796.1| - 5.5e-09 34.8 18.5 1.2e-07 30.4 1.4 2.5 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA SlyX PF04102.12 gi|14601261|ref|NP_147796.1| - 8.7e-09 35.9 41.4 8.2e-05 23.2 1.2 5.6 2 1 4 6 6 6 1 SlyX MscS_porin PF12795.7 gi|14601261|ref|NP_147796.1| - 1.1e-08 35.0 51.4 1.4e-05 24.8 28.2 3.7 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain Tropomyosin PF00261.20 gi|14601261|ref|NP_147796.1| - 1.1e-08 34.7 34.7 0.002 17.6 1.6 3.0 1 1 2 3 3 3 3 Tropomyosin NPV_P10 PF05531.12 gi|14601261|ref|NP_147796.1| - 2.1e-08 34.5 27.7 0.14 12.6 8.7 5.5 1 1 3 4 4 4 1 Nucleopolyhedrovirus P10 protein FPP PF05911.11 gi|14601261|ref|NP_147796.1| - 5e-08 31.6 27.9 0.00035 18.9 21.3 2.3 1 1 1 2 2 2 2 Filament-like plant protein, long coiled-coil DUF4795 PF16043.5 gi|14601261|ref|NP_147796.1| - 7.1e-08 32.3 26.1 0.00024 20.8 4.5 3.3 1 1 2 3 3 3 3 Domain of unknown function (DUF4795) Atg14 PF10186.9 gi|14601261|ref|NP_147796.1| - 7.4e-08 31.8 21.9 1.5e-05 24.3 8.7 2.7 1 1 2 3 3 3 3 Vacuolar sorting 38 and autophagy-related subunit 14 DUF812 PF05667.11 gi|14601261|ref|NP_147796.1| - 8.2e-08 31.6 26.2 5.6e-06 25.5 24.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF812) Prefoldin_2 PF01920.20 gi|14601261|ref|NP_147796.1| - 9.7e-08 31.9 26.2 0.037 14.0 1.2 6.0 1 1 4 6 6 6 3 Prefoldin subunit ABC_tran_CTD PF16326.5 gi|14601261|ref|NP_147796.1| - 1.4e-07 31.7 36.5 0.00079 19.6 0.8 5.4 1 1 4 5 5 5 3 ABC transporter C-terminal domain Myosin_tail_1 PF01576.19 gi|14601261|ref|NP_147796.1| - 1.5e-07 29.7 31.3 0.00097 17.1 9.4 2.9 1 1 2 3 3 3 3 Myosin tail Lebercilin PF15619.6 gi|14601261|ref|NP_147796.1| - 2.8e-07 30.4 44.5 1.1e-06 28.4 14.9 2.6 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease TMF_DNA_bd PF12329.8 gi|14601261|ref|NP_147796.1| - 1.1e-06 28.5 30.4 0.0032 17.4 0.4 5.4 1 1 2 5 5 5 2 TATA element modulatory factor 1 DNA binding DUF724 PF05266.14 gi|14601261|ref|NP_147796.1| - 1.8e-06 27.9 18.7 0.00059 19.7 6.6 3.1 1 1 2 3 3 3 3 Protein of unknown function (DUF724) Fez1 PF06818.15 gi|14601261|ref|NP_147796.1| - 2.3e-06 28.2 25.0 0.00088 19.8 19.8 2.2 1 1 1 2 2 2 2 Fez1 BLOC1_2 PF10046.9 gi|14601261|ref|NP_147796.1| - 2.4e-06 27.8 27.4 0.042 14.2 1.1 5.3 1 1 4 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.6 gi|14601261|ref|NP_147796.1| - 2.4e-06 27.1 24.3 0.00011 21.6 9.2 3.4 1 1 1 3 3 3 1 Growth-arrest specific micro-tubule binding DUF745 PF05335.13 gi|14601261|ref|NP_147796.1| - 2.4e-06 27.4 31.7 0.0009 19.0 16.1 3.2 1 1 1 3 3 3 2 Protein of unknown function (DUF745) DUF2730 PF10805.8 gi|14601261|ref|NP_147796.1| - 2.5e-06 27.5 21.4 0.0066 16.5 0.8 5.0 1 1 3 4 4 4 3 Protein of unknown function (DUF2730) HrpB7 PF09486.10 gi|14601261|ref|NP_147796.1| - 3.3e-06 27.6 39.9 0.019 15.3 1.9 4.6 1 1 3 4 4 3 2 Bacterial type III secretion protein (HrpB7) HMMR_N PF15905.5 gi|14601261|ref|NP_147796.1| - 3.5e-06 26.7 25.9 0.00062 19.3 2.3 2.5 1 1 1 2 2 2 2 Hyaluronan mediated motility receptor N-terminal CLZ PF16526.5 gi|14601261|ref|NP_147796.1| - 4.5e-06 26.9 36.3 0.045 14.1 0.6 6.2 1 1 4 6 6 6 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3450 PF11932.8 gi|14601261|ref|NP_147796.1| - 4.7e-06 26.1 32.0 0.0014 18.0 12.4 3.7 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) TolA_bind_tri PF16331.5 gi|14601261|ref|NP_147796.1| - 5.7e-06 26.3 44.9 0.0038 17.3 1.4 5.5 2 1 4 6 6 6 2 TolA binding protein trimerisation FliJ PF02050.16 gi|14601261|ref|NP_147796.1| - 5.9e-06 26.5 25.2 0.002 18.3 13.0 3.5 1 1 2 3 3 2 2 Flagellar FliJ protein DUF16 PF01519.16 gi|14601261|ref|NP_147796.1| - 6.1e-06 26.7 23.8 0.016 15.7 3.6 4.5 1 1 2 3 3 2 2 Protein of unknown function DUF16 Tektin PF03148.14 gi|14601261|ref|NP_147796.1| - 6.4e-06 25.2 26.4 0.0004 19.2 13.5 4.2 1 1 2 3 3 3 1 Tektin family DHR10 PF18595.1 gi|14601261|ref|NP_147796.1| - 6.6e-06 26.2 38.3 0.016 15.2 3.4 4.2 1 1 3 4 4 4 2 Designed helical repeat protein 10 domain UPF0242 PF06785.11 gi|14601261|ref|NP_147796.1| - 7.2e-06 26.2 27.5 0.0011 19.1 2.5 3.2 1 1 2 3 3 3 1 Uncharacterised protein family (UPF0242) N-terminus IFT57 PF10498.9 gi|14601261|ref|NP_147796.1| - 8.2e-06 25.0 18.8 0.00095 18.2 5.5 2.8 1 1 2 3 3 3 2 Intra-flagellar transport protein 57 Mod_r PF07200.13 gi|14601261|ref|NP_147796.1| - 1.4e-05 25.2 31.2 0.0016 18.6 12.1 3.1 1 1 1 3 3 3 1 Modifier of rudimentary (Mod(r)) protein Fib_alpha PF08702.10 gi|14601261|ref|NP_147796.1| - 1.4e-05 25.3 16.2 0.005 17.0 6.3 3.6 1 1 4 5 5 5 3 Fibrinogen alpha/beta chain family Prefoldin PF02996.17 gi|14601261|ref|NP_147796.1| - 1.5e-05 24.9 25.7 0.6 10.0 0.0 6.3 1 1 6 7 7 7 1 Prefoldin subunit TACC_C PF05010.14 gi|14601261|ref|NP_147796.1| - 1.7e-05 24.7 21.7 0.0021 17.9 17.7 2.3 1 1 1 2 2 2 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal PspA_IM30 PF04012.12 gi|14601261|ref|NP_147796.1| - 1.7e-05 24.5 28.7 0.00049 19.8 5.6 4.4 1 1 3 4 4 4 2 PspA/IM30 family CALCOCO1 PF07888.11 gi|14601261|ref|NP_147796.1| - 2e-05 23.7 33.4 0.00013 21.0 32.2 2.1 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like Phage_GP20 PF06810.11 gi|14601261|ref|NP_147796.1| - 2.2e-05 24.3 23.1 0.79 9.5 0.2 5.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 Snapin_Pallidin PF14712.6 gi|14601261|ref|NP_147796.1| - 2.3e-05 24.7 25.9 0.014 15.8 7.4 4.9 1 1 3 5 5 3 2 Snapin/Pallidin FH2 PF02181.23 gi|14601261|ref|NP_147796.1| - 2.3e-05 23.7 17.6 0.012 14.7 4.0 3.1 1 1 2 3 3 3 2 Formin Homology 2 Domain Uso1_p115_C PF04871.13 gi|14601261|ref|NP_147796.1| - 2.6e-05 24.6 33.6 0.063 13.7 10.1 4.1 1 1 3 4 4 4 1 Uso1 / p115 like vesicle tethering protein, C terminal region Nup54 PF13874.6 gi|14601261|ref|NP_147796.1| - 3.5e-05 23.9 27.8 0.0019 18.3 11.0 3.2 1 1 1 3 3 3 2 Nucleoporin complex subunit 54 DUF948 PF06103.11 gi|14601261|ref|NP_147796.1| - 3.5e-05 24.0 20.8 0.057 13.7 0.6 5.1 1 1 6 7 7 7 3 Bacterial protein of unknown function (DUF948) DUF3584 PF12128.8 gi|14601261|ref|NP_147796.1| - 3.7e-05 21.5 31.2 8.9e-05 20.2 31.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) TPR_MLP1_2 PF07926.12 gi|14601261|ref|NP_147796.1| - 4.6e-05 23.5 39.8 0.0012 18.9 14.5 4.3 1 1 4 5 5 4 2 TPR/MLP1/MLP2-like protein Exonuc_VII_L PF02601.15 gi|14601261|ref|NP_147796.1| - 4.8e-05 23.1 20.9 0.37 10.3 21.0 2.6 1 1 0 1 1 1 1 Exonuclease VII, large subunit Seryl_tRNA_N PF02403.22 gi|14601261|ref|NP_147796.1| - 5.6e-05 23.3 22.9 0.12 12.6 7.3 4.6 1 1 6 7 7 6 2 Seryl-tRNA synthetase N-terminal domain HemX PF04375.14 gi|14601261|ref|NP_147796.1| - 5.7e-05 22.6 34.1 0.048 13.0 2.4 4.0 1 1 3 4 4 4 3 HemX, putative uroporphyrinogen-III C-methyltransferase SHE3 PF17078.5 gi|14601261|ref|NP_147796.1| - 8.4e-05 22.4 20.6 0.00037 20.3 18.8 2.2 1 1 1 2 2 2 1 SWI5-dependent HO expression protein 3 BRE1 PF08647.11 gi|14601261|ref|NP_147796.1| - 9.1e-05 22.5 22.1 0.0035 17.4 3.3 3.1 2 1 1 3 3 2 2 BRE1 E3 ubiquitin ligase CC2-LZ PF16516.5 gi|14601261|ref|NP_147796.1| - 0.0001 22.6 22.0 0.43 11.0 2.4 4.8 1 1 4 5 5 4 2 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator HOOK PF05622.12 gi|14601261|ref|NP_147796.1| - 0.00011 20.6 30.4 0.0014 16.9 11.0 2.4 1 1 2 3 3 3 3 HOOK protein Laminin_I PF06008.14 gi|14601261|ref|NP_147796.1| - 0.00012 21.9 28.6 0.00021 21.1 27.8 1.8 1 1 0 1 1 1 1 Laminin Domain I HAP1_N PF04849.13 gi|14601261|ref|NP_147796.1| - 0.00013 21.3 35.0 0.0012 18.1 35.0 2.6 1 1 0 1 1 1 1 HAP1 N-terminal conserved region MAD PF05557.13 gi|14601261|ref|NP_147796.1| - 0.00013 20.5 28.3 0.0013 17.2 20.9 2.4 1 1 0 2 2 2 1 Mitotic checkpoint protein FapA PF03961.13 gi|14601261|ref|NP_147796.1| - 0.00015 20.6 12.7 0.028 13.0 6.3 2.9 1 1 2 3 3 3 3 Flagellar Assembly Protein A APG6_N PF17675.1 gi|14601261|ref|NP_147796.1| - 0.00019 22.0 42.8 0.0033 17.9 15.8 3.6 1 1 2 3 3 3 2 Apg6 coiled-coil region ZapB PF06005.12 gi|14601261|ref|NP_147796.1| - 0.0002 21.7 34.5 0.031 14.7 10.7 4.9 1 1 4 5 5 5 2 Cell division protein ZapB YabA PF06156.13 gi|14601261|ref|NP_147796.1| - 0.00023 21.8 21.3 0.25 12.0 2.0 4.6 1 1 3 4 4 4 2 Initiation control protein YabA COG2 PF06148.11 gi|14601261|ref|NP_147796.1| - 0.00024 21.2 26.7 0.11 12.6 4.5 4.5 1 1 3 4 4 4 2 COG (conserved oligomeric Golgi) complex component, COG2 THOC7 PF05615.13 gi|14601261|ref|NP_147796.1| - 0.00025 21.3 29.7 0.061 13.6 12.2 3.8 1 1 2 3 3 3 2 Tho complex subunit 7 APG17 PF04108.12 gi|14601261|ref|NP_147796.1| - 0.00039 19.6 17.0 0.00069 18.8 17.0 1.4 1 0 0 1 1 1 1 Autophagy protein Apg17 TMPIT PF07851.13 gi|14601261|ref|NP_147796.1| - 0.0005 19.4 14.8 0.26 10.5 0.0 3.0 1 1 1 2 2 2 1 TMPIT-like protein KASH_CCD PF14662.6 gi|14601261|ref|NP_147796.1| - 0.00056 19.8 30.9 0.026 14.3 10.7 2.4 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 or KASH WEMBL PF05701.11 gi|14601261|ref|NP_147796.1| - 0.00058 18.7 19.0 0.00058 18.7 19.0 1.9 1 1 1 2 2 2 1 Weak chloroplast movement under blue light Rootletin PF15035.6 gi|14601261|ref|NP_147796.1| - 0.00062 19.8 15.4 0.00062 19.8 15.4 2.6 1 1 1 2 2 2 1 Ciliary rootlet component, centrosome cohesion Spectrin PF00435.21 gi|14601261|ref|NP_147796.1| - 0.00081 19.9 26.6 0.0033 17.9 2.3 3.4 1 1 1 3 3 3 1 Spectrin repeat Leu_zip PF15294.6 gi|14601261|ref|NP_147796.1| - 0.001 18.7 21.8 0.0039 16.7 8.6 2.6 1 1 2 3 3 3 3 Leucine zipper EMP24_GP25L PF01105.24 gi|14601261|ref|NP_147796.1| - 0.001 19.1 20.5 0.8 9.6 0.8 4.7 1 1 3 5 5 4 0 emp24/gp25L/p24 family/GOLD DUF4407 PF14362.6 gi|14601261|ref|NP_147796.1| - 0.001 18.5 25.6 5.4 6.3 25.6 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Cast PF10174.9 gi|14601261|ref|NP_147796.1| - 0.001 17.4 25.8 0.0014 17.0 25.8 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone PI3K_P85_iSH2 PF16454.5 gi|14601261|ref|NP_147796.1| - 0.0011 18.6 20.1 0.12 11.9 3.0 3.6 1 1 2 3 3 3 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain RmuC PF02646.16 gi|14601261|ref|NP_147796.1| - 0.0011 18.1 17.8 0.11 11.6 0.2 4.1 1 1 3 4 4 4 2 RmuC family Jnk-SapK_ap_N PF09744.9 gi|14601261|ref|NP_147796.1| - 0.0013 19.0 32.2 0.49 10.6 12.9 3.8 1 1 3 4 4 4 1 JNK_SAPK-associated protein-1 WASH_WAHD PF11945.8 gi|14601261|ref|NP_147796.1| - 0.0014 18.3 3.0 0.13 11.7 2.8 3.2 1 1 1 2 2 2 1 WAHD domain of WASH complex Med9 PF07544.13 gi|14601261|ref|NP_147796.1| - 0.0014 18.6 23.6 0.022 14.8 0.7 4.7 1 1 3 4 4 4 1 RNA polymerase II transcription mediator complex subunit 9 COG6 PF06419.11 gi|14601261|ref|NP_147796.1| - 0.0016 16.7 21.2 0.004 15.4 1.7 3.6 1 1 2 3 3 3 1 Conserved oligomeric complex COG6 DivIVA PF05103.13 gi|14601261|ref|NP_147796.1| - 0.0017 18.5 27.6 0.018 15.1 4.0 4.4 1 1 4 5 5 3 2 DivIVA protein COG5 PF10392.9 gi|14601261|ref|NP_147796.1| - 0.0018 18.4 22.5 0.016 15.4 6.9 3.9 1 1 3 4 4 4 2 Golgi transport complex subunit 5 HAUS-augmin3 PF14932.6 gi|14601261|ref|NP_147796.1| - 0.0023 17.6 31.7 0.031 13.9 9.0 3.1 1 1 3 4 4 4 3 HAUS augmin-like complex subunit 3 Taxilin PF09728.9 gi|14601261|ref|NP_147796.1| - 0.0024 17.1 19.9 0.81 8.8 0.0 2.8 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Tup_N PF08581.10 gi|14601261|ref|NP_147796.1| - 0.0024 18.1 19.8 0.057 13.7 3.9 4.2 1 1 3 5 5 4 1 Tup N-terminal Spc24 PF08286.11 gi|14601261|ref|NP_147796.1| - 0.0025 18.0 33.9 0.66 10.3 3.6 5.6 1 1 4 5 5 5 1 Spc24 subunit of Ndc80 DUF4472 PF14739.6 gi|14601261|ref|NP_147796.1| - 0.0026 18.5 23.5 0.26 12.0 0.4 3.7 1 1 2 3 3 3 2 Domain of unknown function (DUF4472) DUF4200 PF13863.6 gi|14601261|ref|NP_147796.1| - 0.0026 18.1 21.5 0.039 14.3 5.0 3.6 1 1 3 4 4 3 2 Domain of unknown function (DUF4200) Golgin_A5 PF09787.9 gi|14601261|ref|NP_147796.1| - 0.0027 17.2 31.1 0.037 13.5 12.8 2.8 1 1 2 3 3 3 2 Golgin subfamily A member 5 Uds1 PF15456.6 gi|14601261|ref|NP_147796.1| - 0.003 17.7 28.2 0.017 15.3 9.7 4.0 1 1 3 4 4 3 2 Up-regulated During Septation Occludin_ELL PF07303.13 gi|14601261|ref|NP_147796.1| - 0.0032 18.2 10.6 1.1 10.0 1.0 4.2 1 1 4 5 5 5 0 Occludin homology domain ING PF12998.7 gi|14601261|ref|NP_147796.1| - 0.0036 17.9 16.5 0.008 16.7 5.3 3.2 1 1 0 2 2 2 1 Inhibitor of growth proteins N-terminal histone-binding Rab5-bind PF09311.11 gi|14601261|ref|NP_147796.1| - 0.0041 16.6 10.2 0.0041 16.6 10.2 3.1 1 1 2 3 3 3 1 Rabaptin-like protein Matrilin_ccoil PF10393.9 gi|14601261|ref|NP_147796.1| - 0.0044 16.9 33.4 0.14 12.0 0.6 7.6 5 3 3 8 8 7 1 Trimeric coiled-coil oligomerisation domain of matrilin TMF_TATA_bd PF12325.8 gi|14601261|ref|NP_147796.1| - 0.0044 17.2 13.4 0.0044 17.2 13.4 3.9 1 1 3 4 4 3 1 TATA element modulatory factor 1 TATA binding DUF4988 PF16378.5 gi|14601261|ref|NP_147796.1| - 0.0044 16.7 11.8 2.8 7.6 0.1 5.4 1 1 4 5 5 5 0 Domain of unknown function SKA1 PF07160.12 gi|14601261|ref|NP_147796.1| - 0.0045 16.9 16.9 0.62 9.9 3.1 3.8 1 1 3 4 4 4 1 Spindle and kinetochore-associated protein 1 T3SSipB PF16535.5 gi|14601261|ref|NP_147796.1| - 0.0051 17.3 27.8 0.15 12.6 7.0 3.0 1 1 1 2 2 2 1 Type III cell invasion protein SipB Cnn_1N PF07989.11 gi|14601261|ref|NP_147796.1| - 0.0053 16.9 23.3 0.4 10.9 2.1 4.5 2 1 2 4 4 4 2 Centrosomin N-terminal motif 1 ERM PF00769.19 gi|14601261|ref|NP_147796.1| - 0.0059 16.4 30.9 0.022 14.6 24.6 2.4 1 1 1 2 2 2 1 Ezrin/radixin/moesin family DegS PF05384.11 gi|14601261|ref|NP_147796.1| - 0.0071 15.8 1.8 0.0071 15.8 1.8 2.7 1 1 2 3 3 3 2 Sensor protein DegS IL11 PF07400.11 gi|14601261|ref|NP_147796.1| - 0.0077 15.9 6.8 0.25 11.0 2.6 2.4 1 1 1 2 2 2 1 Interleukin 11 KxDL PF10241.9 gi|14601261|ref|NP_147796.1| - 0.0078 16.5 16.3 0.14 12.5 4.9 4.1 1 1 3 4 4 3 1 Uncharacterized conserved protein YscO PF07321.12 gi|14601261|ref|NP_147796.1| - 0.012 15.6 36.0 0.15 12.0 1.3 4.3 1 1 3 4 4 4 0 Type III secretion protein YscO MbeD_MobD PF04899.12 gi|14601261|ref|NP_147796.1| - 0.013 15.6 0.3 0.013 15.6 0.3 4.4 2 2 2 4 4 3 0 MbeD/MobD like zf-C4H2 PF10146.9 gi|14601261|ref|NP_147796.1| - 0.013 15.8 16.9 0.19 12.0 0.6 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein Rx_N PF18052.1 gi|14601261|ref|NP_147796.1| - 0.013 15.8 25.4 0.8 10.0 2.9 4.4 1 1 3 4 4 4 0 Rx N-terminal domain RPW8 PF05659.11 gi|14601261|ref|NP_147796.1| - 0.013 15.2 9.2 1.2 8.9 0.6 4.5 1 1 2 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Nsp1_C PF05064.13 gi|14601261|ref|NP_147796.1| - 0.013 15.3 32.9 0.093 12.5 2.8 4.9 1 1 2 4 4 4 0 Nsp1-like C-terminal region LMP PF04778.12 gi|14601261|ref|NP_147796.1| - 0.014 15.3 9.8 4.1 7.3 0.5 3.6 2 1 2 4 4 3 0 LMP repeated region Nup88 PF10168.9 gi|14601261|ref|NP_147796.1| - 0.018 12.9 16.2 0.041 11.7 15.7 1.7 1 1 0 1 1 1 0 Nuclear pore component DUF1411 PF07199.11 gi|14601261|ref|NP_147796.1| - 0.019 14.6 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1411) Hemagglutinin PF00509.18 gi|14601261|ref|NP_147796.1| - 0.02 13.4 6.7 0.2 10.0 0.0 3.1 1 1 1 3 3 3 0 Haemagglutinin DivIC PF04977.15 gi|14601261|ref|NP_147796.1| - 0.021 14.6 33.7 0.38 10.5 4.3 5.8 2 1 3 6 6 6 0 Septum formation initiator DUF2968 PF11180.8 gi|14601261|ref|NP_147796.1| - 0.021 14.4 0.7 0.021 14.4 0.7 3.2 1 1 2 3 3 2 0 Protein of unknown function (DUF2968) LXG PF04740.12 gi|14601261|ref|NP_147796.1| - 0.022 14.5 21.7 0.055 13.2 5.4 2.6 1 1 1 2 2 2 0 LXG domain of WXG superfamily Allexi_40kDa PF05549.11 gi|14601261|ref|NP_147796.1| - 0.022 14.3 16.9 0.42 10.1 5.4 3.2 1 1 3 4 4 4 0 Allexivirus 40kDa protein Vac_Fusion PF02346.16 gi|14601261|ref|NP_147796.1| - 0.023 14.3 2.7 2.7 7.7 0.1 4.0 3 2 2 5 5 3 0 Chordopoxvirus multifunctional envelope protein A27 Noelin-1 PF12308.8 gi|14601261|ref|NP_147796.1| - 0.023 14.7 19.1 0.034 14.1 0.6 4.4 1 1 2 4 4 4 0 Neurogenesis glycoprotein Sec2p PF06428.11 gi|14601261|ref|NP_147796.1| - 0.023 14.6 32.3 0.97 9.4 0.6 4.6 2 1 2 4 4 4 0 GDP/GTP exchange factor Sec2p Syntaxin-6_N PF09177.11 gi|14601261|ref|NP_147796.1| - 0.024 15.2 27.6 2 9.0 10.1 4.9 1 1 3 4 4 4 0 Syntaxin 6, N-terminal Prominin PF05478.11 gi|14601261|ref|NP_147796.1| - 0.025 12.6 15.1 0.12 10.3 6.6 2.4 1 1 2 3 3 3 0 Prominin DUF3829 PF12889.7 gi|14601261|ref|NP_147796.1| - 0.025 14.0 8.1 0.093 12.2 1.4 3.2 2 1 2 4 4 3 0 Protein of unknown function (DUF3829) ISG65-75 PF11727.8 gi|14601261|ref|NP_147796.1| - 0.028 13.6 10.0 0.19 10.9 3.6 2.8 1 1 0 2 2 2 0 Invariant surface glycoprotein DUF5082 PF16888.5 gi|14601261|ref|NP_147796.1| - 0.042 14.1 19.8 0.45 10.8 1.9 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) Phage_GPO PF05929.11 gi|14601261|ref|NP_147796.1| - 0.052 13.2 25.4 20 4.7 5.9 3.7 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4349 PF14257.6 gi|14601261|ref|NP_147796.1| - 0.056 12.9 47.3 0.017 14.5 8.2 4.3 1 1 2 3 3 2 0 Domain of unknown function (DUF4349) DUF4618 PF15397.6 gi|14601261|ref|NP_147796.1| - 0.056 12.9 23.5 0.23 10.9 13.0 3.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) CCDC144C PF14915.6 gi|14601261|ref|NP_147796.1| - 0.056 12.6 27.4 0.072 12.2 1.0 2.4 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region FmiP_Thoc5 PF09766.9 gi|14601261|ref|NP_147796.1| - 0.057 12.7 20.2 12 5.1 0.1 3.8 1 1 2 3 3 3 0 Fms-interacting protein/Thoc5 Sec34 PF04136.15 gi|14601261|ref|NP_147796.1| - 0.059 13.2 22.2 0.44 10.4 0.5 3.6 1 1 1 3 3 3 0 Sec34-like family BST2 PF16716.5 gi|14601261|ref|NP_147796.1| - 0.064 13.9 33.0 0.95 10.1 5.7 4.5 1 1 5 6 6 6 0 Bone marrow stromal antigen 2 Rho_Binding PF08912.11 gi|14601261|ref|NP_147796.1| - 0.065 14.0 24.9 4.3 8.2 0.2 5.6 2 2 2 5 5 4 0 Rho Binding Big_3_5 PF16640.5 gi|14601261|ref|NP_147796.1| - 0.067 13.4 1.8 0.095 12.9 0.5 2.0 2 0 0 2 2 1 0 Bacterial Ig-like domain (group 3) Bacillus_HBL PF05791.11 gi|14601261|ref|NP_147796.1| - 0.068 13.0 20.2 0.99 9.2 6.3 3.6 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Wtap PF17098.5 gi|14601261|ref|NP_147796.1| - 0.069 13.1 35.9 0.79 9.6 0.7 4.9 2 1 1 4 4 4 0 WTAP/Mum2p family Fmp27_WPPW PF10359.9 gi|14601261|ref|NP_147796.1| - 0.07 12.0 18.8 0.55 9.0 6.0 3.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.21 gi|14601261|ref|NP_147796.1| - 0.073 13.2 18.1 9.9 6.3 0.1 5.9 1 1 8 9 9 9 0 bZIP transcription factor BicD PF09730.9 gi|14601261|ref|NP_147796.1| - 0.074 11.5 23.7 0.11 10.9 22.4 1.6 1 1 0 1 1 1 0 Microtubule-associated protein Bicaudal-D FUSC PF04632.12 gi|14601261|ref|NP_147796.1| - 0.075 11.6 34.9 1.2 7.6 17.0 2.6 1 1 1 2 2 2 0 Fusaric acid resistance protein family CEP63 PF17045.5 gi|14601261|ref|NP_147796.1| - 0.08 12.8 27.2 0.1 12.5 5.5 3.0 1 1 2 3 3 3 0 Centrosomal protein of 63 kDa GrpE PF01025.19 gi|14601261|ref|NP_147796.1| - 0.085 12.5 24.0 1.6 8.4 0.6 4.4 1 1 2 4 4 4 0 GrpE MtrB PF05440.12 gi|14601261|ref|NP_147796.1| - 0.086 13.3 5.8 13 6.3 0.1 4.5 1 1 4 5 5 5 0 Tetrahydromethanopterin S-methyltransferase subunit B RasGAP_C PF03836.15 gi|14601261|ref|NP_147796.1| - 0.087 13.0 14.3 2.2 8.5 5.1 3.2 1 1 2 3 3 3 0 RasGAP C-terminus Cep57_CLD_2 PF14197.6 gi|14601261|ref|NP_147796.1| - 0.092 12.8 42.4 0.042 13.9 1.4 5.9 2 1 2 5 5 3 0 Centrosome localisation domain of PPC89 TRPM_tetra PF16519.5 gi|14601261|ref|NP_147796.1| - 0.096 12.8 23.9 4.7 7.4 1.6 6.2 1 1 6 7 7 6 0 Tetramerisation domain of TRPM OmpH PF03938.14 gi|14601261|ref|NP_147796.1| - 0.097 13.0 27.4 0.46 10.8 1.0 3.2 1 1 1 2 2 1 0 Outer membrane protein (OmpH-like) Phage_tail_NK PF16532.5 gi|14601261|ref|NP_147796.1| - 0.097 12.3 10.5 0.15 11.7 0.1 3.9 3 2 1 4 4 3 0 Sf6-type phage tail needle knob or tip of some Caudovirales DUF3552 PF12072.8 gi|14601261|ref|NP_147796.1| - 0.099 12.0 31.0 0.11 12.0 3.9 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF3552) Flagellin_C PF00700.21 gi|14601261|ref|NP_147796.1| - 0.11 12.9 13.5 0.067 13.6 3.7 4.0 1 1 2 4 4 3 0 Bacterial flagellin C-terminal helical region MitMem_reg PF13012.6 gi|14601261|ref|NP_147796.1| - 0.11 12.9 13.6 26 5.3 0.2 4.0 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function MCU PF04678.13 gi|14601261|ref|NP_147796.1| - 0.12 12.4 18.9 0.21 11.7 3.5 3.3 1 1 1 2 2 2 0 Mitochondrial calcium uniporter GOLGA2L5 PF15070.6 gi|14601261|ref|NP_147796.1| - 0.13 10.9 30.2 0.13 10.9 3.1 2.1 1 1 1 2 2 2 0 Putative golgin subfamily A member 2-like protein 5 MCPsignal PF00015.21 gi|14601261|ref|NP_147796.1| - 0.15 11.9 17.0 0.21 11.4 1.6 3.6 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Mce4_CUP1 PF11887.8 gi|14601261|ref|NP_147796.1| - 0.15 11.5 17.9 0.09 12.2 6.7 3.2 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative AATF-Che1 PF13339.6 gi|14601261|ref|NP_147796.1| - 0.16 12.7 17.4 2.1e+02 2.5 17.4 3.0 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF641 PF04859.12 gi|14601261|ref|NP_147796.1| - 0.17 12.2 21.7 1.7 9.0 4.1 4.5 1 1 3 5 5 4 0 Plant protein of unknown function (DUF641) Hrs_helical PF12210.8 gi|14601261|ref|NP_147796.1| - 0.17 12.4 17.3 6.5 7.4 0.3 3.9 1 1 3 4 4 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF4164 PF13747.6 gi|14601261|ref|NP_147796.1| - 0.17 12.2 42.4 0.12 12.6 5.7 4.3 2 2 2 4 4 4 0 Domain of unknown function (DUF4164) Cob_adeno_trans PF01923.18 gi|14601261|ref|NP_147796.1| - 0.17 12.0 18.6 0.31 11.2 3.4 3.9 1 1 3 4 4 4 0 Cobalamin adenosyltransferase FliD_C PF07195.12 gi|14601261|ref|NP_147796.1| - 0.19 11.1 15.5 1.4 8.3 5.6 3.6 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Spc29 PF17082.5 gi|14601261|ref|NP_147796.1| - 0.2 11.5 14.6 3.8 7.3 6.5 3.5 1 1 2 3 3 3 0 Spindle Pole Component 29 HIP1_clath_bdg PF16515.5 gi|14601261|ref|NP_147796.1| - 0.2 12.3 37.5 0.3 11.7 12.2 4.0 1 1 5 6 6 6 0 Clathrin-binding domain of Huntingtin-interacting protein 1 LPP PF04728.13 gi|14601261|ref|NP_147796.1| - 0.2 12.1 31.6 2.7 8.5 2.2 6.8 2 1 4 6 6 5 0 Lipoprotein leucine-zipper MPS2 PF17060.5 gi|14601261|ref|NP_147796.1| - 0.21 10.8 18.0 0.99 8.6 10.2 2.8 1 1 2 4 4 3 0 Monopolar spindle protein 2 Gp58 PF07902.11 gi|14601261|ref|NP_147796.1| - 0.22 9.8 16.1 0.11 10.8 12.0 2.0 1 1 0 1 1 1 0 gp58-like protein CENP-H PF05837.12 gi|14601261|ref|NP_147796.1| - 0.23 11.9 27.7 0.5 10.8 9.7 3.0 1 1 2 3 3 3 0 Centromere protein H (CENP-H) DUF2576 PF10845.8 gi|14601261|ref|NP_147796.1| - 0.23 11.1 0.2 2.7 7.7 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2576) Cluap1 PF10234.9 gi|14601261|ref|NP_147796.1| - 0.26 10.6 23.3 0.12 11.8 11.5 3.6 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF4686 PF15742.5 gi|14601261|ref|NP_147796.1| - 0.27 10.3 31.3 0.64 9.1 17.6 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4686) ApoC-I PF04691.12 gi|14601261|ref|NP_147796.1| - 0.28 11.1 3.8 2 8.4 0.1 3.6 3 1 0 4 4 1 0 Apolipoprotein C-I (ApoC-1) FemAB PF02388.16 gi|14601261|ref|NP_147796.1| - 0.29 10.0 13.0 2.6 6.8 1.9 3.6 2 1 3 5 5 4 0 FemAB family WXG100 PF06013.12 gi|14601261|ref|NP_147796.1| - 0.29 11.4 26.1 6.5 7.1 0.4 4.9 1 1 4 5 5 5 0 Proteins of 100 residues with WXG DUF2203 PF09969.9 gi|14601261|ref|NP_147796.1| - 0.32 11.7 22.1 1.7 9.4 5.0 3.8 1 1 4 5 5 5 0 Uncharacterized conserved protein (DUF2203) MT PF12777.7 gi|14601261|ref|NP_147796.1| - 0.32 10.0 12.4 0.057 12.4 5.3 2.3 1 1 1 2 2 2 0 Microtubule-binding stalk of dynein motor Csm1_N PF18504.1 gi|14601261|ref|NP_147796.1| - 0.39 11.1 36.7 1.2 9.5 1.0 6.6 1 1 6 7 7 7 0 Csm1 N-terminal domain LMBR1 PF04791.16 gi|14601261|ref|NP_147796.1| - 0.41 9.5 10.7 0.69 8.7 10.7 1.4 1 1 0 1 1 1 0 LMBR1-like membrane protein V_ATPase_I PF01496.19 gi|14601261|ref|NP_147796.1| - 0.42 8.5 14.7 45 1.8 14.7 2.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family HSBP1 PF06825.12 gi|14601261|ref|NP_147796.1| - 0.43 10.5 22.9 0.39 10.6 0.2 6.1 2 1 4 6 6 4 0 Heat shock factor binding protein 1 Nup54_57_C PF18570.1 gi|14601261|ref|NP_147796.1| - 0.45 10.2 5.7 1.2 8.7 0.4 3.7 4 0 0 4 4 2 0 NUP57/Nup54 C-terminal domain TRAF_BIRC3_bd PF16673.5 gi|14601261|ref|NP_147796.1| - 0.46 10.3 0.0 0.46 10.3 0.0 4.1 1 1 4 5 5 5 0 TNF receptor-associated factor BIRC3 binding domain FliD_N PF02465.18 gi|14601261|ref|NP_147796.1| - 0.47 11.2 23.1 2.2 9.0 5.1 4.4 1 1 1 2 2 1 0 Flagellar hook-associated protein 2 N-terminus DUF1465 PF07323.12 gi|14601261|ref|NP_147796.1| - 0.48 10.3 19.6 0.79 9.5 0.8 4.1 1 1 1 4 4 4 0 Protein of unknown function (DUF1465) SesA PF17107.5 gi|14601261|ref|NP_147796.1| - 0.5 10.6 16.6 3 8.1 9.2 3.4 1 1 4 5 5 4 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF4140 PF13600.6 gi|14601261|ref|NP_147796.1| - 0.5 10.8 40.7 2.1 8.9 1.7 6.9 1 1 2 3 3 2 0 N-terminal domain of unknown function (DUF4140) Vip3A_N PF12495.8 gi|14601261|ref|NP_147796.1| - 0.51 10.2 2.8 12 5.7 0.5 2.4 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal CorA PF01544.18 gi|14601261|ref|NP_147796.1| - 0.58 9.4 27.0 0.099 11.9 12.5 2.9 1 1 3 4 4 4 0 CorA-like Mg2+ transporter protein DUF4763 PF15960.5 gi|14601261|ref|NP_147796.1| - 0.7 9.2 24.4 0.29 10.4 8.5 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) DUF4446 PF14584.6 gi|14601261|ref|NP_147796.1| - 0.76 9.8 11.4 3.5 7.6 0.4 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) Troponin PF00992.20 gi|14601261|ref|NP_147796.1| - 0.76 10.1 18.3 11 6.4 1.5 3.4 1 1 2 3 3 3 0 Troponin DUF2400 PF09674.10 gi|14601261|ref|NP_147796.1| - 0.82 9.6 4.5 25 4.8 4.5 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2400) DLP_helical PF18709.1 gi|14601261|ref|NP_147796.1| - 0.99 8.5 23.6 0.33 10.1 1.4 3.9 1 1 3 4 4 3 0 Dynamin-like helical domain Vps52 PF04129.12 gi|14601261|ref|NP_147796.1| - 1 8.0 13.8 0.73 8.5 1.7 2.8 1 1 2 3 3 3 0 Vps52 / Sac2 family YojJ PF10372.9 gi|14601261|ref|NP_147796.1| - 1.1 9.4 14.2 6.2 7.0 1.4 5.2 2 1 4 6 6 3 0 Bacterial membrane-spanning protein N-terminus SMODS PF18144.1 gi|14601261|ref|NP_147796.1| - 1.4 9.1 5.7 2.2 8.4 0.0 3.4 3 1 1 5 5 2 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DASH_Dam1 PF08653.10 gi|14601261|ref|NP_147796.1| - 1.4 8.8 15.8 15 5.5 0.7 5.7 2 1 4 6 6 5 0 DASH complex subunit Dam1 Vps53_N PF04100.12 gi|14601261|ref|NP_147796.1| - 1.4 7.8 23.0 0.24 10.3 3.2 3.5 1 1 3 4 4 3 0 Vps53-like, N-terminal Baculo_gp64 PF03273.13 gi|14601261|ref|NP_147796.1| - 1.5 7.6 3.0 11 4.6 0.1 2.4 1 1 1 2 2 2 0 Baculovirus gp64 envelope glycoprotein family Vps51 PF08700.11 gi|14601261|ref|NP_147796.1| - 1.6 8.9 15.7 13 6.0 0.2 5.4 2 1 3 5 5 4 0 Vps51/Vps67 UPF0184 PF03670.13 gi|14601261|ref|NP_147796.1| - 1.6 9.2 24.8 0.56 10.6 0.9 5.9 1 1 5 6 6 6 0 Uncharacterised protein family (UPF0184) MutS_III PF05192.18 gi|14601261|ref|NP_147796.1| - 1.7 8.8 26.0 98 3.1 22.8 3.1 1 1 1 2 2 2 0 MutS domain III TTKRSYEDQ PF10212.9 gi|14601261|ref|NP_147796.1| - 1.7 7.5 20.9 0.15 11.0 1.2 3.0 1 1 1 3 3 3 0 Predicted coiled-coil domain-containing protein CREPT PF16566.5 gi|14601261|ref|NP_147796.1| - 1.9 8.6 20.9 0.12 12.5 5.6 3.5 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour FAM76 PF16046.5 gi|14601261|ref|NP_147796.1| - 2 7.7 15.9 0.9 8.8 5.0 2.8 1 1 2 3 3 3 0 FAM76 protein HlyD_2 PF12700.7 gi|14601261|ref|NP_147796.1| - 2.3 6.8 8.9 3.3 6.4 5.4 2.0 1 1 1 2 2 2 0 HlyD family secretion protein YscO-like PF16789.5 gi|14601261|ref|NP_147796.1| - 2.4 8.1 18.3 1 9.4 5.0 3.1 1 1 2 3 3 2 0 YscO-like protein PTRF_SDPR PF15237.6 gi|14601261|ref|NP_147796.1| - 2.5 7.6 14.5 3.4 7.2 0.1 2.8 2 2 0 2 2 2 0 PTRF/SDPR family DUF4665 PF15679.5 gi|14601261|ref|NP_147796.1| - 2.9 8.6 5.5 61 4.3 0.6 3.3 1 1 3 4 4 3 0 Domain of unknown function (DUF4665) ZnuA PF01297.17 gi|14601261|ref|NP_147796.1| - 2.9 7.2 9.4 44 3.4 9.4 2.6 1 1 0 1 1 1 0 Zinc-uptake complex component A periplasmic L31 PF09784.9 gi|14601261|ref|NP_147796.1| - 2.9 8.3 5.4 23 5.5 2.1 3.6 2 1 2 4 4 2 0 Mitochondrial ribosomal protein L31 MIP-T3_C PF17749.1 gi|14601261|ref|NP_147796.1| - 3.1 7.7 23.0 1.7 8.6 6.7 3.2 1 1 1 3 3 2 0 Microtubule-binding protein MIP-T3 C-terminal region LidA_Long_CC PF18641.1 gi|14601261|ref|NP_147796.1| - 3.2 7.8 15.6 3 7.9 0.2 3.6 2 1 2 4 4 4 0 LidA long coiled-coil domain Swi5 PF07061.11 gi|14601261|ref|NP_147796.1| - 3.5 7.8 21.2 15 5.7 1.9 5.1 1 1 2 3 3 2 0 Swi5 SYCE1 PF15233.6 gi|14601261|ref|NP_147796.1| - 3.9 7.5 24.5 4.3 7.4 15.6 2.6 1 1 1 2 2 2 0 Synaptonemal complex central element protein 1 CCDC-167 PF15188.6 gi|14601261|ref|NP_147796.1| - 4.3 7.8 28.2 5 7.5 3.8 5.0 1 1 3 5 5 4 0 Coiled-coil domain-containing protein 167 Cytochrom_B562 PF07361.11 gi|14601261|ref|NP_147796.1| - 4.4 8.0 15.4 9.1 7.0 3.3 3.3 1 1 2 3 3 3 0 Cytochrome b562 Sec8_exocyst PF04048.14 gi|14601261|ref|NP_147796.1| - 4.5 7.1 16.7 5.1 7.0 4.5 3.9 1 1 3 4 4 4 0 Sec8 exocyst complex component specific domain SpecificRecomb PF10136.9 gi|14601261|ref|NP_147796.1| - 4.7 5.4 14.9 14 3.9 14.9 1.5 1 1 0 1 1 1 0 Site-specific recombinase DMPK_coil PF08826.10 gi|14601261|ref|NP_147796.1| - 4.8 7.4 29.9 0.47 10.6 5.9 4.7 3 1 1 5 5 4 0 DMPK coiled coil domain like GP41 PF00517.17 gi|14601261|ref|NP_147796.1| - 5.1 7.0 9.8 21 5.0 0.6 4.0 1 1 3 4 4 4 0 Retroviral envelope protein Prefoldin_3 PF13758.6 gi|14601261|ref|NP_147796.1| - 5.2 7.2 12.2 1.8 8.7 2.1 4.0 2 1 2 4 4 3 0 Prefoldin subunit Arm-DNA-bind_5 PF17293.2 gi|14601261|ref|NP_147796.1| - 5.5 7.5 5.0 30 5.1 0.6 2.6 2 0 0 2 2 2 0 Arm DNA-binding domain DUF1978 PF09321.10 gi|14601261|ref|NP_147796.1| - 5.8 6.2 14.4 0.31 10.3 5.1 2.7 1 1 2 3 3 2 0 Domain of unknown function (DUF1978) LUC7 PF03194.15 gi|14601261|ref|NP_147796.1| - 5.9 6.5 16.0 3.9 7.0 4.1 2.6 1 1 2 3 3 3 0 LUC7 N_terminus DUF3037 PF11236.8 gi|14601261|ref|NP_147796.1| - 6.1 7.3 11.2 2.9 8.3 2.7 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3037) YvrJ PF12841.7 gi|14601261|ref|NP_147796.1| - 6.7 6.3 7.6 31 4.2 0.0 4.8 5 1 1 6 6 2 0 YvrJ protein family DUF3782 PF12644.7 gi|14601261|ref|NP_147796.1| - 7.5 6.8 12.5 57 4.0 0.2 4.9 2 1 1 4 4 3 0 Protein of unknown function (DUF3782) YkyA PF10368.9 gi|14601261|ref|NP_147796.1| - 8 6.1 21.4 0.12 12.0 7.8 2.6 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein JIP_LZII PF16471.5 gi|14601261|ref|NP_147796.1| - 8.1 6.7 28.3 0.59 10.4 0.5 5.9 2 2 5 7 7 4 0 JNK-interacting protein leucine zipper II HCMV_UL139 PF12507.8 gi|14601261|ref|NP_147796.1| - 8.2 6.8 9.2 1.9e+03 -0.8 9.2 3.1 1 1 0 1 1 0 0 Human Cytomegalovirus UL139 protein Cortex-I_coil PF09304.10 gi|14601261|ref|NP_147796.1| - 8.6 6.6 32.1 0.62 10.3 2.0 4.3 1 1 5 6 6 5 0 Cortexillin I, coiled coil FlxA PF14282.6 gi|14601261|ref|NP_147796.1| - 9.3 6.3 36.9 23 5.0 7.9 4.2 1 1 3 4 4 4 0 FlxA-like protein HALZ PF02183.18 gi|14601261|ref|NP_147796.1| - 9.6 6.5 15.2 28 5.0 0.4 5.4 4 2 1 5 5 3 0 Homeobox associated leucine zipper DUF4714 PF15833.5 gi|14601264|ref|NP_147799.1| - 0.015 15.2 4.2 0.016 15.2 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4714) DUF2070 PF09843.9 gi|14601264|ref|NP_147799.1| - 0.28 9.4 8.4 0.34 9.1 8.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF373 PF04123.13 gi|14601264|ref|NP_147799.1| - 1.5 8.2 10.1 2.2 7.6 10.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) PDDEXK_10 PF07788.11 gi|14601265|ref|NP_147800.1| - 2.5e-26 91.4 1.1 8e-26 89.8 1.1 1.9 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|14601265|ref|NP_147800.1| - 2.4e-22 78.8 0.8 2.4e-22 78.8 0.8 5.0 2 1 3 5 5 4 1 Protein of unknown function (DUF3782) XhlA PF10779.9 gi|14601265|ref|NP_147800.1| - 2.5e-06 27.6 19.4 0.35 11.1 2.3 4.8 1 1 4 5 5 5 5 Haemolysin XhlA BLOC1_2 PF10046.9 gi|14601265|ref|NP_147800.1| - 0.00065 20.0 20.5 0.0042 17.4 2.7 3.6 1 1 3 4 4 4 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vac_Fusion PF02346.16 gi|14601265|ref|NP_147800.1| - 0.0012 18.4 45.5 0.1 12.2 3.5 5.5 2 1 4 7 7 6 5 Chordopoxvirus multifunctional envelope protein A27 Tropomyosin_1 PF12718.7 gi|14601265|ref|NP_147800.1| - 0.0015 18.7 37.3 0.32 11.2 9.3 3.5 1 1 2 3 3 3 2 Tropomyosin like DUF4472 PF14739.6 gi|14601265|ref|NP_147800.1| - 0.0016 19.2 31.9 0.16 12.7 8.7 3.3 1 1 2 3 3 3 3 Domain of unknown function (DUF4472) GAS PF13851.6 gi|14601265|ref|NP_147800.1| - 0.0025 17.2 47.3 0.087 12.2 34.1 2.9 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding EzrA PF06160.12 gi|14601265|ref|NP_147800.1| - 0.0049 15.1 30.4 0.0054 15.0 19.3 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA CLZ PF16526.5 gi|14601265|ref|NP_147800.1| - 0.0056 17.0 49.3 0.084 13.2 11.2 4.7 1 1 4 5 5 5 3 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF16 PF01519.16 gi|14601265|ref|NP_147800.1| - 0.0083 16.6 26.2 0.43 11.1 3.8 3.5 1 1 2 3 3 3 1 Protein of unknown function DUF16 FapA PF03961.13 gi|14601265|ref|NP_147800.1| - 0.014 14.1 27.1 0.09 11.4 11.3 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A Baculo_PEP_C PF04513.12 gi|14601265|ref|NP_147800.1| - 0.018 15.1 0.4 2.2 8.3 0.4 2.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|14601265|ref|NP_147800.1| - 0.019 13.8 33.1 0.35 9.7 21.4 2.5 1 1 1 2 2 2 0 Spc7 kinetochore protein Tropomyosin PF00261.20 gi|14601265|ref|NP_147800.1| - 0.031 13.6 44.6 0.18 11.1 44.6 2.0 1 1 0 1 1 1 0 Tropomyosin TMPIT PF07851.13 gi|14601265|ref|NP_147800.1| - 0.032 13.5 22.8 0.076 12.2 7.6 2.1 1 1 1 2 2 2 0 TMPIT-like protein Jnk-SapK_ap_N PF09744.9 gi|14601265|ref|NP_147800.1| - 0.039 14.2 51.6 0.28 11.4 17.6 2.6 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 ERM PF00769.19 gi|14601265|ref|NP_147800.1| - 0.049 13.4 54.9 0.014 15.2 33.7 2.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Nup54 PF13874.6 gi|14601265|ref|NP_147800.1| - 0.06 13.4 43.2 0.41 10.7 20.1 3.3 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 ADIP PF11559.8 gi|14601265|ref|NP_147800.1| - 0.063 13.4 42.7 0.073 13.2 12.3 3.3 1 1 3 4 4 4 0 Afadin- and alpha -actinin-Binding Occludin_ELL PF07303.13 gi|14601265|ref|NP_147800.1| - 0.075 13.8 33.0 0.33 11.7 11.9 3.5 1 1 3 4 4 4 0 Occludin homology domain SKA2 PF16740.5 gi|14601265|ref|NP_147800.1| - 0.14 12.0 35.0 0.38 10.5 7.3 4.1 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 2 Myosin_tail_1 PF01576.19 gi|14601265|ref|NP_147800.1| - 0.18 9.5 49.4 0.26 9.0 49.4 1.1 1 0 0 1 1 1 0 Myosin tail DUF1465 PF07323.12 gi|14601265|ref|NP_147800.1| - 0.23 11.3 31.3 16 5.3 7.4 4.4 1 1 3 4 4 4 0 Protein of unknown function (DUF1465) DUF724 PF05266.14 gi|14601265|ref|NP_147800.1| - 0.23 11.2 29.5 0.17 11.7 10.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF3552 PF12072.8 gi|14601265|ref|NP_147800.1| - 0.28 10.6 53.5 0.51 9.7 19.4 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) BRE1 PF08647.11 gi|14601265|ref|NP_147800.1| - 0.31 11.1 29.9 0.19 11.8 2.0 4.1 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase Troponin PF00992.20 gi|14601265|ref|NP_147800.1| - 0.33 11.2 45.9 1.1 9.6 17.2 3.2 1 1 2 3 3 3 0 Troponin DUF1664 PF07889.12 gi|14601265|ref|NP_147800.1| - 0.4 10.7 19.8 1.8 8.6 6.6 3.6 2 1 1 4 4 3 0 Protein of unknown function (DUF1664) HemX PF04375.14 gi|14601265|ref|NP_147800.1| - 0.46 9.7 24.2 1.8e+04 -5.4 24.2 2.4 1 1 0 1 1 0 0 HemX, putative uroporphyrinogen-III C-methyltransferase DASH_Dam1 PF08653.10 gi|14601265|ref|NP_147800.1| - 0.47 10.3 21.5 6.2 6.7 0.6 5.9 1 1 7 8 8 8 0 DASH complex subunit Dam1 SlyX PF04102.12 gi|14601265|ref|NP_147800.1| - 0.82 10.3 52.5 1.4 9.5 11.6 4.0 2 1 0 3 3 3 0 SlyX TMF_DNA_bd PF12329.8 gi|14601265|ref|NP_147800.1| - 1.2 9.1 35.6 1.2 9.1 5.2 3.5 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding Exonuc_VII_L PF02601.15 gi|14601265|ref|NP_147800.1| - 1.3 8.5 35.2 1.1 8.8 16.8 2.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit ABC_tran_CTD PF16326.5 gi|14601265|ref|NP_147800.1| - 1.4 9.2 51.9 0.17 12.2 9.7 4.2 1 1 2 3 3 3 0 ABC transporter C-terminal domain DUF4795 PF16043.5 gi|14601265|ref|NP_147800.1| - 1.5 8.4 24.6 21 4.6 15.9 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Leu_zip PF15294.6 gi|14601265|ref|NP_147800.1| - 1.9 8.0 38.4 5.6 6.4 22.8 2.4 1 1 1 2 2 2 0 Leucine zipper Phage_GPO PF05929.11 gi|14601265|ref|NP_147800.1| - 2.1 7.9 17.9 4.4e+02 0.3 17.9 2.4 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Fib_alpha PF08702.10 gi|14601265|ref|NP_147800.1| - 2.9 8.1 23.7 20 5.4 12.0 3.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|14601265|ref|NP_147800.1| - 3.6 7.6 15.8 0.8 9.7 1.8 3.7 1 1 2 3 3 3 0 Laminin Domain II DUF4988 PF16378.5 gi|14601265|ref|NP_147800.1| - 3.6 7.2 5.8 57 3.3 1.0 3.9 1 1 2 3 3 3 0 Domain of unknown function Prominin PF05478.11 gi|14601265|ref|NP_147800.1| - 5 4.9 14.8 0.51 8.2 3.5 2.1 1 1 1 2 2 2 0 Prominin Prefoldin_2 PF01920.20 gi|14601265|ref|NP_147800.1| - 5.7 6.9 42.0 5.6 7.0 3.0 5.0 1 1 5 6 6 6 0 Prefoldin subunit bZIP_1 PF00170.21 gi|14601265|ref|NP_147800.1| - 9.2 6.5 46.7 1.6 8.9 7.3 5.2 1 1 3 4 4 4 0 bZIP transcription factor FlaC_arch PF05377.11 gi|14601265|ref|NP_147800.1| - 9.6 6.7 20.0 2.3 8.7 0.9 4.7 2 1 3 5 5 4 0 Flagella accessory protein C (FlaC) PALP PF00291.25 gi|118431373|ref|NP_147802.2| - 4.3e-60 203.6 0.7 1.3e-59 202.0 0.7 1.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme SDH_alpha PF03313.15 gi|118431373|ref|NP_147802.2| - 0.3 10.7 0.9 0.46 10.1 0.0 1.7 3 0 0 3 3 3 0 Serine dehydratase alpha chain Cys_Met_Meta_PP PF01053.20 gi|14601268|ref|NP_147803.1| - 5.2e-153 509.1 0.0 5.8e-153 508.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|14601268|ref|NP_147803.1| - 6.6e-09 35.4 0.0 9.3e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|14601268|ref|NP_147803.1| - 8.9e-07 28.2 0.0 3.3e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|14601268|ref|NP_147803.1| - 9e-07 28.5 0.0 1.5e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|14601268|ref|NP_147803.1| - 0.0021 17.4 0.0 0.0045 16.3 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|14601268|ref|NP_147803.1| - 0.061 11.8 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Methionine gamma-lyase CRISPR_Cas6 PF10040.9 gi|118431374|ref|NP_147804.2| - 3.8e-11 43.5 0.3 6.3e-11 42.8 0.3 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas_Csa4 PF09703.10 gi|14601271|ref|NP_147806.1| - 6.6e-119 397.4 0.0 7.7e-119 397.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) DUF4131 PF13567.6 gi|14601271|ref|NP_147806.1| - 0.056 13.1 0.1 8 6.1 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) ArnB_C PF18677.1 gi|14601271|ref|NP_147806.1| - 0.18 12.0 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 Archaellum regulatory network B, C-terminal domain HD_6 PF18019.1 gi|14601272|ref|NP_147807.1| - 0.0025 18.0 0.0 0.0034 17.5 0.0 1.3 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|14601272|ref|NP_147807.1| - 0.084 13.1 0.1 0.37 11.0 0.0 2.2 2 1 0 2 2 2 0 HD domain DEAD PF00270.29 gi|14601273|ref|NP_147808.1| - 3.1e-20 72.7 0.0 7e-20 71.5 0.0 1.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|14601273|ref|NP_147808.1| - 2.2e-05 24.8 0.1 4.3e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|14601273|ref|NP_147808.1| - 0.0042 17.1 0.0 0.01 15.9 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit FliX PF10768.9 gi|118431375|ref|NP_147810.2| - 0.026 15.0 0.0 0.046 14.2 0.0 1.4 1 0 0 1 1 1 0 Class II flagellar assembly regulator DevR PF01905.16 gi|14601276|ref|NP_147811.1| - 4.2e-70 235.9 0.0 4.9e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF2785 PF10978.8 gi|118431376|ref|NP_147812.2| - 0.041 13.7 0.0 0.05 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) MarR PF01047.22 gi|118431377|ref|NP_147813.2| - 0.00019 21.3 0.2 0.00031 20.6 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|118431377|ref|NP_147813.2| - 0.00026 20.8 0.6 0.00054 19.8 0.6 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|118431377|ref|NP_147813.2| - 0.00056 19.7 0.3 0.0013 18.6 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|118431377|ref|NP_147813.2| - 0.0015 18.8 0.2 0.0027 18.0 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HxlR PF01638.17 gi|118431377|ref|NP_147813.2| - 0.0026 17.6 0.2 0.0057 16.5 0.2 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|118431377|ref|NP_147813.2| - 0.0074 16.8 0.5 0.014 15.9 0.5 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|118431377|ref|NP_147813.2| - 0.034 14.1 0.3 0.068 13.2 0.3 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Carbpep_Y_N PF05388.11 gi|118431377|ref|NP_147813.2| - 0.054 14.0 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 Carboxypeptidase Y pro-peptide HTH_IclR PF09339.10 gi|118431377|ref|NP_147813.2| - 0.063 13.1 0.7 0.14 12.0 0.7 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dimerisation2 PF16864.5 gi|118431377|ref|NP_147813.2| - 0.099 12.6 0.1 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 Dimerisation domain Cas_Cas4 PF01930.17 gi|118431378|ref|NP_147814.2| - 2.2e-10 40.9 0.0 5.6e-10 39.6 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|118431378|ref|NP_147814.2| - 4.1e-08 33.4 0.0 6.1e-07 29.6 0.0 2.0 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|118431378|ref|NP_147814.2| - 0.0011 18.4 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 CRISPR_Cas2 PF09827.9 gi|118431379|ref|YP_874882.1| - 9.9e-14 51.3 0.1 1.2e-13 51.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 CutC PF03932.14 gi|118431379|ref|YP_874882.1| - 0.026 14.0 0.0 0.028 13.9 0.0 1.0 1 0 0 1 1 1 0 CutC family DUF4385 PF14328.6 gi|118431379|ref|YP_874882.1| - 0.055 13.5 0.1 0.06 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4385) DUF4616 PF15394.6 gi|118431379|ref|YP_874882.1| - 0.14 11.1 0.0 0.16 10.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4616) Cas_Cas1 PF01867.16 gi|118431380|ref|NP_147815.2| - 4.1e-59 200.1 0.0 4.9e-59 199.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|118431381|ref|NP_147816.2| - 1e-88 297.5 0.0 1.1e-61 208.8 0.0 2.0 1 1 1 2 2 2 2 CRISPR-associated exonuclease Csa1 Peptidase_C47 PF05543.13 gi|118431382|ref|YP_874883.1| - 0.088 12.4 0.0 0.095 12.3 0.0 1.1 1 0 0 1 1 1 0 Staphopain peptidase C47 Hydrolase_4 PF12146.8 gi|118431383|ref|NP_147820.2| - 1.5e-09 37.5 0.2 3.3e-09 36.4 0.2 1.6 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|118431383|ref|NP_147820.2| - 2.9e-06 27.1 0.4 6.3e-06 26.0 0.4 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|118431383|ref|NP_147820.2| - 0.0079 14.9 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) DUF2048 PF09752.9 gi|118431383|ref|NP_147820.2| - 0.068 12.3 2.9 0.1 11.6 2.9 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 Peptidase_S15 PF02129.18 gi|118431383|ref|NP_147820.2| - 0.12 11.9 0.5 0.24 11.0 0.1 1.6 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|118431383|ref|NP_147820.2| - 0.39 10.6 1.0 0.66 9.8 1.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal ADH_N PF08240.12 gi|118431384|ref|NP_147821.2| - 3.7e-26 91.1 0.0 6.1e-26 90.4 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|118431384|ref|NP_147821.2| - 1.9e-13 50.6 0.0 2.8e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|118431384|ref|NP_147821.2| - 9.5e-06 25.2 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|118431384|ref|NP_147821.2| - 2.5e-05 25.3 0.0 3.9e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase IlvN PF07991.12 gi|118431384|ref|NP_147821.2| - 0.043 13.4 0.0 0.077 12.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AAT PF03417.16 gi|118431384|ref|NP_147821.2| - 0.26 10.9 0.0 0.48 10.1 0.0 1.4 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase ABC_tran PF00005.27 gi|14601291|ref|NP_147826.1| - 5.5e-32 111.2 0.0 9.7e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14601291|ref|NP_147826.1| - 7.6e-11 42.4 0.3 4.2e-06 26.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|14601291|ref|NP_147826.1| - 4.6e-06 26.2 0.0 0.0037 16.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|14601291|ref|NP_147826.1| - 2e-05 23.8 0.4 0.029 13.4 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|14601291|ref|NP_147826.1| - 0.00052 19.9 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|14601291|ref|NP_147826.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|14601291|ref|NP_147826.1| - 0.0016 18.8 2.8 0.0077 16.6 2.8 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|14601291|ref|NP_147826.1| - 0.0059 16.3 1.8 0.008 15.9 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.6 gi|14601291|ref|NP_147826.1| - 0.0091 16.5 0.0 0.023 15.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|14601291|ref|NP_147826.1| - 0.0093 16.2 0.3 0.045 14.0 0.0 2.3 3 1 0 3 3 3 1 AAA domain cobW PF02492.19 gi|14601291|ref|NP_147826.1| - 0.012 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|14601291|ref|NP_147826.1| - 0.027 14.7 0.5 0.15 12.3 0.0 2.4 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|14601291|ref|NP_147826.1| - 0.031 14.2 0.0 0.58 10.1 0.0 2.2 2 0 0 2 2 2 0 NTPase ATPase_2 PF01637.18 gi|14601291|ref|NP_147826.1| - 0.043 13.7 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|14601291|ref|NP_147826.1| - 0.044 13.7 0.2 0.13 12.1 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|14601291|ref|NP_147826.1| - 0.051 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|14601291|ref|NP_147826.1| - 0.051 13.5 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|14601291|ref|NP_147826.1| - 0.054 13.1 3.6 0.19 11.3 0.2 2.4 2 1 0 2 2 2 0 AAA domain MobB PF03205.14 gi|14601291|ref|NP_147826.1| - 0.099 12.5 0.1 0.48 10.3 0.0 2.3 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|14601291|ref|NP_147826.1| - 0.12 11.6 0.5 0.46 9.6 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.21 gi|14601291|ref|NP_147826.1| - 0.14 11.6 0.0 0.34 10.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|14601291|ref|NP_147826.1| - 0.14 12.4 0.2 0.71 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|14601291|ref|NP_147826.1| - 0.18 10.6 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) MMR_HSR1 PF01926.23 gi|14601291|ref|NP_147826.1| - 0.19 11.8 0.1 0.49 10.5 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|118431385|ref|NP_147827.2| - 6.1e-25 88.3 0.0 8.7e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431385|ref|NP_147827.2| - 4.7e-16 59.5 0.0 1.7e-08 34.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431385|ref|NP_147827.2| - 4.2e-05 23.1 0.0 0.2 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|118431385|ref|NP_147827.2| - 0.0052 16.5 0.0 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|118431385|ref|NP_147827.2| - 0.0069 16.9 0.0 0.01 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|118431385|ref|NP_147827.2| - 0.0078 16.5 0.0 0.018 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|118431385|ref|NP_147827.2| - 0.0097 15.5 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|118431385|ref|NP_147827.2| - 0.018 15.4 0.0 0.024 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|118431385|ref|NP_147827.2| - 0.04 14.1 0.0 0.071 13.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|118431385|ref|NP_147827.2| - 0.062 13.1 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|118431385|ref|NP_147827.2| - 0.063 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|118431385|ref|NP_147827.2| - 0.087 11.8 0.2 0.14 11.2 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|118431385|ref|NP_147827.2| - 0.092 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|118431385|ref|NP_147827.2| - 0.11 12.0 0.1 0.44 10.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|118431385|ref|NP_147827.2| - 0.18 11.7 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|118431385|ref|NP_147827.2| - 0.2 10.7 0.1 0.39 9.7 0.0 1.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Thymidylate_kin PF02223.17 gi|118431385|ref|NP_147827.2| - 0.24 11.1 0.0 0.4 10.3 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase ABC2_membrane_3 PF12698.7 gi|14601293|ref|NP_147828.1| - 6.7e-13 48.5 6.1 1e-12 47.8 6.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|14601293|ref|NP_147828.1| - 3.6e-06 26.5 16.1 1.8e-05 24.2 16.1 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|14601293|ref|NP_147828.1| - 0.072 12.6 0.2 0.072 12.6 0.2 2.6 3 0 0 3 3 3 0 ABC-2 family transporter protein Hemerythrin PF01814.23 gi|118431386|ref|NP_147829.2| - 1.1e-20 74.5 8.0 1.1e-20 74.5 8.0 1.4 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain Lactamase_B PF00753.27 gi|14601295|ref|NP_147830.1| - 1.1e-28 100.6 5.1 1.4e-28 100.3 5.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|14601295|ref|NP_147830.1| - 1e-06 28.4 0.2 1.3e-06 28.0 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|14601295|ref|NP_147830.1| - 0.088 12.7 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Cation_efflux PF01545.21 gi|14601296|ref|NP_147831.1| - 2.9e-13 50.0 10.9 4.9e-13 49.3 10.9 1.4 1 1 0 1 1 1 1 Cation efflux family 2-Hacid_dh_C PF02826.19 gi|118431387|ref|NP_147833.2| - 9.8e-37 126.0 0.0 1.3e-36 125.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|118431387|ref|NP_147833.2| - 8.9e-16 57.8 0.0 1.1e-15 57.5 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DAO PF01266.24 gi|118431388|ref|NP_147834.2| - 1.9e-41 142.8 1.8 2.3e-41 142.6 1.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|118431388|ref|NP_147834.2| - 2.9e-05 23.5 0.2 0.0072 15.6 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|118431388|ref|NP_147834.2| - 0.00038 20.6 1.8 0.00094 19.4 1.8 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|118431388|ref|NP_147834.2| - 0.00098 18.3 2.4 0.0014 17.8 2.4 1.5 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|118431388|ref|NP_147834.2| - 0.0012 18.1 0.3 0.0024 17.1 0.3 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|118431388|ref|NP_147834.2| - 0.0052 17.3 0.6 0.41 11.2 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|118431388|ref|NP_147834.2| - 0.11 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|118431388|ref|NP_147834.2| - 0.14 10.8 0.2 1.3 7.7 0.4 2.0 2 0 0 2 2 2 0 HI0933-like protein NTP_transf_2 PF01909.23 gi|118431389|ref|NP_147835.2| - 6.4e-14 52.0 0.0 9e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|118431389|ref|NP_147835.2| - 1e-06 28.7 0.0 1.7e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|118431389|ref|NP_147835.2| - 0.0012 19.0 0.0 0.0017 18.6 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase beta palm Cas_Cas5d PF09704.10 gi|118431389|ref|NP_147835.2| - 0.034 14.0 0.1 0.047 13.6 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) BolA PF01722.18 gi|118431389|ref|NP_147835.2| - 0.12 12.7 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 BolA-like protein HEPN PF05168.14 gi|118431390|ref|NP_147836.2| - 2.8e-34 117.8 0.1 3.3e-34 117.5 0.1 1.0 1 0 0 1 1 1 1 HEPN domain Enolase_like_N PF18374.1 gi|118431390|ref|NP_147836.2| - 0.028 13.8 0.6 1.6 8.2 0.2 2.4 2 0 0 2 2 2 0 Enolase N-terminal domain-like TPR_12 PF13424.6 gi|118431390|ref|NP_147836.2| - 0.35 11.2 2.7 5 7.5 0.1 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat QRPTase_C PF01729.19 gi|118431391|ref|NP_147837.2| - 2.3e-24 86.0 0.0 3.3e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|118431391|ref|NP_147837.2| - 1.1e-05 25.7 0.0 1.9e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|118431391|ref|NP_147837.2| - 3.1e-05 24.0 0.0 7.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|118431391|ref|NP_147837.2| - 0.0082 16.5 0.0 0.031 14.6 0.0 1.9 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BtpA PF03437.15 gi|118431391|ref|NP_147837.2| - 0.17 11.3 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 BtpA family Beta_elim_lyase PF01212.21 gi|14601303|ref|NP_147838.1| - 8.4e-86 287.9 0.0 9.8e-86 287.7 0.0 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|14601303|ref|NP_147838.1| - 0.018 14.3 0.0 0.038 13.3 0.0 1.6 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|14601303|ref|NP_147838.1| - 0.078 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SepSecS PF05889.13 gi|14601303|ref|NP_147838.1| - 0.11 11.2 0.0 0.55 8.9 0.0 2.1 3 0 0 3 3 3 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Oleosin PF01277.17 gi|118431392|ref|YP_874884.1| - 0.012 15.4 0.5 1.5 8.6 0.2 2.0 1 1 1 2 2 2 0 Oleosin Metallophos_2 PF12850.7 gi|14601304|ref|NP_147839.1| - 0.00016 21.9 0.0 0.00022 21.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Herpes_pp38 PF04846.13 gi|14601307|ref|NP_147842.1| - 0.0064 16.4 0.6 0.0064 16.4 0.6 2.1 1 1 1 2 2 2 1 Herpesvirus pp38 phosphoprotein Acyl_transf_3 PF01757.22 gi|14601307|ref|NP_147842.1| - 0.46 9.5 16.5 0.59 9.1 16.5 1.1 1 0 0 1 1 1 0 Acyltransferase family Yip1 PF04893.17 gi|14601307|ref|NP_147842.1| - 0.84 9.3 24.7 1.1 8.9 24.7 1.1 1 0 0 1 1 1 0 Yip1 domain RibD_C PF01872.17 gi|118431394|ref|NP_147843.2| - 2.7e-38 131.8 0.0 2.9e-38 131.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF834 PF05754.14 gi|118431394|ref|NP_147843.2| - 1.5 8.9 8.4 7.3 6.7 0.4 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF834) EAP30 PF04157.16 gi|118431395|ref|YP_874886.1| - 0.11 11.7 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family HD PF01966.22 gi|14601310|ref|NP_147845.1| - 0.00011 22.4 3.8 0.0021 18.3 3.8 2.9 1 1 0 1 1 1 1 HD domain Hist_deacetyl PF00850.19 gi|118431397|ref|NP_147847.2| - 8.1e-39 133.9 0.0 1.1e-38 133.4 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain AAA_31 PF13614.6 gi|118431397|ref|NP_147847.2| - 0.16 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|118431397|ref|NP_147847.2| - 0.19 12.0 0.0 0.4 10.9 0.0 1.5 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Myco_19_kDa PF05481.12 gi|14601313|ref|NP_147848.1| - 0.59 10.4 3.6 1.6 9.0 0.1 3.2 4 0 0 4 4 4 0 Mycobacterium 19 kDa lipoprotein antigen Molybdopterin PF00384.22 gi|118431398|ref|NP_147849.2| - 5.8e-133 444.0 0.0 7.1e-133 443.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|118431398|ref|NP_147849.2| - 2.8e-19 69.2 0.1 5.3e-19 68.3 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|118431398|ref|NP_147849.2| - 0.0021 17.8 3.9 0.0039 17.0 3.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|118431399|ref|NP_147850.2| - 4.3e-36 123.0 7.9 4.3e-36 123.0 7.9 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.6 gi|118431399|ref|NP_147850.2| - 3e-24 84.5 0.0 4.8e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_2 PF12797.7 gi|118431399|ref|NP_147850.2| - 3.8e-06 26.7 15.6 0.043 13.9 1.2 3.8 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|118431399|ref|NP_147850.2| - 4.6e-06 27.1 18.2 0.00018 22.0 5.6 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|118431399|ref|NP_147850.2| - 5.3e-05 23.3 20.5 0.00093 19.3 7.7 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|118431399|ref|NP_147850.2| - 0.00042 20.4 20.2 0.0031 17.7 5.9 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|118431399|ref|NP_147850.2| - 0.0007 20.1 6.4 0.032 14.8 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|118431399|ref|NP_147850.2| - 0.0011 19.7 7.1 0.063 14.0 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|118431399|ref|NP_147850.2| - 0.0041 17.1 14.6 1.9 8.7 0.2 3.7 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4 PF00037.27 gi|118431399|ref|NP_147850.2| - 0.062 13.1 19.3 0.11 12.4 2.1 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|118431399|ref|NP_147850.2| - 0.14 12.3 17.9 0.14 12.3 1.4 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|118431399|ref|NP_147850.2| - 0.46 11.1 16.5 1.3 9.6 0.2 3.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|118431399|ref|NP_147850.2| - 0.61 10.6 0.0 0.61 10.6 0.0 3.5 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|118431399|ref|NP_147850.2| - 2.2 8.4 6.6 3.2 7.9 1.3 3.0 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster EB_dh PF09459.10 gi|14601316|ref|NP_147851.1| - 4.7e-39 134.9 0.0 1e-38 133.7 0.0 1.5 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase TMEM191C PF15194.6 gi|14601317|ref|NP_147852.1| - 5.9 7.1 8.7 5.1 7.3 0.8 2.6 1 1 0 2 2 2 0 TMEM191C family Nitrate_red_del PF02613.15 gi|118431400|ref|NP_147854.2| - 6.5e-11 42.4 0.2 8.7e-11 42.0 0.2 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit Phage_rep_org_N PF09681.10 gi|118431400|ref|NP_147854.2| - 0.098 12.6 0.0 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) ABC_tran PF00005.27 gi|118431401|ref|NP_147855.2| - 7.6e-31 107.5 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431401|ref|NP_147855.2| - 8.9e-18 65.1 0.1 1.4e-08 34.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431401|ref|NP_147855.2| - 1.5e-06 27.9 0.1 1.5e-05 24.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|118431401|ref|NP_147855.2| - 4e-06 27.5 0.0 6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|118431401|ref|NP_147855.2| - 0.00013 21.7 0.1 0.00023 20.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|118431401|ref|NP_147855.2| - 0.00015 21.6 0.1 0.00033 20.5 0.0 1.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|118431401|ref|NP_147855.2| - 0.0004 20.8 0.1 0.00062 20.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|118431401|ref|NP_147855.2| - 0.00044 20.5 0.6 0.0068 16.7 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|118431401|ref|NP_147855.2| - 0.0014 18.4 0.1 0.0038 17.0 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118431401|ref|NP_147855.2| - 0.0017 18.8 0.0 0.0028 18.1 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|118431401|ref|NP_147855.2| - 0.0062 16.5 0.1 0.01 15.7 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|118431401|ref|NP_147855.2| - 0.0067 16.0 0.1 0.017 14.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|118431401|ref|NP_147855.2| - 0.013 14.3 0.1 0.082 11.7 0.2 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class TsaE PF02367.17 gi|118431401|ref|NP_147855.2| - 0.039 14.0 0.1 0.091 12.8 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|118431401|ref|NP_147855.2| - 0.049 13.1 0.0 0.33 10.4 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein DUF2813 PF11398.8 gi|118431401|ref|NP_147855.2| - 0.062 12.5 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_5 PF07728.14 gi|118431401|ref|NP_147855.2| - 0.066 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|118431401|ref|NP_147855.2| - 0.077 13.2 0.2 0.39 11.0 0.1 2.2 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|118431401|ref|NP_147855.2| - 0.092 13.0 0.6 0.19 11.9 0.3 1.7 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|118431401|ref|NP_147855.2| - 0.097 12.8 0.0 0.26 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|118431401|ref|NP_147855.2| - 0.099 11.5 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PduV-EutP PF10662.9 gi|118431401|ref|NP_147855.2| - 0.099 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|118431401|ref|NP_147855.2| - 0.1 12.2 0.3 0.22 11.1 0.3 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|118431401|ref|NP_147855.2| - 0.1 12.5 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|118431401|ref|NP_147855.2| - 0.16 11.6 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peripla_BP_6 PF13458.6 gi|118431402|ref|NP_147857.2| - 4.1e-65 220.7 0.2 5.1e-65 220.4 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein AidB_N PF18158.1 gi|118431402|ref|NP_147857.2| - 0.09 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Adaptive response protein AidB N-terminal domain BPD_transp_2 PF02653.16 gi|118431403|ref|NP_147858.2| - 2e-32 112.4 38.1 2e-32 112.4 38.1 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component TMEM237 PF15383.6 gi|118431403|ref|NP_147858.2| - 5 6.1 6.0 1.2 8.2 0.3 2.6 2 1 1 3 3 3 0 Transmembrane protein 237 BPD_transp_2 PF02653.16 gi|14601324|ref|NP_147859.1| - 1.1e-26 93.6 36.6 1.3e-26 93.4 36.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component AMP-binding PF00501.28 gi|14601325|ref|NP_147860.1| - 5.3e-91 305.3 0.0 6.9e-91 304.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ABC_tran PF00005.27 gi|14601326|ref|NP_147861.1| - 5.5e-30 104.7 0.0 7.4e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|14601326|ref|NP_147861.1| - 4.5e-08 32.8 0.9 7.1e-08 32.2 0.0 1.8 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|14601326|ref|NP_147861.1| - 2.4e-06 27.6 0.7 0.00093 19.1 0.4 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|14601326|ref|NP_147861.1| - 0.0004 21.0 0.1 0.00061 20.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|14601326|ref|NP_147861.1| - 0.0029 17.3 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|14601326|ref|NP_147861.1| - 0.0051 16.9 1.0 0.038 14.1 1.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|14601326|ref|NP_147861.1| - 0.0064 16.2 0.0 0.0085 15.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|14601326|ref|NP_147861.1| - 0.0093 15.4 0.5 0.092 12.2 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|14601326|ref|NP_147861.1| - 0.014 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|14601326|ref|NP_147861.1| - 0.036 14.5 0.0 0.068 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|14601326|ref|NP_147861.1| - 0.044 13.5 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain KdpD PF02702.17 gi|14601326|ref|NP_147861.1| - 0.094 12.2 1.0 0.2 11.1 1.0 1.6 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain cobW PF02492.19 gi|14601326|ref|NP_147861.1| - 0.098 12.2 2.0 0.56 9.8 0.1 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.25 gi|14601326|ref|NP_147861.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|14601326|ref|NP_147861.1| - 0.14 12.6 0.2 5.5 7.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.23 gi|14601326|ref|NP_147861.1| - 0.14 12.2 0.6 1 9.4 0.6 2.0 1 1 0 1 1 1 0 Dynamin family ABC_ATPase PF09818.9 gi|14601326|ref|NP_147861.1| - 0.17 10.7 2.9 4.7 5.9 0.5 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AMP-binding PF00501.28 gi|14601327|ref|NP_147862.1| - 2.8e-57 194.2 0.0 3.6e-57 193.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|14601327|ref|NP_147862.1| - 2.9e-09 37.7 0.2 6.2e-09 36.7 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4129 PF13559.6 gi|118431404|ref|NP_147863.2| - 8.4e-07 29.2 6.8 8.4e-07 29.2 6.8 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4350 PF14258.6 gi|118431405|ref|YP_874887.1| - 0.13 12.7 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) TetR_C_31 PF17940.1 gi|118431405|ref|YP_874887.1| - 0.76 10.0 8.9 1.2 9.4 4.8 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain AAA_3 PF07726.11 gi|14601331|ref|NP_147866.1| - 6e-64 213.8 0.0 9e-64 213.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|14601331|ref|NP_147866.1| - 6.8e-17 61.8 0.0 1.1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|14601331|ref|NP_147866.1| - 1.2e-15 57.1 4.2 1.7e-15 56.6 0.1 2.6 3 0 0 3 3 3 1 AAA lid domain AAA PF00004.29 gi|14601331|ref|NP_147866.1| - 1.3e-06 28.9 0.0 2.5e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|14601331|ref|NP_147866.1| - 4.4e-06 26.0 0.0 6.9e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|14601331|ref|NP_147866.1| - 3.9e-05 23.4 0.0 0.00037 20.3 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|14601331|ref|NP_147866.1| - 5e-05 23.1 0.0 0.00045 20.0 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|14601331|ref|NP_147866.1| - 0.00019 21.9 0.2 0.00047 20.6 0.2 1.7 1 1 1 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|14601331|ref|NP_147866.1| - 0.0002 20.8 1.2 0.023 14.1 0.4 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|14601331|ref|NP_147866.1| - 0.047 13.4 0.6 0.27 10.9 0.6 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|14601331|ref|NP_147866.1| - 0.071 13.7 0.0 0.12 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase_C PF13335.6 gi|14601331|ref|NP_147866.1| - 0.15 12.7 0.2 0.49 11.1 0.0 1.9 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_33 PF13671.6 gi|14601331|ref|NP_147866.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|14601331|ref|NP_147866.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF58 PF01882.18 gi|118431406|ref|NP_147867.2| - 3.9e-23 81.5 0.0 8.9e-23 80.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 Kinocilin PF15033.6 gi|118431406|ref|NP_147867.2| - 0.05 13.3 0.3 2.4 7.8 0.6 2.3 2 0 0 2 2 2 0 Kinocilin protein AAA_33 PF13671.6 gi|14601334|ref|NP_147869.1| - 0.11 12.7 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF1947 PF09183.10 gi|118431408|ref|YP_874888.1| - 0.033 14.5 1.2 0.039 14.2 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) tRNA_anti-codon PF01336.25 gi|118431409|ref|NP_147870.2| - 8.2e-10 38.5 0.3 1.2e-09 38.0 0.3 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|118431409|ref|NP_147870.2| - 0.011 15.7 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|118431409|ref|NP_147870.2| - 0.02 14.6 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 PS-DH PF14765.6 gi|118431409|ref|NP_147870.2| - 0.058 12.6 0.0 0.07 12.3 0.0 1.0 1 0 0 1 1 1 0 Polyketide synthase dehydratase Acetyltransf_1 PF00583.25 gi|14601336|ref|NP_147871.1| - 3.3e-14 53.1 0.0 4.8e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|14601336|ref|NP_147871.1| - 4.2e-07 30.7 0.0 5.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|14601336|ref|NP_147871.1| - 1.7e-05 25.1 0.0 4.7e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|14601336|ref|NP_147871.1| - 2.3e-05 24.3 0.0 4.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|14601336|ref|NP_147871.1| - 0.00019 21.6 0.0 0.00022 21.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|14601336|ref|NP_147871.1| - 0.00067 19.3 0.0 0.00093 18.8 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_10 PF13673.7 gi|14601336|ref|NP_147871.1| - 0.00092 19.2 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|118431410|ref|NP_147872.2| - 9.4e-06 26.1 0.0 4.7e-05 23.8 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Hydantoinase_A PF01968.18 gi|118431411|ref|NP_147873.2| - 1.4e-97 326.5 1.0 4.7e-96 321.5 0.1 2.1 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|118431411|ref|NP_147873.2| - 4.4e-47 160.1 0.0 1.4e-46 158.4 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|118431411|ref|NP_147873.2| - 0.003 18.0 0.9 0.021 15.2 0.1 2.3 2 0 0 2 2 2 1 Cell division protein FtsA BcrAD_BadFG PF01869.20 gi|118431411|ref|NP_147873.2| - 0.0087 15.6 0.0 0.7 9.3 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|118431411|ref|NP_147873.2| - 0.017 13.8 1.1 0.78 8.3 0.1 2.2 2 0 0 2 2 2 0 MutL protein Hydantoinase_B PF02538.14 gi|14601339|ref|NP_147874.1| - 1.4e-185 617.6 0.4 1.6e-185 617.5 0.4 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase ABM PF03992.16 gi|14601340|ref|NP_147875.1| - 7e-17 61.3 1.8 8.6e-17 61.0 1.8 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Dehydratase_hem PF13816.6 gi|14601340|ref|NP_147875.1| - 0.0026 17.2 0.0 0.0028 17.1 0.0 1.0 1 0 0 1 1 1 1 Haem-containing dehydratase DUF1330 PF07045.11 gi|14601340|ref|NP_147875.1| - 0.003 17.9 1.0 0.0095 16.3 1.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1330) DUF3291 PF11695.8 gi|14601340|ref|NP_147875.1| - 0.011 15.5 0.1 0.013 15.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3291) Peptidase_M42 PF05343.14 gi|118431412|ref|NP_147876.2| - 1.1e-88 297.1 0.0 1.2e-88 296.9 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|118431412|ref|NP_147876.2| - 2.9e-11 43.4 0.0 4.7e-09 36.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|118431412|ref|NP_147876.2| - 8.4e-11 42.0 0.1 2.4e-10 40.5 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|118431412|ref|NP_147876.2| - 0.00061 18.7 0.0 0.00081 18.3 0.0 1.1 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) DUF3247 PF11607.8 gi|118431412|ref|NP_147876.2| - 0.11 12.8 0.1 0.42 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3247) Amino_oxidase PF01593.24 gi|14602204|ref|NP_147877.1| - 9.7e-19 68.0 3.6 1.1e-17 64.5 3.6 2.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|14602204|ref|NP_147877.1| - 3.1e-11 43.4 0.2 3.1e-11 43.4 0.2 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|14602204|ref|NP_147877.1| - 6.5e-10 39.1 10.3 1.2e-08 35.0 10.0 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|14602204|ref|NP_147877.1| - 2.5e-09 36.7 6.5 3e-06 26.6 0.9 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|14602204|ref|NP_147877.1| - 2.7e-09 36.9 1.1 7.3e-09 35.5 0.3 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|14602204|ref|NP_147877.1| - 6.3e-07 28.9 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|14602204|ref|NP_147877.1| - 6.6e-07 28.4 0.3 0.00013 20.8 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|14602204|ref|NP_147877.1| - 1e-06 28.1 0.5 2.1e-05 23.8 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|14602204|ref|NP_147877.1| - 1.3e-05 24.6 0.2 0.00015 21.1 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|14602204|ref|NP_147877.1| - 0.00011 22.7 1.1 0.00085 19.8 0.8 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|14602204|ref|NP_147877.1| - 0.00014 21.3 1.4 0.00014 21.3 1.4 1.6 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|14602204|ref|NP_147877.1| - 0.0054 15.8 0.0 0.0097 15.0 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|14602204|ref|NP_147877.1| - 0.013 14.3 0.8 0.025 13.4 0.1 1.7 2 0 0 2 2 2 0 Tryptophan halogenase GMC_oxred_N PF00732.19 gi|14602204|ref|NP_147877.1| - 0.015 14.7 0.6 0.025 13.9 0.0 1.6 2 0 0 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.18 gi|14602204|ref|NP_147877.1| - 0.26 11.2 0.4 0.44 10.4 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|14602204|ref|NP_147877.1| - 0.35 10.1 1.0 0.65 9.2 1.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF996 PF06195.13 gi|118431413|ref|NP_147878.2| - 0.011 16.0 22.4 0.011 16.0 22.4 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF996) DUF973 PF06157.11 gi|118431414|ref|NP_147879.2| - 2.8 6.9 9.7 0.25 10.4 3.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF973) Topoisom_bac PF01131.20 gi|118431415|ref|NP_147880.2| - 1.2e-69 235.3 0.0 2.7e-66 224.3 0.0 2.7 2 1 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 gi|118431415|ref|NP_147880.2| - 1.5e-20 73.3 0.0 3.2e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|118431415|ref|NP_147880.2| - 1.4e-10 41.2 0.0 2.7e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|118431415|ref|NP_147880.2| - 1.8e-10 40.1 6.2 1.8e-10 40.1 6.2 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|118431415|ref|NP_147880.2| - 3.9e-10 40.1 0.0 2.6e-06 27.7 0.1 3.5 3 1 0 3 3 3 1 Helicase conserved C-terminal domain Zn-ribbon_8 PF09723.10 gi|118431415|ref|NP_147880.2| - 0.0013 18.8 5.8 0.37 10.9 0.5 2.8 2 0 0 2 2 2 2 Zinc ribbon domain Terminase_GpA PF05876.12 gi|118431415|ref|NP_147880.2| - 0.009 14.6 0.0 0.02 13.5 0.0 1.5 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) OrfB_Zn_ribbon PF07282.11 gi|118431415|ref|NP_147880.2| - 0.015 15.2 4.8 1.6 8.7 0.4 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|118431415|ref|NP_147880.2| - 0.017 15.1 4.1 0.23 11.5 0.4 2.4 2 0 0 2 2 2 0 Double zinc ribbon ResIII PF04851.15 gi|118431415|ref|NP_147880.2| - 0.02 14.9 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NRDD PF13597.6 gi|118431415|ref|NP_147880.2| - 0.024 13.4 0.2 0.044 12.6 0.2 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|118431415|ref|NP_147880.2| - 0.074 13.1 3.1 0.22 11.5 0.3 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Terminase_6 PF03237.15 gi|118431415|ref|NP_147880.2| - 0.089 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Terminase-like family DUF1272 PF06906.11 gi|118431415|ref|NP_147880.2| - 0.43 10.7 2.3 26 5.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.6 gi|118431415|ref|NP_147880.2| - 0.98 9.2 13.4 0.023 14.4 0.9 2.6 2 1 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|118431415|ref|NP_147880.2| - 4.5 7.4 6.7 0.73 9.9 0.0 2.8 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain AAA_25 PF13481.6 gi|118431415|ref|NP_147880.2| - 6.5 6.3 7.6 1.1 8.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain DUF35_N PF12172.8 gi|118431415|ref|NP_147880.2| - 7.8 6.5 14.5 0.073 13.0 1.0 3.0 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CN_hydrolase PF00795.22 gi|14601345|ref|NP_147881.1| - 9.6e-13 48.1 0.0 1.2e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase EamA PF00892.20 gi|118431416|ref|NP_147882.2| - 6.9e-06 26.3 5.0 7.5e-06 26.2 5.0 1.0 1 0 0 1 1 1 1 EamA-like transporter family DUF4892 PF16234.5 gi|118431416|ref|NP_147882.2| - 0.12 11.8 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4892) EamA PF00892.20 gi|14601347|ref|NP_147883.1| - 1.8e-24 86.4 32.4 2.4e-23 82.8 20.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family CRT-like PF08627.10 gi|14601347|ref|NP_147883.1| - 0.036 13.0 6.3 0.91 8.4 0.2 2.4 2 1 0 2 2 2 0 CRT-like, chloroquine-resistance transporter-like AMP-binding PF00501.28 gi|118431417|ref|NP_147884.2| - 8.3e-77 258.6 0.0 1.1e-76 258.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|118431417|ref|NP_147884.2| - 8.3e-22 78.0 0.6 1.7e-21 76.9 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|118431417|ref|NP_147884.2| - 6.9e-12 45.1 0.7 6.9e-12 45.1 0.7 1.7 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Lambda_tail_I PF06805.12 gi|118431417|ref|NP_147884.2| - 0.05 14.0 0.4 4 7.8 0.0 3.4 3 1 1 4 4 4 0 Bacteriophage lambda tail assembly protein I CoA_binding_2 PF13380.6 gi|118431418|ref|YP_874889.1| - 0.15 12.5 0.0 0.18 12.3 0.0 1.3 1 1 0 1 1 1 0 CoA binding domain MoaC PF01967.21 gi|118431419|ref|NP_147886.2| - 9.3e-47 158.5 2.6 1e-46 158.4 2.6 1.0 1 0 0 1 1 1 1 MoaC family DEAD PF00270.29 gi|118431420|ref|NP_147888.2| - 1e-11 44.9 0.0 2.4e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|118431420|ref|NP_147888.2| - 2.5e-11 43.9 0.0 1.3e-09 38.3 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|118431420|ref|NP_147888.2| - 0.04 13.9 0.0 0.08 12.9 0.0 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit PadR PF03551.14 gi|118431422|ref|NP_147893.2| - 4.7e-21 74.5 0.1 6.8e-21 74.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AphA_like PF14557.6 gi|118431422|ref|NP_147893.2| - 0.0001 22.1 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator RTP PF02334.16 gi|118431422|ref|NP_147893.2| - 0.00074 20.1 0.0 0.0011 19.6 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein Replic_Relax PF13814.6 gi|118431422|ref|NP_147893.2| - 0.12 12.4 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation adh_short_C2 PF13561.6 gi|118431423|ref|NP_147894.2| - 7.6e-24 84.6 0.0 1.1e-23 84.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|118431423|ref|NP_147894.2| - 6.2e-20 71.5 0.0 7.6e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|118431423|ref|NP_147894.2| - 3.4e-07 30.4 0.1 5.1e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 KR domain Sigma70_r4 PF04545.16 gi|118431423|ref|NP_147894.2| - 0.14 11.7 0.3 0.74 9.4 0.0 2.2 3 0 0 3 3 3 0 Sigma-70, region 4 Nup188 PF10487.9 gi|118431424|ref|NP_147895.2| - 0.1 10.5 0.0 0.12 10.3 0.0 1.0 1 0 0 1 1 1 0 Nucleoporin subcomplex protein binding to Pom34 RNA_Me_trans PF04252.13 gi|118431425|ref|NP_147896.2| - 2.1e-40 138.4 0.0 6.5e-40 136.8 0.0 1.7 1 1 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF3670 PF12419.8 gi|118431426|ref|NP_147897.2| - 0.055 13.3 0.3 7.8 6.3 0.0 2.4 2 0 0 2 2 2 0 SNF2 Helicase protein CheR_N PF03705.15 gi|118431426|ref|NP_147897.2| - 0.081 12.7 1.2 0.4 10.5 0.1 2.6 3 0 0 3 3 3 0 CheR methyltransferase, all-alpha domain RHH_1 PF01402.21 gi|118431426|ref|NP_147897.2| - 0.36 10.9 0.1 0.36 10.9 0.1 3.3 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family GCH_III PF05165.12 gi|118431427|ref|NP_147898.2| - 3e-98 328.0 0.3 3.6e-98 327.8 0.3 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III DUF5132 PF17195.4 gi|118431427|ref|NP_147898.2| - 0.076 13.1 0.8 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF5132) RdRP_4 PF02123.16 gi|118431427|ref|NP_147898.2| - 0.089 11.7 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Viral RNA-directed RNA-polymerase mCpol PF18182.1 gi|118431427|ref|NP_147898.2| - 0.13 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 minimal CRISPR polymerase domain DMRL_synthase PF00885.19 gi|118431428|ref|NP_147899.2| - 1.5e-33 115.6 0.2 1.7e-33 115.4 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase AAA PF00004.29 gi|14601365|ref|NP_147901.1| - 1.3e-101 336.3 0.0 1.8e-51 174.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|14601365|ref|NP_147901.1| - 9.1e-37 124.6 4.4 9.1e-18 63.8 0.3 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|14601365|ref|NP_147901.1| - 4.7e-29 100.4 0.2 3.7e-28 97.5 1.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|14601365|ref|NP_147901.1| - 8.8e-17 61.3 0.0 2.7e-08 33.7 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|14601365|ref|NP_147901.1| - 8.7e-16 58.5 0.0 9.1e-09 35.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|14601365|ref|NP_147901.1| - 9.2e-15 55.4 0.1 1e-06 29.3 0.0 3.5 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|14601365|ref|NP_147901.1| - 2.8e-14 52.6 2.7 2.2e-13 49.8 0.4 3.0 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), domain 2 Vps4_C PF09336.10 gi|14601365|ref|NP_147901.1| - 3.5e-12 46.1 0.7 5.1e-05 23.2 0.0 3.1 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_5 PF07728.14 gi|14601365|ref|NP_147901.1| - 3.1e-11 43.4 1.3 0.00022 21.2 0.2 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|14601365|ref|NP_147901.1| - 4.8e-11 43.0 0.0 0.00015 22.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|14601365|ref|NP_147901.1| - 5e-11 42.4 0.0 9.7e-05 21.7 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|14601365|ref|NP_147901.1| - 1.7e-10 41.3 1.2 0.0047 17.2 0.0 4.2 2 2 2 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|14601365|ref|NP_147901.1| - 3.9e-10 39.9 0.0 5.6e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|14601365|ref|NP_147901.1| - 1.8e-08 34.3 0.1 0.01 15.6 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|14601365|ref|NP_147901.1| - 2.7e-08 34.4 0.3 0.0015 19.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|14601365|ref|NP_147901.1| - 2.8e-08 34.2 0.0 0.0029 17.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|14601365|ref|NP_147901.1| - 2.4e-07 31.1 0.0 0.004 17.5 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|14601365|ref|NP_147901.1| - 9.3e-07 28.8 0.0 0.0071 16.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|14601365|ref|NP_147901.1| - 1.2e-06 28.1 3.0 0.017 14.5 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|14601365|ref|NP_147901.1| - 3.6e-06 27.0 0.0 0.043 13.8 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|14601365|ref|NP_147901.1| - 4.7e-06 26.1 2.4 0.091 12.1 0.0 3.5 3 1 0 4 4 4 2 KaiC Sigma54_activat PF00158.26 gi|14601365|ref|NP_147901.1| - 1.6e-05 24.6 0.0 0.49 10.1 0.0 3.4 3 1 0 3 3 3 2 Sigma-54 interaction domain ABC_tran PF00005.27 gi|14601365|ref|NP_147901.1| - 3e-05 24.6 0.0 0.47 11.0 0.0 2.8 3 0 0 3 3 2 2 ABC transporter Bac_DnaA PF00308.18 gi|14601365|ref|NP_147901.1| - 3e-05 24.0 0.0 0.0039 17.1 0.0 2.9 2 1 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.13 gi|14601365|ref|NP_147901.1| - 3.7e-05 23.0 0.0 0.13 11.4 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|14601365|ref|NP_147901.1| - 3.8e-05 23.3 0.0 0.22 11.0 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|14601365|ref|NP_147901.1| - 3.9e-05 22.9 0.5 0.049 12.7 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|14601365|ref|NP_147901.1| - 5e-05 23.2 0.0 0.16 11.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|14601365|ref|NP_147901.1| - 5.6e-05 22.6 0.0 0.017 14.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|14601365|ref|NP_147901.1| - 7.1e-05 22.4 1.0 0.2 11.1 0.1 2.7 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.12 gi|14601365|ref|NP_147901.1| - 7.3e-05 22.7 0.8 0.71 9.8 0.1 3.7 4 0 0 4 4 4 2 NACHT domain ATPase_2 PF01637.18 gi|14601365|ref|NP_147901.1| - 0.0001 22.3 0.1 0.03 14.2 0.0 3.0 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|14601365|ref|NP_147901.1| - 0.00012 21.5 0.0 0.32 10.3 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.6 gi|14601365|ref|NP_147901.1| - 0.00022 20.8 10.5 0.51 9.9 0.0 4.5 4 2 0 4 4 3 2 AAA domain AAA_17 PF13207.6 gi|14601365|ref|NP_147901.1| - 0.00039 20.9 0.0 0.7 10.3 0.0 3.3 3 0 0 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|14601365|ref|NP_147901.1| - 0.0011 19.1 0.0 2 8.5 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_11 PF13086.6 gi|14601365|ref|NP_147901.1| - 0.0014 18.5 0.0 1.4 8.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|14601365|ref|NP_147901.1| - 0.0014 18.4 0.5 2.6 7.7 0.0 3.0 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.6 gi|14601365|ref|NP_147901.1| - 0.0019 18.5 0.6 3.6 7.9 0.0 3.0 2 1 1 3 3 3 0 AAA domain AAA_6 PF12774.7 gi|14601365|ref|NP_147901.1| - 0.0022 17.1 0.0 0.18 10.7 0.0 2.9 3 0 0 3 3 3 1 Hydrolytic ATP binding site of dynein motor region IPT PF01745.16 gi|14601365|ref|NP_147901.1| - 0.0022 17.4 0.1 2.3 7.6 0.0 2.6 2 0 0 2 2 2 1 Isopentenyl transferase Rad17 PF03215.15 gi|14601365|ref|NP_147901.1| - 0.0038 17.2 0.0 2 8.3 0.0 2.6 2 1 1 3 3 3 1 Rad17 P-loop domain DUF1905 PF08922.11 gi|14601365|ref|NP_147901.1| - 0.0047 17.0 0.1 0.47 10.5 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1905) Cytidylate_kin PF02224.18 gi|14601365|ref|NP_147901.1| - 0.0082 15.9 0.9 2.1 8.0 0.0 2.9 3 0 0 3 3 2 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|14601365|ref|NP_147901.1| - 0.0094 16.1 0.0 1.5 8.9 0.0 2.7 2 0 0 2 2 2 1 Cytidylate kinase-like family Molydop_binding PF01568.21 gi|14601365|ref|NP_147901.1| - 0.017 15.2 0.5 0.36 10.9 0.1 2.6 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain SKI PF01202.22 gi|14601365|ref|NP_147901.1| - 0.017 15.2 0.0 2.5 8.2 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase NB-ARC PF00931.22 gi|14601365|ref|NP_147901.1| - 0.019 14.2 0.0 4.4 6.4 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|14601365|ref|NP_147901.1| - 0.019 14.9 2.0 23 4.9 0.0 4.1 3 1 1 4 4 3 0 NTPase Guanylate_kin PF00625.21 gi|14601365|ref|NP_147901.1| - 0.03 14.0 0.4 38 3.9 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|14601365|ref|NP_147901.1| - 0.033 13.1 0.0 8.6 5.1 0.0 2.5 3 0 0 3 3 2 0 AFG1-like ATPase T2SSE PF00437.20 gi|14601365|ref|NP_147901.1| - 0.043 12.9 0.0 2.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|14601365|ref|NP_147901.1| - 0.053 13.3 0.0 6.5 6.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|14601365|ref|NP_147901.1| - 0.069 12.9 0.0 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DNA_ligase_OB PF03120.16 gi|14601365|ref|NP_147901.1| - 0.072 13.0 0.3 5.1 7.1 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain AAA_29 PF13555.6 gi|14601365|ref|NP_147901.1| - 0.094 12.5 0.0 18 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain ResIII PF04851.15 gi|14601365|ref|NP_147901.1| - 0.22 11.5 0.0 21 5.0 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DUF4010 PF13194.6 gi|14601368|ref|NP_147904.1| - 9e-36 123.5 24.8 9e-36 123.5 24.8 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|14601368|ref|NP_147904.1| - 4.5e-11 43.2 15.1 4.5e-11 43.2 15.1 3.3 3 2 0 3 3 3 1 MgtC family PAS_5 PF07310.13 gi|118431430|ref|YP_874890.1| - 0.062 13.1 0.0 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 PAS domain SpoVS PF04232.12 gi|118431430|ref|YP_874890.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) Topoisom_bac PF01131.20 gi|118431431|ref|NP_147906.2| - 7.2e-81 272.3 0.0 1e-80 271.8 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|118431431|ref|NP_147906.2| - 2.9e-22 78.8 0.0 8.9e-22 77.3 0.0 1.9 2 0 0 2 2 2 1 Toprim domain zf_Rg PF17915.1 gi|118431431|ref|NP_147906.2| - 9.7e-13 47.3 1.9 9.7e-13 47.3 1.9 1.8 2 0 0 2 2 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|118431431|ref|NP_147906.2| - 1.3e-11 44.6 0.0 3.4e-11 43.2 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|118431431|ref|NP_147906.2| - 2.4e-05 24.4 0.0 5.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit zinc_ribbon_2 PF13240.6 gi|118431431|ref|NP_147906.2| - 0.00017 21.2 2.6 0.00017 21.2 2.6 1.9 2 0 0 2 2 2 1 zinc-ribbon domain Toprim_4 PF13662.6 gi|118431431|ref|NP_147906.2| - 0.00071 20.0 0.0 0.026 15.0 0.0 3.1 3 0 0 3 3 2 1 Toprim domain AAA_25 PF13481.6 gi|118431431|ref|NP_147906.2| - 0.0016 18.0 0.0 0.0053 16.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|118431431|ref|NP_147906.2| - 0.0023 17.7 0.1 0.013 15.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain CarD_CdnL_TRCF PF02559.16 gi|118431431|ref|NP_147906.2| - 0.0026 18.4 0.2 0.0077 16.9 0.2 1.8 1 0 0 1 1 1 1 CarD-like/TRCF domain Helicase_C PF00271.31 gi|118431431|ref|NP_147906.2| - 0.0026 18.1 0.0 0.14 12.5 0.0 3.4 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DZR PF12773.7 gi|118431431|ref|NP_147906.2| - 0.015 15.3 0.4 0.015 15.3 0.4 2.1 2 0 0 2 2 2 0 Double zinc ribbon IstB_IS21 PF01695.17 gi|118431431|ref|NP_147906.2| - 0.065 13.0 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein zinc_ribbon_15 PF17032.5 gi|118431431|ref|NP_147906.2| - 0.077 13.8 0.8 0.12 13.2 0.2 1.6 2 0 0 2 2 1 0 zinc-ribbon family zf-NADH-PPase PF09297.11 gi|118431431|ref|NP_147906.2| - 0.11 12.1 5.2 0.14 11.8 0.7 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain AAA_22 PF13401.6 gi|118431431|ref|NP_147906.2| - 0.16 12.3 0.1 1 9.6 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|118431431|ref|NP_147906.2| - 0.17 12.2 0.0 0.48 10.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain zf-ribbon_3 PF13248.6 gi|118431431|ref|NP_147906.2| - 3.6 7.1 11.9 0.33 10.4 4.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|118431431|ref|NP_147906.2| - 4.3 7.3 10.7 0.35 10.8 5.4 1.9 2 0 0 2 2 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ABC_tran PF00005.27 gi|118431432|ref|NP_147907.2| - 3.5e-23 82.6 0.0 5.6e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431432|ref|NP_147907.2| - 3.1e-15 56.8 0.2 9.2e-09 35.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|118431432|ref|NP_147907.2| - 3.2e-06 27.8 0.0 6.9e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|118431432|ref|NP_147907.2| - 5.3e-06 27.1 0.2 9.1e-06 26.3 0.2 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|118431432|ref|NP_147907.2| - 9.5e-06 25.2 0.0 0.0085 15.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|118431432|ref|NP_147907.2| - 0.0014 18.4 0.3 0.071 12.8 0.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|118431432|ref|NP_147907.2| - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|118431432|ref|NP_147907.2| - 0.033 14.5 0.0 0.39 11.0 0.1 2.4 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|118431432|ref|NP_147907.2| - 0.04 14.2 0.3 0.19 12.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|118431432|ref|NP_147907.2| - 0.049 13.8 0.0 0.35 11.0 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|118431432|ref|NP_147907.2| - 0.05 14.0 0.2 0.088 13.2 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|118431432|ref|NP_147907.2| - 0.059 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|118431432|ref|NP_147907.2| - 0.074 12.6 0.9 0.14 11.7 0.9 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|118431432|ref|NP_147907.2| - 0.086 12.9 0.1 1.8 8.6 0.2 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|118431432|ref|NP_147907.2| - 0.086 12.7 0.3 1.2 9.0 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA_13 PF13166.6 gi|118431432|ref|NP_147907.2| - 0.09 11.4 0.0 5.3 5.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|118431432|ref|NP_147907.2| - 0.095 12.4 0.0 1.1 8.8 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|118431432|ref|NP_147907.2| - 0.095 12.6 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|118431432|ref|NP_147907.2| - 0.14 11.2 0.4 0.24 10.4 0.4 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|118431432|ref|NP_147907.2| - 0.23 11.4 0.5 0.53 10.2 0.5 1.5 1 0 0 1 1 1 0 NACHT domain ABC2_membrane_4 PF12730.7 gi|118431433|ref|NP_147908.2| - 0.00012 22.1 5.1 0.00012 22.1 5.1 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein Pam17 PF08566.10 gi|118431433|ref|NP_147908.2| - 0.18 11.6 0.3 0.53 10.1 0.3 1.8 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 Transp_cyt_pur PF02133.15 gi|14601373|ref|NP_147909.1| - 9e-21 74.2 30.5 9e-21 74.2 30.5 1.5 2 0 0 2 2 2 1 Permease for cytosine/purines, uracil, thiamine, allantoin Prenyltransf PF01255.19 gi|14601375|ref|NP_147911.1| - 6.5e-34 117.4 0.1 7.3e-31 107.4 0.1 2.0 1 1 0 1 1 1 1 Putative undecaprenyl diphosphate synthase ELFV_dehydrog PF00208.21 gi|118431434|ref|NP_147912.2| - 5.7e-72 242.3 1.9 7e-72 242.1 1.9 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|118431434|ref|NP_147912.2| - 3.9e-52 175.6 0.0 8.1e-52 174.5 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|118431434|ref|NP_147912.2| - 0.00017 21.0 0.2 0.00032 20.1 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_transf_3 PF02515.17 gi|118431434|ref|NP_147912.2| - 0.0061 15.7 0.0 0.009 15.2 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III Bac_GDH PF05088.12 gi|118431434|ref|NP_147912.2| - 0.014 12.9 0.1 0.02 12.4 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase NAD_binding_7 PF13241.6 gi|118431434|ref|NP_147912.2| - 0.018 15.4 0.1 0.033 14.6 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Oxidored_nitro PF00148.19 gi|118431434|ref|NP_147912.2| - 0.03 13.1 0.0 0.041 12.6 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.21 gi|118431434|ref|NP_147912.2| - 0.088 12.9 1.4 0.26 11.3 1.4 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF1028 PF06267.12 gi|118431436|ref|NP_147914.2| - 8.9e-73 244.2 0.1 1.1e-72 243.9 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.11 gi|118431436|ref|NP_147914.2| - 1.7e-27 95.5 0.7 8.7e-27 93.3 0.0 2.3 3 0 0 3 3 3 1 Putative peptidoglycan binding domain PG_binding_1 PF01471.18 gi|118431436|ref|NP_147914.2| - 0.037 14.2 0.0 0.099 12.9 0.0 1.7 1 0 0 1 1 1 0 Putative peptidoglycan binding domain RuvA_C PF07499.13 gi|118431436|ref|NP_147914.2| - 0.18 12.3 1.8 15 6.2 0.4 2.7 2 0 0 2 2 2 0 RuvA, C-terminal domain POTRA_TamA_1 PF17243.2 gi|118431436|ref|NP_147914.2| - 0.19 11.9 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 POTRA domain TamA domain 1 SBP_bac_5 PF00496.22 gi|118431437|ref|NP_147915.2| - 3.4e-63 213.9 5.4 5.7e-63 213.1 5.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|118431438|ref|NP_147917.2| - 1.6e-37 129.1 14.3 1.6e-37 129.1 14.3 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ACR_tran PF00873.19 gi|118431438|ref|NP_147917.2| - 1.7 6.2 4.3 2.6 5.6 4.3 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family BPD_transp_1 PF00528.22 gi|14601382|ref|NP_147918.1| - 1.9e-28 99.5 14.3 1.9e-28 99.5 14.3 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|14601382|ref|NP_147918.1| - 3.9e-05 23.5 0.8 3.9e-05 23.5 0.8 3.9 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C PIG-P PF08510.12 gi|14601382|ref|NP_147918.1| - 0.25 11.3 0.1 0.25 11.3 0.1 2.3 3 0 0 3 3 3 0 PIG-P ABC_tran PF00005.27 gi|14601383|ref|NP_147919.1| - 5.2e-23 82.1 0.0 6.9e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|14601383|ref|NP_147919.1| - 6.4e-21 74.6 0.3 1.2e-20 73.8 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|14601383|ref|NP_147919.1| - 6.1e-08 32.8 0.1 8.9e-06 25.7 0.2 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|14601383|ref|NP_147919.1| - 0.0082 16.4 0.8 0.11 12.7 0.8 2.1 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 gi|14601383|ref|NP_147919.1| - 0.015 15.0 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|14601383|ref|NP_147919.1| - 0.05 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|14601383|ref|NP_147919.1| - 0.063 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|14601383|ref|NP_147919.1| - 0.14 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) GETHR PF05671.11 gi|14601383|ref|NP_147919.1| - 4.5 6.7 6.3 1.1 8.7 2.8 1.8 2 0 0 2 2 2 0 GETHR pentapeptide repeat (5 copies) ABC_tran PF00005.27 gi|118431439|ref|NP_147920.2| - 2.6e-29 102.5 0.0 3.5e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|118431439|ref|NP_147920.2| - 8.9e-20 71.0 0.2 1.5e-19 70.3 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|118431439|ref|NP_147920.2| - 1.7e-08 34.7 1.0 1.3e-05 25.2 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431439|ref|NP_147920.2| - 3e-05 23.6 0.3 0.00071 19.1 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|118431439|ref|NP_147920.2| - 0.00072 19.8 0.0 0.0021 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|118431439|ref|NP_147920.2| - 0.00085 18.7 0.5 0.0032 16.8 0.2 1.9 2 0 0 2 2 2 1 KaiC TniB PF05621.11 gi|118431439|ref|NP_147920.2| - 0.03 13.8 0.1 0.42 10.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA PF00004.29 gi|118431439|ref|NP_147920.2| - 0.033 14.6 0.0 0.8 10.1 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|118431439|ref|NP_147920.2| - 0.052 13.8 0.0 0.57 10.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|118431439|ref|NP_147920.2| - 0.065 12.8 0.0 3.3 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|118431439|ref|NP_147920.2| - 0.11 11.1 0.5 2.4 6.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|118431439|ref|NP_147920.2| - 0.17 12.3 1.2 0.4 11.0 1.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|118431439|ref|NP_147920.2| - 0.18 11.6 0.5 0.35 10.6 0.5 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Pox_A32 PF04665.12 gi|118431439|ref|NP_147920.2| - 0.4 10.1 3.2 2.2 7.7 0.3 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein EPSP_synthase PF00275.20 gi|118431440|ref|NP_147921.2| - 1.4e-58 198.6 0.0 1.6e-58 198.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF3209 PF11483.8 gi|118431441|ref|NP_147922.2| - 0.00052 20.5 6.1 0.0011 19.4 6.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3209) Apolipoprotein PF01442.18 gi|118431441|ref|NP_147922.2| - 0.0065 16.4 8.0 0.01 15.8 8.0 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Spo0A_C PF08769.11 gi|118431441|ref|NP_147922.2| - 0.0075 16.3 0.4 0.81 9.8 0.2 2.0 1 1 1 2 2 2 1 Sporulation initiation factor Spo0A C terminal HSP70 PF00012.20 gi|118431441|ref|NP_147922.2| - 0.027 12.7 2.8 0.029 12.5 2.8 1.0 1 0 0 1 1 1 0 Hsp70 protein SNARE PF05739.19 gi|118431441|ref|NP_147922.2| - 0.031 14.2 0.6 0.12 12.4 0.2 2.1 1 1 0 2 2 2 0 SNARE domain DUF4777 PF16007.5 gi|118431441|ref|NP_147922.2| - 0.052 13.8 0.2 0.21 11.9 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4777) ARGLU PF15346.6 gi|118431441|ref|NP_147922.2| - 0.061 13.2 8.6 0.022 14.7 6.2 1.4 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 CFAP91 PF14738.6 gi|118431441|ref|NP_147922.2| - 0.068 13.2 2.6 0.075 13.1 2.6 1.2 1 0 0 1 1 1 0 Cilia- and flagella-associated protein 91 MukF_M PF17192.4 gi|118431441|ref|NP_147922.2| - 0.071 12.8 1.9 0.46 10.2 0.5 1.9 1 1 1 2 2 2 0 MukF middle domain DUF2294 PF10057.9 gi|118431441|ref|NP_147922.2| - 0.093 12.9 0.2 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) Baculo_PEP_C PF04513.12 gi|118431441|ref|NP_147922.2| - 0.094 12.8 0.4 0.18 11.9 0.3 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1678 PF07913.11 gi|118431441|ref|NP_147922.2| - 0.11 12.2 0.4 0.12 12.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) Cas_Csa4 PF09703.10 gi|118431441|ref|NP_147922.2| - 0.13 11.6 0.9 0.16 11.2 0.8 1.3 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Csa4) TMPIT PF07851.13 gi|118431441|ref|NP_147922.2| - 0.17 11.1 0.8 0.18 11.0 0.8 1.0 1 0 0 1 1 1 0 TMPIT-like protein Uso1_p115_C PF04871.13 gi|118431441|ref|NP_147922.2| - 0.22 11.9 9.0 0.66 10.4 9.0 1.8 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region GrpE PF01025.19 gi|118431441|ref|NP_147922.2| - 0.68 9.6 7.7 1.9 8.1 7.7 1.7 1 1 0 1 1 1 0 GrpE vATP-synt_AC39 PF01992.16 gi|118431442|ref|NP_147923.2| - 0.012 15.2 0.0 0.018 14.5 0.0 1.6 1 1 0 1 1 1 0 ATP synthase (C/AC39) subunit HTH_41 PF14502.6 gi|118431443|ref|YP_874891.1| - 0.0005 19.7 0.0 0.00074 19.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FdhE PF04216.12 gi|118431444|ref|NP_147924.2| - 3.4e-06 27.2 0.1 6.1e-06 26.3 0.1 1.4 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zinc_ribbon_15 PF17032.5 gi|118431444|ref|NP_147924.2| - 0.00017 22.2 0.5 0.00035 21.2 0.5 1.5 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|118431444|ref|NP_147924.2| - 0.016 15.2 1.7 0.79 9.8 2.4 2.6 1 1 1 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|118431444|ref|NP_147924.2| - 0.018 14.9 3.4 1.5 8.8 0.2 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|118431444|ref|NP_147924.2| - 0.039 14.0 0.1 3.1 7.9 0.0 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|118431444|ref|NP_147924.2| - 0.059 13.8 5.7 1.4 9.3 1.3 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar UPF0547 PF10571.9 gi|118431444|ref|NP_147924.2| - 0.11 12.6 15.7 0.53 10.4 0.2 3.9 4 0 0 4 4 3 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|118431444|ref|NP_147924.2| - 0.12 12.4 5.6 32 4.6 0.4 3.5 3 0 0 3 3 3 0 Nudix N-terminal NMD3 PF04981.13 gi|118431444|ref|NP_147924.2| - 0.12 11.8 0.5 0.9 9.0 0.5 2.2 1 1 0 1 1 1 0 NMD3 family zf-C3HC4_3 PF13920.6 gi|118431444|ref|NP_147924.2| - 0.16 11.8 5.1 0.071 13.0 1.9 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.6 gi|118431444|ref|NP_147924.2| - 0.17 12.5 5.7 5.2 7.8 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|118431444|ref|NP_147924.2| - 0.31 11.2 7.4 18 5.5 5.2 3.1 2 1 1 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|118431444|ref|NP_147924.2| - 0.38 10.5 9.8 5.9 6.8 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Prok-RING_4 PF14447.6 gi|118431444|ref|NP_147924.2| - 0.49 10.3 5.1 14 5.6 5.4 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 HypA PF01155.19 gi|118431444|ref|NP_147924.2| - 0.62 10.1 3.0 5.3 7.1 1.0 3.0 1 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|118431444|ref|NP_147924.2| - 0.89 9.3 17.8 12 5.6 0.1 4.3 3 1 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|118431444|ref|NP_147924.2| - 0.96 9.5 12.0 14 5.7 6.4 3.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|118431444|ref|NP_147924.2| - 1.2 8.7 7.5 5 6.7 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|118431444|ref|NP_147924.2| - 1.3 8.6 5.6 2.5 7.8 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|118431444|ref|NP_147924.2| - 1.4 8.5 12.8 4.6 6.8 1.7 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding zf-LITAF-like PF10601.9 gi|118431444|ref|NP_147924.2| - 1.5 9.2 8.1 5.7 7.3 8.1 2.0 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|118431444|ref|NP_147924.2| - 1.8 8.6 7.5 5.8 7.0 0.2 3.2 2 2 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_2 PF13639.6 gi|118431444|ref|NP_147924.2| - 3.9 7.9 9.5 0.98 9.8 5.3 2.2 2 1 1 3 3 3 0 Ring finger domain NOB1_Zn_bind PF08772.11 gi|118431444|ref|NP_147924.2| - 4.3 7.6 9.4 0.52 10.5 0.6 2.7 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-FPG_IleRS PF06827.14 gi|118431444|ref|NP_147924.2| - 6.1 6.8 12.4 4.6 7.2 0.4 3.5 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-C3HC4_2 PF13923.6 gi|118431444|ref|NP_147924.2| - 6.2 6.8 9.2 9.2 6.2 5.8 2.7 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4 PF00097.25 gi|118431444|ref|NP_147924.2| - 8.2 6.4 10.1 14 5.6 6.8 2.7 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) CytB6-F_Fe-S PF08802.10 gi|118431445|ref|NP_147926.2| - 0.19 11.8 0.1 0.19 11.8 0.1 4.3 5 0 0 5 5 5 0 Cytochrome B6-F complex Fe-S subunit Proton_antipo_M PF00361.20 gi|118431447|ref|NP_147927.2| - 6.2e-23 81.4 25.8 6.2e-23 81.4 25.8 3.4 2 1 0 2 2 2 1 Proton-conducting membrane transporter Tmpp129 PF10272.9 gi|118431447|ref|NP_147927.2| - 0.52 9.6 1.0 0.9 8.8 1.0 1.3 1 0 0 1 1 1 0 Putative transmembrane protein precursor Proton_antipo_M PF00361.20 gi|118431448|ref|NP_147928.2| - 1.1e-51 175.9 29.6 4.3e-48 164.0 27.7 4.9 4 1 0 4 4 4 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|118431448|ref|NP_147928.2| - 9.1e-15 54.5 2.7 9.1e-15 54.5 2.7 3.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|14601393|ref|NP_147929.1| - 2.8e-57 194.2 22.7 5.6e-57 193.2 22.1 1.8 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|14601393|ref|NP_147929.1| - 0.00048 20.1 3.6 0.0068 16.5 0.1 3.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|118431449|ref|NP_147930.2| - 3e-11 42.9 9.6 3.8e-11 42.5 9.6 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF485 PF04341.12 gi|118431449|ref|NP_147930.2| - 0.0079 16.1 1.6 0.0079 16.1 1.6 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF485 NADHdh PF00146.21 gi|118431449|ref|NP_147930.2| - 0.017 14.4 5.3 0.021 14.2 5.3 1.1 1 0 0 1 1 1 0 NADH dehydrogenase ArAE_2_N PF10337.9 gi|118431449|ref|NP_147930.2| - 0.041 12.9 4.6 0.051 12.6 4.6 1.1 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal Amastin PF07344.11 gi|118431449|ref|NP_147930.2| - 1.3 8.9 7.1 0.11 12.3 2.8 1.4 2 0 0 2 2 2 0 Amastin surface glycoprotein Oxidored_q3 PF00499.20 gi|118431450|ref|NP_147931.2| - 5.3e-16 58.6 11.3 5.3e-16 58.6 11.3 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2207 PF09972.9 gi|118431450|ref|NP_147931.2| - 0.48 9.1 6.9 0.16 10.7 4.3 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Fer4 PF00037.27 gi|118431451|ref|NP_147932.2| - 6.2e-14 51.1 13.9 8e-09 35.0 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|118431451|ref|NP_147932.2| - 4.9e-12 46.3 20.9 3.5e-09 37.1 11.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|118431451|ref|NP_147932.2| - 1.8e-10 40.8 21.0 3.6e-07 30.2 12.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|118431451|ref|NP_147932.2| - 7.2e-10 38.5 14.4 1.3e-05 25.1 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|118431451|ref|NP_147932.2| - 2.8e-09 37.8 5.2 0.00083 20.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|118431451|ref|NP_147932.2| - 3.9e-09 36.5 19.6 7.8e-08 32.4 9.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|118431451|ref|NP_147932.2| - 5.4e-08 32.8 8.2 8.4e-08 32.2 8.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|118431451|ref|NP_147932.2| - 2.6e-07 31.1 3.2 0.0039 17.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|118431451|ref|NP_147932.2| - 8.2e-07 28.8 11.1 0.0027 17.7 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|118431451|ref|NP_147932.2| - 3.6e-06 27.1 11.8 0.0039 17.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|118431451|ref|NP_147932.2| - 1.3e-05 25.5 8.4 0.00059 20.2 10.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|118431451|ref|NP_147932.2| - 7.9e-05 23.3 3.6 0.18 12.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|118431451|ref|NP_147932.2| - 0.00012 22.6 10.6 0.096 13.2 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|118431451|ref|NP_147932.2| - 0.00027 21.1 5.6 0.058 13.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|118431451|ref|NP_147932.2| - 0.0015 19.3 15.2 0.032 15.2 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|118431451|ref|NP_147932.2| - 0.12 13.3 12.2 1.6 9.6 1.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|118431451|ref|NP_147932.2| - 4 7.6 7.1 5.1 7.3 2.5 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NADHdh PF00146.21 gi|118431452|ref|NP_147933.2| - 8.5e-78 261.7 23.2 1.1e-77 261.4 23.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase PGG PF13962.6 gi|118431452|ref|NP_147933.2| - 0.29 11.0 4.6 0.16 11.8 0.8 2.5 1 1 1 2 2 2 0 Domain of unknown function Complex1_49kDa PF00346.19 gi|14601398|ref|NP_147934.1| - 4.5e-85 285.0 0.0 5.9e-85 284.6 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|14601399|ref|NP_147935.1| - 5.3e-32 111.0 0.0 6.8e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Glyoxalase_3 PF13468.6 gi|14601399|ref|NP_147935.1| - 0.026 14.7 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain RITA PF17066.5 gi|14601399|ref|NP_147935.1| - 0.042 13.4 0.0 1.8 8.1 0.0 2.1 1 1 1 2 2 2 0 RBPJ-interacting and tubulin associated protein Oxidored_q6 PF01058.22 gi|118431453|ref|NP_147936.2| - 3.2e-20 72.3 0.1 4.5e-20 71.8 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|118431454|ref|NP_147938.2| - 0.00012 22.2 0.7 0.00019 21.5 0.1 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GTP_EFTU PF00009.27 gi|14601403|ref|NP_147939.1| - 6.6e-65 218.3 0.1 9.4e-65 217.8 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|14601403|ref|NP_147939.1| - 9.1e-33 112.6 0.1 5.1e-31 107.0 0.0 3.2 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|14601403|ref|NP_147939.1| - 1.1e-23 83.1 0.1 2.5e-23 82.0 0.1 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|14601403|ref|NP_147939.1| - 7.9e-23 80.3 0.0 3.4e-22 78.3 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|14601403|ref|NP_147939.1| - 1.1e-13 51.3 0.1 3.1e-13 49.9 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|14601403|ref|NP_147939.1| - 0.00011 22.3 0.1 0.00026 21.1 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase HIGH_NTase1_ass PF16581.5 gi|14601403|ref|NP_147939.1| - 0.035 14.1 0.3 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Cytidyltransferase-related C-terminal region SRPRB PF09439.10 gi|14601403|ref|NP_147939.1| - 0.039 13.4 0.1 0.48 9.8 0.0 2.2 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Dak2 PF02734.17 gi|14601403|ref|NP_147939.1| - 0.048 13.6 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 DAK2 domain ERCC4 PF02732.15 gi|118431455|ref|NP_147940.2| - 3.7e-22 79.2 0.0 5.2e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|118431455|ref|NP_147940.2| - 1.6e-11 44.6 0.1 3.8e-11 43.4 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|118431455|ref|NP_147940.2| - 4.5e-10 38.9 0.0 5.8e-06 25.9 0.1 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|118431455|ref|NP_147940.2| - 9.5e-10 38.4 0.0 3.9e-09 36.5 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|118431455|ref|NP_147940.2| - 2.8e-05 24.3 0.1 0.087 13.1 0.1 2.5 1 1 1 2 2 2 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|118431455|ref|NP_147940.2| - 5.9e-05 23.2 0.2 0.017 15.4 0.0 2.5 2 0 0 2 2 2 1 IMS family HHH motif 5_3_exonuc PF01367.20 gi|118431455|ref|NP_147940.2| - 0.0013 19.3 0.0 0.02 15.5 0.0 2.3 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|118431455|ref|NP_147940.2| - 0.0013 19.0 0.1 2.1 8.8 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain Transposase_20 PF02371.16 gi|118431455|ref|NP_147940.2| - 0.011 16.1 0.1 0.029 14.7 0.0 1.9 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family RNA_pol_A_CTD PF03118.15 gi|118431455|ref|NP_147940.2| - 0.056 13.2 0.3 0.33 10.8 0.3 2.2 2 1 1 3 3 3 0 Bacterial RNA polymerase, alpha chain C terminal domain DHH PF01368.20 gi|118431456|ref|NP_147941.2| - 2.8e-13 50.0 0.0 4.9e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|118431456|ref|NP_147941.2| - 2.8e-08 34.3 0.6 6.4e-08 33.1 0.6 1.6 1 0 0 1 1 1 1 DHHA1 domain DUF5345 PF17280.2 gi|118431457|ref|YP_874893.1| - 0.12 12.3 0.1 0.78 9.8 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5345) Prefoldin_2 PF01920.20 gi|14601406|ref|NP_147942.1| - 7.2e-25 87.0 9.9 8.1e-25 86.8 9.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Nsp1_C PF05064.13 gi|14601406|ref|NP_147942.1| - 0.0018 18.1 3.1 0.033 14.0 0.6 2.1 2 0 0 2 2 2 1 Nsp1-like C-terminal region DUF2408 PF10303.9 gi|14601406|ref|NP_147942.1| - 0.0034 18.0 4.2 0.0047 17.5 4.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) Prefoldin PF02996.17 gi|14601406|ref|NP_147942.1| - 0.0034 17.3 7.5 0.004 17.0 4.4 2.0 1 1 1 2 2 2 1 Prefoldin subunit YlqD PF11068.8 gi|14601406|ref|NP_147942.1| - 0.0051 17.2 1.3 0.043 14.2 0.5 2.0 2 0 0 2 2 2 1 YlqD protein Nup54_57_C PF18570.1 gi|14601406|ref|NP_147942.1| - 0.063 12.9 2.2 0.063 12.9 2.2 2.5 2 0 0 2 2 2 0 NUP57/Nup54 C-terminal domain Laminin_II PF06009.12 gi|14601406|ref|NP_147942.1| - 0.073 13.1 6.2 0.14 12.2 6.2 1.5 1 1 0 1 1 1 0 Laminin Domain II ADIP PF11559.8 gi|14601406|ref|NP_147942.1| - 0.077 13.1 4.8 3.4 7.8 4.6 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding CENP-K PF11802.8 gi|14601406|ref|NP_147942.1| - 0.14 11.7 6.0 0.18 11.3 6.0 1.2 1 0 0 1 1 1 0 Centromere-associated protein K FlaC_arch PF05377.11 gi|14601406|ref|NP_147942.1| - 0.15 12.4 8.6 0.15 12.4 5.3 2.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Occludin_ELL PF07303.13 gi|14601406|ref|NP_147942.1| - 0.25 12.1 5.3 1.3 9.7 5.3 2.0 1 1 0 1 1 1 0 Occludin homology domain CENP-F_leu_zip PF10473.9 gi|14601406|ref|NP_147942.1| - 0.25 11.4 13.6 4.4 7.3 13.5 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HIP1_clath_bdg PF16515.5 gi|14601406|ref|NP_147942.1| - 0.38 11.4 10.9 1 10.0 6.5 2.1 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Cortex-I_coil PF09304.10 gi|14601406|ref|NP_147942.1| - 0.49 10.6 11.3 2 8.7 7.3 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil DASH_Dad2 PF08654.10 gi|14601406|ref|NP_147942.1| - 0.83 10.1 5.9 3.4 8.1 2.8 2.1 1 1 1 2 2 2 0 DASH complex subunit Dad2 APG6_N PF17675.1 gi|14601406|ref|NP_147942.1| - 0.91 10.1 16.5 0.86 10.1 10.2 2.0 1 1 0 2 2 2 0 Apg6 coiled-coil region Vir_act_alpha_C PF10400.9 gi|14601406|ref|NP_147942.1| - 1.2 9.9 5.3 5 7.9 3.3 2.4 1 1 1 2 2 2 0 Virulence activator alpha C-term DUF5320 PF17253.2 gi|14601406|ref|NP_147942.1| - 1.2 10.2 7.3 0.66 11.1 3.6 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5320) FbpA PF05833.11 gi|14601406|ref|NP_147942.1| - 1.3 7.6 11.8 1.3 7.7 2.9 2.0 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) DUF4140 PF13600.6 gi|14601406|ref|NP_147942.1| - 3.1 8.3 6.0 52 4.4 6.0 2.2 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) FTA4 PF13093.6 gi|14601406|ref|NP_147942.1| - 4.8 7.0 8.8 7.7 6.4 8.8 1.3 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Spc24 PF08286.11 gi|14601406|ref|NP_147942.1| - 4.8 7.5 7.9 5.7 7.2 4.8 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Spc7 PF08317.11 gi|14601406|ref|NP_147942.1| - 5.2 5.9 10.8 4.5 6.1 6.2 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein Pcc1 PF09341.10 gi|118431458|ref|YP_874894.1| - 0.00016 21.8 0.0 0.00019 21.5 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 MS_channel PF00924.18 gi|118431459|ref|NP_147944.2| - 1.1e-50 172.1 0.4 1.4e-50 171.7 0.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF432 PF04254.13 gi|14601408|ref|NP_147945.1| - 6.6e-28 97.4 0.0 8.9e-28 96.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Ribosomal_L37ae PF01780.19 gi|14601410|ref|NP_147947.1| - 2.7e-32 110.7 3.1 3e-32 110.6 3.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|14601410|ref|NP_147947.1| - 2.7e-05 24.0 2.0 3.9e-05 23.5 2.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|14601410|ref|NP_147947.1| - 0.00096 19.5 0.6 0.0014 19.0 0.6 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|14601410|ref|NP_147947.1| - 0.0037 17.1 2.3 0.0055 16.6 2.3 1.3 1 1 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|14601410|ref|NP_147947.1| - 0.0061 16.0 0.6 0.009 15.5 0.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4379 PF14311.6 gi|14601410|ref|NP_147947.1| - 0.02 15.2 2.2 0.19 12.1 0.3 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|14601410|ref|NP_147947.1| - 0.037 14.2 1.1 0.47 10.6 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|14601410|ref|NP_147947.1| - 0.11 13.0 1.6 0.28 11.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Elf1 PF05129.13 gi|14601410|ref|NP_147947.1| - 0.12 12.5 0.6 0.22 11.6 0.6 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ISL3 PF14690.6 gi|14601410|ref|NP_147947.1| - 0.25 12.0 6.7 0.73 10.6 0.4 2.5 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.6 gi|14601410|ref|NP_147947.1| - 0.27 11.3 0.7 3 7.9 0.0 2.0 1 1 1 2 2 2 0 CpXC protein TFIIS_C PF01096.18 gi|14601410|ref|NP_147947.1| - 1.5 8.8 5.7 11 6.0 1.9 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prim_Zn_Ribbon PF08273.12 gi|14601410|ref|NP_147947.1| - 2.1 8.7 9.0 7 7.0 9.0 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase HalOD2 PF18547.1 gi|14601410|ref|NP_147947.1| - 2.2 8.3 8.8 16 5.5 8.8 2.0 1 1 0 1 1 1 0 Halobacterial output domain 2 RNase_PH PF01138.21 gi|14601411|ref|NP_147948.1| - 6.4e-32 110.8 0.0 9.2e-31 107.1 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|14601411|ref|NP_147948.1| - 8.3e-12 45.0 0.7 1.6e-11 44.0 0.2 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|14601412|ref|NP_147949.1| - 6.5e-37 127.0 0.0 9e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|14601412|ref|NP_147949.1| - 3.7e-10 39.7 0.2 5.9e-10 39.0 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|14601413|ref|NP_147950.1| - 2.4e-06 27.8 0.0 4.7e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|14601413|ref|NP_147950.1| - 5.9e-06 26.0 0.1 1.9e-05 24.4 0.1 1.8 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|14601413|ref|NP_147950.1| - 0.00038 20.2 0.3 0.0008 19.2 0.3 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|14601413|ref|NP_147950.1| - 0.00041 20.6 0.2 0.0057 17.0 0.0 2.7 3 0 0 3 3 3 1 S1 RNA binding domain Proteasome PF00227.26 gi|14601414|ref|NP_147951.1| - 2.7e-60 203.1 0.1 1.1e-59 201.1 0.0 1.8 1 1 1 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|14601414|ref|NP_147951.1| - 6.6e-11 41.7 2.2 7.4e-11 41.5 0.5 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SabA_adhesion PF18304.1 gi|14601414|ref|NP_147951.1| - 0.035 13.3 0.0 0.047 12.9 0.0 1.1 1 0 0 1 1 1 0 SabA N-terminal extracellular adhesion domain RNase_P_p30 PF01876.16 gi|118431461|ref|NP_147952.2| - 3.9e-12 46.1 0.0 9.6e-12 44.8 0.0 1.6 1 1 0 1 1 1 1 RNase P subunit p30 DraK_HK_N PF18092.1 gi|118431461|ref|NP_147952.2| - 0.064 13.7 0.2 0.11 12.9 0.2 1.3 1 0 0 1 1 1 0 DraK Histidine Kinase N-terminal domain Transketolase_C PF02780.20 gi|118431461|ref|NP_147952.2| - 0.083 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain RNA_binding PF01877.17 gi|118431462|ref|NP_147953.2| - 6.4e-37 126.5 0.1 8e-37 126.2 0.1 1.1 1 0 0 1 1 1 1 RNA binding Bac_A_amyl_C PF18612.1 gi|118431462|ref|NP_147953.2| - 0.039 13.7 0.1 0.074 12.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial Alpha amylase C-terminal domain Planc_extracel PF07595.12 gi|118431462|ref|NP_147953.2| - 0.12 12.2 1.1 0.35 10.8 0.4 2.0 2 0 0 2 2 2 0 Planctomycete extracellular Ribosomal_L15e PF00827.17 gi|14601417|ref|NP_147954.1| - 2.6e-83 278.4 6.1 3.3e-83 278.1 6.1 1.1 1 0 0 1 1 1 1 Ribosomal L15 E1-E2_ATPase PF00122.20 gi|118431463|ref|NP_147955.2| - 2.6e-54 183.5 0.9 4.8e-54 182.6 0.1 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|118431463|ref|NP_147955.2| - 3.9e-45 154.7 3.0 8.7e-45 153.6 1.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|118431463|ref|NP_147955.2| - 2.8e-24 85.3 1.3 4.2e-12 46.3 0.1 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.7 gi|118431463|ref|NP_147955.2| - 0.00023 21.7 0.1 0.00077 19.9 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|118431463|ref|NP_147955.2| - 0.00033 20.5 0.1 0.0031 17.3 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|118431463|ref|NP_147955.2| - 0.0047 17.0 0.0 0.058 13.5 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DAHP_snth_FXD PF18152.1 gi|118431463|ref|NP_147955.2| - 0.049 13.5 0.5 23 4.9 0.0 4.1 4 1 0 4 4 4 0 DAHP synthase ferredoxin-like domain Cupin_3 PF05899.12 gi|118431463|ref|NP_147955.2| - 0.05 13.3 1.3 4.5 7.0 0.5 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF861) HAD_2 PF13419.6 gi|118431463|ref|NP_147955.2| - 0.11 12.6 0.1 1.4 8.9 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Ferritin PF00210.24 gi|14601419|ref|NP_147956.1| - 2.3e-30 105.4 0.0 2.8e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|14601419|ref|NP_147956.1| - 1.3e-07 32.1 2.0 0.0028 18.0 0.1 2.0 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 gi|14601419|ref|NP_147956.1| - 0.0015 18.8 0.0 0.0019 18.4 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|14601419|ref|NP_147956.1| - 0.019 14.8 0.1 0.96 9.2 0.0 2.0 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF3845 PF12956.7 gi|14601419|ref|NP_147956.1| - 0.099 12.1 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure Pyr_redox_2 PF07992.14 gi|14601420|ref|NP_147957.1| - 8.3e-51 172.9 0.2 1.1e-50 172.6 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|14601420|ref|NP_147957.1| - 4e-33 114.0 0.4 7.4e-33 113.1 0.4 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_oxidored PF12831.7 gi|14601420|ref|NP_147957.1| - 2.5e-12 46.9 4.7 1.6e-07 31.0 0.5 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|14601420|ref|NP_147957.1| - 3.8e-10 40.2 4.9 3.5e-09 37.1 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|14601420|ref|NP_147957.1| - 7e-10 38.5 12.6 1.1e-05 24.7 4.8 3.6 3 1 1 4 4 4 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|14601420|ref|NP_147957.1| - 8e-08 31.9 0.5 0.00039 19.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|14601420|ref|NP_147957.1| - 3.4e-06 26.4 1.6 3.4e-06 26.4 1.6 2.9 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|14601420|ref|NP_147957.1| - 0.00034 19.4 7.8 0.0018 17.1 3.0 2.7 2 1 1 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|14601420|ref|NP_147957.1| - 0.012 14.9 2.0 1.7 7.8 0.3 2.5 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|14601420|ref|NP_147957.1| - 0.13 11.5 3.3 0.64 9.3 1.8 2.4 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|14601420|ref|NP_147957.1| - 0.44 9.7 6.6 1.9 7.7 0.1 2.3 2 0 0 2 2 2 0 FAD binding domain DAO PF01266.24 gi|14601420|ref|NP_147957.1| - 0.68 9.4 10.6 0.5 9.9 6.2 2.5 2 2 1 3 3 3 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|14601420|ref|NP_147957.1| - 5.2 6.9 7.1 0.92 9.4 0.1 2.5 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|14601420|ref|NP_147957.1| - 5.9 5.8 5.6 2.9 6.8 2.5 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|14601420|ref|NP_147957.1| - 10 6.5 7.6 4 7.8 2.4 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AsnC_trans_reg PF01037.21 gi|118431464|ref|YP_874895.1| - 1.3e-15 57.1 0.3 2e-15 56.5 0.3 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|118431464|ref|YP_874895.1| - 1.1e-14 53.9 1.1 2.2e-14 53.0 0.5 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|118431464|ref|YP_874895.1| - 2.1e-14 52.8 1.2 3.4e-14 52.1 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|118431464|ref|YP_874895.1| - 7.8e-07 28.9 0.2 2.5e-06 27.3 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|118431464|ref|YP_874895.1| - 4.7e-06 26.4 2.9 6.9e-06 25.9 0.7 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|118431464|ref|YP_874895.1| - 8.6e-05 22.5 0.1 0.00016 21.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|118431464|ref|YP_874895.1| - 9.5e-05 22.3 0.2 0.00021 21.1 0.2 1.6 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 gi|118431464|ref|YP_874895.1| - 0.00011 22.0 0.1 0.00019 21.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|118431464|ref|YP_874895.1| - 0.00014 21.5 0.1 0.00026 20.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|118431464|ref|YP_874895.1| - 0.00026 20.8 0.2 0.00036 20.3 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|118431464|ref|YP_874895.1| - 0.00041 20.2 0.1 0.00079 19.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain NapD PF03927.13 gi|118431464|ref|YP_874895.1| - 0.00066 19.7 0.7 0.001 19.1 0.7 1.2 1 0 0 1 1 1 1 NapD protein Sigma70_r4_2 PF08281.12 gi|118431464|ref|YP_874895.1| - 0.00081 19.0 1.4 0.0011 18.6 0.4 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|118431464|ref|YP_874895.1| - 0.00093 18.9 0.9 0.0021 17.8 0.5 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|118431464|ref|YP_874895.1| - 0.0016 18.6 0.2 0.0036 17.4 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|118431464|ref|YP_874895.1| - 0.0018 18.2 0.1 0.0033 17.4 0.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|118431464|ref|YP_874895.1| - 0.0023 17.4 0.2 0.0044 16.5 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 DUF4423 PF14394.6 gi|118431464|ref|YP_874895.1| - 0.0086 15.8 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|118431464|ref|YP_874895.1| - 0.017 15.6 0.2 0.032 14.7 0.2 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|118431464|ref|YP_874895.1| - 0.018 14.9 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Rrf2 PF02082.20 gi|118431464|ref|YP_874895.1| - 0.023 15.0 0.2 0.076 13.4 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_34 PF13601.6 gi|118431464|ref|YP_874895.1| - 0.031 14.5 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|118431464|ref|YP_874895.1| - 0.032 14.0 0.1 0.053 13.3 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DUF2250 PF10007.9 gi|118431464|ref|YP_874895.1| - 0.049 13.7 0.1 0.13 12.4 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.10 gi|118431464|ref|YP_874895.1| - 0.059 13.4 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_1 PF00126.27 gi|118431464|ref|YP_874895.1| - 0.061 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 gi|118431464|ref|YP_874895.1| - 0.062 13.1 0.3 0.21 11.4 0.2 2.0 2 0 0 2 2 1 0 Bacterial regulatory protein, Fis family Put_DNA-bind_N PF06971.13 gi|118431464|ref|YP_874895.1| - 0.064 13.3 0.1 1.2 9.2 0.1 2.8 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus Fe_dep_repress PF01325.19 gi|118431464|ref|YP_874895.1| - 0.065 13.4 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_39 PF14090.6 gi|118431464|ref|YP_874895.1| - 0.085 12.6 0.2 0.28 11.0 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Replic_Relax PF13814.6 gi|118431464|ref|YP_874895.1| - 0.13 12.3 0.1 0.23 11.5 0.1 1.3 1 1 0 1 1 1 0 Replication-relaxation GcrA PF07750.11 gi|118431464|ref|YP_874895.1| - 0.15 12.5 0.1 0.19 12.1 0.1 1.2 1 0 0 1 1 1 0 GcrA cell cycle regulator AA_kinase PF00696.28 gi|118431465|ref|NP_147959.2| - 1.5e-35 122.9 1.9 1.7e-35 122.8 1.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|14601422|ref|NP_147960.1| - 4.1e-31 107.9 0.0 6.9e-31 107.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|14601422|ref|NP_147960.1| - 0.00044 20.5 0.1 0.0028 17.9 0.1 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 gi|14601422|ref|NP_147960.1| - 0.1 13.1 0.0 0.28 11.7 0.0 1.7 2 0 0 2 2 2 0 CoA binding domain Desulfoferrod_N PF06397.12 gi|118431466|ref|YP_874896.1| - 0.039 13.6 4.0 0.65 9.7 0.3 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|118431466|ref|YP_874896.1| - 0.045 13.3 3.7 0.077 12.5 3.7 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|118431466|ref|YP_874896.1| - 0.64 10.1 4.2 0.89 9.6 4.2 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RimK PF08443.11 gi|14601423|ref|NP_147961.1| - 5.1e-27 94.7 0.0 6.5e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|14601423|ref|NP_147961.1| - 1.5e-06 28.4 0.0 2.9e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|14601423|ref|NP_147961.1| - 0.0006 19.1 0.0 0.035 13.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|14601423|ref|NP_147961.1| - 0.0033 17.0 0.0 0.023 14.2 0.0 2.0 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|14601423|ref|NP_147961.1| - 0.0033 17.0 0.0 0.0074 15.9 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|14601423|ref|NP_147961.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Aminotran_3 PF00202.21 gi|14601424|ref|NP_147962.1| - 8e-87 291.5 0.0 3.1e-86 289.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III CCB2_CCB4 PF11152.8 gi|14601424|ref|NP_147962.1| - 0.0059 15.9 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 Cofactor assembly of complex C subunit B, CCB2/CCB4 Aminotran_5 PF00266.19 gi|14601424|ref|NP_147962.1| - 0.015 14.2 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V Peptidase_M20 PF01546.28 gi|77640972|ref|NP_147963.2| - 2e-21 76.6 0.1 1.1e-20 74.2 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|77640972|ref|NP_147963.2| - 3e-12 46.4 0.1 6.3e-12 45.4 0.2 1.6 1 1 0 1 1 1 1 Peptidase dimerisation domain QueC PF06508.13 gi|118431467|ref|NP_147964.2| - 1.4e-39 135.8 0.0 3e-39 134.7 0.0 1.5 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|118431467|ref|NP_147964.2| - 0.00025 20.7 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueF PF14489.6 gi|118431468|ref|NP_147965.2| - 1.9e-10 40.7 0.0 2.3e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.22 gi|118431468|ref|NP_147965.2| - 0.00036 20.0 0.0 0.00038 19.9 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I LEF-9 PF05094.12 gi|118431468|ref|NP_147965.2| - 0.16 10.5 0.0 0.18 10.3 0.0 1.0 1 0 0 1 1 1 0 Late expression factor 9 (LEF-9) TPP_enzyme_C PF02775.21 gi|14601428|ref|NP_147966.1| - 1.2e-29 103.1 0.3 1.9e-29 102.5 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|14601428|ref|NP_147966.1| - 3.4e-20 71.9 0.2 8e-20 70.8 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|118431469|ref|NP_147967.2| - 3.6e-56 190.5 0.1 6.1e-56 189.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|118431469|ref|NP_147967.2| - 4.5e-43 147.4 0.0 9.6e-43 146.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|118431469|ref|NP_147967.2| - 2.7e-11 43.6 0.0 1e-10 41.8 0.0 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|118431469|ref|NP_147967.2| - 5.5e-07 29.5 0.0 1.7e-06 27.9 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|118431469|ref|NP_147967.2| - 0.034 13.8 0.2 0.17 11.5 0.1 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RHH_3 PF12651.7 gi|118431469|ref|NP_147967.2| - 0.038 14.0 1.0 1.4 8.9 0.0 3.3 3 0 0 3 3 3 0 Ribbon-helix-helix domain Lys_export PF03956.13 gi|14601431|ref|NP_147969.1| - 3e-45 154.1 27.3 8.7e-43 146.1 14.7 2.0 1 1 1 2 2 2 2 Lysine exporter LysO DUF389 PF04087.14 gi|118431471|ref|NP_147970.2| - 2.2e-25 89.3 18.4 1.3e-23 83.6 13.3 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF389) NUDIX PF00293.28 gi|118431472|ref|NP_147971.2| - 1.9e-19 70.0 0.7 2.3e-19 69.7 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain tRNA_deacylase PF04414.12 gi|118431473|ref|NP_147972.2| - 7e-63 211.9 0.0 8.2e-63 211.6 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ECH_1 PF00378.20 gi|118431474|ref|NP_147973.2| - 3.6e-72 242.7 0.0 5.6e-72 242.1 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|118431474|ref|NP_147973.2| - 2.1e-64 216.7 2.5 4e-64 215.8 2.5 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|118431474|ref|NP_147973.2| - 2.6e-51 172.2 0.7 1.8e-25 89.4 0.1 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|118431474|ref|NP_147973.2| - 5e-42 144.6 0.3 1.8e-38 132.9 0.0 2.7 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|118431474|ref|NP_147973.2| - 0.00066 19.9 0.2 0.0026 18.0 0.2 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|118431474|ref|NP_147973.2| - 0.014 14.7 0.6 0.061 12.7 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|118431474|ref|NP_147973.2| - 0.053 12.8 0.1 0.094 12.0 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain OAM_alpha PF16552.5 gi|118431474|ref|NP_147973.2| - 0.11 12.4 0.0 19 5.1 0.0 2.9 2 0 0 2 2 2 0 D-ornithine 4,5-aminomutase alpha-subunit Pyr_redox_2 PF07992.14 gi|118431474|ref|NP_147973.2| - 0.14 11.3 0.1 0.26 10.5 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|118431474|ref|NP_147973.2| - 0.17 11.9 2.5 1.6 8.7 0.7 3.3 3 1 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PALP PF00291.25 gi|118431476|ref|NP_147974.2| - 1.8e-54 185.2 2.4 2.5e-54 184.7 2.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.6 gi|118431476|ref|NP_147974.2| - 0.06 13.1 1.3 0.11 12.3 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|118431476|ref|NP_147974.2| - 0.13 12.2 4.4 0.92 9.4 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C3HC4_3 PF13920.6 gi|118431476|ref|NP_147974.2| - 0.13 12.1 0.2 0.22 11.4 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NAD_binding_7 PF13241.6 gi|118431477|ref|NP_147976.2| - 3.3e-20 72.5 0.0 7.4e-20 71.3 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.22 gi|118431477|ref|NP_147976.2| - 0.00088 20.1 0.1 0.0018 19.1 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 gi|118431477|ref|NP_147976.2| - 0.0037 16.6 1.6 0.0063 15.8 1.0 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain PCMT PF01135.19 gi|118431477|ref|NP_147976.2| - 0.0073 16.1 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 2-Hacid_dh_C PF02826.19 gi|118431477|ref|NP_147976.2| - 0.013 14.9 0.0 0.028 13.8 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|118431477|ref|NP_147976.2| - 0.021 14.2 1.0 0.099 12.0 0.9 1.9 2 0 0 2 2 2 0 ThiF family FAD_binding_2 PF00890.24 gi|118431477|ref|NP_147976.2| - 0.032 13.3 2.1 0.052 12.6 2.1 1.3 1 0 0 1 1 1 0 FAD binding domain Semialdhyde_dh PF01118.24 gi|118431477|ref|NP_147976.2| - 0.034 14.6 0.5 0.096 13.1 0.5 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|118431477|ref|NP_147976.2| - 0.039 13.2 1.9 0.059 12.6 1.9 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|118431477|ref|NP_147976.2| - 0.061 13.2 0.4 0.14 12.0 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|118431477|ref|NP_147976.2| - 0.094 12.4 0.2 0.27 10.9 0.2 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA PPR_1 PF12854.7 gi|118431477|ref|NP_147976.2| - 0.1 12.3 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 PPR repeat Glyco_trans_4_5 PF16994.5 gi|118431477|ref|NP_147976.2| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl-transferase family 4 UDPG_MGDP_dh_N PF03721.14 gi|118431477|ref|NP_147976.2| - 0.12 12.0 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|118431477|ref|NP_147976.2| - 0.16 12.0 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.27 gi|118431477|ref|NP_147976.2| - 0.35 11.4 3.1 1.2 9.7 3.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HEM4 PF02602.15 gi|14601439|ref|NP_147977.1| - 1.1e-14 54.3 0.1 1.4e-14 54.1 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Sacchrp_dh_NADP PF03435.18 gi|14601440|ref|NP_147978.1| - 0.038 14.3 0.0 0.054 13.8 0.0 1.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain SpoU_sub_bind PF08032.12 gi|14601440|ref|NP_147978.1| - 0.09 13.1 0.0 2.1 8.7 0.0 2.5 2 1 1 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding DNase-RNase PF02577.14 gi|14601440|ref|NP_147978.1| - 0.18 11.5 0.0 0.95 9.1 0.0 1.9 2 0 0 2 2 2 0 Bifunctional nuclease Aldo_ket_red PF00248.21 gi|118431478|ref|NP_147979.2| - 2.8e-41 141.7 0.0 3.1e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.21 gi|14601442|ref|NP_147980.1| - 4.7e-12 45.4 0.3 6.3e-12 45.0 0.3 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|14601442|ref|NP_147980.1| - 2.7e-05 24.3 0.0 2.7e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|14601442|ref|NP_147980.1| - 4.3e-05 23.8 0.0 5.4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|14601442|ref|NP_147980.1| - 0.0057 16.5 0.1 0.0083 16.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB AsnC_trans_reg2 PF17805.1 gi|118431479|ref|NP_147981.2| - 2.1e-34 117.5 0.1 1.2e-16 60.6 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_24 PF13412.6 gi|118431479|ref|NP_147981.2| - 1.3e-05 24.6 0.0 0.14 11.8 0.0 2.8 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|118431479|ref|NP_147981.2| - 0.00025 20.8 0.0 0.032 14.0 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain LAL_C2 PF18603.1 gi|118431479|ref|NP_147981.2| - 0.0073 16.4 0.0 0.86 9.8 0.0 3.0 3 0 0 3 3 3 1 L-amino acid ligase C-terminal domain 2 MarR_2 PF12802.7 gi|118431479|ref|NP_147981.2| - 0.0085 16.0 0.0 0.14 12.0 0.0 2.5 2 0 0 2 2 2 1 MarR family Helicase_C_3 PF13625.6 gi|118431479|ref|NP_147981.2| - 0.04 14.1 0.0 15 5.7 0.0 2.6 3 0 0 3 3 3 0 Helicase conserved C-terminal domain HTH_36 PF13730.6 gi|118431479|ref|NP_147981.2| - 0.049 13.6 0.0 8.9 6.4 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|118431479|ref|NP_147981.2| - 0.076 13.1 0.0 3.8 7.6 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3791 PF12668.7 gi|118431479|ref|NP_147981.2| - 0.076 13.1 0.0 75 3.5 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3791) LexA_DNA_bind PF01726.16 gi|118431479|ref|NP_147981.2| - 0.14 11.9 0.0 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain HTH_1 PF00126.27 gi|118431479|ref|NP_147981.2| - 0.15 12.1 0.0 16 5.5 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|118431479|ref|NP_147981.2| - 0.17 11.9 0.0 0.73 9.9 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain PALP PF00291.25 gi|118431480|ref|NP_147982.2| - 1.2e-84 284.2 5.2 1.6e-84 283.8 5.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|118431480|ref|NP_147982.2| - 0.0055 16.4 0.0 0.018 14.8 0.0 2.0 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|118431480|ref|NP_147982.2| - 0.022 14.7 0.0 0.063 13.3 0.0 1.8 1 1 0 1 1 1 0 ACT domain Ribonuc_L-PSP PF01042.21 gi|118431481|ref|NP_147983.2| - 1.1e-39 135.2 0.0 1.2e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DOT1 PF08123.13 gi|118431482|ref|NP_147984.2| - 7.7e-11 41.9 0.0 4e-09 36.3 0.0 2.1 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.6 gi|118431482|ref|NP_147984.2| - 5.7e-10 39.8 0.0 7.5e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|118431482|ref|NP_147984.2| - 6.7e-08 32.6 0.0 8.8e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|118431482|ref|NP_147984.2| - 6.7e-08 31.9 0.0 8.3e-08 31.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|118431482|ref|NP_147984.2| - 1.7e-07 31.1 0.1 2.5e-07 30.6 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|118431482|ref|NP_147984.2| - 1.2e-06 29.0 0.0 1.6e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|118431482|ref|NP_147984.2| - 3.5e-05 23.2 0.0 4.4e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain UPF0020 PF01170.18 gi|118431482|ref|NP_147984.2| - 3.8e-05 23.5 0.1 0.0013 18.4 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 gi|118431482|ref|NP_147984.2| - 4.2e-05 23.0 0.0 5.1e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|118431482|ref|NP_147984.2| - 0.00011 22.1 0.0 0.00014 21.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|118431482|ref|NP_147984.2| - 0.00013 21.5 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|118431482|ref|NP_147984.2| - 0.00013 21.6 0.0 0.00017 21.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|118431482|ref|NP_147984.2| - 0.00076 18.9 0.0 0.001 18.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TrmK PF04816.12 gi|118431482|ref|NP_147984.2| - 0.0014 18.2 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase PrmA PF06325.13 gi|118431482|ref|NP_147984.2| - 0.0014 18.0 0.0 0.0018 17.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|118431482|ref|NP_147984.2| - 0.0044 17.7 0.0 0.0058 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|118431482|ref|NP_147984.2| - 0.0057 16.7 0.0 0.0069 16.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_20 PF12147.8 gi|118431482|ref|NP_147984.2| - 0.0073 15.5 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|118431482|ref|NP_147984.2| - 0.011 15.4 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|118431482|ref|NP_147984.2| - 0.017 15.0 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|118431482|ref|NP_147984.2| - 0.037 13.6 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|118431482|ref|NP_147984.2| - 0.041 14.9 0.0 0.055 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|118431482|ref|NP_147984.2| - 0.13 11.8 0.1 0.16 11.6 0.1 1.2 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW MethyltransfD12 PF02086.15 gi|118431482|ref|NP_147984.2| - 0.14 11.8 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase ATPase PF06745.13 gi|118431483|ref|NP_147985.2| - 4.9e-88 294.4 0.0 5.5e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|118431483|ref|NP_147985.2| - 6.2e-06 25.1 0.0 1.3e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|118431483|ref|NP_147985.2| - 3.9e-05 23.3 0.0 5.7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|118431483|ref|NP_147985.2| - 0.021 13.9 0.0 0.032 13.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PPV_E1_C PF00519.17 gi|118431483|ref|NP_147985.2| - 0.047 12.5 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase Rad51 PF08423.11 gi|118431483|ref|NP_147985.2| - 0.059 12.6 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad51 IMPDH PF00478.25 gi|118431484|ref|NP_147986.2| - 1.6e-105 353.0 0.0 1.8e-105 352.8 0.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|118431484|ref|NP_147986.2| - 4.9e-09 36.0 1.5 0.00043 19.8 2.0 2.6 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|118431484|ref|NP_147986.2| - 2.1e-07 30.3 7.2 6.4e-07 28.7 5.8 2.2 1 1 1 2 2 2 1 FMN-dependent dehydrogenase DHO_dh PF01180.21 gi|118431484|ref|NP_147986.2| - 6.5e-05 22.3 2.1 0.00011 21.6 2.1 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|118431484|ref|NP_147986.2| - 9.6e-05 21.7 2.4 0.00014 21.2 2.4 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|118431484|ref|NP_147986.2| - 0.025 14.0 1.6 0.17 11.3 1.7 2.0 1 1 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|118431484|ref|NP_147986.2| - 0.026 13.9 1.5 0.058 12.7 1.5 1.5 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG DUF296 PF03479.15 gi|118431485|ref|NP_147988.2| - 4.3e-18 65.7 0.4 5.1e-18 65.4 0.4 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain CBS PF00571.28 gi|118431486|ref|NP_147989.2| - 2.6e-13 50.2 0.1 5.2e-06 26.8 0.0 4.1 4 0 0 4 4 4 3 CBS domain GHMP_kinases_C PF08544.13 gi|14601452|ref|NP_147990.1| - 4.2e-06 27.0 0.1 8.4e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|14601452|ref|NP_147990.1| - 0.0089 16.3 0.7 0.02 15.1 0.7 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain NTP_transf_3 PF12804.7 gi|118431487|ref|NP_147991.2| - 1.7e-10 41.5 0.5 3e-10 40.7 0.5 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain CDP-OH_P_transf PF01066.21 gi|118431488|ref|NP_147993.2| - 7.9e-11 42.6 2.7 7.9e-11 42.6 2.7 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Inos-1-P_synth PF01658.17 gi|14601456|ref|NP_147994.1| - 3.9e-20 72.1 0.0 5.7e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Radical_SAM_C PF16199.5 gi|14601456|ref|NP_147994.1| - 0.041 13.9 0.1 0.099 12.7 0.1 1.6 1 0 0 1 1 1 0 Radical_SAM C-terminal domain Antimicrobial21 PF14861.6 gi|118431489|ref|YP_874899.1| - 0.0034 17.1 3.4 0.0059 16.3 3.4 1.4 1 0 0 1 1 1 1 Plant antimicrobial peptide zf-Tim10_DDP PF02953.15 gi|118431489|ref|YP_874899.1| - 0.0079 15.8 1.1 0.71 9.6 0.1 2.2 2 0 0 2 2 2 2 Tim10/DDP family zinc finger UPF0047 PF01894.17 gi|118431490|ref|NP_147996.2| - 6.6e-33 113.3 0.0 8.5e-33 112.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Rep_fac_C PF08542.11 gi|118431491|ref|NP_147997.2| - 2.2e-22 79.3 0.2 7.9e-22 77.5 0.0 2.1 3 0 0 3 3 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|118431491|ref|NP_147997.2| - 1.9e-16 60.3 0.1 2.7e-13 50.0 0.1 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|118431491|ref|NP_147997.2| - 3.7e-16 59.8 0.0 7.6e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|118431491|ref|NP_147997.2| - 3.4e-08 33.4 0.0 8.8e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|118431491|ref|NP_147997.2| - 6.5e-08 32.7 0.0 1.5e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|118431491|ref|NP_147997.2| - 4.5e-07 30.4 0.1 0.0065 16.9 0.0 2.7 2 1 1 3 3 2 2 AAA ATPase domain AAA_3 PF07726.11 gi|118431491|ref|NP_147997.2| - 6e-07 29.4 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|118431491|ref|NP_147997.2| - 1.2e-06 28.7 0.5 7.5e-05 23.0 0.1 2.8 1 1 0 2 2 2 1 AAA C-terminal domain AAA_22 PF13401.6 gi|118431491|ref|NP_147997.2| - 3.1e-06 27.5 0.1 0.071 13.4 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|118431491|ref|NP_147997.2| - 7.7e-06 26.5 0.1 0.00011 22.8 0.0 2.5 1 1 1 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|118431491|ref|NP_147997.2| - 1.6e-05 24.9 0.0 0.0001 22.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DNA_pol3_delta PF06144.13 gi|118431491|ref|NP_147997.2| - 2.6e-05 24.1 0.0 0.00021 21.1 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 gi|118431491|ref|NP_147997.2| - 0.00014 21.3 0.0 0.0044 16.4 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|118431491|ref|NP_147997.2| - 0.00022 21.3 0.0 0.00057 19.9 0.0 1.7 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|118431491|ref|NP_147997.2| - 0.00079 19.5 0.0 0.0022 18.0 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_28 PF13521.6 gi|118431491|ref|NP_147997.2| - 0.0011 19.2 0.0 0.0024 18.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|118431491|ref|NP_147997.2| - 0.0012 18.4 0.1 0.2 11.1 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_7 PF12775.7 gi|118431491|ref|NP_147997.2| - 0.0012 18.4 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|118431491|ref|NP_147997.2| - 0.0013 18.0 0.0 0.0025 17.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|118431491|ref|NP_147997.2| - 0.0013 17.8 0.0 0.0093 15.0 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|118431491|ref|NP_147997.2| - 0.0013 18.5 0.0 0.003 17.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|118431491|ref|NP_147997.2| - 0.0016 17.9 0.0 0.0031 16.9 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_33 PF13671.6 gi|118431491|ref|NP_147997.2| - 0.0021 18.2 0.0 0.0053 16.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|118431491|ref|NP_147997.2| - 0.0025 17.9 0.0 0.014 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) TniB PF05621.11 gi|118431491|ref|NP_147997.2| - 0.003 17.0 0.1 0.055 12.9 0.0 2.4 1 1 1 2 2 2 1 Bacterial TniB protein AAA_25 PF13481.6 gi|118431491|ref|NP_147997.2| - 0.0037 16.9 0.1 0.052 13.1 0.0 2.7 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|118431491|ref|NP_147997.2| - 0.0052 17.1 0.0 0.013 15.9 0.0 1.7 1 1 0 1 1 1 1 RNA helicase KTI12 PF08433.10 gi|118431491|ref|NP_147997.2| - 0.0052 16.3 0.0 0.0092 15.5 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Sigma54_activat PF00158.26 gi|118431491|ref|NP_147997.2| - 0.0055 16.4 0.1 0.19 11.4 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|118431491|ref|NP_147997.2| - 0.0064 16.2 0.3 0.096 12.4 0.0 2.7 2 2 1 3 3 3 1 AAA domain AAA_11 PF13086.6 gi|118431491|ref|NP_147997.2| - 0.0069 16.2 0.0 0.013 15.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|118431491|ref|NP_147997.2| - 0.0098 15.6 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase TIP49 PF06068.13 gi|118431491|ref|NP_147997.2| - 0.02 14.1 0.0 0.05 12.8 0.0 1.6 2 0 0 2 2 2 0 TIP49 P-loop domain NTPase_1 PF03266.15 gi|118431491|ref|NP_147997.2| - 0.025 14.5 0.0 0.37 10.7 0.0 2.2 1 1 1 2 2 2 0 NTPase APS_kinase PF01583.20 gi|118431491|ref|NP_147997.2| - 0.03 14.2 0.0 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|118431491|ref|NP_147997.2| - 0.031 14.0 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|118431491|ref|NP_147997.2| - 0.041 13.1 0.1 0.54 9.4 0.1 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|118431491|ref|NP_147997.2| - 0.044 13.1 0.0 0.31 10.3 0.0 2.0 1 1 1 2 2 2 0 KaiC NACHT PF05729.12 gi|118431491|ref|NP_147997.2| - 0.049 13.6 0.0 0.24 11.3 0.0 2.1 1 1 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|118431491|ref|NP_147997.2| - 0.051 13.9 0.1 0.42 10.9 0.0 2.1 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|118431491|ref|NP_147997.2| - 0.053 12.8 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|118431491|ref|NP_147997.2| - 0.079 13.1 0.1 0.28 11.3 0.1 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.29 gi|118431491|ref|NP_147997.2| - 0.11 12.3 0.0 15 5.3 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase ATP_bind_1 PF03029.17 gi|118431491|ref|NP_147997.2| - 0.11 12.3 0.1 8.1 6.2 0.0 2.4 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein DUF5613 PF18467.1 gi|118431491|ref|NP_147997.2| - 0.11 12.9 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5613) Torsin PF06309.11 gi|118431491|ref|NP_147997.2| - 0.14 12.3 0.0 0.45 10.6 0.0 1.8 2 0 0 2 2 1 0 Torsin AraC_N PF06719.13 gi|118431491|ref|NP_147997.2| - 0.14 11.8 0.4 5.3 6.7 0.1 2.7 2 1 0 2 2 2 0 AraC-type transcriptional regulator N-terminus SRP54 PF00448.22 gi|118431491|ref|NP_147997.2| - 0.16 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|118431492|ref|NP_147998.2| - 3e-17 63.3 0.0 8.2e-17 61.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|118431492|ref|NP_147998.2| - 5.8e-08 32.6 0.0 1e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|118431492|ref|NP_147998.2| - 7e-07 29.5 0.0 1.3e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|118431492|ref|NP_147998.2| - 2.1e-06 27.1 0.0 1.2e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|118431492|ref|NP_147998.2| - 4e-06 27.3 0.0 3.2e-05 24.4 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.18 gi|118431492|ref|NP_147998.2| - 4.6e-06 26.6 0.0 2e-05 24.6 0.0 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|118431492|ref|NP_147998.2| - 7e-06 26.1 0.0 1.6e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|118431492|ref|NP_147998.2| - 5.1e-05 23.3 0.0 8.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|118431492|ref|NP_147998.2| - 9.9e-05 22.9 0.0 0.00032 21.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|118431492|ref|NP_147998.2| - 0.00014 22.1 0.1 0.00045 20.5 0.1 1.9 1 0 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 gi|118431492|ref|NP_147998.2| - 0.00022 21.1 0.0 0.00045 20.0 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|118431492|ref|NP_147998.2| - 0.00035 20.3 0.0 0.00074 19.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|118431492|ref|NP_147998.2| - 0.00059 19.9 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|118431492|ref|NP_147998.2| - 0.00068 19.9 0.0 0.013 15.8 0.0 2.7 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|118431492|ref|NP_147998.2| - 0.0025 18.2 0.0 0.0067 16.8 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.12 gi|118431492|ref|NP_147998.2| - 0.0048 16.2 0.0 0.01 15.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.12 gi|118431492|ref|NP_147998.2| - 0.0069 16.3 0.0 0.22 11.4 0.0 2.7 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|118431492|ref|NP_147998.2| - 0.0097 15.8 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_17 PF13207.6 gi|118431492|ref|NP_147998.2| - 0.012 16.0 0.2 0.046 14.2 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|118431492|ref|NP_147998.2| - 0.02 14.5 0.0 0.072 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|118431492|ref|NP_147998.2| - 0.023 14.2 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|118431492|ref|NP_147998.2| - 0.027 13.6 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|118431492|ref|NP_147998.2| - 0.034 14.1 0.0 0.31 10.9 0.0 2.0 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|118431492|ref|NP_147998.2| - 0.036 13.9 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|118431492|ref|NP_147998.2| - 0.048 14.2 0.0 0.22 12.0 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_11 PF13086.6 gi|118431492|ref|NP_147998.2| - 0.066 13.0 0.0 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|118431492|ref|NP_147998.2| - 0.068 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|118431492|ref|NP_147998.2| - 0.084 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|118431492|ref|NP_147998.2| - 0.18 11.3 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CDP-OH_P_transf PF01066.21 gi|118431493|ref|NP_148000.2| - 9e-10 39.2 1.0 9e-10 39.2 1.0 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Glyco_trans_1_4 PF13692.6 gi|118431494|ref|NP_148002.2| - 4.3e-07 30.4 0.0 1.2e-06 29.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|118431494|ref|NP_148002.2| - 1.5e-05 25.5 3.7 2.9e-05 24.5 0.6 2.6 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|118431494|ref|NP_148002.2| - 6.3e-05 23.0 0.4 0.00042 20.3 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|118431494|ref|NP_148002.2| - 0.04 13.5 0.0 0.28 10.7 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferases group 1 FUN14 PF04930.15 gi|118431495|ref|NP_148003.2| - 8.8e-15 54.9 7.8 1.1e-14 54.6 7.8 1.1 1 0 0 1 1 1 1 FUN14 family DUF3464 PF11947.8 gi|118431495|ref|NP_148003.2| - 0.013 15.2 1.0 0.013 15.2 1.0 1.6 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 Radical_SAM PF04055.21 gi|118431496|ref|NP_148004.2| - 1.2e-28 100.6 0.2 4.1e-28 98.9 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|118431496|ref|NP_148004.2| - 1.5e-20 73.0 0.0 3.1e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|118431496|ref|NP_148004.2| - 3.5e-13 49.3 0.0 7.2e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 TRAM domain eIF-5_eIF-2B PF01873.17 gi|118431497|ref|NP_148005.2| - 7.8e-34 116.1 0.1 9.9e-34 115.7 0.1 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|118431497|ref|NP_148005.2| - 0.00033 21.0 0.7 0.00058 20.2 0.7 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|118431497|ref|NP_148005.2| - 0.0044 17.0 0.3 0.0079 16.2 0.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain BTB_3 PF16017.5 gi|118431497|ref|NP_148005.2| - 0.0079 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 BTB/POZ domain TF_Zn_Ribbon PF08271.12 gi|118431497|ref|NP_148005.2| - 0.01 15.3 0.3 0.022 14.2 0.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding GATA PF00320.27 gi|118431497|ref|NP_148005.2| - 0.011 15.4 0.5 0.017 14.7 0.5 1.3 1 0 0 1 1 1 0 GATA zinc finger OrfB_Zn_ribbon PF07282.11 gi|118431497|ref|NP_148005.2| - 0.016 15.1 0.2 0.031 14.2 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|118431497|ref|NP_148005.2| - 0.019 14.4 2.0 0.41 10.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|118431497|ref|NP_148005.2| - 0.02 14.8 2.6 0.18 11.8 2.1 2.6 2 1 1 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|118431497|ref|NP_148005.2| - 0.024 14.8 0.3 0.68 10.2 0.0 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain HTH_38 PF13936.6 gi|118431497|ref|NP_148005.2| - 0.036 13.8 0.1 0.06 13.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Elf1 PF05129.13 gi|118431497|ref|NP_148005.2| - 0.037 14.1 0.6 0.062 13.4 0.6 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like YhfH PF14149.6 gi|118431497|ref|NP_148005.2| - 0.06 13.3 1.5 0.13 12.3 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|118431497|ref|NP_148005.2| - 0.089 12.9 2.8 3.5 7.8 0.2 2.3 1 1 0 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|118431497|ref|NP_148005.2| - 0.14 11.9 1.5 12 5.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF3797 PF12677.7 gi|118431497|ref|NP_148005.2| - 0.15 12.0 0.6 0.39 10.6 0.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) zf-RRN7 PF11781.8 gi|118431497|ref|NP_148005.2| - 0.17 11.6 1.1 19 5.1 0.1 2.5 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF678 PF05077.12 gi|118431497|ref|NP_148005.2| - 0.3 11.2 1.4 11 6.2 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zf-NADH-PPase PF09297.11 gi|118431497|ref|NP_148005.2| - 0.58 9.9 3.6 2.7 7.7 3.6 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|118431497|ref|NP_148005.2| - 1.1 9.3 3.7 32 4.6 0.6 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF1451 PF07295.11 gi|118431497|ref|NP_148005.2| - 1.1 9.3 5.4 19 5.2 5.4 2.4 1 1 0 1 1 1 0 Zinc-ribbon containing domain RNA_POL_M_15KD PF02150.16 gi|118431497|ref|NP_148005.2| - 6.7 6.7 6.9 2 8.3 1.9 2.4 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Acetyltransf_6 PF13480.7 gi|14601468|ref|NP_148006.1| - 0.00064 19.9 1.6 0.0015 18.7 1.6 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|118431498|ref|NP_148007.2| - 2.4e-10 41.0 0.0 4.5e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|118431498|ref|NP_148007.2| - 3e-06 27.6 0.0 5.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|118431498|ref|NP_148007.2| - 0.0003 20.9 0.0 0.00051 20.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ThiG PF05690.14 gi|118431499|ref|NP_148008.2| - 2.7e-06 26.9 3.9 4.1e-06 26.3 3.7 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|118431499|ref|NP_148008.2| - 6.1e-06 25.6 0.0 1.6e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase TIM PF00121.18 gi|118431499|ref|NP_148008.2| - 3e-05 23.5 0.0 0.00012 21.6 0.0 1.8 1 1 1 2 2 2 1 Triosephosphate isomerase FMN_dh PF01070.18 gi|118431499|ref|NP_148008.2| - 0.0024 16.9 2.2 0.0046 16.0 2.2 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PcrB PF01884.17 gi|118431499|ref|NP_148008.2| - 0.0056 16.2 0.6 0.16 11.4 0.5 2.2 1 1 0 2 2 2 1 PcrB family His_biosynth PF00977.21 gi|118431499|ref|NP_148008.2| - 0.0092 15.5 0.1 0.017 14.6 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|118431499|ref|NP_148008.2| - 0.12 11.7 5.9 0.29 10.5 6.1 1.5 1 1 0 1 1 1 0 Nitronate monooxygenase Helicase_RecD PF05127.14 gi|14601473|ref|NP_148011.1| - 1.3e-37 129.4 0.0 2e-37 128.8 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|14601473|ref|NP_148011.1| - 1.6e-18 67.0 0.4 3.1e-08 33.3 0.0 3.3 2 1 1 3 3 3 3 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.25 gi|14601473|ref|NP_148011.1| - 1.4e-09 38.2 0.1 2.3e-08 34.3 0.0 2.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|14601473|ref|NP_148011.1| - 5.1e-09 36.1 0.0 2.5e-08 33.9 0.0 2.1 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|14601473|ref|NP_148011.1| - 1.3e-07 31.9 0.0 3.3e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.6 gi|14601473|ref|NP_148011.1| - 0.0006 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF1726 PF08351.11 gi|14601473|ref|NP_148011.1| - 0.0037 17.2 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) AAA_16 PF13191.6 gi|14601473|ref|NP_148011.1| - 0.0053 17.2 0.4 0.08 13.3 0.2 2.9 4 0 0 4 4 4 1 AAA ATPase domain Acetyltransf_9 PF13527.7 gi|14601473|ref|NP_148011.1| - 0.027 14.6 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|14601473|ref|NP_148011.1| - 0.029 14.3 0.1 0.068 13.2 0.1 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|14601473|ref|NP_148011.1| - 0.095 12.8 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF996 PF06195.13 gi|118431501|ref|NP_148012.2| - 4.4e-34 117.7 20.2 4.4e-34 117.7 20.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF996) CopD PF05425.13 gi|14601475|ref|NP_148013.1| - 0.00031 21.1 7.5 0.00031 21.1 7.5 2.1 1 1 1 2 2 2 1 Copper resistance protein D DUF2269 PF10027.9 gi|14601475|ref|NP_148013.1| - 0.0046 17.0 5.6 0.0046 17.0 5.6 2.1 1 1 0 2 2 2 1 Predicted integral membrane protein (DUF2269) UPF0093 PF03653.13 gi|14601475|ref|NP_148013.1| - 0.098 12.9 3.1 0.95 9.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0093) EMP70 PF02990.16 gi|14601475|ref|NP_148013.1| - 0.11 11.1 0.1 0.14 10.8 0.1 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 Peptidase_S9 PF00326.21 gi|118431502|ref|NP_148014.2| - 1.8e-41 142.0 0.0 1.8e-40 138.7 0.0 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|118431502|ref|NP_148014.2| - 6.2e-12 45.7 0.2 4.6e-11 42.8 0.1 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|118431502|ref|NP_148014.2| - 9e-10 38.2 0.3 3.9e-09 36.1 0.1 2.1 2 1 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|118431502|ref|NP_148014.2| - 3.6e-09 37.6 8.3 1.2e-07 32.5 1.9 3.6 2 2 1 3 3 3 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|118431502|ref|NP_148014.2| - 5e-07 29.6 0.3 1.6e-06 27.9 0.3 1.7 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|118431502|ref|NP_148014.2| - 2.4e-06 27.3 0.0 3.9e-05 23.3 0.0 2.7 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 gi|118431502|ref|NP_148014.2| - 0.011 15.6 0.5 0.058 13.2 0.5 2.0 1 1 0 1 1 1 0 alpha/beta hydrolase fold DUF5010 PF16402.5 gi|118431502|ref|NP_148014.2| - 0.075 11.8 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) LIP PF03583.14 gi|118431502|ref|NP_148014.2| - 0.09 12.1 1.6 0.11 11.7 0.3 1.8 2 0 0 2 2 2 0 Secretory lipase ABC_tran PF00005.27 gi|118431503|ref|NP_148015.2| - 6.6e-27 94.7 0.0 8.8e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431503|ref|NP_148015.2| - 2.2e-14 54.0 0.0 1.3e-08 35.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431503|ref|NP_148015.2| - 2.1e-06 27.3 0.0 0.037 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|118431503|ref|NP_148015.2| - 0.00074 19.3 0.2 0.0032 17.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|118431503|ref|NP_148015.2| - 0.0018 18.0 0.1 0.0034 17.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|118431503|ref|NP_148015.2| - 0.0028 18.2 0.0 0.0041 17.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|118431503|ref|NP_148015.2| - 0.011 15.7 0.0 0.049 13.5 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.6 gi|118431503|ref|NP_148015.2| - 0.018 15.5 0.1 0.036 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATP-synt_ab PF00006.25 gi|118431503|ref|NP_148015.2| - 0.029 14.0 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 gi|118431503|ref|NP_148015.2| - 0.054 13.2 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|118431503|ref|NP_148015.2| - 0.055 14.2 0.0 0.34 11.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) AAA_5 PF07728.14 gi|118431503|ref|NP_148015.2| - 0.077 13.0 0.2 1.5 8.8 0.1 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|118431503|ref|NP_148015.2| - 0.078 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|118431503|ref|NP_148015.2| - 0.08 13.2 0.1 0.23 11.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|118431503|ref|NP_148015.2| - 0.08 10.4 0.0 0.11 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA PF00004.29 gi|118431503|ref|NP_148015.2| - 0.085 13.3 0.0 0.33 11.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|118431503|ref|NP_148015.2| - 0.12 12.7 0.0 0.89 9.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|118431503|ref|NP_148015.2| - 0.14 11.9 0.0 8 6.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|118431503|ref|NP_148015.2| - 0.15 11.8 0.2 0.21 11.3 0.2 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|118431503|ref|NP_148015.2| - 0.18 12.0 0.0 0.59 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|118431503|ref|NP_148015.2| - 0.22 11.1 0.0 0.65 9.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|118431503|ref|NP_148015.2| - 0.24 11.0 0.1 0.39 10.3 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_3 PF12698.7 gi|118431504|ref|NP_148016.2| - 1.3e-11 44.2 7.1 4.8e-11 42.4 7.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|118431504|ref|NP_148016.2| - 0.00022 20.7 9.4 0.00046 19.7 5.9 2.1 2 0 0 2 2 2 1 ABC-2 type transporter Voltage_CLC PF00654.20 gi|14601479|ref|NP_148017.1| - 1.7e-21 76.9 15.7 2e-21 76.7 15.7 1.1 1 0 0 1 1 1 1 Voltage gated chloride channel CBS PF00571.28 gi|14601479|ref|NP_148017.1| - 1.5e-12 47.7 0.7 3.8e-06 27.3 0.1 2.5 2 0 0 2 2 2 2 CBS domain Voltage_CLC PF00654.20 gi|118431505|ref|NP_148018.2| - 8.4e-48 163.4 4.1 8.4e-48 163.4 4.1 2.1 2 0 0 2 2 2 2 Voltage gated chloride channel ADH_zinc_N PF00107.26 gi|118431506|ref|NP_148020.2| - 1.4e-18 67.1 0.7 3.6e-18 65.8 0.0 1.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|118431506|ref|NP_148020.2| - 6.9e-11 42.0 0.1 2.2e-08 34.0 0.0 3.1 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|118431506|ref|NP_148020.2| - 9.5e-11 42.9 0.1 1.5e-10 42.3 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|118431506|ref|NP_148020.2| - 6.3e-06 25.8 0.2 8.7e-06 25.4 0.2 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus adh_short PF00106.25 gi|118431506|ref|NP_148020.2| - 0.0011 18.4 0.1 0.0028 17.2 0.1 1.7 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|118431506|ref|NP_148020.2| - 0.022 14.7 0.2 0.042 13.7 0.2 1.5 1 0 0 1 1 1 0 NAD(P)H-binding FAF PF11250.8 gi|118431506|ref|NP_148020.2| - 0.03 14.6 0.5 0.08 13.2 0.5 1.8 1 0 0 1 1 1 0 Fantastic Four meristem regulator AlaDh_PNT_C PF01262.21 gi|118431506|ref|NP_148020.2| - 0.037 13.3 0.7 0.054 12.8 0.7 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|118431506|ref|NP_148020.2| - 0.094 12.2 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|118431506|ref|NP_148020.2| - 0.2 10.7 0.4 7.1 5.6 0.1 2.6 1 1 2 3 3 3 0 RmlD substrate binding domain Mrr_N PF14338.6 gi|14601483|ref|NP_148021.1| - 2.6e-10 40.3 0.9 8.4e-10 38.6 0.2 2.2 2 0 0 2 2 2 1 Mrr N-terminal domain HSDR_N PF04313.14 gi|14601483|ref|NP_148021.1| - 8.7e-06 25.8 0.1 0.08 12.9 0.1 2.8 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|14601483|ref|NP_148021.1| - 7.3e-05 22.7 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HARE-HTH PF05066.13 gi|14601483|ref|NP_148021.1| - 0.0013 19.1 0.1 0.0032 17.8 0.1 1.7 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain MarR PF01047.22 gi|14601483|ref|NP_148021.1| - 0.051 13.5 0.6 5 7.1 0.0 3.2 3 0 0 3 3 3 0 MarR family HTH_12 PF08461.10 gi|14601483|ref|NP_148021.1| - 0.15 12.0 0.5 16 5.5 0.1 2.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain ParE_toxin PF05016.15 gi|118431508|ref|YP_874901.1| - 5e-12 46.3 0.2 6.1e-12 46.0 0.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|118431508|ref|YP_874901.1| - 1.5e-10 40.9 0.0 1.9e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Gp49 PF05973.14 gi|118431508|ref|YP_874901.1| - 0.02 15.1 0.0 0.023 14.8 0.0 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) HigB_toxin PF09907.9 gi|118431508|ref|YP_874901.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system HTH_23 PF13384.6 gi|118431509|ref|YP_874902.1| - 0.0006 19.5 1.9 0.00093 18.9 1.9 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|118431509|ref|YP_874902.1| - 0.0046 17.0 0.0 0.0055 16.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Lactamase_B PF00753.27 gi|118431510|ref|NP_148023.2| - 2.6e-13 50.4 0.6 7.5e-13 48.9 0.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|118431510|ref|NP_148023.2| - 2e-05 24.2 0.0 2.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|118431510|ref|NP_148023.2| - 0.00042 20.2 0.0 0.00067 19.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain zf-CDGSH PF09360.10 gi|14601485|ref|NP_148024.1| - 1.8e-13 50.5 2.0 3.1e-13 49.7 2.0 1.4 1 1 0 1 1 1 1 Iron-binding zinc finger CDGSH type DUF2201_N PF13203.6 gi|14601486|ref|NP_148025.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain PIN_5 PF08745.11 gi|118431512|ref|NP_148027.2| - 1.9e-62 210.4 1.3 2.3e-62 210.1 1.3 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Nucleolin_bd PF16725.5 gi|118431512|ref|NP_148027.2| - 0.06 13.0 0.2 0.14 11.8 0.2 1.7 1 0 0 1 1 1 0 Nucleolin binding domain Lig_C PF18330.1 gi|118431513|ref|NP_148028.2| - 2.6e-19 69.5 0.0 4.1e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|118431513|ref|NP_148028.2| - 1.1e-14 55.0 0.0 1.8e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|118431513|ref|NP_148028.2| - 0.079 12.6 0.0 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 ATP dependent DNA ligase domain UbiA PF01040.18 gi|14601492|ref|NP_148031.1| - 1.1e-37 129.7 23.9 1.4e-37 129.4 23.9 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.16 gi|118431515|ref|NP_148032.2| - 3.2e-129 431.4 0.0 3.6e-129 431.2 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PfaD_N PF18328.1 gi|14601494|ref|NP_148033.1| - 0.028 14.4 0.1 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 Fatty acid synthase subunit PfaD N-terminal domain DHQ_synthase PF01761.20 gi|118431517|ref|YP_874903.1| - 0.093 11.9 0.1 0.11 11.7 0.1 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase ABC_tran PF00005.27 gi|14601496|ref|NP_148035.1| - 9.4e-27 94.2 0.0 1.4e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|14601496|ref|NP_148035.1| - 2.1e-17 63.4 0.2 4e-17 62.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|14601496|ref|NP_148035.1| - 0.00019 21.4 1.8 0.041 13.7 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|14601496|ref|NP_148035.1| - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|14601496|ref|NP_148035.1| - 0.013 15.3 0.2 0.028 14.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|14601496|ref|NP_148035.1| - 0.013 15.8 0.3 0.024 15.0 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|14601496|ref|NP_148035.1| - 0.027 14.9 0.1 0.06 13.8 0.1 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|14601496|ref|NP_148035.1| - 0.034 14.4 2.1 0.17 12.2 2.1 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|14601496|ref|NP_148035.1| - 0.052 13.2 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SMC_N PF02463.19 gi|14601496|ref|NP_148035.1| - 0.053 12.9 0.0 1.2 8.5 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|14601496|ref|NP_148035.1| - 0.07 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|14601496|ref|NP_148035.1| - 0.095 12.5 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|14601496|ref|NP_148035.1| - 0.11 12.8 0.2 0.29 11.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|14601496|ref|NP_148035.1| - 0.17 11.8 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 gi|14601496|ref|NP_148035.1| - 0.19 11.8 0.1 0.31 11.1 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|14601497|ref|NP_148036.1| - 1.1e-29 103.7 0.0 1.5e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|14601497|ref|NP_148036.1| - 2.9e-20 72.6 0.5 4.6e-20 71.9 0.5 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|14601497|ref|NP_148036.1| - 1.1e-06 28.2 0.4 7.3e-06 25.6 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|14601497|ref|NP_148036.1| - 1e-05 25.5 1.0 0.00012 22.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|14601497|ref|NP_148036.1| - 0.0016 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|14601497|ref|NP_148036.1| - 0.0099 16.3 0.3 0.034 14.5 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|14601497|ref|NP_148036.1| - 0.021 15.1 1.2 2.8 8.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|14601497|ref|NP_148036.1| - 0.048 13.1 0.4 0.27 10.6 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|14601497|ref|NP_148036.1| - 0.17 12.1 0.1 0.3 11.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|14601497|ref|NP_148036.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|14601497|ref|NP_148036.1| - 0.23 11.0 0.7 0.5 9.9 0.1 1.8 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|118431518|ref|NP_148037.2| - 3.1e-22 79.2 18.0 1.3e-21 77.2 16.4 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|118431518|ref|NP_148037.2| - 0.3 11.1 0.0 0.3 11.1 0.0 3.7 3 1 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|14601499|ref|NP_148038.1| - 2e-39 135.3 17.1 2e-39 135.3 17.1 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component AAA_12 PF13087.6 gi|14601499|ref|NP_148038.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain CLASP_N PF12348.8 gi|14601499|ref|NP_148038.1| - 0.21 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 CLASP N terminal Spore_YhaL PF14147.6 gi|14601499|ref|NP_148038.1| - 1.5 8.5 5.8 20 5.0 0.1 2.8 2 0 0 2 2 2 0 Sporulation protein YhaL SBP_bac_5 PF00496.22 gi|118431519|ref|NP_148039.2| - 4.3e-17 62.1 0.4 1.4e-09 37.4 0.0 3.1 2 2 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|118431519|ref|NP_148039.2| - 0.033 14.1 5.5 0.055 13.4 5.5 1.2 1 0 0 1 1 1 0 Rifin Kelch_1 PF01344.25 gi|118431519|ref|NP_148039.2| - 0.037 13.6 0.1 0.34 10.5 0.0 2.6 3 0 0 3 3 3 0 Kelch motif Stevor PF17410.2 gi|118431519|ref|NP_148039.2| - 0.42 10.1 1.0 0.74 9.3 1.0 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF4366 PF14283.6 gi|118431519|ref|NP_148039.2| - 5.5 7.0 13.3 0.2 11.7 3.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4366) ComA PF02679.15 gi|14601501|ref|NP_148040.1| - 0.059 12.8 0.2 0.077 12.5 0.2 1.2 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) RHH_6 PF16762.5 gi|14601501|ref|NP_148040.1| - 0.066 13.8 0.4 0.13 12.9 0.4 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix domain TusA PF01206.17 gi|14601501|ref|NP_148040.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA PALP PF00291.25 gi|14601502|ref|NP_148041.1| - 1.9e-48 165.4 0.1 3.1e-48 164.7 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acyl-CoA_dh_1 PF00441.24 gi|118431520|ref|YP_874904.1| - 1.1e-07 32.1 0.0 1.3e-07 32.0 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|118431520|ref|YP_874904.1| - 0.0001 22.6 0.0 0.0001 22.6 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|118431521|ref|YP_874905.1| - 0.0034 17.6 0.6 0.0036 17.5 0.6 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PIN PF01850.21 gi|14601503|ref|NP_148042.1| - 2.3e-10 41.0 0.0 3.2e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|14601503|ref|NP_148042.1| - 0.0081 16.9 0.1 0.014 16.2 0.1 1.2 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|14601503|ref|NP_148042.1| - 0.018 15.5 0.0 0.023 15.2 0.0 1.2 1 0 0 1 1 1 0 PIN domain PPDK_N PF01326.19 gi|118431522|ref|YP_874906.1| - 1.4e-27 96.8 0.4 1.5e-27 96.7 0.4 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PPDK_N PF01326.19 gi|118431523|ref|YP_874907.1| - 2.6e-05 23.7 0.0 2.7e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Acylphosphatase PF00708.18 gi|118431524|ref|NP_148044.2| - 7.9e-25 87.1 0.0 9e-25 86.9 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase tRNA-synt_1e PF01406.19 gi|118431525|ref|NP_148045.2| - 4.7e-124 413.6 0.0 5.8e-124 413.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|118431525|ref|NP_148045.2| - 5.8e-16 58.2 0.5 1.8e-09 36.8 0.3 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|118431525|ref|NP_148045.2| - 6.4e-07 28.0 0.0 0.00076 17.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|118431525|ref|NP_148045.2| - 0.00092 18.2 0.1 0.019 13.8 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain DALR_2 PF09190.11 gi|118431525|ref|NP_148045.2| - 0.0051 17.3 0.0 0.024 15.1 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|118431525|ref|NP_148045.2| - 0.013 14.4 0.0 0.44 9.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) ThiF PF00899.21 gi|14601507|ref|NP_148046.1| - 4.9e-62 209.5 0.0 5.7e-62 209.2 0.0 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|14601507|ref|NP_148046.1| - 0.00062 19.8 0.1 0.002 18.2 0.1 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|14601507|ref|NP_148046.1| - 0.033 13.9 0.1 0.049 13.3 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|14601507|ref|NP_148046.1| - 0.042 13.2 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|14601507|ref|NP_148046.1| - 0.054 13.1 0.1 0.1 12.2 0.1 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.10 gi|14601507|ref|NP_148046.1| - 0.095 12.6 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 KR domain AdoMet_Synthase PF01941.19 gi|14601508|ref|NP_148047.1| - 6.3e-171 568.5 1.6 7.1e-171 568.4 1.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) MCPsignal PF00015.21 gi|14601508|ref|NP_148047.1| - 0.032 14.0 0.6 0.058 13.2 0.6 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF460 PF04312.13 gi|118431527|ref|NP_148048.2| - 4.5e-44 149.6 0.0 1.1e-43 148.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|118431527|ref|NP_148048.2| - 8.4e-07 29.3 4.2 3.9e-06 27.2 0.2 3.1 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor ATG16 PF08614.11 gi|118431527|ref|NP_148048.2| - 1.8e-05 25.1 9.3 4.5e-05 23.8 9.3 1.6 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) PRKG1_interact PF15898.5 gi|118431527|ref|NP_148048.2| - 0.00019 22.3 9.6 0.00068 20.5 9.6 2.0 1 0 0 1 1 1 1 cGMP-dependent protein kinase interacting domain Mur_ligase PF01225.25 gi|118431527|ref|NP_148048.2| - 0.00026 21.3 0.1 0.0008 19.7 0.1 1.8 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Tropomyosin_1 PF12718.7 gi|118431527|ref|NP_148048.2| - 0.00065 19.9 10.3 0.00065 19.9 10.3 2.0 2 0 0 2 2 2 1 Tropomyosin like OmpH PF03938.14 gi|118431527|ref|NP_148048.2| - 0.0019 18.5 1.8 0.0056 17.0 1.8 1.8 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Med9 PF07544.13 gi|118431527|ref|NP_148048.2| - 0.0019 18.2 5.0 0.002 18.2 3.3 1.9 2 0 0 2 2 1 1 RNA polymerase II transcription mediator complex subunit 9 FPP PF05911.11 gi|118431527|ref|NP_148048.2| - 0.0022 16.3 4.6 0.003 15.9 4.6 1.2 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil FlaC_arch PF05377.11 gi|118431527|ref|NP_148048.2| - 0.0029 18.0 10.9 0.35 11.3 0.8 3.5 3 0 0 3 3 3 2 Flagella accessory protein C (FlaC) HOOK PF05622.12 gi|118431527|ref|NP_148048.2| - 0.005 15.1 7.2 0.0068 14.6 7.2 1.1 1 0 0 1 1 1 1 HOOK protein Atg14 PF10186.9 gi|118431527|ref|NP_148048.2| - 0.005 16.0 2.8 0.0095 15.1 2.8 1.4 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 CCDC144C PF14915.6 gi|118431527|ref|NP_148048.2| - 0.0061 15.7 6.0 0.011 14.9 6.0 1.3 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region FapA PF03961.13 gi|118431527|ref|NP_148048.2| - 0.0072 15.0 1.9 0.011 14.4 1.9 1.2 1 0 0 1 1 1 1 Flagellar Assembly Protein A HMMR_N PF15905.5 gi|118431527|ref|NP_148048.2| - 0.0074 15.8 3.3 0.013 15.0 3.3 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF2353 PF09789.9 gi|118431527|ref|NP_148048.2| - 0.013 14.9 4.3 0.02 14.3 4.3 1.2 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Fib_alpha PF08702.10 gi|118431527|ref|NP_148048.2| - 0.013 15.7 0.7 0.033 14.4 0.7 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family EzrA PF06160.12 gi|118431527|ref|NP_148048.2| - 0.031 12.5 3.3 0.057 11.6 3.3 1.4 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA GAS PF13851.6 gi|118431527|ref|NP_148048.2| - 0.034 13.5 13.2 0.047 13.0 11.5 2.0 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|118431527|ref|NP_148048.2| - 0.034 13.0 7.6 0.067 12.1 7.6 1.5 1 0 0 1 1 1 0 Spc7 kinetochore protein Sec2p PF06428.11 gi|118431527|ref|NP_148048.2| - 0.038 14.0 10.4 0.17 11.9 2.1 2.6 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p AIP3 PF03915.13 gi|118431527|ref|NP_148048.2| - 0.045 12.8 2.0 0.065 12.3 2.0 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 Exonuc_VII_L PF02601.15 gi|118431527|ref|NP_148048.2| - 0.069 12.7 3.2 0.075 12.6 2.2 1.5 2 0 0 2 2 1 0 Exonuclease VII, large subunit Spc29 PF17082.5 gi|118431527|ref|NP_148048.2| - 0.07 13.0 9.6 0.68 9.7 1.8 2.3 1 1 1 2 2 2 0 Spindle Pole Component 29 Csm1_N PF18504.1 gi|118431527|ref|NP_148048.2| - 0.079 13.3 6.2 0.08 13.3 1.0 2.6 1 1 0 2 2 2 0 Csm1 N-terminal domain V_ATPase_I PF01496.19 gi|118431527|ref|NP_148048.2| - 0.15 10.0 4.2 0.21 9.5 4.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIC PF04977.15 gi|118431527|ref|NP_148048.2| - 0.15 11.8 8.7 0.074 12.8 4.8 2.4 1 1 1 2 2 2 0 Septum formation initiator UPF0242 PF06785.11 gi|118431527|ref|NP_148048.2| - 0.16 12.1 4.6 0.25 11.4 4.6 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ZapB PF06005.12 gi|118431527|ref|NP_148048.2| - 0.16 12.4 12.6 2.5 8.6 4.0 2.7 2 0 0 2 2 2 0 Cell division protein ZapB ADIP PF11559.8 gi|118431527|ref|NP_148048.2| - 0.17 12.0 7.1 0.81 9.8 0.5 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF3450 PF11932.8 gi|118431527|ref|NP_148048.2| - 0.2 10.9 9.6 0.22 10.8 1.7 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) KASH_CCD PF14662.6 gi|118431527|ref|NP_148048.2| - 0.29 10.9 12.6 0.78 9.5 12.5 1.7 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Fmp27_WPPW PF10359.9 gi|118431527|ref|NP_148048.2| - 0.37 9.6 3.7 0.54 9.0 3.7 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain NBP1 PF08537.10 gi|118431527|ref|NP_148048.2| - 0.4 10.0 4.8 0.64 9.4 4.8 1.2 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 DUF2703 PF10865.8 gi|118431527|ref|NP_148048.2| - 0.48 10.6 2.7 52 4.1 0.0 3.9 3 1 0 3 3 3 0 Domain of unknown function (DUF2703) USP8_interact PF08941.10 gi|118431527|ref|NP_148048.2| - 0.57 10.0 3.5 6.2 6.6 0.2 3.0 3 0 0 3 3 3 0 USP8 interacting DUF1664 PF07889.12 gi|118431527|ref|NP_148048.2| - 0.6 10.2 5.2 1.6 8.7 1.4 2.9 3 1 1 4 4 2 0 Protein of unknown function (DUF1664) BST2 PF16716.5 gi|118431527|ref|NP_148048.2| - 0.65 10.6 5.6 1.6 9.3 0.7 2.5 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 Leu_zip PF15294.6 gi|118431527|ref|NP_148048.2| - 0.65 9.5 7.7 13 5.2 7.3 2.4 1 1 1 2 2 2 0 Leucine zipper dCache_2 PF08269.11 gi|118431527|ref|NP_148048.2| - 0.71 9.0 2.5 1.1 8.3 2.5 1.2 1 0 0 1 1 1 0 Cache domain CENP-F_leu_zip PF10473.9 gi|118431527|ref|NP_148048.2| - 0.71 9.9 21.1 0.7 9.9 5.2 2.8 1 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PspA_IM30 PF04012.12 gi|118431527|ref|NP_148048.2| - 1.1 8.8 20.3 0.1 12.1 8.4 2.9 2 1 1 3 3 2 0 PspA/IM30 family MAD PF05557.13 gi|118431527|ref|NP_148048.2| - 1.1 7.5 15.6 41 2.3 15.3 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein BRE1 PF08647.11 gi|118431527|ref|NP_148048.2| - 1.1 9.3 11.0 0.72 10.0 8.8 1.8 2 0 0 2 2 1 0 BRE1 E3 ubiquitin ligase DivIVA PF05103.13 gi|118431527|ref|NP_148048.2| - 1.3 9.1 6.6 3 7.9 6.6 1.5 1 0 0 1 1 1 0 DivIVA protein DUF641 PF04859.12 gi|118431527|ref|NP_148048.2| - 1.8 8.9 15.5 0.29 11.5 2.7 3.2 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) TolA_bind_tri PF16331.5 gi|118431527|ref|NP_148048.2| - 1.9 8.7 12.0 6.8 6.8 2.0 3.0 2 1 0 2 2 2 0 TolA binding protein trimerisation End3 PF12761.7 gi|118431527|ref|NP_148048.2| - 2.4 8.3 8.1 4.3 7.5 7.6 1.7 2 1 0 2 2 1 0 Actin cytoskeleton-regulatory complex protein END3 Occludin_ELL PF07303.13 gi|118431527|ref|NP_148048.2| - 2.7 8.8 7.7 26 5.6 3.8 3.0 3 0 0 3 3 2 0 Occludin homology domain HIP1_clath_bdg PF16515.5 gi|118431527|ref|NP_148048.2| - 2.9 8.6 12.3 10 6.8 11.8 2.2 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF2730 PF10805.8 gi|118431527|ref|NP_148048.2| - 4.7 7.4 9.8 18 5.5 1.7 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF2730) TPR_MLP1_2 PF07926.12 gi|118431527|ref|NP_148048.2| - 4.9 7.2 12.3 4.9 7.2 8.5 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Uso1_p115_C PF04871.13 gi|118431527|ref|NP_148048.2| - 5.3 7.4 11.4 2.3 8.6 8.2 2.0 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region PV-1 PF06637.11 gi|118431527|ref|NP_148048.2| - 5.6 5.7 9.9 9.7 4.9 9.1 1.7 2 0 0 2 2 2 0 PV-1 protein (PLVAP) Serine_rich PF08824.10 gi|118431527|ref|NP_148048.2| - 6 6.9 7.1 17 5.4 0.7 3.2 3 0 0 3 3 3 0 Serine rich protein interaction domain DUF4201 PF13870.6 gi|118431527|ref|NP_148048.2| - 6.8 6.4 13.4 11 5.7 12.2 1.9 2 1 0 2 2 1 0 Domain of unknown function (DUF4201) SOGA PF11365.8 gi|118431527|ref|NP_148048.2| - 7.1 7.8 15.3 9.9 7.4 13.4 2.2 2 1 0 2 2 1 0 Protein SOGA Laminin_II PF06009.12 gi|118431527|ref|NP_148048.2| - 8.1 6.5 9.4 6.8 6.7 3.6 2.9 3 1 0 3 3 2 0 Laminin Domain II DUF812 PF05667.11 gi|118431527|ref|NP_148048.2| - 8.3 5.2 12.9 6.9 5.4 11.1 1.5 1 1 0 2 2 2 0 Protein of unknown function (DUF812) YabA PF06156.13 gi|118431527|ref|NP_148048.2| - 8.3 7.1 8.9 1e+02 3.6 1.0 2.4 1 1 1 2 2 2 0 Initiation control protein YabA HALZ PF02183.18 gi|118431527|ref|NP_148048.2| - 9 6.6 6.3 2.4 8.4 1.4 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper UPF0449 PF15136.6 gi|118431527|ref|NP_148048.2| - 10 6.7 7.0 7.9 7.0 0.8 2.9 2 1 1 3 3 2 0 Uncharacterised protein family UPF0449 RIO1 PF01163.22 gi|118431528|ref|NP_148049.2| - 1.2e-53 181.5 0.0 1.5e-53 181.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|118431528|ref|NP_148049.2| - 4.2e-22 78.1 0.1 3.2e-21 75.3 0.1 2.2 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|118431528|ref|NP_148049.2| - 1.8e-07 31.4 1.2 0.00073 19.5 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|118431528|ref|NP_148049.2| - 0.00089 18.1 0.0 0.0013 17.6 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|118431528|ref|NP_148049.2| - 0.0044 16.4 0.0 0.049 13.0 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family MarR_2 PF12802.7 gi|118431528|ref|NP_148049.2| - 0.0087 15.9 0.2 0.034 14.0 0.2 2.1 1 0 0 1 1 1 1 MarR family Pkinase PF00069.25 gi|118431528|ref|NP_148049.2| - 0.013 14.9 0.0 0.051 12.9 0.0 1.8 1 1 0 1 1 1 0 Protein kinase domain Fructosamin_kin PF03881.14 gi|118431528|ref|NP_148049.2| - 0.032 13.4 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 Fructosamine kinase HTH_5 PF01022.20 gi|118431529|ref|YP_874909.1| - 5.5e-11 42.2 0.1 8.1e-11 41.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|118431529|ref|YP_874909.1| - 5.1e-10 39.3 0.0 6.8e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|118431529|ref|YP_874909.1| - 1.4e-06 27.7 0.7 2.3e-06 27.0 0.7 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|118431529|ref|YP_874909.1| - 2.7e-05 24.0 0.0 3.6e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|118431529|ref|YP_874909.1| - 5.5e-05 23.0 0.0 8.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|118431529|ref|YP_874909.1| - 6e-05 22.9 0.1 7.5e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|118431529|ref|YP_874909.1| - 0.00053 20.4 0.0 0.00067 20.1 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|118431529|ref|YP_874909.1| - 0.0011 19.1 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|118431529|ref|YP_874909.1| - 0.0031 17.4 0.2 0.006 16.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain DprA_WH PF17782.1 gi|118431529|ref|YP_874909.1| - 0.0054 16.8 0.1 0.008 16.3 0.1 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_IclR PF09339.10 gi|118431529|ref|YP_874909.1| - 0.0076 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|118431529|ref|YP_874909.1| - 0.0081 16.3 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|118431529|ref|YP_874909.1| - 0.01 15.8 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|118431529|ref|YP_874909.1| - 0.012 15.8 0.1 0.021 14.9 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain PAX PF00292.18 gi|118431529|ref|YP_874909.1| - 0.035 14.0 0.1 0.041 13.8 0.1 1.1 1 0 0 1 1 1 0 'Paired box' domain HTH_36 PF13730.6 gi|118431529|ref|YP_874909.1| - 0.047 13.7 0.1 0.076 13.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Nuc_N PF14448.6 gi|118431529|ref|YP_874909.1| - 0.079 12.8 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Nuclease N terminal CTP_synth_N PF06418.14 gi|14601511|ref|NP_148051.1| - 2.6e-119 397.4 0.1 3.8e-119 396.9 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|14601511|ref|NP_148051.1| - 2.7e-47 161.0 0.0 4.2e-47 160.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|14601511|ref|NP_148051.1| - 5.5e-12 45.9 0.0 1.1e-11 44.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|14601511|ref|NP_148051.1| - 0.00025 21.1 0.0 0.00042 20.4 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hydrolase_6 PF13344.6 gi|118431530|ref|NP_148052.2| - 1.9e-22 79.3 0.0 2.5e-21 75.7 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|118431530|ref|NP_148052.2| - 2.4e-11 43.5 0.0 5.3e-11 42.4 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|118431530|ref|NP_148052.2| - 0.0053 17.1 0.2 0.0087 16.4 0.2 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase FbpA PF05833.11 gi|14601515|ref|NP_148055.1| - 5.6e-34 117.7 0.0 7.6e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|14601515|ref|NP_148055.1| - 1.1e-21 77.5 0.0 7.2e-21 74.9 0.0 2.1 2 0 0 2 2 2 1 NFACT protein RNA binding domain DUF724 PF05266.14 gi|14601515|ref|NP_148055.1| - 0.1 12.4 0.3 0.16 11.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF773 PF05600.12 gi|14601515|ref|NP_148055.1| - 0.16 10.6 3.1 0.096 11.4 0.5 1.7 2 0 0 2 2 2 0 CDK5 regulatory subunit-associated protein 3 HAUS6_N PF14661.6 gi|14601515|ref|NP_148055.1| - 4.5 6.8 4.8 8.6 5.9 4.8 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus kleA_kleC PF17383.2 gi|14601515|ref|NP_148055.1| - 8.3 6.8 11.5 1.3 9.4 1.2 2.8 2 0 0 2 2 2 0 Uncharacterized KorC regulated protein A FeS_assembly_P PF01883.19 gi|14601516|ref|NP_148056.1| - 0.09 13.0 0.3 0.78 10.0 0.3 2.1 1 1 0 1 1 1 0 Iron-sulfur cluster assembly protein Cation_efflux PF01545.21 gi|14601517|ref|NP_148057.1| - 8.9e-15 54.9 20.6 1.1e-14 54.6 20.6 1.1 1 0 0 1 1 1 1 Cation efflux family PhosphMutase PF10143.9 gi|118431534|ref|NP_148058.2| - 5.4e-51 172.8 0.0 8.4e-51 172.2 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|118431534|ref|NP_148058.2| - 1.4e-27 96.6 0.0 1.8e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|118431534|ref|NP_148058.2| - 0.02 14.5 0.0 0.04 13.5 0.0 1.4 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Aconitase PF00330.20 gi|118431535|ref|NP_148060.2| - 1.4e-177 591.3 0.0 1.9e-177 590.9 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|118431535|ref|NP_148060.2| - 9.3e-39 132.8 0.0 1.5e-38 132.1 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain NTS_2 PF15448.6 gi|118431535|ref|NP_148060.2| - 0.027 14.9 0.0 0.31 11.5 0.0 2.6 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein Lycopene_cycl PF05834.12 gi|118431536|ref|NP_148061.2| - 3.5e-07 29.6 0.2 0.00021 20.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|118431536|ref|NP_148061.2| - 4.5e-07 30.0 1.0 1.1e-05 25.5 0.2 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|118431536|ref|NP_148061.2| - 1.2e-06 27.9 0.1 3.1e-06 26.6 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|118431536|ref|NP_148061.2| - 1.7e-05 24.6 1.6 0.042 13.4 0.3 3.0 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|118431536|ref|NP_148061.2| - 7.3e-05 22.2 4.6 0.038 13.2 1.3 2.8 2 1 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|118431536|ref|NP_148061.2| - 0.00044 20.8 0.2 0.0022 18.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|118431536|ref|NP_148061.2| - 0.00067 18.5 0.3 0.0018 17.0 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|118431536|ref|NP_148061.2| - 0.0056 15.8 0.1 0.0092 15.1 0.1 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|118431536|ref|NP_148061.2| - 0.0059 15.9 0.1 0.22 10.8 0.1 2.4 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|118431536|ref|NP_148061.2| - 0.0066 15.6 1.7 0.013 14.6 0.2 2.2 2 1 1 3 3 3 1 FAD binding domain NAD_binding_9 PF13454.6 gi|118431536|ref|NP_148061.2| - 0.054 13.5 1.6 0.99 9.4 0.1 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding COX1 PF00115.20 gi|14601522|ref|NP_148062.1| - 2.7e-89 300.0 59.9 2.7e-89 300.0 59.9 1.8 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF5518 PF17647.1 gi|14601523|ref|NP_148063.1| - 0.0015 18.6 17.6 0.023 14.8 17.6 2.0 1 1 0 1 1 1 1 Family of unknown function (DUF5518) DUF4064 PF13273.6 gi|14601523|ref|NP_148063.1| - 0.94 9.8 13.3 11 6.4 13.3 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF308 PF03729.13 gi|14601523|ref|NP_148063.1| - 5 7.5 21.9 14 6.1 3.4 3.0 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DUF1122 PF06557.11 gi|14601524|ref|NP_148064.1| - 1.6e-70 236.1 0.0 2e-70 235.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) SUI1 PF01253.22 gi|14601525|ref|NP_148065.1| - 1.6e-20 73.4 0.3 1.9e-20 73.2 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|14601525|ref|NP_148065.1| - 0.00065 19.9 0.4 0.00094 19.4 0.4 1.3 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) zf_UBZ PF18439.1 gi|118431537|ref|NP_148066.2| - 0.0038 16.8 1.4 1.4 8.6 0.2 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger DNA_RNApol_7kD PF03604.13 gi|118431537|ref|NP_148066.2| - 0.0052 16.4 3.7 0.073 12.8 3.7 2.1 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF3268 PF11672.8 gi|118431537|ref|NP_148066.2| - 0.017 15.4 0.6 0.27 11.6 0.4 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain A2L_zn_ribbon PF08792.10 gi|118431537|ref|NP_148066.2| - 0.019 14.7 1.2 1.9 8.3 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|118431537|ref|NP_148066.2| - 0.027 14.4 4.2 0.042 13.8 1.9 2.3 2 1 1 3 3 3 0 zinc-ribbon domain zf-CSL PF05207.13 gi|118431537|ref|NP_148066.2| - 0.03 14.0 3.1 0.14 11.9 3.1 1.9 1 1 0 1 1 1 0 CSL zinc finger zf-UBR PF02207.20 gi|118431537|ref|NP_148066.2| - 0.063 13.5 0.3 0.093 12.9 0.3 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) TFIIS_C PF01096.18 gi|118431537|ref|NP_148066.2| - 0.065 13.1 0.7 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_SprT PF17283.2 gi|118431537|ref|NP_148066.2| - 0.12 12.3 4.7 0.42 10.6 4.7 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF2197 PF09963.9 gi|118431537|ref|NP_148066.2| - 0.12 12.6 1.9 0.5 10.7 0.2 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) DUF4428 PF14471.6 gi|118431537|ref|NP_148066.2| - 0.13 12.2 0.8 0.48 10.4 0.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zf-CCHC_2 PF13696.6 gi|118431537|ref|NP_148066.2| - 0.34 10.8 5.5 2.2 8.2 0.3 2.2 2 0 0 2 2 2 0 Zinc knuckle Rubredoxin_2 PF18073.1 gi|118431537|ref|NP_148066.2| - 0.44 10.3 6.5 4.3 7.2 0.7 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-RRN7 PF11781.8 gi|118431537|ref|NP_148066.2| - 0.95 9.2 8.9 3.6 7.4 2.0 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SBP_bac_1 PF01547.25 gi|118431538|ref|NP_148067.2| - 1.6e-39 136.8 2.4 2.2e-39 136.3 2.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|118431538|ref|NP_148067.2| - 2.4e-35 122.7 0.0 3.7e-35 122.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|118431538|ref|NP_148067.2| - 1.2e-06 28.2 0.1 2e-05 24.1 0.1 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|118431538|ref|NP_148067.2| - 2.8e-06 27.2 0.0 3.1e-05 23.9 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|14601528|ref|NP_148068.1| - 0.0021 17.8 29.4 0.037 13.8 29.4 2.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|14601529|ref|NP_148069.1| - 4.5e-14 52.6 22.7 4.5e-14 52.6 22.7 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|118431539|ref|NP_148070.2| - 4.4e-33 114.7 0.0 8.4e-33 113.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|118431539|ref|NP_148070.2| - 6.3e-11 42.3 0.6 1.5e-10 41.1 0.1 1.9 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.17 gi|118431539|ref|NP_148070.2| - 4.3e-07 30.1 0.0 1.6e-06 28.3 0.0 2.0 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|118431539|ref|NP_148070.2| - 8.1e-06 25.9 0.1 0.11 12.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|118431539|ref|NP_148070.2| - 1.3e-05 25.9 3.9 4.7e-05 24.1 1.1 3.3 3 1 0 3 3 3 1 MalK OB fold domain CysA_C_terminal PF17850.1 gi|118431539|ref|NP_148070.2| - 3e-05 24.5 2.9 5.1e-05 23.7 1.2 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|118431539|ref|NP_148070.2| - 0.0012 19.2 0.0 0.02 15.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|118431539|ref|NP_148070.2| - 0.0026 18.2 0.1 0.004 17.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|118431539|ref|NP_148070.2| - 0.0032 17.4 0.0 0.0056 16.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|118431539|ref|NP_148070.2| - 0.021 15.1 0.5 0.063 13.5 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|118431539|ref|NP_148070.2| - 0.026 14.8 0.0 0.065 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|118431539|ref|NP_148070.2| - 0.032 13.9 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|118431539|ref|NP_148070.2| - 0.098 12.6 0.3 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_5 PF07728.14 gi|118431539|ref|NP_148070.2| - 0.17 11.8 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|118431539|ref|NP_148070.2| - 0.19 11.7 0.0 0.68 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|118431539|ref|NP_148070.2| - 0.2 11.4 0.1 0.47 10.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arginase PF00491.21 gi|118431540|ref|NP_148071.2| - 5.4e-75 252.5 0.0 6.6e-75 252.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family HGTP_anticodon PF03129.20 gi|14601532|ref|NP_148072.1| - 2.2e-25 88.6 0.1 4.7e-25 87.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|14601532|ref|NP_148072.1| - 0.00034 20.6 0.0 0.00077 19.5 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Rad50_zn_hook PF04423.14 gi|14601532|ref|NP_148072.1| - 0.077 12.8 1.1 0.46 10.4 0.1 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2HC_2 PF13913.6 gi|14601532|ref|NP_148072.1| - 0.18 11.7 0.1 0.18 11.7 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn_ribbon_SprT PF17283.2 gi|14601532|ref|NP_148072.1| - 0.46 10.4 2.0 12 5.9 0.0 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|14601532|ref|NP_148072.1| - 0.47 10.6 2.0 5 7.3 2.0 2.4 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|14601532|ref|NP_148072.1| - 4.6 7.2 5.0 5.8 6.9 0.8 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Molydop_binding PF01568.21 gi|118431541|ref|YP_874911.1| - 3.6e-06 27.0 0.0 0.012 15.7 0.0 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|118431541|ref|YP_874911.1| - 0.16 12.2 0.0 4.6 7.5 0.0 2.2 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain tRNA_int_endo PF01974.17 gi|118431543|ref|NP_148074.2| - 6e-28 96.7 0.1 8.8e-28 96.2 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|118431543|ref|NP_148074.2| - 2.9e-20 71.7 0.1 4.1e-20 71.2 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Rrp40_N PF18311.1 gi|118431543|ref|NP_148074.2| - 0.035 14.1 0.0 0.082 12.9 0.0 1.6 1 0 0 1 1 1 0 Exosome complex exonuclease Rrp40 N-terminal domain Flavoprotein PF02441.19 gi|14601535|ref|NP_148075.1| - 3.3e-18 65.9 0.0 4.1e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Macro PF01661.21 gi|118431544|ref|NP_148076.2| - 8.9e-27 93.5 0.0 1.2e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 Macro domain TetR_N PF00440.23 gi|118431544|ref|NP_148076.2| - 0.032 14.0 1.7 4.2 7.3 0.4 2.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, tetR family CLP1_P PF16575.5 gi|118431545|ref|NP_148077.2| - 8.6e-29 100.7 0.0 1.2e-28 100.2 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop PduV-EutP PF10662.9 gi|118431545|ref|NP_148077.2| - 0.18 11.5 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Radical_SAM PF04055.21 gi|14601538|ref|NP_148078.1| - 2.5e-25 89.8 0.0 5.8e-25 88.6 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|14601538|ref|NP_148078.1| - 9.4e-06 26.1 0.0 2.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|14601538|ref|NP_148078.1| - 1e-05 25.8 0.0 1.8e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|14601538|ref|NP_148078.1| - 0.0018 18.4 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|14601538|ref|NP_148078.1| - 0.021 14.3 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF4224 PF13986.6 gi|14601538|ref|NP_148078.1| - 0.099 12.5 0.0 0.32 10.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Radical_SAM PF04055.21 gi|14601539|ref|NP_148079.1| - 1.5e-19 71.0 0.0 2.8e-19 70.1 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|14601539|ref|NP_148079.1| - 2.5e-05 24.6 0.0 4.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|14601539|ref|NP_148079.1| - 0.00015 22.2 0.0 0.00029 21.3 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|14601539|ref|NP_148079.1| - 0.00059 20.0 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Aldolase_II PF00596.21 gi|118431546|ref|NP_148080.2| - 1.7e-38 132.4 0.2 1.9e-38 132.3 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Aldo_ket_red PF00248.21 gi|14601541|ref|NP_148081.1| - 1.6e-53 181.8 0.0 1.8e-53 181.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Abhydrolase_8 PF06259.12 gi|14601541|ref|NP_148081.1| - 0.013 15.1 0.2 0.022 14.4 0.2 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase CoA_binding_2 PF13380.6 gi|118431547|ref|NP_148082.2| - 1.9e-35 121.9 0.4 2.1e-35 121.7 0.4 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|118431547|ref|NP_148082.2| - 2.6e-08 34.4 0.0 1.3e-07 32.2 0.0 1.8 1 1 1 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|118431547|ref|NP_148082.2| - 0.04 14.7 0.2 1.2 10.0 0.2 2.3 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold YjeF_N PF03853.15 gi|118431547|ref|NP_148082.2| - 0.15 12.0 0.0 1.7 8.5 0.0 2.0 2 0 0 2 2 2 0 YjeF-related protein N-terminus PTH2 PF01981.16 gi|14601543|ref|NP_148083.1| - 3.3e-39 133.8 0.0 3.7e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 BTHB PF18410.1 gi|14601543|ref|NP_148083.1| - 0.041 13.7 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Basic tilted helix bundle domain HTH_ParB PF17762.1 gi|14601543|ref|NP_148083.1| - 0.046 13.5 1.5 0.062 13.1 0.1 1.7 2 0 0 2 2 2 0 HTH domain found in ParB protein DUF2396 PF09654.10 gi|14601543|ref|NP_148083.1| - 0.12 12.4 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) PyrI PF01948.18 gi|118431548|ref|NP_148084.2| - 6.1e-28 96.9 0.0 8.2e-28 96.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|118431548|ref|NP_148084.2| - 1.3e-13 50.6 0.1 2.1e-13 49.9 0.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|118431549|ref|NP_148085.2| - 3.2e-42 144.1 0.0 4.4e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|118431549|ref|NP_148085.2| - 1.3e-21 77.3 0.0 1.8e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HD PF01966.22 gi|14601546|ref|NP_148086.1| - 8.9e-09 35.6 0.0 2.2e-08 34.4 0.0 1.7 1 1 1 2 2 2 1 HD domain CutA1 PF03091.15 gi|14601547|ref|NP_148087.1| - 8.3e-34 115.4 0.0 9.4e-34 115.2 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Pyr_redox_2 PF07992.14 gi|118431550|ref|NP_148088.2| - 1.8e-62 211.2 3.8 2.4e-62 210.8 3.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|118431550|ref|NP_148088.2| - 3.1e-33 114.3 0.3 7.5e-33 113.1 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|118431550|ref|NP_148088.2| - 4.3e-22 78.5 7.9 3.7e-21 75.5 0.8 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|118431550|ref|NP_148088.2| - 9.6e-17 61.2 0.4 3.7e-12 46.1 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|118431550|ref|NP_148088.2| - 1.9e-10 40.4 1.2 7.2e-06 25.3 0.6 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|118431550|ref|NP_148088.2| - 1.5e-09 37.8 9.7 7.4e-09 35.5 0.8 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|118431550|ref|NP_148088.2| - 3e-08 33.8 1.4 0.0014 18.8 0.3 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|118431550|ref|NP_148088.2| - 9.7e-07 27.8 9.2 0.0032 16.2 0.4 3.3 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|118431550|ref|NP_148088.2| - 5.9e-06 25.6 7.6 1.2e-05 24.6 0.3 2.8 3 0 0 3 3 3 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|118431550|ref|NP_148088.2| - 6.3e-06 25.9 2.1 9.3e-05 22.1 0.1 2.6 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|118431550|ref|NP_148088.2| - 9.5e-06 25.4 14.4 0.057 13.0 0.8 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|118431550|ref|NP_148088.2| - 0.00015 21.1 2.1 0.0074 15.6 0.2 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|118431550|ref|NP_148088.2| - 0.00052 19.9 2.4 0.0099 15.8 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|118431550|ref|NP_148088.2| - 0.002 17.5 5.8 0.092 12.0 0.6 2.6 2 1 1 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|118431550|ref|NP_148088.2| - 0.0038 17.7 1.3 0.37 11.2 0.2 2.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|118431550|ref|NP_148088.2| - 0.0063 15.6 9.5 0.17 10.9 0.2 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein Thi4 PF01946.17 gi|118431550|ref|NP_148088.2| - 0.0081 15.4 3.5 0.026 13.8 0.0 2.8 3 0 0 3 3 3 1 Thi4 family Trp_halogenase PF04820.14 gi|118431550|ref|NP_148088.2| - 0.025 13.5 2.4 0.45 9.3 0.1 2.3 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|118431550|ref|NP_148088.2| - 0.14 11.5 0.1 0.27 10.6 0.1 1.4 1 0 0 1 1 1 0 ThiF family NAD_binding_9 PF13454.6 gi|118431550|ref|NP_148088.2| - 0.26 11.3 8.6 2.1 8.3 0.3 3.8 3 1 1 4 4 4 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.23 gi|14601549|ref|NP_148089.1| - 5.3e-85 284.6 0.0 6.5e-85 284.3 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|14601549|ref|NP_148089.1| - 2.6e-19 68.8 0.6 4.7e-19 68.0 0.6 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|14601549|ref|NP_148089.1| - 1.2e-13 51.2 5.8 2.1e-13 50.4 2.3 3.2 4 0 0 4 4 4 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|14601549|ref|NP_148089.1| - 4.4e-08 32.8 0.4 0.0001 22.1 0.0 2.5 2 0 0 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|14601549|ref|NP_148089.1| - 0.00028 21.6 1.1 0.021 15.5 0.1 2.6 1 1 1 2 2 2 1 HlyD family secretion protein DUF2868 PF11067.8 gi|14601549|ref|NP_148089.1| - 0.18 11.3 2.5 0.25 10.8 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) Transket_pyr PF02779.24 gi|14601550|ref|NP_148090.1| - 1.1e-50 171.7 0.0 1.7e-50 171.1 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|14601550|ref|NP_148090.1| - 1.7e-39 134.5 0.0 4.8e-39 133.1 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|14601550|ref|NP_148090.1| - 0.0051 17.1 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|118431551|ref|NP_148091.2| - 9e-82 274.4 0.0 1.1e-81 274.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|118431551|ref|NP_148091.2| - 0.0046 16.2 0.0 0.015 14.5 0.0 1.7 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|118431551|ref|NP_148091.2| - 0.024 14.4 0.8 0.48 10.2 0.5 2.6 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Acyl-CoA_dh_1 PF00441.24 gi|118431552|ref|NP_148093.2| - 4.2e-45 153.6 0.7 6.1e-45 153.1 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|118431552|ref|NP_148093.2| - 4.6e-33 114.3 0.1 1.3e-32 112.8 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|118431552|ref|NP_148093.2| - 8.5e-24 83.6 0.0 1.5e-23 82.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|118431552|ref|NP_148093.2| - 4.5e-16 59.3 0.3 9.5e-16 58.3 0.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|118431552|ref|NP_148093.2| - 0.12 12.0 0.0 1.2 8.8 0.0 2.2 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal MeaB PF03308.16 gi|118431553|ref|NP_148094.2| - 3.8e-117 390.0 2.0 4.6e-117 389.8 2.0 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|118431553|ref|NP_148094.2| - 1.8e-07 30.9 0.4 7.8e-07 28.8 0.4 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|118431553|ref|NP_148094.2| - 2.3e-05 24.3 0.2 7.5e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|118431553|ref|NP_148094.2| - 4e-05 23.7 0.0 0.00014 21.9 0.0 1.9 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.17 gi|118431553|ref|NP_148094.2| - 0.00011 22.1 0.0 0.00025 20.9 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|118431553|ref|NP_148094.2| - 0.00023 20.9 0.2 0.0013 18.4 0.2 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|118431553|ref|NP_148094.2| - 0.00034 20.6 0.1 0.00076 19.4 0.1 1.5 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|118431553|ref|NP_148094.2| - 0.00061 19.6 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain Glyco_trans_4_4 PF13579.6 gi|118431553|ref|NP_148094.2| - 0.0029 18.1 0.2 0.012 16.1 0.2 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain MMR_HSR1 PF01926.23 gi|118431553|ref|NP_148094.2| - 0.0051 16.9 0.0 0.016 15.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|118431553|ref|NP_148094.2| - 0.006 17.0 0.7 0.017 15.5 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain MipZ PF09140.11 gi|118431553|ref|NP_148094.2| - 0.011 15.1 0.1 0.02 14.2 0.1 1.5 1 1 0 1 1 1 0 ATPase MipZ AAA_22 PF13401.6 gi|118431553|ref|NP_148094.2| - 0.013 15.8 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|118431553|ref|NP_148094.2| - 0.014 14.9 0.0 0.83 9.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain APS_kinase PF01583.20 gi|118431553|ref|NP_148094.2| - 0.021 14.7 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|118431553|ref|NP_148094.2| - 0.03 13.5 0.0 0.055 12.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|118431553|ref|NP_148094.2| - 0.04 14.1 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|118431553|ref|NP_148094.2| - 0.041 13.2 0.0 0.075 12.4 0.0 1.4 1 0 0 1 1 1 0 KaiC Ploopntkinase3 PF18751.1 gi|118431553|ref|NP_148094.2| - 0.045 13.7 0.4 0.39 10.6 0.0 2.6 2 1 1 3 3 3 0 P-loop Nucleotide Kinase3 ABC_tran PF00005.27 gi|118431553|ref|NP_148094.2| - 0.045 14.3 0.0 0.082 13.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|118431553|ref|NP_148094.2| - 0.084 12.8 0.0 0.5 10.3 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase TrwB_AAD_bind PF10412.9 gi|118431553|ref|NP_148094.2| - 0.1 11.5 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Glyco_trans_4_2 PF13477.6 gi|118431553|ref|NP_148094.2| - 0.14 12.2 0.0 0.33 11.0 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like AAA_18 PF13238.6 gi|118431553|ref|NP_148094.2| - 0.16 12.6 1.4 0.23 12.0 0.1 2.0 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|118431553|ref|NP_148094.2| - 0.19 12.0 0.9 2.3 8.4 0.1 2.4 2 0 0 2 2 2 0 AAA domain B12-binding PF02310.19 gi|118431554|ref|NP_148095.2| - 7.3e-22 77.7 0.1 8.5e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 B12 binding domain LytR_C PF13399.6 gi|118431554|ref|NP_148095.2| - 0.12 13.3 0.1 0.98 10.4 0.1 2.2 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator MM_CoA_mutase PF01642.22 gi|14601556|ref|NP_148096.1| - 1.5e-220 733.1 0.0 1.7e-220 733.0 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Peripla_BP_2 PF01497.18 gi|118431555|ref|NP_148097.2| - 8.1e-21 74.7 0.0 1.1e-20 74.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF309 PF03745.14 gi|118431556|ref|NP_148099.2| - 6e-08 32.3 1.1 9.3e-08 31.6 0.5 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF309) Zip PF02535.22 gi|14601560|ref|NP_148100.1| - 3.8e-15 56.0 30.0 1.3e-13 50.9 14.9 2.3 1 1 0 2 2 2 2 ZIP Zinc transporter Pyrophosphatase PF00719.19 gi|118431557|ref|NP_148101.2| - 1.9e-54 183.8 0.0 2.1e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase InPase PF18823.1 gi|118431557|ref|NP_148101.2| - 0.19 11.4 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Inorganic Pyrophosphatase COX15-CtaA PF02628.15 gi|118431559|ref|NP_148103.2| - 3e-17 62.7 16.5 1e-09 37.9 0.5 2.0 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein Cyt_bd_oxida_II PF02322.15 gi|118431559|ref|NP_148103.2| - 0.0038 16.6 10.9 0.0053 16.2 10.9 1.2 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Pox_P21 PF05313.12 gi|118431559|ref|NP_148103.2| - 0.047 13.3 0.5 0.058 13.0 0.5 1.2 1 0 0 1 1 1 0 Poxvirus P21 membrane protein SirB PF04247.12 gi|118431559|ref|NP_148103.2| - 0.22 11.6 10.1 0.026 14.6 5.4 1.8 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB ALMT PF11744.8 gi|118431559|ref|NP_148103.2| - 0.43 9.4 5.3 0.53 9.0 5.3 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter MerC PF03203.14 gi|118431559|ref|NP_148103.2| - 1.1 9.7 14.0 0.27 11.7 7.8 2.2 1 1 1 2 2 2 0 MerC mercury resistance protein GCV_T PF01571.21 gi|118431560|ref|NP_148104.2| - 7.1e-69 232.0 0.0 9.1e-69 231.7 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|118431560|ref|NP_148104.2| - 3.2e-17 62.2 0.1 7.2e-17 61.1 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain RNA_Me_trans PF04252.13 gi|118431560|ref|NP_148104.2| - 0.041 13.4 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase tRNA_U5-meth_tr PF05958.11 gi|118431560|ref|NP_148104.2| - 0.26 10.2 0.0 0.37 9.7 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF4192 PF13830.6 gi|14601565|ref|NP_148105.1| - 0.0054 16.8 0.1 0.0082 16.2 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4192) PTPS PF01242.19 gi|14601565|ref|NP_148105.1| - 0.23 11.4 0.0 0.65 10.0 0.0 1.8 1 1 0 1 1 1 0 6-pyruvoyl tetrahydropterin synthase DUF2299 PF10061.9 gi|14601567|ref|NP_148107.1| - 1.6e-34 118.6 0.0 1.8e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF3352 PF11832.8 gi|14601567|ref|NP_148107.1| - 0.03 13.0 0.1 0.045 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3352) ABC_tran PF00005.27 gi|14601569|ref|NP_148109.1| - 1.1e-22 81.0 0.0 1.5e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14601569|ref|NP_148109.1| - 4.1e-10 40.0 0.1 4.3e-06 26.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|14601569|ref|NP_148109.1| - 3.1e-07 30.1 0.0 0.015 14.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|14601569|ref|NP_148109.1| - 0.0088 14.7 0.0 0.48 9.0 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|14601569|ref|NP_148109.1| - 0.012 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1979 PF09322.10 gi|14601569|ref|NP_148109.1| - 0.054 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) AAA_33 PF13671.6 gi|14601569|ref|NP_148109.1| - 0.14 12.4 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|14601569|ref|NP_148109.1| - 0.17 11.4 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|14601569|ref|NP_148109.1| - 0.17 11.7 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase UPF0051 PF01458.17 gi|14601570|ref|NP_148110.1| - 9.6e-65 218.3 0.1 1.3e-64 217.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|14601571|ref|NP_148111.1| - 1.2e-34 119.9 0.0 1.5e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) BD_b_sandwich PF18820.1 gi|14601571|ref|NP_148111.1| - 0.1 12.6 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Bdellovibrio Beta-sandwich EzrA PF06160.12 gi|14601572|ref|NP_148112.1| - 1.1e-08 33.8 53.1 2.5e-07 29.3 19.7 5.0 2 1 2 4 4 4 3 Septation ring formation regulator, EzrA DUF1771 PF08590.10 gi|14601572|ref|NP_148112.1| - 0.01 16.2 8.6 0.01 16.2 8.6 8.1 6 3 2 8 8 7 0 Domain of unknown function (DUF1771) PTS_IIA PF02255.16 gi|14601572|ref|NP_148112.1| - 0.036 14.1 51.3 0.092 12.8 0.0 8.4 4 3 3 7 7 7 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF883 PF05957.13 gi|14601572|ref|NP_148112.1| - 0.15 12.7 64.0 3 8.5 3.6 9.1 3 1 5 9 9 9 0 Bacterial protein of unknown function (DUF883) Tape_meas_lam_C PF09718.10 gi|14601572|ref|NP_148112.1| - 0.33 11.1 4.7 13 6.0 0.5 4.5 3 1 1 4 4 4 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF948 PF06103.11 gi|14601572|ref|NP_148112.1| - 0.4 11.0 36.8 2.1 8.7 4.2 8.5 4 2 2 6 6 5 0 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.10 gi|14601572|ref|NP_148112.1| - 0.5 10.6 27.1 0.91 9.7 0.3 6.0 4 1 0 6 6 6 0 Fibrinogen alpha/beta chain family Zw10 PF06248.13 gi|14601572|ref|NP_148112.1| - 1.2 7.6 29.5 0.73 8.3 5.9 3.6 1 1 2 3 3 3 0 Centromere/kinetochore Zw10 Mustang PF15682.5 gi|14601572|ref|NP_148112.1| - 2.2 8.4 5.2 4.7 7.4 0.0 4.0 4 0 0 4 4 4 0 Musculoskeletal, temporally activated-embryonic nuclear protein 1 DUF713 PF05218.14 gi|14601572|ref|NP_148112.1| - 2.4 7.8 10.3 6.4 6.5 0.0 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF713) Synaptobrevin PF00957.21 gi|14601572|ref|NP_148112.1| - 2.5 7.9 16.0 0.75 9.6 0.8 4.5 3 2 1 4 4 4 0 Synaptobrevin DUF1664 PF07889.12 gi|14601572|ref|NP_148112.1| - 4.1 7.5 34.9 0.044 13.8 2.7 6.5 2 2 4 7 7 7 0 Protein of unknown function (DUF1664) ING PF12998.7 gi|14601572|ref|NP_148112.1| - 4.2 8.0 29.9 0.47 11.1 1.0 6.0 2 1 3 5 5 5 0 Inhibitor of growth proteins N-terminal histone-binding APG17 PF04108.12 gi|14601572|ref|NP_148112.1| - 4.7 6.2 47.6 0.51 9.4 5.9 6.3 2 2 4 6 6 6 0 Autophagy protein Apg17 YfdX PF10938.8 gi|14601572|ref|NP_148112.1| - 6.1 6.8 69.1 0.29 11.1 9.2 7.8 3 2 2 5 5 5 0 YfdX protein TarH PF02203.15 gi|14601572|ref|NP_148112.1| - 6.2 6.7 40.5 0.054 13.4 0.6 5.6 2 1 2 5 5 5 0 Tar ligand binding domain homologue Baculo_p24 PF05073.12 gi|14601572|ref|NP_148112.1| - 6.3 6.5 10.2 2.6 7.8 0.9 3.6 2 1 2 4 4 4 0 Baculovirus P24 capsid protein HTH_24 PF13412.6 gi|14601575|ref|NP_148115.1| - 2.2e-09 36.7 0.0 4.4e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|14601575|ref|NP_148115.1| - 2e-05 24.3 0.1 3.8e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|14601575|ref|NP_148115.1| - 0.00074 19.4 0.0 0.0015 18.3 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|14601575|ref|NP_148115.1| - 0.0013 18.6 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|14601575|ref|NP_148115.1| - 0.0031 17.3 0.1 0.0067 16.2 0.1 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|14601575|ref|NP_148115.1| - 0.0056 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|14601575|ref|NP_148115.1| - 0.017 15.0 0.0 0.067 13.1 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4307 PF14155.6 gi|14601575|ref|NP_148115.1| - 0.025 14.4 5.5 0.45 10.4 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) HTH_20 PF12840.7 gi|14601575|ref|NP_148115.1| - 0.045 13.8 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|14601575|ref|NP_148115.1| - 0.08 12.9 0.2 0.23 11.5 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.6 gi|14601575|ref|NP_148115.1| - 0.12 12.9 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sid-5 PF17204.3 gi|14601575|ref|NP_148115.1| - 0.18 12.0 0.4 2 8.6 0.2 2.1 2 0 0 2 2 2 0 Sid-5 family Citrate_synt PF00285.21 gi|14601576|ref|NP_148116.1| - 2.6e-107 359.1 0.0 2.9e-107 358.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain CitG PF01874.16 gi|118431563|ref|NP_148117.2| - 3.6e-35 122.0 0.0 4.2e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF4928 PF16280.5 gi|118431563|ref|NP_148117.2| - 0.073 12.3 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4928) SOGA PF11365.8 gi|14601578|ref|NP_148118.1| - 0.01 16.9 0.0 0.012 16.8 0.0 1.1 1 0 0 1 1 1 0 Protein SOGA Glu-tRNAGln PF02686.15 gi|14601578|ref|NP_148118.1| - 0.064 13.6 0.0 0.1 12.9 0.0 1.4 1 1 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|118431564|ref|NP_148119.2| - 5.7e-120 401.3 0.0 6.4e-120 401.1 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|14601580|ref|NP_148120.1| - 2.3e-88 296.2 0.0 3.1e-88 295.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|14601580|ref|NP_148120.1| - 2.1e-28 99.1 0.0 3.4e-28 98.4 0.0 1.4 1 0 0 1 1 1 1 GatB domain DUF4366 PF14283.6 gi|118431565|ref|NP_148121.2| - 0.061 13.4 0.1 0.099 12.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Cytochrome_CBB3 PF13442.6 gi|118431565|ref|NP_148121.2| - 0.1 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Thioredoxin_2 PF13098.6 gi|118431565|ref|NP_148121.2| - 0.12 12.8 0.0 0.16 12.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain COX2 PF00116.20 gi|14601582|ref|NP_148122.1| - 4.7e-08 32.9 0.0 7.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain SCO1-SenC PF02630.14 gi|14601583|ref|NP_148123.1| - 3.1e-07 30.4 0.0 1.5e-06 28.2 0.0 1.9 1 1 1 2 2 2 1 SCO1/SenC Thioredoxin PF00085.20 gi|14601584|ref|NP_148124.1| - 2.3e-08 33.9 0.0 5.1e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|14601584|ref|NP_148124.1| - 0.00044 20.7 0.0 0.0011 19.3 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|14601584|ref|NP_148124.1| - 0.0014 18.6 0.0 0.0036 17.3 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|14601584|ref|NP_148124.1| - 0.049 13.4 0.0 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein PCuAC PF04314.13 gi|118431566|ref|YP_874912.1| - 6e-10 38.9 0.1 7.8e-10 38.5 0.1 1.2 1 0 0 1 1 1 1 Copper chaperone PCu(A)C Methyltransf_3 PF01596.17 gi|118431567|ref|NP_148125.2| - 2.5e-08 33.3 0.0 3.5e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|118431567|ref|NP_148125.2| - 7.9e-05 23.6 0.0 0.00011 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|118431567|ref|NP_148125.2| - 0.024 14.6 0.0 0.03 14.3 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|118431567|ref|NP_148125.2| - 0.053 13.1 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|118431567|ref|NP_148125.2| - 0.065 13.9 0.0 0.11 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|118431567|ref|NP_148125.2| - 0.077 12.7 0.0 0.099 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Rieske PF00355.26 gi|118431568|ref|NP_148126.2| - 3.2e-12 46.2 0.0 6e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain CytB6-F_Fe-S PF08802.10 gi|118431568|ref|NP_148126.2| - 0.0044 17.0 0.3 0.0044 17.0 0.3 1.8 2 0 0 2 2 2 1 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.9 gi|118431568|ref|NP_148126.2| - 0.0053 16.6 0.2 0.009 15.8 0.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence zf-HC2 PF13490.6 gi|118431568|ref|NP_148126.2| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative zinc-finger Cytochrom_B_N_2 PF13631.6 gi|14601587|ref|NP_148127.1| - 3.1e-30 105.4 1.7 3.1e-30 105.4 1.7 3.3 3 2 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|14601587|ref|NP_148127.1| - 1.3e-15 57.7 7.2 1.3e-15 57.7 7.2 2.1 2 0 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|14601587|ref|NP_148127.1| - 0.0016 18.7 3.1 0.0016 18.7 3.1 3.1 4 0 0 4 4 4 1 Cytochrome b(C-terminal)/b6/petD VKOR PF07884.14 gi|118431569|ref|NP_148128.2| - 2.8e-14 53.4 9.5 3.5e-14 53.1 9.5 1.1 1 0 0 1 1 1 1 Vitamin K epoxide reductase family SBP_bac_1 PF01547.25 gi|14601589|ref|NP_148129.1| - 3.8e-28 99.3 3.5 1.4e-27 97.5 3.5 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|14601589|ref|NP_148129.1| - 3.2e-21 76.4 0.1 5.2e-21 75.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|14601589|ref|NP_148129.1| - 2e-20 73.3 0.1 2.9e-20 72.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|14601589|ref|NP_148129.1| - 7.8e-11 42.2 0.1 1.8e-10 41.0 0.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Rhomboid_N PF12122.8 gi|14601589|ref|NP_148129.1| - 0.086 13.0 0.0 7.9 6.7 0.0 2.5 2 0 0 2 2 2 0 Cytoplasmic N-terminal domain of rhomboid serine protease RHS PF03527.14 gi|14601589|ref|NP_148129.1| - 0.11 12.2 0.0 0.34 10.7 0.0 1.9 1 0 0 1 1 1 0 RHS protein BPD_transp_1 PF00528.22 gi|118431570|ref|NP_148130.2| - 6.5e-20 71.6 33.1 1.3e-12 47.8 10.7 3.7 2 2 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component Sulfotransfer_3 PF13469.6 gi|118431570|ref|NP_148130.2| - 0.23 11.8 0.0 0.35 11.2 0.0 1.2 1 0 0 1 1 1 0 Sulfotransferase family ABC_tran PF00005.27 gi|14601591|ref|NP_148131.1| - 1.2e-33 116.5 0.0 2.2e-33 115.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|14601591|ref|NP_148131.1| - 2.1e-11 43.9 1.1 3.9e-08 33.5 0.0 3.4 3 1 0 3 3 3 2 TOBE domain TOBE_2 PF08402.10 gi|14601591|ref|NP_148131.1| - 5.8e-10 39.2 2.6 8.6e-10 38.7 0.0 2.6 3 1 1 4 4 4 1 TOBE domain AAA_21 PF13304.6 gi|14601591|ref|NP_148131.1| - 1.1e-06 28.7 0.3 0.0027 17.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RNA_helicase PF00910.22 gi|14601591|ref|NP_148131.1| - 0.0012 19.2 0.0 0.0031 17.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Rad17 PF03215.15 gi|14601591|ref|NP_148131.1| - 0.0014 18.5 0.0 0.0022 17.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|14601591|ref|NP_148131.1| - 0.0095 16.3 0.1 0.014 15.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|14601591|ref|NP_148131.1| - 0.022 15.2 0.3 0.072 13.5 0.3 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) eIF-1a PF01176.19 gi|14601591|ref|NP_148131.1| - 0.048 13.5 0.4 0.41 10.5 0.2 2.4 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 AAA_22 PF13401.6 gi|14601591|ref|NP_148131.1| - 0.053 13.8 1.5 0.32 11.3 1.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|14601591|ref|NP_148131.1| - 0.081 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|14601591|ref|NP_148131.1| - 0.1 12.4 0.0 0.51 10.1 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|14601591|ref|NP_148131.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase HSM3_N PF18795.1 gi|14601591|ref|NP_148131.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain AAA_33 PF13671.6 gi|14601591|ref|NP_148131.1| - 0.17 12.0 0.9 1.7 8.8 0.9 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|14601591|ref|NP_148131.1| - 0.23 12.0 0.2 0.36 11.3 0.2 1.2 1 0 0 1 1 1 0 AAA domain Methyltrn_RNA_2 PF04013.12 gi|118431571|ref|NP_148132.2| - 0.061 13.0 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase SRP54 PF00448.22 gi|14601593|ref|NP_148133.1| - 4.5e-64 215.7 0.0 6.2e-64 215.2 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|14601593|ref|NP_148133.1| - 3.7e-29 101.3 0.7 9.5e-28 96.7 1.1 2.6 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|14601593|ref|NP_148133.1| - 4.7e-15 55.6 0.0 1.4e-14 54.0 0.0 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|14601593|ref|NP_148133.1| - 5.9e-05 23.1 0.0 0.00012 22.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|14601593|ref|NP_148133.1| - 7.1e-05 23.2 0.0 0.00019 21.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|14601593|ref|NP_148133.1| - 0.00016 21.5 0.1 0.00053 19.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|14601593|ref|NP_148133.1| - 0.00053 19.9 0.0 0.0012 18.8 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|14601593|ref|NP_148133.1| - 0.00053 20.2 0.0 0.0012 19.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|14601593|ref|NP_148133.1| - 0.0015 17.9 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin ATPase PF06745.13 gi|14601593|ref|NP_148133.1| - 0.0026 17.1 0.0 0.0078 15.6 0.0 1.8 1 0 0 1 1 1 1 KaiC MMR_HSR1 PF01926.23 gi|14601593|ref|NP_148133.1| - 0.0033 17.5 0.0 0.017 15.2 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|14601593|ref|NP_148133.1| - 0.0064 16.8 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|14601593|ref|NP_148133.1| - 0.011 14.8 0.0 0.027 13.5 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|14601593|ref|NP_148133.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|14601593|ref|NP_148133.1| - 0.017 15.1 0.1 0.061 13.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|14601593|ref|NP_148133.1| - 0.03 14.9 0.0 0.075 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|14601593|ref|NP_148133.1| - 0.032 14.1 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|14601593|ref|NP_148133.1| - 0.033 14.6 0.0 0.21 12.0 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ParA PF10609.9 gi|14601593|ref|NP_148133.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|14601593|ref|NP_148133.1| - 0.048 13.2 0.0 0.15 11.6 0.0 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.10 gi|14601593|ref|NP_148133.1| - 0.065 12.7 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.17 gi|14601593|ref|NP_148133.1| - 0.074 12.8 0.4 1.8 8.3 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|14601593|ref|NP_148133.1| - 0.091 13.0 0.3 0.21 11.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain CLP1_P PF16575.5 gi|14601593|ref|NP_148133.1| - 0.092 12.5 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PFOR_II PF17147.4 gi|14601593|ref|NP_148133.1| - 0.1 12.9 0.0 1.6 9.1 0.0 2.5 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_25 PF13481.6 gi|14601593|ref|NP_148133.1| - 0.18 11.3 1.0 0.7 9.4 1.0 1.9 1 1 0 1 1 1 0 AAA domain HTH_20 PF12840.7 gi|14601593|ref|NP_148133.1| - 0.25 11.5 1.3 16 5.7 0.2 4.1 4 1 1 5 5 5 0 Helix-turn-helix domain AAA_17 PF13207.6 gi|14601593|ref|NP_148133.1| - 0.29 11.6 3.3 0.34 11.3 0.1 2.6 3 0 0 3 3 2 0 AAA domain Ribosomal_S13 PF00416.22 gi|118431572|ref|NP_148134.2| - 2.9e-43 147.3 0.1 3.3e-43 147.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 DUF5053 PF16476.5 gi|118431572|ref|NP_148134.2| - 0.0065 16.1 0.1 0.036 13.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF5053) Qn_am_d_aIII PF09099.10 gi|118431572|ref|NP_148134.2| - 0.019 15.3 0.1 0.046 14.1 0.0 1.7 2 0 0 2 2 2 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III FbpA PF05833.11 gi|118431572|ref|NP_148134.2| - 0.097 11.4 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|118431573|ref|NP_148135.2| - 7.8e-16 57.5 0.2 1.9e-15 56.3 0.2 1.7 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|118431573|ref|NP_148135.2| - 1e-07 32.8 0.5 7.8e-07 29.9 0.2 2.0 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|118431574|ref|NP_148136.2| - 6.7e-48 161.7 3.7 8.4e-48 161.4 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 M20_dimer PF07687.14 gi|118431574|ref|NP_148136.2| - 0.08 12.9 0.3 0.14 12.1 0.3 1.4 1 0 0 1 1 1 0 Peptidase dimerisation domain Ribosomal_S30AE PF02482.19 gi|118431574|ref|NP_148136.2| - 0.089 13.6 0.0 0.14 13.0 0.0 1.2 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein RNA_pol_A_bac PF01000.26 gi|118431575|ref|NP_148137.2| - 2.7e-26 92.2 0.0 4.4e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|118431575|ref|NP_148137.2| - 4.5e-15 54.8 0.0 5.6e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18 PF17135.4 gi|14601599|ref|NP_148139.1| - 3.3e-07 29.9 0.6 3.8e-07 29.7 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|14601599|ref|NP_148139.1| - 0.00026 21.7 0.1 0.00041 21.0 0.1 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|14601600|ref|NP_148140.1| - 8e-13 48.7 0.2 1.6e-10 41.3 0.2 2.1 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|14601601|ref|NP_148141.1| - 8.6e-32 110.2 0.0 1e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|14601602|ref|NP_148142.1| - 9.6e-25 86.7 0.0 1.1e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|14601602|ref|NP_148142.1| - 0.012 15.8 0.0 0.017 15.3 0.0 1.3 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S14 PF00253.21 gi|14601602|ref|NP_148142.1| - 0.31 10.8 2.8 2.3 8.0 0.6 2.6 2 1 0 2 2 2 0 Ribosomal protein S14p/S29e Ribosomal_S2 PF00318.20 gi|14601603|ref|NP_148143.1| - 6.4e-22 77.8 0.3 4.7e-17 62.0 0.4 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_binding PF01877.17 gi|14601604|ref|NP_148144.1| - 7.6e-20 71.4 0.1 1.1e-19 70.9 0.1 1.2 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|118431576|ref|NP_148145.2| - 1.6e-16 61.0 0.1 2.2e-16 60.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|118431576|ref|NP_148145.2| - 2.3e-11 44.3 0.1 3.2e-11 43.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|118431576|ref|NP_148145.2| - 1.9e-08 34.6 0.1 3.4e-08 33.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|118431576|ref|NP_148145.2| - 1.3e-06 27.9 0.0 1.7e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin CoaE PF01121.20 gi|118431576|ref|NP_148145.2| - 4.4e-05 23.2 0.0 0.068 12.8 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_22 PF13401.6 gi|118431576|ref|NP_148145.2| - 0.00028 21.2 0.0 0.00039 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|118431576|ref|NP_148145.2| - 0.0005 20.2 1.2 0.02 15.0 1.2 2.4 1 1 0 1 1 1 1 Cytidylate kinase-like family APS_kinase PF01583.20 gi|118431576|ref|NP_148145.2| - 0.00054 19.9 0.1 0.0014 18.5 0.1 1.8 1 1 0 1 1 1 1 Adenylylsulphate kinase Cytidylate_kin PF02224.18 gi|118431576|ref|NP_148145.2| - 0.00057 19.7 0.1 0.025 14.3 0.0 2.1 1 1 1 2 2 2 1 Cytidylate kinase AAA_16 PF13191.6 gi|118431576|ref|NP_148145.2| - 0.00065 20.1 0.1 0.00096 19.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain ADK PF00406.22 gi|118431576|ref|NP_148145.2| - 0.0015 18.7 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase AAA PF00004.29 gi|118431576|ref|NP_148145.2| - 0.0017 18.8 0.1 0.0037 17.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|118431576|ref|NP_148145.2| - 0.0046 16.4 0.0 0.0065 15.9 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|118431576|ref|NP_148145.2| - 0.01 15.8 0.3 0.02 14.8 0.2 1.6 1 1 0 1 1 1 1 NTPase RuvB_N PF05496.12 gi|118431576|ref|NP_148145.2| - 0.015 15.1 0.0 0.033 13.9 0.0 1.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|118431576|ref|NP_148145.2| - 0.022 14.8 0.1 0.038 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|118431576|ref|NP_148145.2| - 0.033 13.4 0.0 0.068 12.3 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|118431576|ref|NP_148145.2| - 0.042 13.6 0.3 0.087 12.5 0.3 1.9 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|118431576|ref|NP_148145.2| - 0.042 14.0 0.0 0.09 12.9 0.0 1.7 1 1 0 1 1 1 0 Shikimate kinase DUF2075 PF09848.9 gi|118431576|ref|NP_148145.2| - 0.049 12.9 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|118431576|ref|NP_148145.2| - 0.06 13.6 0.7 0.16 12.2 0.1 2.0 1 1 1 2 2 2 0 AAA domain Torsin PF06309.11 gi|118431576|ref|NP_148145.2| - 0.08 13.0 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Torsin Radical_SAM PF04055.21 gi|118431576|ref|NP_148145.2| - 0.089 13.2 0.1 0.26 11.6 0.1 1.7 1 1 0 1 1 1 0 Radical SAM superfamily MeaB PF03308.16 gi|118431576|ref|NP_148145.2| - 0.09 11.7 0.2 0.36 9.8 0.1 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Arm-DNA-bind_2 PF12167.8 gi|118431576|ref|NP_148145.2| - 0.17 11.8 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Arm DNA-binding domain Aminotran_5 PF00266.19 gi|118431577|ref|NP_148146.2| - 1e-35 123.4 0.0 2.4e-35 122.2 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|118431577|ref|NP_148146.2| - 8.9e-08 31.7 0.0 2e-07 30.5 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|118431577|ref|NP_148146.2| - 3.9e-05 22.3 0.0 6e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|118431577|ref|NP_148146.2| - 8.3e-05 22.0 0.1 0.00014 21.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA-synt_1d PF00750.19 gi|14601607|ref|NP_148147.1| - 8.7e-33 113.7 0.0 7.3e-20 71.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|14601607|ref|NP_148147.1| - 3.4e-28 98.2 0.0 6.5e-28 97.3 0.0 1.5 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|14601607|ref|NP_148147.1| - 0.0011 19.5 0.0 0.0038 17.8 0.0 2.0 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|14601607|ref|NP_148147.1| - 0.005 15.8 0.0 0.55 9.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|14601607|ref|NP_148147.1| - 0.066 11.4 0.0 0.15 10.3 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|14601607|ref|NP_148147.1| - 0.17 10.6 0.0 0.8 8.4 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (M) RtcB PF01139.17 gi|118431578|ref|NP_148148.2| - 2.5e-166 554.0 0.0 2.8e-166 553.8 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB PGM_PMM_IV PF00408.20 gi|118431578|ref|NP_148148.2| - 0.016 15.3 0.1 0.054 13.7 0.1 1.8 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain Complex1_LYR PF05347.15 gi|118431578|ref|NP_148148.2| - 0.076 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Glycoamylase PF10091.9 gi|118431578|ref|NP_148148.2| - 0.11 12.0 0.0 7.7 6.0 0.0 2.4 2 0 0 2 2 2 0 Putative glucoamylase Glyco_hydro_45 PF02015.16 gi|118431578|ref|NP_148148.2| - 0.21 11.5 0.0 0.41 10.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 45 CYTH PF01928.21 gi|118431579|ref|NP_148149.2| - 2.5e-27 95.9 2.2 3e-27 95.7 2.2 1.1 1 0 0 1 1 1 1 CYTH domain DUF2118 PF09891.9 gi|14601611|ref|NP_148151.1| - 1.8e-52 177.3 1.7 2.1e-52 177.1 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) polyprenyl_synt PF00348.17 gi|118431580|ref|NP_148152.2| - 6.2e-68 228.6 0.0 7.6e-68 228.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase FMN_dh PF01070.18 gi|118431581|ref|NP_148153.2| - 2.8e-16 59.5 2.8 2.5e-13 49.8 2.0 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|118431581|ref|NP_148153.2| - 0.0021 17.1 1.0 0.0051 15.9 0.2 1.9 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|118431581|ref|NP_148153.2| - 0.003 16.7 0.4 0.0051 16.0 0.4 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|118431582|ref|NP_148154.2| - 3.4e-26 92.3 0.3 4.7e-26 91.9 0.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family Memo PF01875.17 gi|14601616|ref|NP_148156.1| - 8.5e-69 231.7 0.0 9.7e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein MatE PF01554.18 gi|118431584|ref|NP_148157.2| - 1.1e-43 148.7 26.6 2.6e-22 79.2 6.1 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|118431584|ref|NP_148157.2| - 9.4e-09 35.5 6.1 9.4e-09 35.5 6.1 4.7 2 2 1 5 5 5 1 Polysaccharide biosynthesis C-terminal domain TMEM239 PF15841.5 gi|118431584|ref|NP_148157.2| - 0.039 13.9 3.4 0.18 11.7 3.4 2.1 1 0 0 1 1 1 0 Transmembrane protein 239 family Peptidase_M32 PF02074.15 gi|118431585|ref|NP_148158.2| - 1.5e-158 528.6 0.0 1.7e-158 528.4 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase HTH_IclR PF09339.10 gi|118431586|ref|YP_874913.1| - 0.039 13.7 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|118431586|ref|YP_874913.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|118431586|ref|YP_874913.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.6 gi|118431586|ref|YP_874913.1| - 0.13 11.8 0.1 1.3 8.7 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding ASCH PF04266.14 gi|118431587|ref|NP_148160.2| - 0.0071 16.9 0.0 0.0093 16.5 0.0 1.3 1 1 0 1 1 1 1 ASCH domain SIR2 PF02146.17 gi|118431588|ref|NP_148161.2| - 4.1e-56 189.7 0.0 4.9e-56 189.5 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|118431588|ref|NP_148161.2| - 0.0028 17.7 1.0 0.0051 16.9 1.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|118431588|ref|NP_148161.2| - 0.0081 16.2 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|118431588|ref|NP_148161.2| - 0.11 12.6 0.4 0.18 11.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|118431588|ref|NP_148161.2| - 0.23 11.2 2.5 1 9.1 2.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|118431588|ref|NP_148161.2| - 0.34 10.4 2.2 2.7 7.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|118431588|ref|NP_148161.2| - 0.38 10.7 2.0 4.7 7.2 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|118431588|ref|NP_148161.2| - 0.73 9.4 3.2 8.7 6.0 0.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|118431588|ref|NP_148161.2| - 2 8.4 4.5 19 5.2 4.5 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain SelB-wing_2 PF09106.11 gi|118431590|ref|NP_148164.2| - 0.1 12.8 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Elongation factor SelB, winged helix FUN14 PF04930.15 gi|118431590|ref|NP_148164.2| - 0.15 12.5 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 FUN14 family Aldedh PF00171.22 gi|118431591|ref|NP_148165.2| - 2e-120 402.5 0.0 2.2e-120 402.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|118431591|ref|NP_148165.2| - 4e-06 26.1 0.0 8.1e-05 21.8 0.0 2.3 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.11 gi|118431591|ref|NP_148165.2| - 0.032 13.7 0.0 5 6.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) Trm112p PF03966.16 gi|118431592|ref|NP_148166.2| - 0.15 12.7 0.3 5.8 7.6 0.3 2.1 1 1 0 1 1 1 0 Trm112p-like protein zf_UBZ PF18439.1 gi|118431592|ref|NP_148166.2| - 0.24 11.0 1.4 15 5.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-IS66 PF13005.7 gi|118431592|ref|NP_148166.2| - 2.3 8.7 6.1 3.1e+02 1.9 0.0 3.0 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 tRNA_NucTransf2 PF09249.11 gi|118431594|ref|NP_148168.2| - 7.8e-39 132.4 0.0 1.1e-38 131.9 0.0 1.2 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|118431594|ref|NP_148168.2| - 2.5e-19 69.3 0.0 3.9e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.16 gi|14601629|ref|NP_148169.1| - 5.6e-33 113.0 0.1 1.3e-16 60.6 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|14601629|ref|NP_148169.1| - 1.1e-13 51.3 0.0 1.4e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|14601629|ref|NP_148169.1| - 1.8e-08 34.5 0.0 4.4e-08 33.3 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|14601629|ref|NP_148169.1| - 0.012 15.0 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein FeoA PF04023.14 gi|14601629|ref|NP_148169.1| - 0.13 12.5 0.7 2.8 8.2 0.1 2.6 2 0 0 2 2 2 0 FeoA domain Topoisom_bac PF01131.20 gi|14601630|ref|NP_148170.1| - 3.5e-103 345.8 0.0 4.1e-103 345.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|14601630|ref|NP_148170.1| - 2.3e-08 34.2 0.0 5.5e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 Toprim domain CHZ PF09649.10 gi|14601630|ref|NP_148170.1| - 0.042 13.3 0.5 0.086 12.3 0.5 1.5 1 0 0 1 1 1 0 Histone chaperone domain CHZ Peptidase_S24 PF00717.23 gi|118431595|ref|NP_148171.2| - 6.8e-09 35.6 0.6 1.1e-08 34.9 0.6 1.4 1 0 0 1 1 1 1 Peptidase S24-like B3_4 PF03483.17 gi|14601632|ref|NP_148172.1| - 1.4e-30 106.2 0.0 3.6e-30 104.9 0.0 1.5 2 0 0 2 2 2 1 B3/4 domain Inositol_P PF00459.25 gi|118431596|ref|NP_148173.2| - 3.7e-39 134.9 0.3 4.2e-39 134.7 0.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|118431596|ref|NP_148173.2| - 0.13 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain DZR PF12773.7 gi|118431597|ref|NP_148174.2| - 0.18 11.8 11.8 1.8 8.6 6.0 2.3 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|118431597|ref|NP_148174.2| - 0.49 10.2 14.3 0.051 13.3 6.9 2.7 3 0 0 3 3 3 0 zinc-ribbon domain AsnC_trans_reg PF01037.21 gi|118431598|ref|YP_874914.1| - 1.5e-10 40.9 0.1 1.8e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|118431598|ref|YP_874914.1| - 0.0027 17.7 0.1 0.0035 17.4 0.1 1.2 1 0 0 1 1 1 1 NapD protein GYD PF08734.11 gi|118431598|ref|YP_874914.1| - 0.014 15.4 0.0 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 GYD domain eRF1_3 PF03465.15 gi|118431599|ref|NP_148176.2| - 9.7e-22 77.6 0.0 2.3e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|118431599|ref|NP_148176.2| - 9e-18 64.5 0.0 1.5e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.15 gi|118431599|ref|NP_148176.2| - 1.6e-05 25.2 0.0 3.5e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 MDMPI_N PF11716.8 gi|118431599|ref|NP_148176.2| - 0.054 14.2 5.9 0.037 14.7 2.1 2.5 1 1 2 3 3 3 0 Mycothiol maleylpyruvate isomerase N-terminal domain GlutR_dimer PF00745.20 gi|118431599|ref|NP_148176.2| - 0.079 13.4 1.1 14 6.2 0.2 3.2 3 0 0 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain tRNA-synt_1 PF00133.22 gi|118431600|ref|NP_148179.2| - 1.5e-111 373.6 0.0 2.2e-110 369.7 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|118431600|ref|NP_148179.2| - 8e-23 81.1 0.1 1.5e-22 80.2 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|118431600|ref|NP_148179.2| - 1.1e-22 80.3 0.0 2.6e-12 46.2 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) DZR PF12773.7 gi|118431600|ref|NP_148179.2| - 0.0021 18.0 1.8 0.21 11.7 0.3 3.1 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1_2 PF13603.6 gi|118431600|ref|NP_148179.2| - 0.01 15.3 0.0 0.24 10.9 0.0 2.2 1 1 1 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|118431600|ref|NP_148179.2| - 0.11 11.9 0.0 9.5 5.5 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain zf-IS66 PF13005.7 gi|118431600|ref|NP_148179.2| - 0.41 11.1 5.0 73 3.9 0.0 3.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|118431600|ref|NP_148179.2| - 1.5 8.2 7.3 8.7 5.8 0.1 3.9 4 0 0 4 4 4 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.19 gi|118431600|ref|NP_148179.2| - 2.1 8.2 4.9 5.4 6.9 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|118431600|ref|NP_148179.2| - 3.7 7.7 5.9 45 4.3 2.9 3.2 2 1 1 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|118431600|ref|NP_148179.2| - 4.9 6.7 10.5 9.5 5.8 0.4 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|118431600|ref|NP_148179.2| - 5.6 7.7 10.3 6.8 7.4 0.1 3.9 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.11 gi|118431600|ref|NP_148179.2| - 9.1 6.0 6.0 17 5.2 0.5 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain YdjM PF04307.14 gi|14601640|ref|NP_148181.1| - 4.2e-15 55.5 7.1 1.6e-14 53.6 7.1 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase COPI_assoc PF08507.10 gi|14601640|ref|NP_148181.1| - 0.49 10.4 5.3 0.26 11.4 1.5 2.3 1 1 1 2 2 2 0 COPI associated protein ABC_ATPase PF09818.9 gi|14601641|ref|NP_148182.1| - 2e-151 504.8 0.0 2.6e-151 504.4 0.0 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|14601641|ref|NP_148182.1| - 0.0034 17.9 0.0 0.0064 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.17 gi|14601641|ref|NP_148182.1| - 0.089 11.9 0.1 0.17 10.9 0.1 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 YdjM PF04307.14 gi|118431601|ref|NP_148183.2| - 0.00018 20.9 8.7 0.00098 18.5 8.7 2.1 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1286 PF06939.11 gi|118431601|ref|NP_148183.2| - 0.0024 18.1 0.3 0.0048 17.1 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) VIT1 PF01988.19 gi|118431602|ref|NP_148184.2| - 1.5e-09 38.0 25.7 1.2e-05 25.3 7.5 2.4 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|118431602|ref|NP_148184.2| - 1.5e-06 28.6 9.6 9.9e-06 26.0 9.2 2.1 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|118431602|ref|NP_148184.2| - 7.2e-05 22.6 0.1 7.2e-05 22.6 0.1 2.1 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.6 gi|118431602|ref|NP_148184.2| - 0.00054 20.2 0.7 0.26 11.5 0.0 2.9 1 1 1 2 2 2 2 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|118431602|ref|NP_148184.2| - 0.031 13.1 0.0 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase TcdA_TcdB_pore PF12920.7 gi|118431602|ref|NP_148184.2| - 0.076 11.3 0.2 0.1 10.9 0.2 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Ferritin PF00210.24 gi|118431602|ref|NP_148184.2| - 0.64 10.0 3.0 0.49 10.3 0.8 1.8 2 0 0 2 2 2 0 Ferritin-like domain RPAP1_N PF08621.10 gi|118431602|ref|NP_148184.2| - 0.98 9.2 7.0 1.1 9.1 1.0 2.5 2 0 0 2 2 2 0 RPAP1-like, N-terminal HlyE PF06109.13 gi|118431602|ref|NP_148184.2| - 2.1 7.6 3.9 3.6 6.8 3.9 1.4 1 0 0 1 1 1 0 Haemolysin E (HlyE) Lyase_1 PF00206.20 gi|118431603|ref|NP_148185.2| - 5.8e-86 288.7 0.1 7.5e-86 288.3 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|118431603|ref|NP_148185.2| - 1.6e-08 34.8 3.9 1.8e-08 34.6 0.3 3.1 4 0 0 4 4 4 1 Fumarase C C-terminus Lant_dehydr_C PF14028.6 gi|118431603|ref|NP_148185.2| - 0.055 13.0 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Lantibiotic biosynthesis dehydratase C-term DUF2148 PF09918.9 gi|118431603|ref|NP_148185.2| - 0.26 11.3 1.7 11 6.2 0.1 3.3 3 0 0 3 3 3 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) RadC PF04002.15 gi|118431603|ref|NP_148185.2| - 0.41 10.6 2.0 10 6.1 0.8 2.9 2 1 1 3 3 3 0 RadC-like JAB domain DUF2286 PF10051.9 gi|118431604|ref|NP_148186.2| - 3.9e-42 143.3 0.1 4.3e-42 143.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Ribosomal_L7Ae PF01248.26 gi|14601646|ref|NP_148187.1| - 8.1e-33 112.0 0.3 1e-32 111.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|14601646|ref|NP_148187.1| - 3.9e-05 23.5 0.4 8.5e-05 22.4 0.2 1.7 1 1 1 2 2 2 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|14601646|ref|NP_148187.1| - 0.066 13.3 0.0 0.069 13.2 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 TruD PF01142.18 gi|14601647|ref|NP_148188.1| - 1.1e-18 67.3 0.0 2.4e-11 43.1 0.0 3.2 1 1 2 3 3 3 3 tRNA pseudouridine synthase D (TruD) FAD_oxidored PF12831.7 gi|14601648|ref|NP_148189.1| - 5.9e-10 39.1 0.1 9.7e-10 38.4 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|14601648|ref|NP_148189.1| - 2.4e-07 30.7 6.1 1.8e-06 27.8 6.0 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|14601648|ref|NP_148189.1| - 2.5e-07 30.8 1.7 2.5e-07 30.8 1.7 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|14601648|ref|NP_148189.1| - 4.5e-07 29.3 2.9 4.3e-06 26.1 3.0 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|14601648|ref|NP_148189.1| - 1.4e-05 24.6 1.5 2.2e-05 23.9 1.5 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|14601648|ref|NP_148189.1| - 1.9e-05 24.0 1.4 3.3e-05 23.1 1.4 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|14601648|ref|NP_148189.1| - 2e-05 24.0 1.5 2.1e-05 23.9 0.3 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|14601648|ref|NP_148189.1| - 0.00023 20.5 0.4 0.00038 19.8 0.4 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|14601648|ref|NP_148189.1| - 0.00029 21.4 2.3 0.0019 18.7 0.9 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|14601648|ref|NP_148189.1| - 0.00037 19.3 0.6 0.00053 18.8 0.6 1.2 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.24 gi|14601648|ref|NP_148189.1| - 0.0018 17.7 1.6 0.0036 16.6 1.6 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|14601648|ref|NP_148189.1| - 0.059 12.4 1.5 0.1 11.6 1.5 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|14601648|ref|NP_148189.1| - 1.8 7.4 6.1 0.15 10.9 0.9 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Alba PF01918.21 gi|14601649|ref|NP_148190.1| - 8.5e-19 67.2 0.7 1.1e-18 66.8 0.7 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|14601649|ref|NP_148190.1| - 0.013 15.4 2.9 0.28 11.1 2.9 2.1 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P DUF763 PF05559.11 gi|14601650|ref|NP_148191.1| - 2.7e-103 345.4 0.0 3.2e-103 345.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Methyltransf_19 PF04672.12 gi|14601650|ref|NP_148191.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl methyltransferase Glt_symporter PF03616.14 gi|14601650|ref|NP_148191.1| - 0.16 10.6 0.1 0.21 10.3 0.1 1.1 1 0 0 1 1 1 0 Sodium/glutamate symporter NAD_kinase PF01513.21 gi|118431605|ref|NP_148192.2| - 6.4e-47 160.1 0.0 7.3e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|118431605|ref|NP_148192.2| - 8.4e-06 25.4 0.1 2.6e-05 23.8 0.1 1.9 2 1 0 2 2 2 1 Diacylglycerol kinase catalytic domain ABC2_membrane PF01061.24 gi|118431606|ref|NP_148194.2| - 3.2e-08 33.3 21.5 3.2e-08 33.3 21.5 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane PF01061.24 gi|118431607|ref|NP_148195.2| - 1.4e-10 40.9 19.7 1.4e-10 40.9 19.7 1.6 1 1 0 1 1 1 1 ABC-2 type transporter PDR_assoc PF08370.11 gi|118431607|ref|NP_148195.2| - 0.048 13.4 0.1 0.18 11.6 0.1 2.0 1 0 0 1 1 1 0 Plant PDR ABC transporter associated ABC2_membrane_3 PF12698.7 gi|118431607|ref|NP_148195.2| - 5.1 6.1 27.9 13 4.8 27.9 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|14601655|ref|NP_148196.1| - 3.6e-27 95.5 0.0 5.1e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14601655|ref|NP_148196.1| - 1.7e-16 60.9 0.1 9.4e-12 45.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|14601655|ref|NP_148196.1| - 0.0002 21.2 0.0 0.43 10.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|14601655|ref|NP_148196.1| - 0.01 14.5 0.0 1.5 7.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|14601655|ref|NP_148196.1| - 0.029 14.1 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|14601655|ref|NP_148196.1| - 0.036 14.8 0.0 0.098 13.4 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) SRP54 PF00448.22 gi|14601655|ref|NP_148196.1| - 0.052 13.2 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|14601655|ref|NP_148196.1| - 0.053 14.0 0.0 0.091 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|14601655|ref|NP_148196.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain 2-Hacid_dh_C PF02826.19 gi|118431608|ref|NP_148197.2| - 5.3e-68 227.9 0.0 7.1e-68 227.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|118431608|ref|NP_148197.2| - 2e-39 134.3 0.0 2.3e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|118431608|ref|NP_148197.2| - 0.00034 20.8 0.0 0.0011 19.1 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|118431608|ref|NP_148197.2| - 0.0031 17.1 0.0 0.0072 15.9 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|118431608|ref|NP_148197.2| - 0.04 14.0 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|118431608|ref|NP_148197.2| - 0.16 12.6 0.1 0.82 10.3 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Peptidase_S9 PF00326.21 gi|14601657|ref|NP_148198.1| - 4.2e-55 186.5 0.0 5.9e-55 186.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|14601657|ref|NP_148198.1| - 4.3e-08 33.1 0.0 2.8e-05 23.9 0.2 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold PD40 PF07676.12 gi|14601657|ref|NP_148198.1| - 1e-06 28.5 8.8 6.5e-06 25.9 0.0 5.0 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|14601657|ref|NP_148198.1| - 3.9e-06 26.7 0.0 0.0016 18.0 0.0 2.2 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|14601657|ref|NP_148198.1| - 1e-05 24.9 0.0 0.1 11.8 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|14601657|ref|NP_148198.1| - 9.4e-05 21.2 0.0 0.0041 15.8 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DLH PF01738.18 gi|14601657|ref|NP_148198.1| - 0.00077 19.1 0.0 0.002 17.7 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|14601657|ref|NP_148198.1| - 0.011 15.0 0.0 0.65 9.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Esterase_phd PF10503.9 gi|14601657|ref|NP_148198.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase BAAT_C PF08840.11 gi|14601657|ref|NP_148198.1| - 0.2 11.6 0.0 3.4 7.5 0.0 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Alba PF01918.21 gi|118431609|ref|NP_148199.2| - 4.7e-18 64.8 0.5 7.4e-18 64.1 0.5 1.3 1 0 0 1 1 1 1 Alba Pribosyltran_N PF13793.6 gi|118431610|ref|NP_148200.2| - 5.1e-18 65.1 0.0 9.4e-18 64.3 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|118431610|ref|NP_148200.2| - 8.4e-14 51.4 0.1 1.8e-13 50.3 0.1 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|118431610|ref|NP_148200.2| - 5.6e-10 39.5 0.0 1.2e-08 35.3 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|118431610|ref|NP_148200.2| - 0.0065 15.9 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase UPF0020 PF01170.18 gi|14601660|ref|NP_148201.1| - 5.8e-48 163.2 0.0 2e-47 161.4 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|14601660|ref|NP_148201.1| - 0.001 18.7 0.0 0.0021 17.7 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|14601660|ref|NP_148201.1| - 0.017 14.7 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain N6_N4_Mtase PF01555.18 gi|14601660|ref|NP_148201.1| - 0.026 14.2 0.0 6 6.5 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Lactamase_B_2 PF12706.7 gi|118431611|ref|NP_148202.2| - 1.7e-13 50.6 0.1 4.1e-12 46.0 0.1 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|118431611|ref|NP_148202.2| - 4.7e-07 30.0 0.2 2.3e-06 27.8 0.1 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily YcaO PF02624.16 gi|118431611|ref|NP_148202.2| - 0.066 12.5 0.0 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding CBS PF00571.28 gi|118431612|ref|NP_148203.2| - 1.1e-28 99.4 1.6 6e-16 58.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_S10 PF00338.22 gi|14601665|ref|NP_148206.1| - 1.1e-26 92.9 0.0 1.2e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NETI PF14044.6 gi|14601665|ref|NP_148206.1| - 0.11 12.3 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 NETI protein GTP_EFTU PF00009.27 gi|14601666|ref|NP_148207.1| - 2.7e-57 193.5 0.0 3.7e-57 193.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|14601666|ref|NP_148207.1| - 2.2e-35 121.3 0.2 7.4e-35 119.6 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|14601666|ref|NP_148207.1| - 2.5e-16 59.8 1.2 8.3e-16 58.1 1.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|14601666|ref|NP_148207.1| - 1.2e-05 25.3 0.1 8e-05 22.7 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|14601666|ref|NP_148207.1| - 0.00011 22.0 0.7 0.00038 20.3 0.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Amelogenin PF02948.15 gi|14601666|ref|NP_148207.1| - 0.0011 19.7 0.7 0.004 17.8 0.1 1.9 2 0 0 2 2 2 1 Amelogenin MRP-S22 PF10245.9 gi|14601666|ref|NP_148207.1| - 0.008 15.9 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial 28S ribosomal protein S22 Dynamin_N PF00350.23 gi|14601666|ref|NP_148207.1| - 0.012 15.7 0.1 3.2 7.8 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Septin PF00735.18 gi|14601666|ref|NP_148207.1| - 0.022 14.1 0.0 0.055 12.7 0.0 1.6 1 1 0 1 1 1 0 Septin Ras PF00071.22 gi|14601666|ref|NP_148207.1| - 0.061 12.9 0.3 0.66 9.6 0.1 2.2 2 0 0 2 2 2 0 Ras family TetR_C_2 PF08361.11 gi|14601666|ref|NP_148207.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Arf PF00025.21 gi|14601666|ref|NP_148207.1| - 0.13 11.7 0.2 0.68 9.4 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosylation factor family Roc PF08477.13 gi|14601666|ref|NP_148207.1| - 0.14 12.4 0.3 6.9 6.9 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ribosomal_S7 PF00177.21 gi|118431614|ref|NP_148208.2| - 1.6e-41 141.4 0.0 2e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Spa1_C PF18218.1 gi|118431614|ref|NP_148208.2| - 0.098 13.1 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Lantibiotic immunity protein Spa1 C-terminal domain DNase-RNase PF02577.14 gi|118431615|ref|NP_148210.2| - 1.2e-08 34.7 0.1 1.5e-08 34.4 0.1 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.25 gi|14601670|ref|NP_148211.1| - 7.8e-47 157.6 0.3 1e-46 157.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|14601671|ref|NP_148212.1| - 2.9e-22 78.3 4.1 6.8e-15 54.7 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|14601671|ref|NP_148212.1| - 6e-13 48.7 4.9 3e-11 43.2 0.2 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|14601671|ref|NP_148212.1| - 6.7e-09 35.5 1.9 0.00015 21.5 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|14601671|ref|NP_148212.1| - 1.4e-07 31.2 1.0 0.0014 18.4 0.1 2.4 2 0 0 2 2 2 2 KH domain Aldedh PF00171.22 gi|14601671|ref|NP_148212.1| - 0.061 11.8 0.0 0.078 11.5 0.0 1.1 1 0 0 1 1 1 0 Aldehyde dehydrogenase family DsbC_N PF10411.9 gi|14601671|ref|NP_148212.1| - 0.12 11.8 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Disulfide bond isomerase protein N-terminus Ribosomal_L7Ae PF01248.26 gi|118431616|ref|NP_148213.2| - 2.2e-20 72.2 0.0 2.4e-20 72.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Peripla_BP_4 PF13407.6 gi|118431616|ref|NP_148213.2| - 0.093 12.3 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain RNA_pol_Rpb1_5 PF04998.17 gi|118431617|ref|NP_148214.2| - 7.2e-57 192.8 0.1 1e-56 192.4 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FhuF PF06276.12 gi|118431617|ref|NP_148214.2| - 0.099 13.0 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 Ferric iron reductase FhuF-like transporter RNA_pol_Rpb1_1 PF04997.12 gi|118431618|ref|NP_148215.2| - 6.2e-78 262.3 0.0 8.5e-78 261.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|118431618|ref|NP_148215.2| - 8.7e-70 234.2 0.0 3e-69 232.5 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|118431618|ref|NP_148215.2| - 1.7e-38 132.0 0.0 3.7e-38 130.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|118431618|ref|NP_148215.2| - 1.6e-30 105.2 0.0 3.5e-30 104.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|118431618|ref|NP_148215.2| - 8.3e-27 94.3 0.1 1.5e-26 93.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|118431618|ref|NP_148215.2| - 0.13 12.4 4.6 0.7 10.1 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain CpXC PF14353.6 gi|118431618|ref|NP_148215.2| - 2.6 8.1 4.1 12 5.9 0.0 3.4 4 0 0 4 4 4 0 CpXC protein zf-HC2 PF13490.6 gi|118431618|ref|NP_148215.2| - 5 7.5 5.1 2.2 8.6 0.0 3.2 4 0 0 4 4 4 0 Putative zinc-finger zf-ribbon_3 PF13248.6 gi|118431618|ref|NP_148215.2| - 7.9 6.1 10.4 1.5 8.3 0.4 2.7 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.28 gi|14601675|ref|NP_148216.1| - 3.6e-125 418.1 0.0 5.2e-125 417.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|14601675|ref|NP_148216.1| - 3.7e-45 153.9 0.0 6e-45 153.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|14601675|ref|NP_148216.1| - 1.8e-31 108.3 0.5 5.8e-31 106.7 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 gi|14601675|ref|NP_148216.1| - 1.5e-29 103.0 0.0 2.3e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|14601675|ref|NP_148216.1| - 5.8e-26 90.5 0.0 1.3e-25 89.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|14601675|ref|NP_148216.1| - 1.6e-18 66.8 1.0 4.6e-18 65.3 0.1 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|14601675|ref|NP_148216.1| - 8.7e-07 29.4 0.1 2.1e-06 28.2 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.19 gi|14601676|ref|NP_148217.1| - 1.5e-28 98.5 0.1 1.8e-28 98.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain FAS_meander PF17951.1 gi|14601676|ref|NP_148217.1| - 0.028 14.2 0.0 4.5 7.1 0.0 2.0 2 0 0 2 2 2 0 Fatty acid synthase meander beta sheet domain Metallophos PF00149.28 gi|118431619|ref|NP_148218.2| - 4e-08 34.0 0.7 1.3e-06 29.1 0.0 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|118431619|ref|NP_148218.2| - 0.00012 22.3 0.0 0.00022 21.4 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TBP PF00352.21 gi|118431620|ref|NP_148219.2| - 1.8e-60 200.9 0.8 1.6e-31 108.1 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|118431620|ref|NP_148219.2| - 3.6e-08 33.4 0.0 0.0076 16.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Radical_SAM PF04055.21 gi|118431622|ref|NP_148221.2| - 1.8e-20 74.0 0.0 4.6e-20 72.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.12 gi|118431622|ref|NP_148221.2| - 0.00024 20.6 4.1 0.057 12.9 0.1 2.9 3 0 0 3 3 3 2 TFIIB zinc-binding Fer4_12 PF13353.6 gi|118431622|ref|NP_148221.2| - 0.0023 18.2 0.0 0.0047 17.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf_C2H2_10 PF18414.1 gi|118431622|ref|NP_148221.2| - 0.0031 17.0 2.2 1.5 8.4 0.3 2.4 2 0 0 2 2 2 2 C2H2 type zinc-finger zinc_ribbon_2 PF13240.6 gi|118431622|ref|NP_148221.2| - 0.0084 15.8 10.4 0.028 14.1 0.1 2.9 3 0 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|118431622|ref|NP_148221.2| - 0.015 15.2 0.4 0.054 13.4 0.4 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|118431622|ref|NP_148221.2| - 0.016 15.2 0.0 0.016 15.2 0.0 2.6 3 0 0 3 3 3 0 Double zinc ribbon DUF1610 PF07754.11 gi|118431622|ref|NP_148221.2| - 0.16 12.0 2.5 13 5.8 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_ligase_ZBD PF03119.16 gi|118431622|ref|NP_148221.2| - 0.21 11.7 5.2 0.36 10.9 0.8 3.0 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DpnI PF06044.12 gi|118431622|ref|NP_148221.2| - 0.24 11.0 0.7 2.3 7.8 0.1 2.3 2 0 0 2 2 2 0 Dam-replacing family IBR PF01485.21 gi|118431622|ref|NP_148221.2| - 0.24 11.6 0.1 0.24 11.6 0.1 1.9 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain zf-ribbon_3 PF13248.6 gi|118431622|ref|NP_148221.2| - 0.28 10.6 7.0 1.2 8.6 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|118431622|ref|NP_148221.2| - 0.29 11.2 9.5 0.84 9.7 0.4 3.1 2 1 1 3 3 3 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|118431622|ref|NP_148221.2| - 0.43 10.6 1.4 27 4.8 0.1 2.6 1 1 1 2 2 2 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|118431622|ref|NP_148221.2| - 0.86 9.6 6.7 1.7 8.6 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbons HypA PF01155.19 gi|118431622|ref|NP_148221.2| - 0.95 9.5 3.7 4.6 7.3 0.1 2.9 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|118431622|ref|NP_148221.2| - 3.3 7.5 8.4 15 5.3 0.1 3.4 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF2258 PF10015.9 gi|118431623|ref|NP_148222.2| - 2.8e-31 107.5 1.0 2.8e-31 107.5 1.0 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) MS_channel PF00924.18 gi|118431624|ref|NP_148223.2| - 7.2e-41 140.0 0.4 7.2e-41 140.0 0.4 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel PP_kinase_C PF13090.6 gi|118431624|ref|NP_148223.2| - 0.098 12.1 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 2 DUF1938 PF09153.10 gi|118431624|ref|NP_148223.2| - 0.11 12.6 0.1 0.74 9.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1938) Trep_Strep PF09605.10 gi|118431624|ref|NP_148223.2| - 0.15 12.0 8.2 0.19 11.7 7.3 1.6 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) FtsK_4TM PF13491.6 gi|118431624|ref|NP_148223.2| - 0.61 9.8 8.5 0.97 9.1 8.5 1.2 1 0 0 1 1 1 0 4TM region of DNA translocase FtsK/SpoIIIE DUF432 PF04254.13 gi|118431625|ref|NP_148224.2| - 8.5e-21 74.4 0.0 1.6e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF432) HMG-CoA_red PF00368.18 gi|14601684|ref|NP_148225.1| - 4.8e-132 440.4 0.1 5.5e-132 440.2 0.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF35_N PF12172.8 gi|118431626|ref|NP_148226.2| - 1.1e-12 47.6 5.9 1.9e-12 46.8 5.9 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|118431626|ref|NP_148226.2| - 6.8e-11 42.0 2.1 1e-10 41.5 2.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DZR PF12773.7 gi|118431626|ref|NP_148226.2| - 0.0018 18.3 0.2 0.0026 17.7 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|118431626|ref|NP_148226.2| - 0.0054 16.4 4.6 0.0089 15.7 4.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|118431626|ref|NP_148226.2| - 0.011 15.7 0.2 0.022 14.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|118431626|ref|NP_148226.2| - 0.033 13.6 5.0 0.064 12.7 5.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|118431626|ref|NP_148226.2| - 0.057 13.5 4.1 0.17 12.0 4.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain TackOD1 PF18551.1 gi|118431626|ref|NP_148226.2| - 0.17 11.6 0.1 0.24 11.1 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 CpXC PF14353.6 gi|118431626|ref|NP_148226.2| - 0.18 11.9 0.0 6.6 6.8 0.0 2.2 1 1 1 2 2 2 0 CpXC protein zf-C2H2 PF00096.26 gi|118431626|ref|NP_148226.2| - 0.19 12.2 2.8 1.3 9.6 0.4 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|118431626|ref|NP_148226.2| - 0.23 11.0 3.1 1.3 8.6 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding YhfH PF14149.6 gi|118431626|ref|NP_148226.2| - 0.28 11.2 1.3 3.2 7.8 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-C2HC_2 PF13913.6 gi|118431626|ref|NP_148226.2| - 2.8 7.9 4.5 34 4.5 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Thiolase_N PF00108.23 gi|118431627|ref|NP_148227.2| - 4.8e-10 39.2 1.0 5.9e-10 38.9 0.1 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|118431627|ref|NP_148227.2| - 0.00062 19.4 0.2 0.00062 19.4 0.2 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|118431627|ref|NP_148227.2| - 1.8 8.5 6.9 2.1 8.2 0.8 2.8 2 1 1 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|118431628|ref|NP_148228.2| - 1.1e-10 41.6 0.0 2.2e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|118431628|ref|NP_148228.2| - 0.00013 21.7 0.0 0.01 15.5 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|118431628|ref|NP_148228.2| - 0.00062 19.2 0.2 0.0017 17.8 0.5 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|118431628|ref|NP_148228.2| - 0.019 14.8 3.1 0.021 14.7 1.6 1.9 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Radical_SAM PF04055.21 gi|118431629|ref|NP_148229.2| - 5.3e-25 88.7 0.0 8.9e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1598 PF07643.11 gi|14601689|ref|NP_148230.1| - 0.063 13.5 0.0 0.31 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1598) Rhomboid PF01694.22 gi|118431630|ref|NP_148231.2| - 3e-38 131.2 18.6 3e-38 131.2 18.6 1.6 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|118431630|ref|NP_148231.2| - 0.0064 17.0 1.6 0.0071 16.9 0.2 1.9 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) UbiA PF01040.18 gi|14601691|ref|NP_148232.1| - 3.2e-46 157.7 24.2 4.2e-46 157.3 24.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family BNR_2 PF13088.6 gi|118431632|ref|NP_148235.2| - 1.5e-08 34.3 0.0 0.0005 19.4 0.0 3.2 1 1 1 3 3 3 2 BNR repeat-like domain Apolipoprotein PF01442.18 gi|118431632|ref|NP_148235.2| - 3.2e-05 23.9 0.4 0.00014 21.8 0.0 1.8 1 1 0 2 2 2 1 Apolipoprotein A1/A4/E domain BNR PF02012.20 gi|118431632|ref|NP_148235.2| - 0.00031 20.3 10.4 1.4 9.2 0.2 4.8 4 0 0 4 4 4 2 BNR/Asp-box repeat NPV_P10 PF05531.12 gi|118431632|ref|NP_148235.2| - 0.0005 20.5 0.7 0.0013 19.1 0.7 1.8 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|118431632|ref|NP_148235.2| - 0.0027 17.7 1.5 0.007 16.4 1.0 1.7 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus HOOK PF05622.12 gi|118431632|ref|NP_148235.2| - 0.013 13.7 1.3 0.018 13.2 1.3 1.0 1 0 0 1 1 1 0 HOOK protein DUF812 PF05667.11 gi|118431632|ref|NP_148235.2| - 0.02 13.8 0.3 0.028 13.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) TMPIT PF07851.13 gi|118431632|ref|NP_148235.2| - 0.034 13.4 0.2 0.062 12.5 0.2 1.3 1 0 0 1 1 1 0 TMPIT-like protein EzrA PF06160.12 gi|118431632|ref|NP_148235.2| - 0.035 12.3 0.8 0.05 11.8 0.8 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|118431632|ref|NP_148235.2| - 0.069 13.2 2.2 0.15 12.1 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) CCDC154 PF15450.6 gi|118431632|ref|NP_148235.2| - 0.075 11.6 0.4 0.1 11.1 0.4 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 154 SF-assemblin PF06705.11 gi|118431632|ref|NP_148235.2| - 0.11 11.9 1.7 0.35 10.2 1.4 1.8 1 1 1 2 2 2 0 SF-assemblin/beta giardin ApoLp-III PF07464.11 gi|118431632|ref|NP_148235.2| - 0.13 12.4 0.8 0.52 10.4 0.3 1.9 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF948 PF06103.11 gi|118431632|ref|NP_148235.2| - 0.19 12.0 0.4 21 5.4 0.1 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Filament PF00038.21 gi|118431632|ref|NP_148235.2| - 0.21 11.1 1.6 0.31 10.6 1.6 1.1 1 0 0 1 1 1 0 Intermediate filament protein GldM_N PF12081.8 gi|118431632|ref|NP_148235.2| - 0.23 11.5 0.9 0.38 10.8 0.9 1.3 1 0 0 1 1 1 0 GldM N-terminal domain SlyX PF04102.12 gi|118431632|ref|NP_148235.2| - 0.23 12.1 0.0 0.52 11.0 0.0 1.5 1 0 0 1 1 1 0 SlyX CorA PF01544.18 gi|118431632|ref|NP_148235.2| - 0.26 10.6 0.7 0.4 9.9 0.7 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Phasin PF05597.11 gi|118431632|ref|NP_148235.2| - 0.32 11.0 4.4 1.1 9.3 0.3 2.3 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PNP_UDP_1 PF01048.20 gi|14601697|ref|NP_148238.1| - 4.8e-48 163.5 0.0 5.4e-48 163.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NinB PF05772.12 gi|14601697|ref|NP_148238.1| - 0.16 11.8 0.0 0.55 10.1 0.0 1.7 1 1 1 2 2 2 0 NinB protein Phosphatase PF15698.5 gi|118431635|ref|NP_148240.2| - 0.0072 15.5 0.0 0.02 14.0 0.0 1.6 1 1 1 2 2 2 1 Phosphatase SIS_2 PF13580.6 gi|118431635|ref|NP_148240.2| - 0.08 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 SIS domain Methyltransf_11 PF08241.12 gi|14601700|ref|NP_148241.1| - 5.3e-11 43.0 0.0 1.2e-10 41.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|14601700|ref|NP_148241.1| - 1.5e-05 25.6 0.0 3.6e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|14601700|ref|NP_148241.1| - 0.00066 19.5 0.0 0.0021 17.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|14601700|ref|NP_148241.1| - 0.0071 17.1 0.0 4.8 8.0 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Ubie_methyltran PF01209.18 gi|14601700|ref|NP_148241.1| - 0.02 14.2 0.0 0.065 12.6 0.0 1.9 2 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family ABC_tran PF00005.27 gi|118431637|ref|NP_148242.2| - 5.1e-38 130.7 0.0 6.8e-38 130.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431637|ref|NP_148242.2| - 1.1e-10 41.8 0.1 5.9e-05 23.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431637|ref|NP_148242.2| - 2.6e-07 30.3 0.1 0.0044 16.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|118431637|ref|NP_148242.2| - 5.2e-06 26.1 0.0 9.5e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|118431637|ref|NP_148242.2| - 5.5e-06 26.9 0.1 9.8e-06 26.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|118431637|ref|NP_148242.2| - 0.00059 20.1 0.1 0.0021 18.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|118431637|ref|NP_148242.2| - 0.0011 18.9 0.1 0.0045 16.9 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase ABC_ATPase PF09818.9 gi|118431637|ref|NP_148242.2| - 0.0012 17.8 0.2 1.1 8.0 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|118431637|ref|NP_148242.2| - 0.003 17.3 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|118431637|ref|NP_148242.2| - 0.0031 17.9 0.0 0.019 15.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|118431637|ref|NP_148242.2| - 0.0037 17.5 0.4 0.044 14.0 0.5 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|118431637|ref|NP_148242.2| - 0.0053 16.5 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|118431637|ref|NP_148242.2| - 0.0057 16.4 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|118431637|ref|NP_148242.2| - 0.0059 16.0 0.0 0.016 14.6 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|118431637|ref|NP_148242.2| - 0.0075 16.8 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|118431637|ref|NP_148242.2| - 0.0075 16.2 0.0 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|118431637|ref|NP_148242.2| - 0.0083 16.3 0.3 0.058 13.6 0.3 2.0 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|118431637|ref|NP_148242.2| - 0.012 14.7 0.1 0.041 13.0 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_15 PF13175.6 gi|118431637|ref|NP_148242.2| - 0.015 15.0 0.0 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain G-alpha PF00503.20 gi|118431637|ref|NP_148242.2| - 0.065 12.4 0.0 0.093 11.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|118431637|ref|NP_148242.2| - 0.066 13.8 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|118431637|ref|NP_148242.2| - 0.068 11.9 0.0 0.095 11.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein ATPase_2 PF01637.18 gi|118431637|ref|NP_148242.2| - 0.075 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|118431637|ref|NP_148242.2| - 0.11 12.4 0.1 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|118431637|ref|NP_148242.2| - 0.11 12.8 0.1 0.25 11.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF815 PF05673.13 gi|118431637|ref|NP_148242.2| - 0.11 11.6 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|118431637|ref|NP_148242.2| - 0.14 12.5 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|118431637|ref|NP_148242.2| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|118431637|ref|NP_148242.2| - 0.17 11.5 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain BPD_transp_1 PF00528.22 gi|14601702|ref|NP_148243.1| - 1.1e-17 64.4 11.2 1.1e-17 64.4 11.2 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|118431638|ref|NP_148244.2| - 8.2e-52 175.9 0.2 9.8e-52 175.6 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|118431638|ref|NP_148244.2| - 5.7e-06 26.5 0.1 6.6e-05 23.1 0.1 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site YhfZ_C PF14503.6 gi|118431638|ref|NP_148244.2| - 0.0026 17.3 0.5 0.81 9.2 0.1 2.2 1 1 1 2 2 2 2 YhfZ C-terminal domain NMT1 PF09084.11 gi|118431638|ref|NP_148244.2| - 0.0034 17.4 1.5 0.39 10.6 0.1 2.2 1 1 0 2 2 2 2 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|118431638|ref|NP_148244.2| - 0.029 13.9 0.3 0.4 10.2 0.3 2.4 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF2613 PF11021.8 gi|118431638|ref|NP_148244.2| - 0.076 13.1 1.5 0.13 12.3 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) ACT_7 PF13840.6 gi|14601704|ref|NP_148245.1| - 7.6e-13 48.1 1.5 1.8e-09 37.3 0.2 2.6 2 0 0 2 2 2 2 ACT domain DUF2791 PF10923.8 gi|14601704|ref|NP_148245.1| - 0.002 17.0 0.1 0.0054 15.6 0.0 1.7 1 1 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) ACT PF01842.25 gi|14601704|ref|NP_148245.1| - 0.0022 17.7 4.0 0.021 14.6 0.1 3.3 3 1 0 3 3 3 1 ACT domain RNA_binding PF01877.17 gi|14601704|ref|NP_148245.1| - 0.0095 16.2 0.1 0.045 14.0 0.1 2.1 1 1 0 1 1 1 1 RNA binding DUF3509 PF12021.8 gi|14601704|ref|NP_148245.1| - 0.047 13.4 0.4 0.64 9.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) DUF4922 PF16269.5 gi|14601704|ref|NP_148245.1| - 0.093 12.5 0.1 9.1 6.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4922) T2SSF PF00482.23 gi|118431639|ref|NP_148246.2| - 3.9e-20 72.1 8.4 6.9e-12 45.4 0.1 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Trp_oprn_chp PF09534.10 gi|118431639|ref|NP_148246.2| - 0.047 13.5 4.0 0.11 12.3 2.6 2.4 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) T2SSE PF00437.20 gi|118431640|ref|NP_148247.2| - 2.1e-47 161.5 0.0 2.9e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|118431640|ref|NP_148247.2| - 2.6e-05 23.9 0.0 5.1e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|118431640|ref|NP_148247.2| - 0.0011 19.5 0.0 0.0047 17.4 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.6 gi|118431640|ref|NP_148247.2| - 0.065 13.5 0.0 0.19 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|118431640|ref|NP_148247.2| - 0.075 13.5 0.2 0.18 12.3 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|118431640|ref|NP_148247.2| - 0.094 12.4 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain DEAD PF00270.29 gi|118431640|ref|NP_148247.2| - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase ATPase PF06745.13 gi|14601707|ref|NP_148248.1| - 1.4e-14 54.0 0.0 1.7e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|14601707|ref|NP_148248.1| - 0.00094 18.5 0.0 0.0014 17.9 0.0 1.3 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.6 gi|14601707|ref|NP_148248.1| - 0.0012 19.1 0.2 0.0037 17.5 0.2 1.7 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.12 gi|14601707|ref|NP_148248.1| - 0.0026 17.5 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_18 PF13238.6 gi|14601707|ref|NP_148248.1| - 0.0038 17.8 0.1 0.0078 16.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|14601707|ref|NP_148248.1| - 0.004 17.6 0.2 0.0085 16.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain PAXNEB PF05625.11 gi|14601707|ref|NP_148248.1| - 0.004 16.3 0.3 0.23 10.6 0.1 2.0 2 0 0 2 2 2 1 PAXNEB protein RecA PF00154.21 gi|14601707|ref|NP_148248.1| - 0.0094 15.4 0.1 0.017 14.6 0.1 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|14601707|ref|NP_148248.1| - 0.023 14.4 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|14601707|ref|NP_148248.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Arch_flagellin PF01917.16 gi|14601709|ref|NP_148250.1| - 1.2e-20 74.4 0.4 1.4e-20 74.1 0.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin SinI PF08671.10 gi|118431641|ref|YP_874917.1| - 0.00096 18.9 0.5 0.0058 16.4 0.0 2.1 2 0 0 2 2 2 1 Anti-repressor SinI DUF3420 PF11900.8 gi|118431641|ref|YP_874917.1| - 0.047 13.8 0.1 0.14 12.3 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3420) Arch_flagellin PF01917.16 gi|14601712|ref|NP_148253.1| - 5.6e-37 127.5 0.9 6.4e-37 127.3 0.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|14601713|ref|NP_148254.1| - 5.3e-30 104.8 0.2 6.6e-30 104.5 0.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin CcmE PF03100.15 gi|14601713|ref|NP_148254.1| - 0.038 14.0 0.3 0.061 13.3 0.3 1.2 1 0 0 1 1 1 0 CcmE ABC_tran PF00005.27 gi|118431644|ref|NP_148257.2| - 3.8e-25 89.0 0.0 5.3e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431644|ref|NP_148257.2| - 2.2e-10 40.8 0.5 0.00036 20.4 0.4 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|118431644|ref|NP_148257.2| - 0.00021 20.4 0.2 0.00033 19.7 0.2 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|118431644|ref|NP_148257.2| - 0.00064 20.0 0.0 0.0018 18.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431644|ref|NP_148257.2| - 0.0082 16.5 1.2 0.019 15.3 1.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|118431644|ref|NP_148257.2| - 0.015 15.5 0.1 0.12 12.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|118431644|ref|NP_148257.2| - 0.016 14.9 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|118431644|ref|NP_148257.2| - 0.02 14.6 0.0 0.052 13.3 0.0 1.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|118431644|ref|NP_148257.2| - 0.024 15.1 0.0 0.035 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|118431644|ref|NP_148257.2| - 0.025 14.2 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|118431644|ref|NP_148257.2| - 0.051 13.2 0.1 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|118431644|ref|NP_148257.2| - 0.074 12.6 0.3 0.11 12.0 0.3 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 gi|118431644|ref|NP_148257.2| - 0.2 11.1 0.0 2 7.8 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MFS_1 PF07690.16 gi|118431645|ref|NP_148258.2| - 2.4e-23 82.7 59.3 2.7e-19 69.3 45.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|118431645|ref|NP_148258.2| - 1.4e-06 27.4 18.0 5.9e-05 22.1 6.0 2.3 2 0 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|118431645|ref|NP_148258.2| - 4.7e-05 22.0 27.2 0.026 12.9 0.2 3.2 3 0 0 3 3 3 3 Transmembrane secretion effector Sugar_tr PF00083.24 gi|118431645|ref|NP_148258.2| - 0.0034 16.3 0.8 0.0034 16.3 0.8 3.2 1 1 2 3 3 3 1 Sugar (and other) transporter LacY_symp PF01306.19 gi|118431645|ref|NP_148258.2| - 0.0056 15.5 0.7 0.031 13.1 0.0 2.1 2 1 1 3 3 3 2 LacY proton/sugar symporter Peptidase_M20 PF01546.28 gi|14601719|ref|NP_148260.1| - 2.2e-32 112.5 0.0 3.1e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|14601719|ref|NP_148260.1| - 0.044 13.5 0.0 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Peptidase family M28 LAGLIDADG_1 PF00961.19 gi|118431646|ref|YP_874918.1| - 1.8e-08 35.3 0.0 3.9e-08 34.2 0.0 1.5 2 0 0 2 2 2 1 LAGLIDADG endonuclease Flagellar_rod PF05149.12 gi|118431646|ref|YP_874918.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Paraflagellar rod protein LAGLIDADG_3 PF14528.6 gi|118431647|ref|NP_148261.2| - 2.3e-12 47.0 2.1 2.1e-09 37.6 0.0 2.2 2 0 0 2 2 2 2 LAGLIDADG-like domain SPOR PF05036.13 gi|118431647|ref|NP_148261.2| - 0.1 13.0 0.6 3.6 8.0 0.2 2.4 2 0 0 2 2 2 0 Sporulation related domain Sld7_C PF18596.1 gi|118431647|ref|NP_148261.2| - 0.13 12.4 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Sld7 C-terminal domain LAGLIDADG_1 PF00961.19 gi|118431647|ref|NP_148261.2| - 0.14 13.2 1.3 36 5.4 0.0 3.0 2 1 1 3 3 3 0 LAGLIDADG endonuclease SNARE_assoc PF09335.11 gi|14601723|ref|NP_148264.1| - 4.1e-06 27.3 8.8 4.1e-06 27.3 8.8 2.3 2 1 0 2 2 2 1 SNARE associated Golgi protein Phage_holin_5_1 PF06946.11 gi|14601723|ref|NP_148264.1| - 0.78 10.2 4.4 1.8 9.0 0.2 2.4 2 0 0 2 2 2 0 Bacteriophage A118-like holin, Hol118 DUF2070 PF09843.9 gi|14601723|ref|NP_148264.1| - 1.7 6.8 11.2 2.1 6.5 11.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane_3 PF12698.7 gi|118431648|ref|NP_148265.2| - 1.4e-19 70.4 12.8 3.1e-19 69.3 12.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|118431648|ref|NP_148265.2| - 7.1e-19 68.2 12.7 1.2e-18 67.4 12.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|118431648|ref|NP_148265.2| - 3.2e-10 39.8 11.5 3.2e-10 39.8 11.5 2.2 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|118431648|ref|NP_148265.2| - 0.013 15.5 6.0 0.013 15.5 6.0 2.6 2 1 1 3 3 3 0 ABC-2 family transporter protein DUF1182 PF06681.13 gi|118431648|ref|NP_148265.2| - 0.08 12.5 3.5 0.15 11.7 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1182) ABC_tran PF00005.27 gi|118431649|ref|NP_148266.2| - 1.3e-22 80.8 0.0 1.8e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431649|ref|NP_148266.2| - 5.9e-13 49.3 0.0 2.7e-08 34.0 0.0 2.0 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|118431649|ref|NP_148266.2| - 0.0012 18.6 0.0 0.0021 17.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|118431649|ref|NP_148266.2| - 0.016 13.9 0.0 1.7 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|118431649|ref|NP_148266.2| - 0.042 13.3 0.0 3 7.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|118431649|ref|NP_148266.2| - 0.046 13.3 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|118431649|ref|NP_148266.2| - 0.11 12.1 0.0 1.2 8.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|118431649|ref|NP_148266.2| - 0.13 11.9 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain PPS_PS PF02006.16 gi|118431651|ref|NP_148267.2| - 1.5e-66 223.3 0.0 1.8e-66 223.1 0.0 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase GHMP_kinases_N PF00288.26 gi|118431652|ref|NP_148268.2| - 0.15 12.3 5.6 0.57 10.5 5.2 2.2 1 1 1 2 2 2 0 GHMP kinases N terminal domain SIS PF01380.22 gi|118431653|ref|NP_148269.2| - 2.5e-18 66.2 0.0 4.4e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|118431653|ref|NP_148269.2| - 8.7e-10 38.8 1.5 3.1e-07 30.5 0.7 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|118431653|ref|NP_148269.2| - 0.24 11.2 3.0 4.2 7.2 0.2 2.2 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase NTP_transf_2 PF01909.23 gi|118431654|ref|NP_148272.2| - 0.00062 20.0 0.0 0.0011 19.2 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Spc7_N PF15402.6 gi|14601736|ref|NP_148277.1| - 0.0099 14.2 1.3 0.0097 14.2 1.3 1.0 1 0 0 1 1 1 1 N-terminus of kinetochore NMS complex subunit Spc7 SelP_N PF04592.14 gi|14601736|ref|NP_148277.1| - 0.24 10.8 11.6 0.33 10.3 11.6 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region FAM76 PF16046.5 gi|14601736|ref|NP_148277.1| - 0.99 8.7 4.4 1.1 8.6 4.4 1.1 1 0 0 1 1 1 0 FAM76 protein zf-ZPR1 PF03367.13 gi|118431656|ref|NP_148278.2| - 1e-33 116.5 0.0 1.5e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.10 gi|118431656|ref|NP_148278.2| - 0.0069 16.5 0.8 1 9.5 0.1 2.8 3 0 0 3 3 3 1 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|118431656|ref|NP_148278.2| - 0.038 14.4 1.5 0.076 13.4 0.1 2.1 3 0 0 3 3 3 0 Restriction alleviation protein Lar UPF0547 PF10571.9 gi|118431656|ref|NP_148278.2| - 0.047 13.8 0.9 1.5 9.0 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|118431656|ref|NP_148278.2| - 0.066 13.3 1.0 0.1 12.7 0.1 1.7 2 0 0 2 2 2 0 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|118431656|ref|NP_148278.2| - 0.068 12.9 2.0 1.9 8.3 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain REV1_C PF16727.5 gi|118431656|ref|NP_148278.2| - 0.15 12.5 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA repair protein REV1 C-terminal domain zf-ribbon_3 PF13248.6 gi|118431656|ref|NP_148278.2| - 0.19 11.2 4.3 1.4 8.4 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain eIF-3_zeta PF05091.12 gi|118431656|ref|NP_148278.2| - 0.28 10.1 0.1 0.36 9.7 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) DNA_RNApol_7kD PF03604.13 gi|118431656|ref|NP_148278.2| - 0.36 10.5 5.2 3.3 7.5 0.3 2.8 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|118431656|ref|NP_148278.2| - 0.76 9.8 3.2 20 5.3 3.4 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain ArsA_HSP20 PF17886.1 gi|118431657|ref|NP_148279.2| - 2e-12 46.5 0.0 2.9e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|118431657|ref|NP_148279.2| - 1.3e-10 41.4 2.8 4.7e-09 36.3 2.8 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|118431657|ref|NP_148279.2| - 9.3e-06 26.6 0.8 1.4e-05 26.0 0.8 1.2 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|118431657|ref|NP_148279.2| - 0.003 17.9 0.1 0.0046 17.3 0.1 1.3 1 0 0 1 1 1 1 PIH1 CS-like domain bZIP_1 PF00170.21 gi|118431657|ref|NP_148279.2| - 0.021 14.9 0.2 0.06 13.4 0.2 1.7 1 0 0 1 1 1 0 bZIP transcription factor DPCD PF14913.6 gi|118431657|ref|NP_148279.2| - 0.025 13.9 0.1 0.025 13.9 0.1 1.4 2 0 0 2 2 2 0 DPCD protein family GvpH PF05455.11 gi|118431657|ref|NP_148279.2| - 0.027 14.6 0.0 0.032 14.3 0.0 1.3 1 1 0 1 1 1 0 GvpH HlyD_3 PF13437.6 gi|118431657|ref|NP_148279.2| - 0.041 14.6 0.3 0.062 14.0 0.3 1.3 1 0 0 1 1 1 0 HlyD family secretion protein DUF3014 PF11219.8 gi|118431657|ref|NP_148279.2| - 0.053 13.8 0.3 0.11 12.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3014) Cep57_MT_bd PF06657.13 gi|118431657|ref|NP_148279.2| - 0.059 13.8 0.4 0.75 10.3 0.1 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DAO PF01266.24 gi|118431658|ref|NP_148281.2| - 3.2e-08 33.6 1.8 3.3e-05 23.7 0.0 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|118431658|ref|NP_148281.2| - 2.6e-06 26.9 0.1 0.0066 15.7 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_binding_2 PF00890.24 gi|118431658|ref|NP_148281.2| - 5.6e-05 22.4 0.1 0.22 10.6 0.0 2.7 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|118431658|ref|NP_148281.2| - 0.0023 17.2 0.0 0.0053 16.0 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|118431658|ref|NP_148281.2| - 0.0024 16.8 0.0 0.073 11.9 0.0 2.4 2 1 0 2 2 2 1 Tryptophan halogenase Thi4 PF01946.17 gi|118431658|ref|NP_148281.2| - 0.0038 16.5 0.5 0.035 13.3 0.2 2.4 2 1 1 3 3 3 1 Thi4 family Lycopene_cycl PF05834.12 gi|118431658|ref|NP_148281.2| - 0.032 13.3 0.7 0.081 12.0 0.2 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|118431658|ref|NP_148281.2| - 0.04 14.1 0.3 0.26 11.6 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|118431658|ref|NP_148281.2| - 0.069 12.2 0.0 0.11 11.6 0.0 1.3 1 1 0 1 1 1 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|118431658|ref|NP_148281.2| - 0.1 11.9 0.5 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Acetyltransf_1 PF00583.25 gi|14601741|ref|NP_148282.1| - 4.1e-21 75.4 0.0 6.3e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|14601741|ref|NP_148282.1| - 1.3e-13 51.2 0.1 1.3e-12 47.9 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|14601741|ref|NP_148282.1| - 1.4e-11 44.2 0.0 2.4e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|14601741|ref|NP_148282.1| - 4.5e-11 42.8 0.0 1e-08 35.1 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|14601741|ref|NP_148282.1| - 1e-08 35.0 0.1 2.4e-08 33.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|14601741|ref|NP_148282.1| - 6.5e-07 29.6 0.0 9.2e-05 22.6 0.0 2.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|14601741|ref|NP_148282.1| - 1.1e-05 25.5 0.1 0.00015 21.9 0.1 2.3 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|14601741|ref|NP_148282.1| - 5.9e-05 22.6 0.0 7.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|14601741|ref|NP_148282.1| - 0.00034 21.3 0.0 0.00054 20.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|14601741|ref|NP_148282.1| - 0.0088 15.8 0.1 0.012 15.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|14601741|ref|NP_148282.1| - 0.027 14.6 0.0 0.063 13.4 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HTH_52 PF18576.1 gi|14601743|ref|NP_148284.1| - 0.22 11.7 1.9 3.5 7.9 0.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain zf-C2H2_4 PF13894.6 gi|118431660|ref|NP_148286.2| - 0.00028 21.5 0.0 0.00042 20.9 0.0 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|118431660|ref|NP_148286.2| - 0.0014 19.0 0.0 0.002 18.5 0.0 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.8 gi|118431660|ref|NP_148286.2| - 0.0099 16.1 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding Zn-C2H2_12 PF18112.1 gi|118431660|ref|NP_148286.2| - 0.035 14.6 0.1 0.057 13.9 0.1 1.4 1 0 0 1 1 1 0 Autophagy receptor zinc finger-C2H2 domain NAD_synthase PF02540.17 gi|118431661|ref|NP_148287.2| - 6e-74 248.2 0.0 7e-74 248.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|118431661|ref|NP_148287.2| - 0.00091 18.1 0.0 0.016 14.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|118431661|ref|NP_148287.2| - 0.0031 17.1 0.0 0.018 14.5 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|118431661|ref|NP_148287.2| - 0.053 13.2 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DFP PF04127.15 gi|118431662|ref|NP_148288.2| - 3.7e-49 167.1 0.0 1.3e-47 162.1 0.0 2.3 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|118431662|ref|NP_148288.2| - 1.3e-33 116.0 0.7 6.7e-33 113.7 0.2 2.0 2 0 0 2 2 2 1 Flavoprotein YjeF_N PF03853.15 gi|118431662|ref|NP_148288.2| - 0.027 14.4 0.0 6.1 6.7 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus Aldo_ket_red PF00248.21 gi|14601748|ref|NP_148289.1| - 1.1e-55 188.9 0.0 1.6e-53 181.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Peripla_BP_6 PF13458.6 gi|14601748|ref|NP_148289.1| - 0.053 13.2 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein SHMT PF00464.19 gi|118431663|ref|NP_148290.2| - 3.6e-65 220.1 0.0 5.4e-65 219.5 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|118431663|ref|NP_148290.2| - 1e-07 31.5 0.0 4.8e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|118431663|ref|NP_148290.2| - 1.6e-07 30.9 0.0 4e-07 29.6 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|118431663|ref|NP_148290.2| - 0.00093 18.6 0.1 0.0018 17.7 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family EcoEI_R_C PF08463.10 gi|118431663|ref|NP_148290.2| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 EcoEI R protein C-terminal Fe-ADH PF00465.19 gi|118431664|ref|NP_148291.2| - 3.3e-100 335.4 0.8 3.7e-100 335.3 0.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|118431664|ref|NP_148291.2| - 2e-24 86.7 4.5 5.7e-14 52.4 1.8 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|118431664|ref|NP_148291.2| - 0.0025 17.0 3.5 0.48 9.5 0.3 2.5 2 1 0 2 2 2 2 3-dehydroquinate synthase SCP2 PF02036.17 gi|118431665|ref|NP_148292.2| - 2.8e-18 66.3 0.0 3.3e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Baculo_gp41 PF04700.12 gi|118431666|ref|NP_148293.2| - 0.18 11.5 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 Structural glycoprotein p40/gp41 conserved region Peptidase_M50 PF02163.22 gi|118431667|ref|NP_148295.2| - 1.6e-11 44.0 9.3 1e-05 24.9 0.1 2.5 1 1 1 2 2 2 2 Peptidase family M50 AA_kinase PF00696.28 gi|14601755|ref|NP_148296.1| - 4.2e-27 95.3 0.0 5.7e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family cobW PF02492.19 gi|118431668|ref|NP_148297.2| - 6.1e-06 25.9 0.0 2.4e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|118431668|ref|NP_148297.2| - 0.00016 21.8 0.1 0.001 19.2 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|118431668|ref|NP_148297.2| - 0.012 15.4 0.5 0.075 12.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|118431668|ref|NP_148297.2| - 0.027 14.2 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain ParA PF10609.9 gi|118431668|ref|NP_148297.2| - 0.043 13.3 0.3 0.085 12.3 0.3 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 gi|118431668|ref|NP_148297.2| - 0.11 11.8 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.18 gi|118431668|ref|NP_148297.2| - 0.13 12.0 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_31 PF13614.6 gi|118431668|ref|NP_148297.2| - 0.17 11.7 0.0 0.42 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain SAM_KSR1 PF13543.6 gi|118431670|ref|NP_148299.2| - 0.08 13.1 0.2 0.11 12.6 0.2 1.2 1 0 0 1 1 1 0 SAM like domain present in kinase suppressor RAS 1 SpoIIID PF12116.8 gi|118431670|ref|NP_148299.2| - 0.082 13.0 0.0 0.55 10.4 0.0 2.3 2 0 0 2 2 2 0 Stage III sporulation protein D tRNA-synt_2b PF00587.25 gi|118431671|ref|NP_148300.2| - 8.8e-35 120.3 0.0 1.5e-34 119.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|118431671|ref|NP_148300.2| - 3.6e-20 72.2 5.4 7.9e-20 71.1 5.4 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|118431671|ref|NP_148300.2| - 0.021 15.3 4.8 0.044 14.3 4.8 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region DivIC PF04977.15 gi|118431671|ref|NP_148300.2| - 0.71 9.7 6.1 42 4.0 0.0 3.5 3 0 0 3 3 3 0 Septum formation initiator Get5_C PF18514.1 gi|118431672|ref|NP_148301.2| - 0.014 15.1 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 Get5 C-terminal domain FeS_assembly_P PF01883.19 gi|118431673|ref|NP_148302.2| - 3.6e-21 75.1 1.2 5.3e-21 74.6 1.2 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|118431673|ref|NP_148302.2| - 0.014 15.5 0.1 0.031 14.4 0.0 1.5 2 0 0 2 2 2 0 NifU-like domain DUF202 PF02656.15 gi|118431674|ref|YP_874920.1| - 1.4 9.4 5.6 2 8.9 5.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.8 gi|118431674|ref|YP_874920.1| - 2.2 8.6 8.4 2.7 8.3 8.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) MoCF_biosynth PF00994.24 gi|118431675|ref|NP_148303.2| - 4.4e-37 126.9 0.0 5.8e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|118431675|ref|NP_148303.2| - 0.044 14.0 0.6 0.23 11.7 0.6 2.1 1 1 0 1 1 1 0 Damage-inducible protein CinA KH domain Arm-DNA-bind_3 PF13356.6 gi|118431675|ref|NP_148303.2| - 0.055 13.9 0.1 0.11 12.9 0.1 1.5 1 0 0 1 1 1 0 Arm DNA-binding domain LDcluster4 PF18306.1 gi|118431675|ref|NP_148303.2| - 0.062 12.9 0.1 0.14 11.7 0.1 1.6 2 0 0 2 2 2 0 SLOG cluster4 family FR47 PF08445.10 gi|118431676|ref|NP_148306.2| - 1.5e-09 37.6 0.1 2.5e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|118431676|ref|NP_148306.2| - 4.9e-09 36.5 0.7 8.8e-09 35.6 0.7 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|118431676|ref|NP_148306.2| - 2.4e-07 31.1 1.1 3.3e-07 30.6 0.5 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|118431676|ref|NP_148306.2| - 2.5e-05 24.2 0.1 3.7e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|118431676|ref|NP_148306.2| - 0.0031 18.2 0.2 0.0071 17.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|118431676|ref|NP_148306.2| - 0.02 15.0 0.1 0.055 13.6 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Mrr_cat PF04471.12 gi|118431678|ref|NP_148307.2| - 0.054 13.5 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease CTP_transf_like PF01467.26 gi|118431679|ref|NP_148308.2| - 2e-10 41.0 0.0 2.3e-10 40.8 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like eRF1_2 PF03464.15 gi|118431680|ref|NP_148309.2| - 4.7e-45 153.2 0.3 8e-45 152.4 0.3 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|118431680|ref|NP_148309.2| - 2.9e-24 85.7 2.7 2.5e-23 82.7 0.5 3.0 3 1 0 3 3 3 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|118431680|ref|NP_148309.2| - 1.2e-17 64.4 0.0 5.7e-17 62.2 0.0 2.1 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|118431680|ref|NP_148309.2| - 1.9e-10 41.1 0.0 7.3e-10 39.2 0.0 1.9 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 SpoU_sub_bind PF08032.12 gi|118431680|ref|NP_148309.2| - 3.3e-05 24.1 0.1 0.00083 19.6 0.1 2.7 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding eRF1_1 PF03463.15 gi|118431680|ref|NP_148309.2| - 0.0011 19.0 0.0 0.002 18.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 Clr5 PF14420.6 gi|118431680|ref|NP_148309.2| - 0.059 13.6 0.0 0.17 12.1 0.0 1.9 1 0 0 1 1 1 0 Clr5 domain ATP-synt_F PF01990.17 gi|118431680|ref|NP_148309.2| - 0.078 13.3 0.1 14 6.1 0.0 2.6 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit Thioredoxin_3 PF13192.6 gi|14601769|ref|NP_148310.1| - 0.00024 21.1 0.2 0.00035 20.5 0.2 1.2 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.11 gi|14601769|ref|NP_148310.1| - 0.029 14.7 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD PEP-utilizers PF00391.23 gi|14601769|ref|NP_148310.1| - 0.066 12.9 0.1 0.24 11.1 0.0 1.8 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain OTCace PF00185.24 gi|118431681|ref|NP_148311.2| - 3.9e-57 192.7 0.0 8.7e-57 191.6 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|118431681|ref|NP_148311.2| - 8.1e-48 162.2 0.0 1.4e-47 161.5 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HTH_45 PF14947.6 gi|118431682|ref|NP_148312.2| - 0.015 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.10 gi|118431682|ref|NP_148312.2| - 0.02 14.7 1.8 0.052 13.4 1.8 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HemN_C PF06969.16 gi|118431682|ref|NP_148312.2| - 0.021 14.9 0.5 0.032 14.3 0.5 1.3 1 0 0 1 1 1 0 HemN C-terminal domain Topoisom_bac PF01131.20 gi|118431682|ref|NP_148312.2| - 0.19 10.7 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_45 PF14947.6 gi|118431683|ref|NP_148313.2| - 0.0033 17.4 0.2 0.048 13.7 0.0 2.9 3 1 1 4 4 4 1 Winged helix-turn-helix TrmB PF01978.19 gi|118431683|ref|NP_148313.2| - 0.0098 15.8 0.2 1.6 8.7 0.0 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|118431683|ref|NP_148313.2| - 0.014 15.3 0.0 0.077 12.9 0.0 2.2 2 0 0 2 2 2 0 MarR family KorB PF08535.10 gi|118431683|ref|NP_148313.2| - 0.025 14.6 0.0 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 KorB domain DUF4096 PF13340.6 gi|118431683|ref|NP_148313.2| - 0.056 13.7 0.1 0.23 11.7 0.1 2.0 2 0 0 2 2 2 0 Putative transposase of IS4/5 family (DUF4096) Med31 PF05669.12 gi|118431683|ref|NP_148313.2| - 0.082 12.9 0.3 0.24 11.4 0.3 1.7 1 0 0 1 1 1 0 SOH1 HTH_Crp_2 PF13545.6 gi|118431683|ref|NP_148313.2| - 0.094 12.7 0.1 0.4 10.7 0.0 2.1 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain GAD-like PF08887.11 gi|118431683|ref|NP_148313.2| - 0.14 11.9 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 GAD-like domain Nre_N PF04894.12 gi|14601773|ref|NP_148314.1| - 2.6e-91 306.2 0.0 3.2e-91 305.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|14601773|ref|NP_148314.1| - 7.5e-24 83.8 0.0 1.4e-23 82.9 0.0 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HrpE PF06188.12 gi|14601773|ref|NP_148314.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E TrkA_C PF02080.21 gi|14601774|ref|NP_148315.1| - 2.3e-10 40.1 1.0 8.7e-05 22.3 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|14601774|ref|NP_148315.1| - 9.1e-06 26.0 1.5 0.03 14.8 0.1 2.4 2 0 0 2 2 2 2 PhoU domain DUF2122 PF09895.9 gi|118431684|ref|NP_148317.2| - 2.6e-32 111.4 0.0 3.4e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_methylase PF00145.17 gi|14601777|ref|NP_148318.1| - 8.9e-44 150.2 0.0 4.5e-28 98.6 0.0 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|14601777|ref|NP_148318.1| - 0.23 11.0 0.0 0.4 10.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TF_Zn_Ribbon PF08271.12 gi|118431685|ref|NP_148319.2| - 6.7e-09 35.1 0.9 1.2e-08 34.3 0.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIE_alpha PF02002.17 gi|118431685|ref|NP_148319.2| - 1.2e-08 34.8 0.0 2.2e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit zf_UBZ PF18439.1 gi|118431685|ref|NP_148319.2| - 2.6e-05 23.7 1.9 0.12 11.9 0.2 2.3 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|118431685|ref|NP_148319.2| - 0.00017 20.9 0.3 0.51 9.8 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|118431685|ref|NP_148319.2| - 0.00091 19.1 2.3 0.0045 16.9 2.3 2.0 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|118431685|ref|NP_148319.2| - 0.0014 18.6 0.0 0.011 15.7 0.1 1.9 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|118431685|ref|NP_148319.2| - 0.0046 16.8 0.8 2.2 8.2 0.1 2.4 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.6 gi|118431685|ref|NP_148319.2| - 0.0098 16.0 2.8 0.55 10.4 2.1 2.5 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.16 gi|118431685|ref|NP_148319.2| - 0.01 15.8 1.0 5.3 7.1 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1451 PF07295.11 gi|118431685|ref|NP_148319.2| - 0.012 15.7 0.0 0.029 14.4 0.0 1.7 1 1 0 1 1 1 0 Zinc-ribbon containing domain zf_C2H2_10 PF18414.1 gi|118431685|ref|NP_148319.2| - 0.014 14.9 2.2 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-Di19 PF05605.12 gi|118431685|ref|NP_148319.2| - 0.014 15.7 0.2 5.7 7.3 0.0 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding OrfB_Zn_ribbon PF07282.11 gi|118431685|ref|NP_148319.2| - 0.02 14.8 2.0 0.074 13.0 2.0 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|118431685|ref|NP_148319.2| - 0.025 14.6 2.3 0.089 12.8 2.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon YhfH PF14149.6 gi|118431685|ref|NP_148319.2| - 0.039 13.9 0.3 2.1 8.4 0.1 2.4 2 0 0 2 2 2 0 YhfH-like protein zinc-ribbons_6 PF07191.12 gi|118431685|ref|NP_148319.2| - 0.045 13.7 0.1 0.078 13.0 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-HIT PF04438.16 gi|118431685|ref|NP_148319.2| - 0.047 13.6 5.6 0.91 9.4 2.6 2.2 2 0 0 2 2 2 0 HIT zinc finger Rrf2 PF02082.20 gi|118431685|ref|NP_148319.2| - 0.049 14.0 0.0 0.16 12.3 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator Nop10p PF04135.12 gi|118431685|ref|NP_148319.2| - 0.051 13.6 0.5 0.35 11.0 0.5 2.2 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family RNA_POL_M_15KD PF02150.16 gi|118431685|ref|NP_148319.2| - 0.056 13.3 0.7 8.7 6.3 0.2 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS91 PF14319.6 gi|118431685|ref|NP_148319.2| - 0.059 13.4 0.0 0.09 12.8 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_9 PF14369.6 gi|118431685|ref|NP_148319.2| - 0.061 13.6 0.7 5.1 7.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon zf-ISL3 PF14690.6 gi|118431685|ref|NP_148319.2| - 0.064 13.9 0.9 15 6.3 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|118431685|ref|NP_148319.2| - 0.066 13.0 5.0 0.4 10.5 4.6 2.1 1 1 2 3 3 3 0 zinc-ribbon domain Mut7-C PF01927.16 gi|118431685|ref|NP_148319.2| - 0.077 13.1 0.6 3.9 7.6 0.0 2.6 1 1 2 3 3 3 0 Mut7-C RNAse domain zf-NADH-PPase PF09297.11 gi|118431685|ref|NP_148319.2| - 0.094 12.4 1.3 6.6 6.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|118431685|ref|NP_148319.2| - 0.096 12.0 1.4 3.2 7.2 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-CSL PF05207.13 gi|118431685|ref|NP_148319.2| - 0.11 12.3 0.4 0.11 12.3 0.4 2.2 1 1 1 2 2 2 0 CSL zinc finger Zn-ribbon_8 PF09723.10 gi|118431685|ref|NP_148319.2| - 0.17 12.0 4.2 1.7 8.8 4.1 2.2 1 1 2 3 3 3 0 Zinc ribbon domain DUF1610 PF07754.11 gi|118431685|ref|NP_148319.2| - 0.23 11.4 5.6 1.4 9.0 0.3 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) Mu-like_Com PF10122.9 gi|118431685|ref|NP_148319.2| - 0.27 10.7 5.4 1.2 8.6 0.2 2.4 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1595 PF12760.7 gi|118431685|ref|NP_148319.2| - 0.28 11.2 5.7 4.5 7.3 0.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|118431685|ref|NP_148319.2| - 0.32 11.1 4.9 3.7 7.7 0.1 2.7 3 0 0 3 3 2 0 Acetyl-coA carboxylase zinc finger domain CpXC PF14353.6 gi|118431685|ref|NP_148319.2| - 0.37 10.9 2.9 8.2 6.5 0.1 2.5 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_10 PF10058.9 gi|118431685|ref|NP_148319.2| - 0.42 10.4 1.8 17 5.2 0.1 2.3 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Elf1 PF05129.13 gi|118431685|ref|NP_148319.2| - 0.44 10.6 2.0 7.1 6.8 0.1 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DUF983 PF06170.12 gi|118431685|ref|NP_148319.2| - 0.52 10.8 1.8 11 6.5 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF983) TFIIS_C PF01096.18 gi|118431685|ref|NP_148319.2| - 0.56 10.1 5.2 6.8 6.6 0.5 2.3 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_SprT PF17283.2 gi|118431685|ref|NP_148319.2| - 0.58 10.1 5.4 10 6.1 5.4 2.3 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Trm56 PF01994.16 gi|118431686|ref|NP_148320.2| - 4.1e-44 149.3 0.0 5.1e-44 149.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 MMR_HSR1 PF01926.23 gi|14601780|ref|NP_148321.1| - 1.2e-16 60.7 0.0 2.7e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|14601780|ref|NP_148321.1| - 2.1e-13 50.6 1.6 4.4e-13 49.6 1.6 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|14601780|ref|NP_148321.1| - 9.3e-12 45.5 0.0 2.5e-11 44.1 0.0 1.8 2 0 0 2 2 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|14601780|ref|NP_148321.1| - 2.6e-08 33.6 0.0 5.2e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|14601780|ref|NP_148321.1| - 0.00012 21.7 0.0 0.0034 16.9 0.0 2.7 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|14601780|ref|NP_148321.1| - 0.0014 18.7 0.0 0.011 15.8 0.0 2.1 2 0 0 2 2 2 1 Dynamin family Arf PF00025.21 gi|14601780|ref|NP_148321.1| - 0.002 17.6 0.0 0.046 13.2 0.0 2.4 2 1 0 2 2 2 1 ADP-ribosylation factor family SRPRB PF09439.10 gi|14601780|ref|NP_148321.1| - 0.0022 17.5 0.0 0.009 15.5 0.0 1.9 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|14601780|ref|NP_148321.1| - 0.0084 16.1 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|14601780|ref|NP_148321.1| - 0.052 13.4 0.0 3.1 7.7 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Roc PF08477.13 gi|14601780|ref|NP_148321.1| - 0.092 13.0 0.0 1.1 9.5 0.0 2.1 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 gi|14601780|ref|NP_148321.1| - 0.093 13.2 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|14601780|ref|NP_148321.1| - 0.13 11.8 0.1 5.7 6.5 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|14601780|ref|NP_148321.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|118431687|ref|NP_148322.2| - 4.2e-12 45.9 1.0 6.4e-12 45.4 1.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|118431687|ref|NP_148322.2| - 2.4e-09 37.4 0.4 2.4e-09 37.4 0.4 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|118431687|ref|NP_148322.2| - 5.9e-08 32.5 0.5 5.9e-08 32.5 0.5 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|118431687|ref|NP_148322.2| - 5.3e-07 29.6 0.3 1e-06 28.7 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain zf-FCS PF06467.14 gi|118431687|ref|NP_148322.2| - 0.027 14.4 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif HTH_26 PF13443.6 gi|118431687|ref|NP_148322.2| - 0.038 14.4 0.5 0.08 13.4 0.5 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DZR PF12773.7 gi|118431687|ref|NP_148322.2| - 0.038 14.0 0.2 0.053 13.6 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon HTH_37 PF13744.6 gi|118431687|ref|NP_148322.2| - 0.072 13.0 0.2 0.15 12.1 0.1 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain ZZ PF00569.17 gi|118431687|ref|NP_148322.2| - 0.17 11.7 0.1 0.25 11.2 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, ZZ type AAA PF00004.29 gi|14601782|ref|NP_148323.1| - 1.1e-44 152.1 0.0 2.3e-44 151.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|14601782|ref|NP_148323.1| - 5e-18 64.6 0.2 1.1e-17 63.5 0.2 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|14601782|ref|NP_148323.1| - 1.9e-11 43.7 0.7 4.9e-11 42.4 0.7 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|14601782|ref|NP_148323.1| - 4.1e-07 30.3 0.0 2.5e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|14601782|ref|NP_148323.1| - 2.4e-06 28.1 1.1 0.0012 19.2 0.1 2.7 2 1 0 3 3 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|14601782|ref|NP_148323.1| - 9.2e-06 25.5 0.0 2.3e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Prot_ATP_OB_N PF17758.1 gi|14601782|ref|NP_148323.1| - 1.2e-05 24.9 2.4 3.3e-05 23.4 1.0 2.4 2 0 0 2 2 2 1 Proteasomal ATPase OB N-terminal domain AAA_5 PF07728.14 gi|14601782|ref|NP_148323.1| - 5.6e-05 23.2 0.5 0.00068 19.6 0.5 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|14601782|ref|NP_148323.1| - 6.6e-05 23.2 1.1 0.02 15.2 0.1 2.7 2 1 1 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|14601782|ref|NP_148323.1| - 0.0013 18.9 0.0 0.0025 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|14601782|ref|NP_148323.1| - 0.0022 17.3 0.0 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|14601782|ref|NP_148323.1| - 0.0031 17.3 0.1 0.018 14.8 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein bZIP_1 PF00170.21 gi|14601782|ref|NP_148323.1| - 0.0051 16.9 0.4 0.011 15.8 0.4 1.5 1 0 0 1 1 1 1 bZIP transcription factor AAA_3 PF07726.11 gi|14601782|ref|NP_148323.1| - 0.0082 16.0 0.0 0.051 13.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|14601782|ref|NP_148323.1| - 0.0092 15.2 0.0 0.016 14.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|14601782|ref|NP_148323.1| - 0.013 15.7 0.0 0.028 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|14601782|ref|NP_148323.1| - 0.014 14.8 0.1 0.035 13.5 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|14601782|ref|NP_148323.1| - 0.027 14.5 0.0 0.057 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|14601782|ref|NP_148323.1| - 0.049 14.1 0.0 0.18 12.3 0.0 2.0 2 0 0 2 2 1 0 ABC transporter RNA_helicase PF00910.22 gi|14601782|ref|NP_148323.1| - 0.052 13.9 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_18 PF13238.6 gi|14601782|ref|NP_148323.1| - 0.053 14.1 0.0 0.14 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|14601782|ref|NP_148323.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|14601782|ref|NP_148323.1| - 0.063 13.0 1.2 0.36 10.5 0.0 2.7 3 1 0 3 3 3 0 Sigma-54 interaction domain Torsin PF06309.11 gi|14601782|ref|NP_148323.1| - 0.089 12.9 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Torsin NACHT PF05729.12 gi|14601782|ref|NP_148323.1| - 0.095 12.6 0.5 0.59 10.0 0.1 2.1 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|14601782|ref|NP_148323.1| - 0.12 11.6 0.0 0.28 10.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|14601782|ref|NP_148323.1| - 0.12 12.1 0.1 0.27 11.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|14601782|ref|NP_148323.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|14601782|ref|NP_148323.1| - 0.18 11.8 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_pol_RpbG PF16992.5 gi|118431688|ref|NP_148324.2| - 9e-24 83.8 0.2 1.1e-23 83.5 0.2 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G TGT PF01702.18 gi|14601784|ref|NP_148325.1| - 1.5e-70 238.1 0.0 2e-70 237.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase BtpA PF03437.15 gi|14601784|ref|NP_148325.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 BtpA family PAC2 PF09754.9 gi|118431689|ref|NP_148326.2| - 9.2e-30 104.2 0.0 1.1e-29 104.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.6 gi|14601786|ref|NP_148327.1| - 1.1e-11 44.6 0.0 1.7e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|14601786|ref|NP_148327.1| - 2.2e-05 24.3 0.3 3.9e-05 23.5 0.3 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|14601786|ref|NP_148327.1| - 0.0081 16.4 0.2 0.016 15.4 0.0 1.5 2 0 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|14601786|ref|NP_148327.1| - 0.12 12.2 0.3 0.36 10.7 0.2 1.8 2 0 0 2 2 2 0 PUA-like domain FUR PF01475.19 gi|118431690|ref|NP_148328.2| - 1.7e-20 73.3 0.2 2e-20 73.1 0.2 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 gi|118431690|ref|NP_148328.2| - 1.8e-06 27.5 0.0 2.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) PadR PF03551.14 gi|118431690|ref|NP_148328.2| - 0.00081 19.3 0.0 0.027 14.4 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|118431690|ref|NP_148328.2| - 0.00086 19.1 0.3 0.014 15.2 0.0 2.8 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|118431690|ref|NP_148328.2| - 0.0023 17.8 0.0 0.0069 16.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|118431690|ref|NP_148328.2| - 0.0036 17.3 0.0 0.0059 16.6 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|118431690|ref|NP_148328.2| - 0.0042 16.8 0.1 0.041 13.7 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_24 PF13412.6 gi|118431690|ref|NP_148328.2| - 0.0045 16.5 0.0 0.021 14.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|118431690|ref|NP_148328.2| - 0.01 15.8 0.0 0.033 14.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2513 PF10711.9 gi|118431690|ref|NP_148328.2| - 0.011 16.0 0.3 0.029 14.7 0.1 1.7 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HxlR PF01638.17 gi|118431690|ref|NP_148328.2| - 0.021 14.7 0.0 0.061 13.2 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|118431690|ref|NP_148328.2| - 0.026 14.3 0.1 0.078 12.8 0.0 1.8 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|118431690|ref|NP_148328.2| - 0.029 14.3 0.0 0.52 10.3 0.0 2.4 2 0 0 2 2 2 0 HTH domain HTH_WhiA PF02650.14 gi|118431690|ref|NP_148328.2| - 0.05 13.9 0.2 0.11 12.8 0.1 1.7 2 0 0 2 2 2 0 WhiA C-terminal HTH domain HTH_32 PF13565.6 gi|118431690|ref|NP_148328.2| - 0.054 14.1 0.1 0.087 13.5 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Penicillinase_R PF03965.16 gi|118431690|ref|NP_148328.2| - 0.084 13.2 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor YjcQ PF09639.10 gi|118431690|ref|NP_148328.2| - 0.12 12.6 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 YjcQ protein Aminotran_5 PF00266.19 gi|14601789|ref|NP_148330.1| - 4.2e-131 437.3 0.0 4.7e-131 437.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|14601789|ref|NP_148330.1| - 9.6e-06 25.1 0.1 1.7e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|14601789|ref|NP_148330.1| - 0.00044 18.9 0.0 0.0008 18.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|14601789|ref|NP_148330.1| - 0.0064 15.5 0.0 0.012 14.6 0.0 1.5 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_1_2 PF00155.21 gi|14601789|ref|NP_148330.1| - 0.0085 15.3 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DBI_PRT PF02277.17 gi|118431693|ref|NP_148334.2| - 3.6e-12 46.2 0.6 5.4e-12 45.6 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase CbiZ PF01955.18 gi|118431694|ref|NP_148335.2| - 9.1e-33 114.0 0.0 1.5e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase PgpA PF04608.13 gi|118431694|ref|NP_148335.2| - 0.069 13.2 0.7 0.7 9.9 0.7 2.3 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A LRV PF01816.17 gi|118431694|ref|NP_148335.2| - 7.1 7.3 9.0 20 5.8 0.4 4.5 5 0 0 5 5 5 0 Leucine rich repeat variant NTP_transf_3 PF12804.7 gi|118431695|ref|NP_148336.2| - 1e-20 74.7 0.1 1.2e-20 74.5 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|118431695|ref|NP_148336.2| - 0.0029 17.4 0.0 0.0031 17.3 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|118431695|ref|NP_148336.2| - 0.2 11.2 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Aminotran_1_2 PF00155.21 gi|118431696|ref|NP_148337.2| - 1.2e-35 123.4 0.0 1.4e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.15 gi|118431697|ref|NP_148338.2| - 5.5e-31 108.4 14.5 6.4e-31 108.1 14.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|118431698|ref|NP_148340.2| - 2.7e-60 203.9 5.4 3.3e-60 203.6 5.4 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Asn_synthase PF00733.21 gi|118431699|ref|NP_148341.2| - 8.1e-25 88.2 0.2 2.2e-21 76.9 0.1 2.1 1 1 1 2 2 2 2 Asparagine synthase Rad50_zn_hook PF04423.14 gi|118431699|ref|NP_148341.2| - 0.046 13.6 0.3 0.084 12.7 0.3 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif DZR PF12773.7 gi|118431699|ref|NP_148341.2| - 0.047 13.7 0.7 0.089 12.8 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon PLATZ PF04640.14 gi|118431699|ref|NP_148341.2| - 0.14 12.8 0.2 0.25 12.0 0.2 1.3 1 0 0 1 1 1 0 PLATZ transcription factor Diphthami_syn_2 PF01902.17 gi|118431700|ref|NP_148342.2| - 6e-22 78.2 0.0 7.2e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|118431700|ref|NP_148342.2| - 0.0024 16.7 0.0 0.003 16.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase AIRS_C PF02769.22 gi|118431701|ref|NP_148343.2| - 1.4e-20 74.0 2.6 1.4e-20 74.0 2.6 1.7 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|118431701|ref|NP_148343.2| - 1.5e-14 54.4 0.9 3.6e-14 53.2 0.9 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Meth_synt_2 PF01717.18 gi|14601803|ref|NP_148344.1| - 5.5e-69 232.9 0.0 6.5e-69 232.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|14601803|ref|NP_148344.1| - 2.1e-14 53.8 0.0 1.6e-11 44.3 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|14601803|ref|NP_148344.1| - 0.017 14.3 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) SHOCT PF09851.9 gi|14601803|ref|NP_148344.1| - 0.12 12.2 0.6 0.12 12.2 0.6 2.1 2 0 0 2 2 2 0 Short C-terminal domain Meth_synt_1 PF08267.12 gi|118431702|ref|NP_148345.2| - 2.8e-21 76.3 0.0 3.1e-20 72.9 0.0 2.1 2 1 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|118431702|ref|NP_148345.2| - 4.2e-19 69.0 0.0 6.5e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain TGS PF02824.21 gi|118431703|ref|NP_148347.2| - 4.5e-23 81.1 0.2 7.5e-23 80.4 0.2 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|118431703|ref|NP_148347.2| - 2.7e-17 62.9 0.0 6.4e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|118431703|ref|NP_148347.2| - 9.3e-14 51.3 0.0 1.5e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|118431703|ref|NP_148347.2| - 1.1e-08 34.8 0.0 2.9e-08 33.4 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|118431703|ref|NP_148347.2| - 8.2e-05 22.6 0.0 0.48 10.3 0.0 3.3 3 0 0 3 3 3 1 RsgA GTPase YchF-GTPase_C PF06071.13 gi|118431703|ref|NP_148347.2| - 0.0011 19.1 0.3 0.15 12.3 0.3 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF933) PduV-EutP PF10662.9 gi|118431703|ref|NP_148347.2| - 0.011 15.5 0.0 0.24 11.2 0.0 2.4 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|118431703|ref|NP_148347.2| - 0.018 14.7 0.0 0.06 13.0 0.0 1.8 2 1 0 2 2 2 0 Ras family AAA_21 PF13304.6 gi|118431703|ref|NP_148347.2| - 0.063 13.1 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|118431703|ref|NP_148347.2| - 0.069 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|118431703|ref|NP_148347.2| - 0.083 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|118431703|ref|NP_148347.2| - 0.16 12.2 0.0 0.37 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|118431703|ref|NP_148347.2| - 0.47 10.9 1.2 5.7 7.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain CN_hydrolase PF00795.22 gi|118431705|ref|NP_148349.2| - 2.6e-19 69.6 0.0 8.1e-19 68.0 0.0 1.8 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase NUDIX PF00293.28 gi|118431706|ref|NP_148350.2| - 2e-16 60.2 0.3 2.3e-16 60.0 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|118431706|ref|NP_148350.2| - 0.099 12.1 0.0 2.4 7.6 0.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) Replic_Relax PF13814.6 gi|118431707|ref|NP_148351.2| - 0.0013 18.8 0.0 0.0014 18.7 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation Sterol_MT_C PF08498.10 gi|118431707|ref|NP_148351.2| - 0.027 14.8 0.1 0.44 10.9 0.0 2.2 2 0 0 2 2 2 0 Sterol methyltransferase C-terminal MarR_2 PF12802.7 gi|118431707|ref|NP_148351.2| - 0.066 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family Exo5 PF09810.9 gi|118431709|ref|NP_148352.2| - 0.12 11.8 0.1 0.34 10.4 0.1 1.6 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease ABC_tran PF00005.27 gi|118431710|ref|NP_148353.2| - 6.1e-34 117.5 0.0 8.9e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431710|ref|NP_148353.2| - 1.1e-09 38.5 0.5 0.00055 19.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431710|ref|NP_148353.2| - 0.00044 19.7 0.0 0.6 9.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|118431710|ref|NP_148353.2| - 0.0023 17.6 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain OB_MalK PF17912.1 gi|118431710|ref|NP_148353.2| - 0.0084 16.9 0.1 0.032 15.1 0.0 2.0 2 0 0 2 2 1 1 MalK OB fold domain AAA_23 PF13476.6 gi|118431710|ref|NP_148353.2| - 0.013 16.0 0.3 0.029 14.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain TOBE PF03459.17 gi|118431710|ref|NP_148353.2| - 0.017 15.4 0.0 0.033 14.5 0.0 1.5 1 0 0 1 1 1 0 TOBE domain AAA_16 PF13191.6 gi|118431710|ref|NP_148353.2| - 0.018 15.4 0.0 0.059 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|118431710|ref|NP_148353.2| - 0.037 13.1 0.0 0.081 12.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|118431710|ref|NP_148353.2| - 0.063 13.7 0.0 0.19 12.1 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|118431710|ref|NP_148353.2| - 0.067 13.5 0.1 0.19 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|118431710|ref|NP_148353.2| - 0.091 12.5 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|118431710|ref|NP_148353.2| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|118431710|ref|NP_148353.2| - 0.14 11.5 0.0 12 5.1 0.0 2.2 2 0 0 2 2 2 0 KaiC RsgA_GTPase PF03193.16 gi|118431710|ref|NP_148353.2| - 0.15 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|118431710|ref|NP_148353.2| - 0.16 12.0 0.0 0.45 10.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|118431710|ref|NP_148353.2| - 0.2 11.4 0.0 0.42 10.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|118431710|ref|NP_148353.2| - 0.2 10.8 0.0 0.38 9.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Ribonuc_red_lgC PF02867.15 gi|118431711|ref|NP_148354.2| - 2e-126 422.6 0.0 3.2e-92 309.7 0.0 2.5 2 1 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|118431711|ref|NP_148354.2| - 5.2e-14 52.0 0.4 1.3e-13 50.8 0.4 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain DUF2795 PF11387.8 gi|118431711|ref|NP_148354.2| - 0.24 11.6 1.9 0.67 10.2 0.1 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Thy1 PF02511.15 gi|118431712|ref|NP_148355.2| - 9.8e-58 195.1 0.0 3.2e-57 193.4 0.0 1.7 1 1 0 1 1 1 1 Thymidylate synthase complementing protein Glycos_transf_1 PF00534.20 gi|118431714|ref|NP_148357.2| - 4e-44 150.2 0.0 1.4e-43 148.4 0.0 1.9 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|118431714|ref|NP_148357.2| - 3.8e-32 111.5 0.0 1.4e-31 109.6 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|118431714|ref|NP_148357.2| - 1.5e-24 86.9 0.2 2.4e-24 86.2 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|118431714|ref|NP_148357.2| - 4.4e-14 53.2 0.2 1.5e-13 51.5 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|118431714|ref|NP_148357.2| - 1.1e-13 51.4 0.0 3e-13 50.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|118431714|ref|NP_148357.2| - 3.3e-05 23.9 0.0 8.6e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Oxidored_nitro PF00148.19 gi|118431714|ref|NP_148357.2| - 0.028 13.1 0.0 0.048 12.4 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Glyco_transf_5 PF08323.11 gi|118431714|ref|NP_148357.2| - 0.033 13.9 0.1 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Starch synthase catalytic domain PIGA PF08288.12 gi|118431714|ref|NP_148357.2| - 0.038 14.6 0.0 0.078 13.6 0.0 1.5 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) MeaB PF03308.16 gi|118431714|ref|NP_148357.2| - 0.049 12.6 0.0 0.091 11.7 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB EnY2 PF10163.9 gi|118431714|ref|NP_148357.2| - 0.18 12.2 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 Transcription factor e(y)2 DUF3492 PF11997.8 gi|118431714|ref|NP_148357.2| - 0.19 11.4 0.1 21 4.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) GHMP_kinases_C PF08544.13 gi|118431715|ref|NP_148358.2| - 3.1e-12 46.7 0.3 7.5e-12 45.5 0.3 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|118431715|ref|NP_148358.2| - 8.9e-12 45.1 5.5 1.5e-11 44.4 3.5 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain Cys_Met_Meta_PP PF01053.20 gi|14601818|ref|NP_148359.1| - 2.4e-98 329.2 0.0 2.9e-98 328.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pribosyltran PF00156.27 gi|118431717|ref|NP_148362.2| - 7.4e-27 93.8 0.1 9.4e-27 93.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|118431717|ref|NP_148362.2| - 0.044 13.2 0.0 0.057 12.8 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Ribosomal_S17e PF00833.18 gi|14601822|ref|NP_148363.1| - 2.2e-19 69.6 0.7 2.3e-19 69.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S17 Cpn60_TCP1 PF00118.24 gi|118431718|ref|NP_148364.2| - 2e-184 613.8 8.3 2.3e-184 613.6 8.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|118431718|ref|NP_148364.2| - 0.076 12.9 1.9 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 DAK2 domain tRNA-synt_1b PF00579.25 gi|118431719|ref|NP_148365.2| - 2e-46 158.7 0.0 2.5e-44 151.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) PAPS_reduct PF01507.19 gi|14601825|ref|NP_148366.1| - 6.2e-32 111.0 0.0 1e-31 110.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|14601825|ref|NP_148366.1| - 0.00033 19.8 0.0 0.00054 19.1 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Diphthami_syn_2 PF01902.17 gi|14601825|ref|NP_148366.1| - 0.00064 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|14601825|ref|NP_148366.1| - 0.016 14.7 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|14601825|ref|NP_148366.1| - 0.046 13.5 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 PP-loop family UbiD PF01977.16 gi|14601828|ref|NP_148369.1| - 3.6e-78 263.2 0.3 4.4e-78 262.9 0.3 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CbiA PF01656.23 gi|14601828|ref|NP_148369.1| - 0.19 11.8 0.1 0.45 10.6 0.0 1.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NUDIX PF00293.28 gi|118431721|ref|NP_148370.2| - 6.6e-22 78.0 0.0 7.3e-22 77.8 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain SH3_18 PF18354.1 gi|118431721|ref|NP_148370.2| - 0.014 15.4 0.1 0.027 14.5 0.1 1.4 1 0 0 1 1 1 0 CarS bacterial SH3 domain Peptidase_M29 PF02073.15 gi|118431722|ref|NP_148371.2| - 9.1e-97 324.4 0.0 1e-96 324.2 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) PhoU PF01895.19 gi|118431723|ref|NP_148372.2| - 7.4e-15 55.2 2.6 2.3e-13 50.4 0.4 2.5 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|118431723|ref|NP_148372.2| - 6.2e-10 38.8 0.0 1.6e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-5a PF01287.20 gi|118431724|ref|NP_148373.2| - 4.6e-12 45.9 0.1 7e-12 45.3 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|118431724|ref|NP_148373.2| - 8.8e-06 25.7 0.0 3.3e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|118431724|ref|NP_148373.2| - 0.018 15.0 1.2 0.033 14.2 1.2 1.6 1 1 0 1 1 1 0 Elongation factor P (EF-P) OB domain UPF0180 PF03698.13 gi|118431724|ref|NP_148373.2| - 0.022 14.9 0.0 0.3 11.3 0.0 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0180) ATP_bind_3 PF01171.20 gi|14601833|ref|NP_148374.1| - 7.6e-11 42.1 0.0 1.5e-10 41.2 0.0 1.5 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|14601833|ref|NP_148374.1| - 0.00013 20.8 0.0 0.0002 20.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|14601833|ref|NP_148374.1| - 0.00042 19.8 5.2 0.0035 16.9 0.5 3.2 3 0 0 3 3 3 1 RecR protein Asn_synthase PF00733.21 gi|14601833|ref|NP_148374.1| - 0.048 13.3 0.1 0.065 12.9 0.1 1.2 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|14601833|ref|NP_148374.1| - 0.093 12.8 0.0 0.2 11.7 0.0 1.6 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family DUF3243 PF11588.8 gi|14601833|ref|NP_148374.1| - 0.12 12.7 0.0 9.5 6.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) QueC PF06508.13 gi|14601833|ref|NP_148374.1| - 0.55 9.7 0.0 0.55 9.7 0.0 2.3 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Rubredoxin_2 PF18073.1 gi|14601833|ref|NP_148374.1| - 2.2 8.1 6.2 4.8 7.0 0.4 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain zf-C2H2_3 PF13878.6 gi|14601833|ref|NP_148374.1| - 3 7.7 6.7 5 7.0 0.0 3.2 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO zf-RRN7 PF11781.8 gi|14601833|ref|NP_148374.1| - 8.6 6.1 7.7 2.7 7.7 0.1 2.8 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|14601833|ref|NP_148374.1| - 8.9 6.3 6.5 28 4.7 0.0 3.5 3 1 1 4 4 4 0 Putative transposase DNA-binding domain ThiS PF02597.20 gi|118431725|ref|YP_874925.1| - 0.012 16.2 0.3 0.015 15.9 0.3 1.1 1 0 0 1 1 1 0 ThiS family Ub-Mut7C PF14451.6 gi|118431725|ref|YP_874925.1| - 0.13 12.1 0.2 0.67 9.8 0.1 2.0 1 1 1 2 2 2 0 Mut7-C ubiquitin DUF521 PF04412.13 gi|118431726|ref|NP_148375.2| - 1.8e-126 422.1 0.0 2.2e-126 421.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|14601835|ref|NP_148376.1| - 2.4e-24 84.9 0.1 3.3e-24 84.5 0.1 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain MBG_2 PF18676.1 gi|14601835|ref|NP_148376.1| - 0.096 13.3 0.1 0.16 12.6 0.1 1.3 1 0 0 1 1 1 0 MBG domain (YGX type) Thymidylate_kin PF02223.17 gi|14601836|ref|NP_148377.1| - 6.7e-35 120.4 0.0 8.2e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|14601836|ref|NP_148377.1| - 5.9e-07 29.5 0.0 1.2e-06 28.6 0.0 1.5 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|14601836|ref|NP_148377.1| - 0.00021 21.8 0.0 0.00036 21.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|14601836|ref|NP_148377.1| - 0.038 14.1 0.0 0.056 13.6 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase Ploopntkinase1 PF18748.1 gi|14601836|ref|NP_148377.1| - 0.049 13.2 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 ApbA_C PF08546.11 gi|14601836|ref|NP_148377.1| - 0.13 12.5 0.1 0.2 11.9 0.1 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal AAA_33 PF13671.6 gi|14601836|ref|NP_148377.1| - 0.2 11.8 1.9 1.6 8.9 0.3 2.3 2 1 0 2 2 2 0 AAA domain ROK PF00480.20 gi|118431727|ref|NP_148378.2| - 1.4e-47 162.6 0.1 1.6e-47 162.4 0.1 1.0 1 0 0 1 1 1 1 ROK family DUF87 PF01935.17 gi|14601838|ref|NP_148379.1| - 1.1e-14 55.1 0.0 1.7e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|14601838|ref|NP_148379.1| - 7.9e-08 31.3 0.0 2.1e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|14601838|ref|NP_148379.1| - 2.1e-05 24.0 0.0 4.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|14601838|ref|NP_148379.1| - 2.4e-05 23.5 0.0 0.00014 20.9 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|14601838|ref|NP_148379.1| - 0.00014 22.1 0.1 0.78 10.0 0.3 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|14601838|ref|NP_148379.1| - 0.0037 17.3 0.1 0.0086 16.1 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IPT PF01745.16 gi|14601838|ref|NP_148379.1| - 0.071 12.5 0.4 0.16 11.4 0.4 1.5 1 0 0 1 1 1 0 Isopentenyl transferase SRP54 PF00448.22 gi|14601838|ref|NP_148379.1| - 0.11 12.1 0.2 0.18 11.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ResIII PF04851.15 gi|14601838|ref|NP_148379.1| - 0.14 12.2 0.0 15 5.6 0.1 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|14601838|ref|NP_148379.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|14601838|ref|NP_148379.1| - 0.2 11.3 0.4 0.6 9.8 0.4 1.7 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 gi|14601838|ref|NP_148379.1| - 0.23 11.1 0.0 0.46 10.1 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) ABC_tran PF00005.27 gi|14601838|ref|NP_148379.1| - 0.25 11.8 0.3 0.74 10.3 0.5 1.7 2 0 0 2 2 1 0 ABC transporter AAA_18 PF13238.6 gi|118431728|ref|NP_148380.2| - 2.3e-11 44.3 0.0 2.6e-10 40.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain SKI PF01202.22 gi|118431728|ref|NP_148380.2| - 6.9e-06 26.3 0.0 8.5e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.29 gi|118431728|ref|NP_148380.2| - 1.6e-05 25.4 0.1 2.8e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|118431728|ref|NP_148380.2| - 0.00015 22.0 0.0 0.0011 19.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|118431728|ref|NP_148380.2| - 0.0012 18.7 0.1 0.15 11.8 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase AAA_28 PF13521.6 gi|118431728|ref|NP_148380.2| - 0.022 15.0 0.1 0.048 13.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|118431728|ref|NP_148380.2| - 0.024 15.1 0.3 0.058 13.8 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain RuvB_N PF05496.12 gi|118431728|ref|NP_148380.2| - 0.024 14.4 0.2 0.054 13.2 0.1 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|118431728|ref|NP_148380.2| - 0.031 14.6 0.1 0.091 13.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|118431728|ref|NP_148380.2| - 0.048 12.9 0.1 0.06 12.6 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|118431728|ref|NP_148380.2| - 0.07 13.1 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Cytidylate_kin2 PF13189.6 gi|118431728|ref|NP_148380.2| - 0.11 12.6 0.0 0.38 10.9 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_19 PF13245.6 gi|118431728|ref|NP_148380.2| - 0.12 12.7 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|118431728|ref|NP_148380.2| - 0.12 12.8 0.0 0.33 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain Toprim_4 PF13662.6 gi|118431729|ref|NP_148382.2| - 4.5e-08 33.4 1.4 7.9e-08 32.7 0.1 2.1 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.22 gi|118431729|ref|NP_148382.2| - 1e-06 28.9 0.1 3.7e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|118431729|ref|NP_148382.2| - 9.4e-06 26.0 0.0 5.2e-05 23.6 0.0 2.3 2 0 0 2 2 2 1 Toprim-like CARD PF00619.21 gi|118431729|ref|NP_148382.2| - 0.01 15.8 0.9 0.025 14.6 0.9 1.6 1 0 0 1 1 1 0 Caspase recruitment domain DNA_pol_B PF00136.21 gi|118431730|ref|NP_148383.2| - 4e-68 230.2 0.0 5.7e-68 229.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|118431730|ref|NP_148383.2| - 7.6e-35 120.6 0.0 9.8e-33 113.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|118431730|ref|NP_148383.2| - 2.8e-07 30.7 0.0 5.6e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|118431730|ref|NP_148383.2| - 1.7e-05 24.6 0.0 3.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|118431730|ref|NP_148383.2| - 0.044 12.6 0.0 0.19 10.5 0.0 1.9 1 1 0 1 1 1 0 DNA polymerase type B, organellar and viral FTCD_N PF07837.12 gi|14601843|ref|NP_148384.1| - 0.085 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain AP_endonuc_2 PF01261.24 gi|118431731|ref|NP_148385.2| - 1.7e-23 83.1 0.0 2.1e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|118431731|ref|NP_148385.2| - 6.4e-05 22.3 0.0 8.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE PNP_UDP_1 PF01048.20 gi|118431732|ref|NP_148386.2| - 5.8e-45 153.4 2.7 7.4e-45 153.0 2.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PfkB PF00294.24 gi|118431733|ref|NP_148387.2| - 6e-35 121.0 0.0 5.6e-34 117.8 0.0 1.9 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Thiolase_N PF00108.23 gi|14601847|ref|NP_148388.1| - 1.4e-65 221.3 0.0 1.7e-65 221.0 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|14601847|ref|NP_148388.1| - 2.5e-41 140.2 0.0 7.9e-41 138.6 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|14601847|ref|NP_148388.1| - 0.032 13.8 2.4 0.38 10.3 1.8 2.5 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain Radical_SAM PF04055.21 gi|14601848|ref|NP_148389.1| - 2.6e-24 86.5 0.0 1.9e-23 83.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|14601848|ref|NP_148389.1| - 7.7e-12 45.3 1.0 1.9e-11 44.0 1.0 1.6 1 0 0 1 1 1 1 B12 binding domain Vut_1 PF02592.15 gi|14601849|ref|NP_148390.1| - 5.1e-52 176.2 10.5 5.1e-52 176.2 10.5 1.6 2 0 0 2 2 2 1 Putative vitamin uptake transporter CTP-dep_RFKase PF01982.16 gi|118431734|ref|NP_148391.2| - 7.9e-32 109.9 0.0 8.9e-32 109.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Amidohydro_1 PF01979.20 gi|118431735|ref|NP_148394.2| - 1.8e-06 27.5 0.0 4.9e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Aminotran_5 PF00266.19 gi|118431738|ref|NP_148400.2| - 0.00018 20.6 0.1 0.00035 19.6 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V GDC-P PF02347.16 gi|118431738|ref|NP_148400.2| - 0.00047 19.1 0.0 0.00086 18.2 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_1_2 PF00155.21 gi|118431738|ref|NP_148400.2| - 0.0065 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Bac_luciferase PF00296.20 gi|118431738|ref|NP_148400.2| - 0.02 14.3 0.7 0.16 11.4 0.1 2.1 2 0 0 2 2 2 0 Luciferase-like monooxygenase Beta_elim_lyase PF01212.21 gi|118431738|ref|NP_148400.2| - 0.06 12.6 0.1 0.15 11.3 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase GDC-P PF02347.16 gi|118431739|ref|NP_148401.2| - 2e-108 363.0 0.0 2.2e-108 362.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein AhpC-TSA PF00578.21 gi|118431740|ref|NP_148402.2| - 8.3e-38 129.1 0.0 9.8e-38 128.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|118431740|ref|NP_148402.2| - 5.5e-23 81.3 0.0 6.2e-23 81.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|118431740|ref|NP_148402.2| - 0.00031 20.8 0.0 0.0027 17.8 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|118431740|ref|NP_148402.2| - 0.041 14.2 0.2 0.076 13.4 0.2 1.5 1 1 0 1 1 1 0 Thioredoxin-like DUF899 PF05988.12 gi|118431740|ref|NP_148402.2| - 0.083 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.14 gi|118431740|ref|NP_148402.2| - 0.14 12.1 0.0 0.21 11.5 0.0 1.5 1 1 0 1 1 1 0 SCO1/SenC POR_N PF01855.19 gi|118431741|ref|NP_148403.2| - 1.9e-60 204.5 0.0 2.7e-60 204.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|118431741|ref|NP_148403.2| - 8.5e-36 123.7 0.0 1.6e-35 122.8 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|118431741|ref|NP_148403.2| - 4.5e-09 36.5 0.1 5.6e-08 33.0 0.0 2.6 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|118431741|ref|NP_148403.2| - 4.9e-06 26.4 0.0 4.4e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|118431741|ref|NP_148403.2| - 0.013 15.1 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|14601863|ref|NP_148404.1| - 1.5e-31 109.2 0.1 2.6e-31 108.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|14601863|ref|NP_148404.1| - 1.8e-22 79.2 0.3 3.9e-22 78.1 0.3 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF1850 PF08905.11 gi|118431742|ref|NP_148405.2| - 5.2e-07 29.9 0.0 7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) SH3_19 PF18597.1 gi|118431742|ref|NP_148405.2| - 0.08 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Myosin X N-terminal SH3 domain Aminotran_3 PF00202.21 gi|118431743|ref|NP_148406.2| - 1e-59 202.3 0.0 1.3e-59 201.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DctM PF06808.12 gi|14601866|ref|NP_148407.1| - 9.4e-77 258.6 58.4 2.9e-53 181.2 19.8 3.4 2 1 1 3 3 3 3 Tripartite ATP-independent periplasmic transporter, DctM component NMT1_3 PF16868.5 gi|118431744|ref|NP_148408.2| - 2.4e-82 276.6 0.2 2.7e-82 276.4 0.2 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|118431744|ref|NP_148408.2| - 1.7e-08 34.7 0.1 2.7e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|118431744|ref|NP_148408.2| - 6.3e-05 22.7 0.4 0.00016 21.3 0.4 1.9 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OsmC PF02566.19 gi|14601868|ref|NP_148409.1| - 0.0004 20.8 0.1 0.00065 20.1 0.1 1.3 1 0 0 1 1 1 1 OsmC-like protein AIM24 PF01987.17 gi|118431745|ref|NP_148410.2| - 1.5e-45 155.5 0.1 1.7e-45 155.3 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MttA_Hcf106 PF02416.16 gi|118431746|ref|YP_874926.1| - 1.9e-15 55.9 0.3 2.3e-15 55.7 0.3 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|118431746|ref|YP_874926.1| - 0.012 16.6 0.0 0.013 16.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) Gln-synt_C PF00120.24 gi|118431747|ref|NP_148412.2| - 1.3e-118 395.9 0.0 1.6e-118 395.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|118431747|ref|NP_148412.2| - 2.4e-14 52.8 0.0 4.7e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DEAD_assoc PF08494.11 gi|118431748|ref|NP_148413.2| - 3.6e-55 186.7 0.0 9.6e-55 185.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|118431748|ref|NP_148413.2| - 2.8e-28 98.8 0.0 4.5e-27 94.9 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|118431748|ref|NP_148413.2| - 2e-17 63.5 0.5 4.7e-17 62.3 0.5 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|118431748|ref|NP_148413.2| - 3.5e-08 33.6 0.0 1e-07 32.1 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Ubiq_cyt_C_chap PF03981.12 gi|118431748|ref|NP_148413.2| - 0.0014 18.7 0.2 0.011 15.8 0.0 2.5 2 0 0 2 2 2 1 Ubiquinol-cytochrome C chaperone SNF2_N PF00176.23 gi|118431748|ref|NP_148413.2| - 0.0035 16.1 0.0 0.0061 15.3 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain TetR_C_8 PF14278.6 gi|118431748|ref|NP_148413.2| - 0.056 13.6 0.0 0.25 11.5 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator C-terminal region PhoH PF02562.16 gi|118431748|ref|NP_148413.2| - 0.087 12.3 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|118431748|ref|NP_148413.2| - 0.15 12.4 0.9 5.9 7.2 0.3 2.8 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|118431748|ref|NP_148413.2| - 0.2 11.9 1.6 12 6.2 0.9 3.5 2 2 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|118431748|ref|NP_148413.2| - 0.25 10.8 1.7 13 5.2 1.0 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DivIC PF04977.15 gi|118431749|ref|NP_148414.2| - 0.0029 17.3 0.2 0.0062 16.3 0.2 1.6 1 0 0 1 1 1 1 Septum formation initiator BST2 PF16716.5 gi|118431749|ref|NP_148414.2| - 0.0038 17.8 0.1 0.0061 17.1 0.1 1.3 1 0 0 1 1 1 1 Bone marrow stromal antigen 2 ZapB PF06005.12 gi|118431749|ref|NP_148414.2| - 0.0047 17.3 1.8 0.0082 16.6 1.8 1.3 1 0 0 1 1 1 1 Cell division protein ZapB TolA_bind_tri PF16331.5 gi|118431749|ref|NP_148414.2| - 0.0049 16.9 0.3 0.0097 16.0 0.3 1.4 1 0 0 1 1 1 1 TolA binding protein trimerisation Filament PF00038.21 gi|118431749|ref|NP_148414.2| - 0.0052 16.4 0.6 0.0078 15.8 0.6 1.2 1 0 0 1 1 1 1 Intermediate filament protein Spc24 PF08286.11 gi|118431749|ref|NP_148414.2| - 0.0096 16.2 0.4 0.025 14.8 0.4 1.6 1 0 0 1 1 1 1 Spc24 subunit of Ndc80 APG6_N PF17675.1 gi|118431749|ref|NP_148414.2| - 0.012 16.1 0.6 0.018 15.5 0.6 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region FlaC_arch PF05377.11 gi|118431749|ref|NP_148414.2| - 0.014 15.8 1.1 0.014 15.8 1.1 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|118431749|ref|NP_148414.2| - 0.015 14.2 1.5 0.022 13.7 1.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein WEMBL PF05701.11 gi|118431749|ref|NP_148414.2| - 0.016 13.9 0.2 0.022 13.5 0.2 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light HALZ PF02183.18 gi|118431749|ref|NP_148414.2| - 0.016 15.4 1.5 0.035 14.3 1.5 1.5 1 0 0 1 1 1 0 Homeobox associated leucine zipper HCMV_UL139 PF12507.8 gi|118431749|ref|NP_148414.2| - 0.018 15.4 0.1 0.035 14.5 0.1 1.4 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein TMF_DNA_bd PF12329.8 gi|118431749|ref|NP_148414.2| - 0.02 14.9 1.9 0.036 14.1 1.9 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding JIP_LZII PF16471.5 gi|118431749|ref|NP_148414.2| - 0.022 14.9 2.3 0.05 13.8 2.3 1.6 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II bZIP_1 PF00170.21 gi|118431749|ref|NP_148414.2| - 0.024 14.7 1.5 0.047 13.8 1.5 1.4 1 0 0 1 1 1 0 bZIP transcription factor CENP-F_leu_zip PF10473.9 gi|118431749|ref|NP_148414.2| - 0.025 14.6 2.5 0.054 13.5 2.4 1.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|118431749|ref|NP_148414.2| - 0.026 14.6 1.0 0.037 14.1 1.0 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Herpes_BLRF2 PF05812.12 gi|118431749|ref|NP_148414.2| - 0.027 14.6 0.4 0.043 14.0 0.4 1.3 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein PspA_IM30 PF04012.12 gi|118431749|ref|NP_148414.2| - 0.028 14.0 0.2 0.042 13.4 0.2 1.2 1 0 0 1 1 1 0 PspA/IM30 family SHE3 PF17078.5 gi|118431749|ref|NP_148414.2| - 0.032 13.9 1.1 0.05 13.3 1.1 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 BicD PF09730.9 gi|118431749|ref|NP_148414.2| - 0.033 12.6 0.2 0.044 12.2 0.2 1.1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Atg14 PF10186.9 gi|118431749|ref|NP_148414.2| - 0.055 12.6 1.2 0.08 12.0 1.2 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc29 PF17082.5 gi|118431749|ref|NP_148414.2| - 0.062 13.1 0.1 0.094 12.5 0.1 1.2 1 0 0 1 1 1 0 Spindle Pole Component 29 Prefoldin_2 PF01920.20 gi|118431749|ref|NP_148414.2| - 0.072 13.0 1.6 0.1 12.5 0.6 1.7 1 1 0 1 1 1 0 Prefoldin subunit Prefoldin PF02996.17 gi|118431749|ref|NP_148414.2| - 0.075 13.0 0.3 0.25 11.3 0.1 1.9 1 1 0 1 1 1 0 Prefoldin subunit Taxilin PF09728.9 gi|118431749|ref|NP_148414.2| - 0.12 11.5 0.4 0.17 11.0 0.4 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein DUF4618 PF15397.6 gi|118431749|ref|NP_148414.2| - 0.15 11.5 0.6 0.25 10.7 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) NRBF2 PF08961.10 gi|118431749|ref|NP_148414.2| - 0.15 11.6 0.6 0.51 9.9 0.9 1.6 2 0 0 2 2 2 0 Nuclear receptor-binding factor 2, autophagy regulator HIP1_clath_bdg PF16515.5 gi|118431749|ref|NP_148414.2| - 0.2 12.3 1.0 0.34 11.5 1.0 1.3 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DHR10 PF18595.1 gi|118431749|ref|NP_148414.2| - 0.48 10.5 3.1 0.74 9.9 3.1 1.2 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain SlyX PF04102.12 gi|118431749|ref|NP_148414.2| - 1.9 9.2 3.2 2.8 8.6 0.6 1.9 1 1 1 2 2 2 0 SlyX MmgE_PrpD PF03972.14 gi|118431750|ref|NP_148415.2| - 1.6e-140 468.6 0.0 1.8e-140 468.4 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family SDH_alpha PF03313.15 gi|118431750|ref|NP_148415.2| - 0.013 15.2 0.5 0.068 12.8 0.8 1.9 2 0 0 2 2 2 0 Serine dehydratase alpha chain Thi4 PF01946.17 gi|118431751|ref|NP_148416.2| - 2.5e-62 210.2 0.2 3.5e-62 209.7 0.0 1.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|118431751|ref|NP_148416.2| - 4.7e-14 52.3 3.7 1.8e-09 37.2 1.3 2.1 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|118431751|ref|NP_148416.2| - 4.9e-14 52.5 0.3 8e-14 51.8 0.3 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|118431751|ref|NP_148416.2| - 1.3e-09 38.1 0.2 1.3e-09 38.1 0.2 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|118431751|ref|NP_148416.2| - 3.4e-09 36.7 5.3 2e-06 27.7 1.9 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|118431751|ref|NP_148416.2| - 8.9e-09 35.0 0.9 1.6e-07 30.9 0.5 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|118431751|ref|NP_148416.2| - 3.2e-08 32.7 0.0 4.1e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|118431751|ref|NP_148416.2| - 5.9e-08 32.3 0.2 2.5e-07 30.3 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|118431751|ref|NP_148416.2| - 1.4e-06 27.6 1.2 2.8e-06 26.7 1.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|118431751|ref|NP_148416.2| - 9.1e-06 25.0 2.7 0.00022 20.4 0.3 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|118431751|ref|NP_148416.2| - 3.4e-05 23.2 0.2 6.4e-05 22.3 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|118431751|ref|NP_148416.2| - 7.3e-05 22.2 0.2 0.00014 21.3 0.2 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|118431751|ref|NP_148416.2| - 0.0023 18.0 1.3 0.0056 16.7 0.2 2.0 2 1 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|118431751|ref|NP_148416.2| - 0.0026 17.1 0.1 0.007 15.7 0.1 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|118431751|ref|NP_148416.2| - 0.012 16.2 1.0 0.029 14.9 0.3 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|118431751|ref|NP_148416.2| - 0.017 14.0 0.5 0.084 11.7 0.4 1.9 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|118431751|ref|NP_148416.2| - 0.038 14.4 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding OKR_DC_1_N PF03709.15 gi|118431751|ref|NP_148416.2| - 0.078 13.2 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ApbA PF02558.16 gi|118431751|ref|NP_148416.2| - 0.09 12.4 0.4 0.22 11.2 0.4 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NfeD PF01957.18 gi|118431752|ref|NP_148417.2| - 6.3e-12 45.7 1.2 2.8e-11 43.6 1.2 2.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|118431752|ref|NP_148417.2| - 0.0014 17.7 0.2 0.0023 17.0 0.2 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|118431752|ref|NP_148417.2| - 0.002 18.0 0.4 0.004 17.0 0.4 1.5 1 1 0 1 1 1 1 Clp protease STAS PF01740.21 gi|118431752|ref|NP_148417.2| - 0.044 13.4 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 STAS domain DUF2613 PF11021.8 gi|118431752|ref|NP_148417.2| - 3.9 7.7 5.9 9.2 6.5 0.4 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) Band_7 PF01145.25 gi|118431753|ref|NP_148418.2| - 1.6e-38 132.5 2.9 2.3e-38 132.0 2.9 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|118431753|ref|NP_148418.2| - 1.2e-05 25.1 0.6 0.00011 22.1 0.3 2.2 2 1 0 2 2 2 1 SPFH domain-Band 7 family LEDGF PF11467.8 gi|118431753|ref|NP_148418.2| - 0.054 13.1 0.4 0.087 12.5 0.4 1.3 1 0 0 1 1 1 0 Lens epithelium-derived growth factor (LEDGF) TatC PF00902.18 gi|118431754|ref|NP_148419.2| - 2.8e-38 131.8 17.1 3.3e-38 131.6 17.1 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.16 gi|118431755|ref|YP_874927.1| - 1.9e-18 65.5 0.2 2.1e-18 65.4 0.2 1.0 1 0 0 1 1 1 1 mttA/Hcf106 family Nterm_IS4 PF13006.7 gi|118431755|ref|YP_874927.1| - 0.076 13.2 0.0 0.085 13.1 0.0 1.1 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal DUF4834 PF16118.5 gi|118431755|ref|YP_874927.1| - 0.089 13.8 0.1 0.1 13.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) SMC_N PF02463.19 gi|118431756|ref|YP_874928.1| - 0.23 10.9 0.0 0.26 10.7 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CbiQ PF02361.16 gi|118431757|ref|NP_148422.2| - 6.8e-10 38.9 11.1 1.1e-09 38.3 11.1 1.3 1 0 0 1 1 1 1 Cobalt transport protein BC10 PF06726.12 gi|118431757|ref|NP_148422.2| - 0.073 13.3 0.1 3.2 8.0 0.0 2.7 2 0 0 2 2 2 0 Bladder cancer-related protein BC10 TPPK_C PF12555.8 gi|118431757|ref|NP_148422.2| - 0.098 12.7 0.5 0.098 12.7 0.5 2.6 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal Lactamase_B PF00753.27 gi|118431758|ref|NP_148423.2| - 7.4e-28 97.9 1.2 1e-27 97.5 1.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|118431758|ref|NP_148423.2| - 0.0066 16.0 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Acyl-CoA_dh_1 PF00441.24 gi|118431760|ref|NP_148425.2| - 5.4e-48 163.0 2.6 7.7e-48 162.5 2.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|118431760|ref|NP_148425.2| - 8.7e-34 116.6 0.6 1.6e-33 115.7 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|118431760|ref|NP_148425.2| - 2.7e-23 82.0 0.0 5e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|118431760|ref|NP_148425.2| - 3.9e-19 69.2 1.0 6.4e-19 68.6 1.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|118431760|ref|NP_148425.2| - 0.021 14.5 0.0 0.063 12.9 0.0 1.8 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Amidohydro_3 PF07969.11 gi|14601882|ref|NP_148426.1| - 5.5e-58 197.6 0.0 7.6e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|14601882|ref|NP_148426.1| - 0.0033 16.8 0.0 0.16 11.3 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family PRP4 PF08799.11 gi|118431761|ref|YP_874929.1| - 0.0097 15.4 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 pre-mRNA processing factor 4 (PRP4) like DUF962 PF06127.11 gi|118431761|ref|YP_874929.1| - 0.13 12.3 0.2 0.17 12.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF962) DUF2157 PF09925.9 gi|118431761|ref|YP_874929.1| - 0.2 11.4 2.8 0.44 10.3 2.8 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF202 PF02656.15 gi|118431761|ref|YP_874929.1| - 2.9 8.4 8.7 1.5 9.3 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) CstA PF02554.14 gi|118431762|ref|NP_148427.2| - 1e-101 340.6 22.4 1e-101 340.6 22.4 1.6 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|118431762|ref|NP_148427.2| - 2.4e-26 92.4 9.1 2.4e-26 92.4 9.1 3.2 3 1 1 4 4 4 1 5TM C-terminal transporter carbon starvation CstA Lig_chan PF00060.26 gi|118431762|ref|NP_148427.2| - 0.09 12.6 0.6 0.56 10.0 0.6 2.4 1 0 0 1 1 1 0 Ligand-gated ion channel ArsA_ATPase PF02374.15 gi|118431763|ref|NP_148429.2| - 3.5e-14 52.7 0.0 3.9e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|118431763|ref|NP_148429.2| - 5e-07 29.8 0.2 8.2e-07 29.1 0.2 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|118431763|ref|NP_148429.2| - 2.6e-06 27.5 0.0 3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|118431763|ref|NP_148429.2| - 0.00074 19.0 0.6 0.001 18.6 0.6 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 gi|118431763|ref|NP_148429.2| - 0.0017 17.6 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.20 gi|118431763|ref|NP_148429.2| - 0.0045 16.9 0.0 0.0058 16.5 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_18 PF13238.6 gi|118431763|ref|NP_148429.2| - 0.015 15.9 0.7 0.016 15.7 0.7 1.3 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|118431763|ref|NP_148429.2| - 0.032 13.6 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|118431763|ref|NP_148429.2| - 0.047 14.1 1.7 0.077 13.4 1.7 1.4 1 1 0 1 1 1 0 AAA ATPase domain MipZ PF09140.11 gi|118431763|ref|NP_148429.2| - 0.053 12.8 0.1 0.068 12.4 0.1 1.2 1 0 0 1 1 1 0 ATPase MipZ NB-ARC PF00931.22 gi|118431763|ref|NP_148429.2| - 0.065 12.4 0.7 0.094 11.9 0.7 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|118431763|ref|NP_148429.2| - 0.073 13.0 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 gi|118431763|ref|NP_148429.2| - 0.075 13.1 0.1 0.18 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|118431763|ref|NP_148429.2| - 0.095 12.4 0.1 0.12 12.1 0.1 1.3 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|118431763|ref|NP_148429.2| - 0.1 11.6 0.4 0.13 11.2 0.4 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|118431763|ref|NP_148429.2| - 0.18 11.3 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|14601886|ref|NP_148430.1| - 6.5e-27 94.5 0.0 7.2e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|14601886|ref|NP_148430.1| - 0.17 11.3 0.1 1.2 8.5 0.0 2.0 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase tRNA-synt_2c PF01411.19 gi|14601887|ref|NP_148431.1| - 1.4e-114 383.6 0.0 1.9e-114 383.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|14601887|ref|NP_148431.1| - 1.5e-21 77.3 4.1 3.5e-21 76.1 4.1 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|14601887|ref|NP_148431.1| - 2.3e-15 56.4 0.2 4.8e-15 55.4 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|14601887|ref|NP_148431.1| - 0.09 12.0 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit Ribosomal_60s PF00428.19 gi|14601888|ref|NP_148432.1| - 2.1e-15 57.1 22.4 2.5e-15 56.8 22.4 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein DEC-1_N PF04625.13 gi|14601888|ref|NP_148432.1| - 0.016 14.2 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region EF-hand_8 PF13833.6 gi|14601888|ref|NP_148432.1| - 0.017 15.0 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 EF-hand domain pair Imm5 PF14423.6 gi|14601888|ref|NP_148432.1| - 0.03 14.6 1.9 0.043 14.1 1.9 1.3 1 1 0 1 1 1 0 Immunity protein Imm5 PepSY_2 PF13670.6 gi|14601888|ref|NP_148432.1| - 0.031 14.3 8.5 0.87 9.6 0.2 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain WRNPLPNID PF15017.6 gi|14601888|ref|NP_148432.1| - 0.037 14.9 2.0 0.061 14.2 2.0 1.3 1 0 0 1 1 1 0 Putative WW-binding domain and destruction box Spore_coat_CotO PF14153.6 gi|14601888|ref|NP_148432.1| - 0.099 12.6 7.6 0.12 12.3 7.6 1.2 1 0 0 1 1 1 0 Spore coat protein CotO DUF1376 PF07120.11 gi|14601888|ref|NP_148432.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1376) Band_7 PF01145.25 gi|14601888|ref|NP_148432.1| - 0.21 11.6 6.2 0.26 11.3 6.2 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family AMP-binding PF00501.28 gi|14601888|ref|NP_148432.1| - 0.29 9.7 2.3 0.31 9.6 2.3 1.0 1 0 0 1 1 1 0 AMP-binding enzyme Flavodoxin_1 PF00258.25 gi|14601888|ref|NP_148432.1| - 0.35 11.1 3.1 0.45 10.7 3.1 1.2 1 0 0 1 1 1 0 Flavodoxin DUF3824 PF12868.7 gi|14601888|ref|NP_148432.1| - 0.57 10.8 5.7 0.84 10.3 5.7 1.2 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) Cytomega_UL84 PF06284.11 gi|14601888|ref|NP_148432.1| - 4.2 5.7 5.7 4.7 5.6 5.7 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein Ribosomal_L10 PF00466.20 gi|118431764|ref|NP_148433.2| - 1.5e-19 70.0 0.9 5.8e-19 68.1 0.1 2.3 3 0 0 3 3 3 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|118431764|ref|NP_148433.2| - 6.7e-16 58.1 0.0 1.8e-15 56.7 0.0 1.8 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|118431764|ref|NP_148433.2| - 0.0048 17.5 17.0 0.015 15.8 17.0 1.9 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|118431765|ref|NP_148435.2| - 7.3e-35 120.6 0.0 8.8e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.19 gi|14601892|ref|NP_148436.1| - 5.1e-18 65.3 0.6 6.5e-18 65.0 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|118431766|ref|NP_148437.2| - 9.6e-20 70.3 0.0 1.6e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|118431766|ref|NP_148437.2| - 1.5e-07 31.1 0.9 3.8e-07 29.8 0.9 1.7 1 0 0 1 1 1 1 KOW motif ProQ_C PF17516.2 gi|118431766|ref|NP_148437.2| - 0.73 9.3 4.0 0.27 10.7 0.6 1.9 2 0 0 2 2 2 0 ProQ C-terminal domain SecE PF00584.20 gi|118431767|ref|YP_874930.1| - 0.0066 16.4 0.0 0.0078 16.1 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Mut7-C PF01927.16 gi|118431768|ref|NP_148439.2| - 1.4e-50 171.2 0.1 1.6e-50 171.0 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|118431768|ref|NP_148439.2| - 1.4e-05 24.7 0.0 2.3e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Zn_ribbon_SprT PF17283.2 gi|118431768|ref|NP_148439.2| - 0.0084 16.0 1.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zf_CopZ PF18423.1 gi|118431768|ref|NP_148439.2| - 0.044 13.7 0.3 0.079 12.9 0.3 1.4 1 0 0 1 1 1 0 Zinc binding domain PIN_9 PF18477.1 gi|118431768|ref|NP_148439.2| - 0.045 14.1 0.0 0.078 13.3 0.0 1.4 1 0 0 1 1 1 0 PIN like domain zf_UBZ PF18439.1 gi|118431768|ref|NP_148439.2| - 0.3 10.7 1.0 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-RRN7 PF11781.8 gi|118431768|ref|NP_148439.2| - 2.6 7.8 8.4 4.3 7.1 2.6 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|118431768|ref|NP_148439.2| - 4.2 7.0 6.4 76 2.9 6.4 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding CBS PF00571.28 gi|118431769|ref|NP_148440.2| - 2.3e-29 101.6 6.6 7.3e-08 32.7 0.0 4.1 4 0 0 4 4 4 4 CBS domain DeoRC PF00455.22 gi|118431769|ref|NP_148440.2| - 0.038 13.9 0.0 0.14 12.1 0.0 2.0 3 0 0 3 3 3 0 DeoR C terminal sensor domain DUF72 PF01904.18 gi|118431770|ref|NP_148442.2| - 4.6e-31 108.6 0.1 6e-31 108.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PCNA_N PF00705.18 gi|14601898|ref|NP_148443.1| - 5.8e-06 26.0 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|14601898|ref|NP_148443.1| - 0.00011 22.4 0.3 0.0045 17.2 0.1 3.0 1 1 2 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain DUF592 PF04574.13 gi|118431772|ref|NP_148444.2| - 0.029 14.2 0.4 0.045 13.5 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF592) B5 PF03484.15 gi|118431772|ref|NP_148444.2| - 0.12 12.7 0.1 0.98 9.8 0.1 2.2 1 1 0 1 1 1 0 tRNA synthetase B5 domain SSP160 PF06933.11 gi|118431773|ref|NP_148445.2| - 1.5 7.0 5.7 1.5 6.9 5.7 1.0 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DEAD PF00270.29 gi|118431775|ref|NP_148447.2| - 1.6e-29 102.9 0.0 3.4e-29 101.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|118431775|ref|NP_148447.2| - 4.5e-20 72.0 0.0 2.7e-18 66.3 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|118431775|ref|NP_148447.2| - 1.4e-14 54.3 0.7 3.6e-14 53.0 0.2 2.0 2 0 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|118431775|ref|NP_148447.2| - 6.7e-07 29.5 0.0 1.4e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|118431775|ref|NP_148447.2| - 0.026 14.5 0.0 0.1 12.6 0.0 2.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_22 PF13401.6 gi|118431775|ref|NP_148447.2| - 0.054 13.8 0.4 0.85 9.9 0.2 3.0 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|118431775|ref|NP_148447.2| - 0.12 12.1 0.2 21 4.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|118431775|ref|NP_148447.2| - 0.16 12.3 0.1 0.96 9.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain zinc_ribbon_10 PF10058.9 gi|118431775|ref|NP_148447.2| - 0.37 10.6 1.0 1 9.1 0.7 2.0 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HalOD1 PF18545.1 gi|118431775|ref|NP_148447.2| - 1.7 9.0 6.1 0.27 11.5 0.8 2.5 3 0 0 3 3 3 0 Halobacterial output domain 1 DHH PF01368.20 gi|14601903|ref|NP_148448.1| - 0.037 14.2 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 DHH family CHAD PF05235.14 gi|14601903|ref|NP_148448.1| - 0.075 13.0 0.0 0.15 12.0 0.0 1.4 1 1 0 1 1 1 0 CHAD domain DHHA1 PF02272.19 gi|14601903|ref|NP_148448.1| - 0.18 12.2 1.2 0.28 11.6 0.3 1.7 2 0 0 2 2 2 0 DHHA1 domain tRNA-synt_2 PF00152.20 gi|118431776|ref|NP_148450.2| - 2.5e-84 283.1 0.0 3e-84 282.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|118431776|ref|NP_148450.2| - 1.5e-13 50.5 0.2 2.4e-13 49.8 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|118431776|ref|NP_148450.2| - 0.0018 17.8 0.2 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF61 PF01886.16 gi|14601906|ref|NP_148451.1| - 1.8e-16 60.3 0.0 2.2e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Fibrillarin PF01269.17 gi|14601907|ref|NP_148452.1| - 2.8e-102 340.6 0.0 3.1e-102 340.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|14601907|ref|NP_148452.1| - 0.00042 20.1 0.0 0.00066 19.5 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|14601907|ref|NP_148452.1| - 0.016 14.9 0.0 0.029 14.1 0.0 1.5 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.18 gi|118431777|ref|NP_148453.2| - 1.5e-73 247.1 0.0 1.9e-73 246.8 0.0 1.1 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HhH-GPD PF00730.25 gi|118431777|ref|NP_148453.2| - 0.02 15.4 0.1 0.073 13.5 0.1 1.9 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein UBA PF00627.31 gi|118431777|ref|NP_148453.2| - 0.02 14.8 0.1 0.19 11.7 0.0 2.7 3 0 0 3 3 3 0 UBA/TS-N domain DUF3173 PF11372.8 gi|118431777|ref|NP_148453.2| - 0.044 13.7 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) Tweety PF04906.13 gi|118431777|ref|NP_148453.2| - 0.23 10.1 0.1 1.6 7.3 0.0 2.0 1 1 1 2 2 2 0 Tweety Apolipoprotein PF01442.18 gi|118431777|ref|NP_148453.2| - 0.27 11.1 2.7 0.92 9.4 1.3 2.4 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain RuvA_C PF07499.13 gi|118431777|ref|NP_148453.2| - 0.51 10.8 3.1 0.58 10.7 0.1 2.7 3 0 0 3 3 3 0 RuvA, C-terminal domain Ribosomal_S30 PF04758.14 gi|14601909|ref|NP_148454.1| - 2.3e-12 46.9 4.2 2.4e-12 46.8 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 Sas10 PF09368.10 gi|14601909|ref|NP_148454.1| - 0.034 14.6 4.4 0.053 14.0 4.2 1.5 1 1 1 2 2 2 0 Sas10 C-terminal domain Asparaginase PF00710.20 gi|14601910|ref|NP_148455.1| - 1.3e-61 207.5 0.0 2.6e-61 206.5 0.0 1.5 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|14601910|ref|NP_148455.1| - 1.2e-33 115.7 0.1 3e-32 111.2 0.0 2.4 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|14601910|ref|NP_148455.1| - 9.2e-14 50.5 0.1 1.9e-13 49.5 0.1 1.6 1 0 0 1 1 1 1 GatD N-terminal domain Gly_reductase PF09338.11 gi|14601910|ref|NP_148455.1| - 0.022 13.2 0.0 0.031 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits Peripla_BP_4 PF13407.6 gi|14601910|ref|NP_148455.1| - 0.028 14.0 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein domain Calmodulin_bind PF07887.11 gi|14601910|ref|NP_148455.1| - 0.17 11.1 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Calmodulin binding protein-like GatB_N PF02934.15 gi|14601911|ref|NP_148456.1| - 2.7e-72 243.5 0.0 3.3e-72 243.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|14601911|ref|NP_148456.1| - 2.7e-22 79.3 0.1 4.8e-22 78.4 0.1 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|14601911|ref|NP_148456.1| - 5.7e-22 77.8 0.0 1.5e-21 76.4 0.0 1.8 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|14601911|ref|NP_148456.1| - 3.5e-07 30.4 0.2 7.5e-07 29.3 0.2 1.5 1 0 0 1 1 1 1 Yqey-like protein FumaraseC_C PF10415.9 gi|14601911|ref|NP_148456.1| - 0.026 15.0 0.9 0.11 12.9 0.2 2.4 2 0 0 2 2 2 0 Fumarase C C-terminus T2SSF PF00482.23 gi|118431778|ref|NP_148457.2| - 3.6e-14 52.8 0.4 3.6e-14 52.8 0.4 2.2 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F RexB PF15968.5 gi|118431778|ref|NP_148457.2| - 0.082 13.4 8.7 0.077 13.5 6.6 2.0 2 1 0 2 2 2 0 Membrane-anchored ion channel, Abi component DUF417 PF04224.12 gi|118431778|ref|NP_148457.2| - 0.9 9.1 10.5 2.5 7.7 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function, DUF417 T2SSF PF00482.23 gi|118431779|ref|NP_148458.2| - 2.6e-14 53.3 0.4 2.6e-14 53.3 0.4 2.5 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F EI24 PF07264.11 gi|118431779|ref|NP_148458.2| - 0.66 10.2 13.4 0.14 12.4 3.7 2.2 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF2207 PF09972.9 gi|118431779|ref|NP_148458.2| - 2.1 7.0 10.2 1.9 7.2 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) FA_desaturase PF00487.24 gi|118431779|ref|NP_148458.2| - 4.6 7.0 6.8 24 4.6 0.1 2.2 2 0 0 2 2 2 0 Fatty acid desaturase T2SSE PF00437.20 gi|118431780|ref|NP_148459.2| - 4.2e-47 160.5 0.0 8.9e-47 159.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|118431780|ref|NP_148459.2| - 0.00024 20.8 0.1 0.00099 18.8 0.1 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|118431780|ref|NP_148459.2| - 0.0011 19.5 0.0 0.0029 18.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|118431780|ref|NP_148459.2| - 0.008 16.5 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|118431780|ref|NP_148459.2| - 0.032 14.0 0.1 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase FtsK_SpoIIIE PF01580.18 gi|118431780|ref|NP_148459.2| - 0.039 13.3 0.0 0.097 12.0 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family SRP54 PF00448.22 gi|118431780|ref|NP_148459.2| - 0.043 13.4 0.1 0.082 12.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|118431780|ref|NP_148459.2| - 0.063 13.8 0.7 0.13 12.7 0.7 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|118431780|ref|NP_148459.2| - 0.098 13.0 0.0 0.31 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|118431780|ref|NP_148459.2| - 0.11 12.1 0.4 0.24 11.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain OsmC PF02566.19 gi|118431781|ref|NP_148460.2| - 5.6e-12 46.0 0.0 8e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein SDH_sah PF01972.16 gi|118431782|ref|NP_148461.2| - 6.5e-116 386.3 0.0 7.3e-116 386.2 0.0 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|118431782|ref|NP_148461.2| - 2.6e-06 27.5 0.0 9.2e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|118431782|ref|NP_148461.2| - 0.0099 15.8 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 Ku_PK_bind PF08785.11 gi|118431782|ref|NP_148461.2| - 0.18 11.9 0.0 0.36 11.0 0.0 1.4 1 0 0 1 1 1 0 Ku C terminal domain like Fer2_2 PF01799.20 gi|14601917|ref|NP_148462.1| - 3.6e-31 107.0 0.0 3.6e-31 107.0 0.0 2.3 2 1 1 3 3 3 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|14601917|ref|NP_148462.1| - 3.1e-06 27.0 0.2 3.1e-06 27.0 0.2 2.2 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|14601917|ref|NP_148462.1| - 0.0003 20.7 0.1 0.00049 20.1 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF348 PF03990.14 gi|14601917|ref|NP_148462.1| - 0.088 12.6 0.3 1.6 8.5 0.0 2.7 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain Fer2_4 PF13510.6 gi|14601917|ref|NP_148462.1| - 0.48 10.5 3.7 11 6.1 2.6 2.7 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|118431783|ref|NP_148464.2| - 2.5e-189 630.3 0.0 3e-189 630.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|118431783|ref|NP_148464.2| - 4.3e-30 104.3 0.2 1.2e-29 102.9 0.1 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF865 PF05906.11 gi|118431783|ref|NP_148464.2| - 0.011 15.5 2.6 0.011 15.4 0.1 2.2 2 0 0 2 2 2 0 Herpesvirus-7 repeat of unknown function (DUF865) DUF3659 PF12396.8 gi|118431783|ref|NP_148464.2| - 0.13 12.2 0.1 0.3 11.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) FAD_binding_5 PF00941.21 gi|14601920|ref|NP_148465.1| - 1.4e-55 187.6 0.0 2e-55 187.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|14601920|ref|NP_148465.1| - 2.1e-26 92.1 0.7 2.1e-26 92.1 0.7 1.6 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain AAA_5 PF07728.14 gi|118431784|ref|NP_148466.2| - 6.9e-12 45.5 0.0 1.2e-10 41.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|118431784|ref|NP_148466.2| - 3e-10 40.6 0.0 7.7e-10 39.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|118431784|ref|NP_148466.2| - 2.1e-09 37.4 0.0 0.0018 18.2 0.0 2.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|118431784|ref|NP_148466.2| - 1.5e-06 28.7 0.2 2.1e-05 24.9 0.2 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|118431784|ref|NP_148466.2| - 1.4e-05 25.4 0.0 6.4e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|118431784|ref|NP_148466.2| - 0.00013 21.8 0.1 0.048 13.4 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_6 PF12774.7 gi|118431784|ref|NP_148466.2| - 0.001 18.1 0.0 0.0015 17.5 0.0 1.2 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region NACHT PF05729.12 gi|118431784|ref|NP_148466.2| - 0.0021 18.0 0.1 0.013 15.4 0.1 2.2 1 1 0 1 1 1 1 NACHT domain AAA_2 PF07724.14 gi|118431784|ref|NP_148466.2| - 0.0039 17.3 0.0 0.0087 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 gi|118431784|ref|NP_148466.2| - 0.0097 15.6 0.0 2.3 7.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|118431784|ref|NP_148466.2| - 0.014 15.9 0.1 0.088 13.4 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|118431784|ref|NP_148466.2| - 0.022 14.9 0.1 0.047 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|118431784|ref|NP_148466.2| - 0.03 14.7 0.0 0.083 13.3 0.0 1.9 1 1 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|118431784|ref|NP_148466.2| - 0.04 13.9 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 gi|118431784|ref|NP_148466.2| - 0.047 12.9 0.2 0.12 11.6 0.0 1.8 2 1 0 2 2 2 0 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|118431784|ref|NP_148466.2| - 0.099 12.0 0.0 0.16 11.3 0.0 1.3 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI VWA_CoxE PF05762.14 gi|118431785|ref|NP_148467.2| - 2.3e-65 220.1 2.1 3.5e-65 219.5 2.1 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|118431785|ref|NP_148467.2| - 0.052 13.5 0.0 0.39 10.6 0.0 2.0 2 0 0 2 2 2 0 von Willebrand factor type A domain NTP_transf_3 PF12804.7 gi|14601923|ref|NP_148468.1| - 9.1e-29 100.9 1.4 1.2e-28 100.5 1.4 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|14601923|ref|NP_148468.1| - 0.0016 18.2 0.0 0.0037 17.0 0.0 1.6 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COXG PF06240.13 gi|118431786|ref|NP_148470.2| - 1.3e-46 157.8 0.0 1.5e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|118431786|ref|NP_148470.2| - 3.4e-14 53.3 0.0 3.8e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|118431786|ref|NP_148470.2| - 2.5e-05 24.5 0.0 6.2e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|118431786|ref|NP_148470.2| - 0.00014 22.1 0.0 0.00017 21.8 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF3211 PF11485.8 gi|118431786|ref|NP_148470.2| - 0.016 15.5 0.0 0.025 14.8 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3211) XdhC_C PF13478.6 gi|14601927|ref|NP_148472.1| - 9.9e-25 87.5 0.0 1.6e-24 86.8 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|14601927|ref|NP_148472.1| - 4.5e-16 58.8 1.4 9.7e-16 57.7 0.4 2.1 2 0 0 2 2 2 1 XdhC and CoxI family TetR_C_16 PF17920.1 gi|14601927|ref|NP_148472.1| - 0.17 12.1 3.7 0.34 11.2 1.2 2.5 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain DNA_pol_B PF00136.21 gi|118431787|ref|NP_148473.2| - 1.8e-14 53.3 0.0 1.3e-13 50.5 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B Htr2 PF17909.1 gi|118431787|ref|NP_148473.2| - 4.6 7.6 5.3 4.3 7.7 1.2 2.4 2 0 0 2 2 2 0 Htr2 transmembrane domain ADH_N PF08240.12 gi|118431789|ref|NP_148480.2| - 1.7e-30 105.1 0.1 2.8e-30 104.4 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|118431789|ref|NP_148480.2| - 5e-27 94.4 0.7 7.6e-27 93.9 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|118431789|ref|NP_148480.2| - 1.2e-12 49.1 1.0 2.7e-12 47.9 0.2 2.1 3 0 0 3 3 3 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|118431789|ref|NP_148480.2| - 0.00076 19.0 0.1 0.0012 18.4 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|118431789|ref|NP_148480.2| - 0.039 13.3 0.9 0.067 12.5 0.9 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_31 PF13847.6 gi|118431789|ref|NP_148480.2| - 0.078 12.8 0.0 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain UPF0146 PF03686.13 gi|118431789|ref|NP_148480.2| - 0.08 12.8 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Amidohydro_2 PF04909.14 gi|14601936|ref|NP_148481.1| - 1.2e-40 140.2 0.9 1.3e-40 140.0 0.9 1.0 1 0 0 1 1 1 1 Amidohydrolase FeS_assembly_P PF01883.19 gi|118431790|ref|NP_148482.2| - 2.9e-12 46.6 0.1 1.2e-11 44.6 0.1 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein TSNR_N PF04705.12 gi|118431790|ref|NP_148482.2| - 0.049 13.7 0.0 0.098 12.8 0.0 1.5 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus Phage_integrase PF00589.22 gi|118431790|ref|NP_148482.2| - 0.053 13.3 0.1 0.092 12.5 0.1 1.4 1 0 0 1 1 1 0 Phage integrase family DUF488 PF04343.13 gi|118431793|ref|NP_148485.2| - 6.6e-30 104.2 0.0 7.8e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Pur_DNA_glyco PF02245.16 gi|14601941|ref|NP_148486.1| - 2.6e-41 141.0 0.0 3.4e-41 140.6 0.0 1.2 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Aminotran_1_2 PF00155.21 gi|118431794|ref|NP_148487.2| - 2.7e-72 243.9 0.0 3.1e-72 243.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|118431794|ref|NP_148487.2| - 1.4e-12 47.6 0.0 2.3e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|118431794|ref|NP_148487.2| - 6.1e-06 25.4 0.0 1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|118431794|ref|NP_148487.2| - 0.00011 21.6 0.0 0.00018 20.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|118431794|ref|NP_148487.2| - 0.00016 20.3 0.0 0.00027 19.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme BPD_transp_1 PF00528.22 gi|118431796|ref|NP_148490.2| - 2.2e-09 37.3 20.6 2.2e-09 37.3 20.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|118431797|ref|NP_148491.2| - 3.1e-09 36.8 23.4 3.1e-09 36.8 23.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|118431797|ref|NP_148491.2| - 2.1 8.5 4.0 4.6 7.4 4.0 1.5 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters ASFV_L11L PF05293.11 gi|118431797|ref|NP_148491.2| - 9.3 6.7 11.9 0.21 11.9 2.2 2.9 3 0 0 3 3 3 0 African swine fever virus (ASFV) L11L protein SBP_bac_1 PF01547.25 gi|118431798|ref|NP_148492.2| - 1.4e-54 186.2 5.7 1.8e-54 185.8 5.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|118431798|ref|NP_148492.2| - 6.7e-07 29.4 4.8 1.3e-06 28.5 4.8 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GST_N PF02798.20 gi|118431798|ref|NP_148492.2| - 0.039 14.3 0.0 0.098 13.0 0.0 1.7 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain TFIIB PF00382.19 gi|118431798|ref|NP_148492.2| - 1.2 9.2 3.7 9.1 6.4 3.7 2.5 1 1 0 1 1 1 0 Transcription factor TFIIB repeat Cas_APE2256 PF09651.10 gi|118431799|ref|NP_148493.2| - 1.1e-37 129.0 0.0 2.2e-37 128.0 0.0 1.5 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) SBP_bac_5 PF00496.22 gi|14601949|ref|NP_148494.1| - 2e-89 300.2 0.2 2.4e-89 299.9 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Wzz PF02706.15 gi|14601949|ref|NP_148494.1| - 1.3 9.4 3.9 36 4.7 0.6 3.0 3 0 0 3 3 3 0 Chain length determinant protein BPD_transp_1 PF00528.22 gi|14601950|ref|NP_148495.1| - 9.4e-42 142.8 11.4 9.4e-42 142.8 11.4 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|14601951|ref|NP_148496.1| - 3.4e-26 92.1 13.0 3.4e-26 92.1 13.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|14601951|ref|NP_148496.1| - 5.6e-05 23.0 0.3 5.6e-05 23.0 0.3 3.9 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF4690 PF15756.5 gi|14601951|ref|NP_148496.1| - 1.3 9.7 4.3 3 8.5 3.4 2.0 2 0 0 2 2 2 0 Small Novel Rich in Cartilage ABC_tran PF00005.27 gi|118431800|ref|NP_148497.2| - 1.3e-28 100.2 0.0 1.8e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|118431800|ref|NP_148497.2| - 1.6e-19 70.1 0.1 2.8e-19 69.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|118431800|ref|NP_148497.2| - 1.5e-08 34.8 0.2 7e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|118431800|ref|NP_148497.2| - 8.7e-05 22.1 0.5 0.025 14.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|118431800|ref|NP_148497.2| - 0.00027 20.6 0.0 0.00047 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|118431800|ref|NP_148497.2| - 0.0039 17.6 0.1 0.0069 16.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|118431800|ref|NP_148497.2| - 0.012 14.8 0.1 0.095 11.9 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 gi|118431800|ref|NP_148497.2| - 0.023 14.2 0.1 0.44 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|118431800|ref|NP_148497.2| - 0.026 14.8 0.1 0.33 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|118431800|ref|NP_148497.2| - 0.041 13.6 0.6 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|118431800|ref|NP_148497.2| - 0.19 10.5 0.3 4 6.1 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|118431801|ref|NP_148498.2| - 2.1e-30 106.0 0.0 2.8e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|118431801|ref|NP_148498.2| - 1.9e-17 63.5 0.3 3.3e-17 62.8 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|118431801|ref|NP_148498.2| - 7.4e-06 26.0 0.4 0.018 14.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|118431801|ref|NP_148498.2| - 0.0024 18.1 0.5 0.0099 16.2 0.5 1.9 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|118431801|ref|NP_148498.2| - 0.0051 16.2 0.1 0.0099 15.2 0.1 1.4 1 0 0 1 1 1 1 KaiC AAA_19 PF13245.6 gi|118431801|ref|NP_148498.2| - 0.014 15.7 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|118431801|ref|NP_148498.2| - 0.04 13.6 0.3 0.26 11.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|118431801|ref|NP_148498.2| - 0.043 14.2 0.4 0.069 13.5 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|118431801|ref|NP_148498.2| - 0.047 12.4 0.0 0.67 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|118431801|ref|NP_148498.2| - 0.048 13.1 0.0 3.1 7.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|118431801|ref|NP_148498.2| - 0.064 12.8 1.4 0.4 10.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|118431801|ref|NP_148498.2| - 0.064 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|118431801|ref|NP_148498.2| - 0.067 12.4 0.7 0.1 11.8 0.1 1.4 2 0 0 2 2 2 0 NB-ARC domain AAA_29 PF13555.6 gi|118431801|ref|NP_148498.2| - 0.074 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|118431801|ref|NP_148498.2| - 0.089 12.7 0.2 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|118431801|ref|NP_148498.2| - 0.14 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|118431801|ref|NP_148498.2| - 0.15 11.7 0.0 0.22 11.1 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_ATPase PF09818.9 gi|118431801|ref|NP_148498.2| - 0.16 10.7 2.0 0.37 9.5 0.3 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PduV-EutP PF10662.9 gi|118431801|ref|NP_148498.2| - 0.19 11.5 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.6 gi|118431801|ref|NP_148498.2| - 0.22 12.0 0.3 0.3 11.6 0.3 1.1 1 0 0 1 1 1 0 AAA domain Lactamase_B PF00753.27 gi|118431802|ref|NP_148499.2| - 6.9e-09 36.0 1.1 7.6e-08 32.6 1.1 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|118431802|ref|NP_148499.2| - 0.0036 16.9 0.0 0.072 12.6 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Pyridoxal_deC PF00282.19 gi|118431804|ref|NP_148500.2| - 2.4e-18 66.0 0.0 4e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|118431804|ref|NP_148500.2| - 7.9e-08 31.6 0.0 3.2e-07 29.7 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|118431804|ref|NP_148500.2| - 0.00018 20.8 0.0 0.00076 18.8 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II PT-VENN PF04829.13 gi|118431804|ref|NP_148500.2| - 0.014 15.4 0.5 0.036 14.2 0.5 1.7 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif DegT_DnrJ_EryC1 PF01041.17 gi|118431804|ref|NP_148500.2| - 0.035 13.4 0.0 0.052 12.9 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|118431804|ref|NP_148500.2| - 0.045 12.5 0.0 0.063 12.0 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.20 gi|118431804|ref|NP_148500.2| - 0.17 10.4 0.0 0.31 9.5 0.0 1.4 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme MFS_1 PF07690.16 gi|118431805|ref|NP_148501.2| - 5.1e-22 78.3 33.3 5.1e-22 78.3 33.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily STAR_dimer PF16544.5 gi|118431806|ref|NP_148502.2| - 0.036 13.6 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 Homodimerisation region of STAR domain protein ABC_tran PF00005.27 gi|118431807|ref|NP_148503.2| - 1.7e-16 61.0 0.0 4.4e-16 59.6 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431807|ref|NP_148503.2| - 1.1e-11 45.2 0.6 5.2e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|118431807|ref|NP_148503.2| - 5.2e-06 26.8 0.0 1.5e-05 25.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain Acetyltransf_1 PF00583.25 gi|118431807|ref|NP_148503.2| - 2.1e-05 24.7 0.0 7.6e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|118431807|ref|NP_148503.2| - 0.00038 20.8 0.0 0.001 19.5 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain SMC_N PF02463.19 gi|118431807|ref|NP_148503.2| - 0.00049 19.6 0.0 0.063 12.7 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|118431807|ref|NP_148503.2| - 0.012 15.4 2.0 0.014 15.1 0.3 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|118431807|ref|NP_148503.2| - 0.012 15.3 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|118431807|ref|NP_148503.2| - 0.013 15.1 0.3 0.063 12.8 0.3 2.2 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|118431807|ref|NP_148503.2| - 0.023 14.6 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Acetyltransf_10 PF13673.7 gi|118431807|ref|NP_148503.2| - 0.024 14.6 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 gi|118431807|ref|NP_148503.2| - 0.084 13.3 2.2 0.1 12.9 0.6 2.0 2 1 0 2 2 1 0 AAA ATPase domain AAA PF00004.29 gi|118431807|ref|NP_148503.2| - 0.088 13.2 0.0 0.39 11.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|118431807|ref|NP_148503.2| - 0.098 12.8 0.9 0.35 11.0 0.2 2.4 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|118431807|ref|NP_148503.2| - 0.13 12.3 0.1 0.28 11.3 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|118431807|ref|NP_148503.2| - 0.15 12.6 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|118431807|ref|NP_148503.2| - 0.18 12.1 0.1 0.47 10.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain GNAT_acetyltr_2 PF13718.6 gi|118431807|ref|NP_148503.2| - 0.22 10.9 0.0 0.33 10.3 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 cobW PF02492.19 gi|118431807|ref|NP_148503.2| - 0.23 11.0 0.7 0.37 10.3 0.7 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|118431807|ref|NP_148503.2| - 0.98 9.3 2.4 0.88 9.5 0.6 1.8 2 0 0 2 2 2 0 NACHT domain Thioredoxin PF00085.20 gi|118431808|ref|NP_148504.2| - 1.3e-13 50.8 0.0 1.8e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|118431808|ref|NP_148504.2| - 1.5e-05 25.4 0.3 0.00029 21.2 0.2 2.4 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|118431808|ref|NP_148504.2| - 0.0031 17.5 0.0 0.006 16.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|118431808|ref|NP_148504.2| - 0.15 12.2 0.7 9.9 6.3 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin Cytochrom_C_asm PF01578.20 gi|14601960|ref|NP_148505.1| - 7.7e-14 52.0 16.2 7.7e-14 52.0 16.2 4.0 3 2 1 4 4 4 1 Cytochrome C assembly protein PA14 PF07691.12 gi|14601961|ref|NP_148506.1| - 0.012 15.4 0.5 0.079 12.8 0.0 2.3 2 0 0 2 2 2 0 PA14 domain CN_hydrolase PF00795.22 gi|118431809|ref|NP_148508.2| - 1.4e-35 123.0 0.0 1.5e-35 122.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase AhpC-TSA PF00578.21 gi|14601964|ref|NP_148509.1| - 2e-31 108.5 0.0 3.3e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|14601964|ref|NP_148509.1| - 1.8e-13 50.5 0.0 2.3e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|14601964|ref|NP_148509.1| - 4.5e-10 39.2 0.0 8.8e-10 38.3 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|14601964|ref|NP_148509.1| - 0.00048 20.2 0.0 0.0006 19.9 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Sel1 PF08238.12 gi|14601964|ref|NP_148509.1| - 0.1 13.3 0.1 0.34 11.7 0.1 1.9 1 0 0 1 1 1 0 Sel1 repeat Lon_C PF05362.13 gi|118431810|ref|NP_148510.2| - 4.6e-10 39.4 0.0 1e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF357 PF04010.13 gi|118431811|ref|NP_148511.2| - 1.4e-18 66.7 2.2 2.5e-18 65.9 2.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|118431811|ref|NP_148511.2| - 2.9e-11 43.7 0.0 4.5e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like Metallophos_2 PF12850.7 gi|118431812|ref|NP_148512.2| - 2.3e-17 63.7 0.1 3.4e-17 63.1 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|118431812|ref|NP_148512.2| - 1.8e-10 40.6 0.0 3.2e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|118431812|ref|NP_148512.2| - 1.2e-06 29.2 0.0 1.3e-05 25.8 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase AMP-binding PF00501.28 gi|118431813|ref|NP_148513.2| - 4e-106 355.1 0.0 5e-106 354.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|118431813|ref|NP_148513.2| - 5.3e-19 69.0 1.9 1.7e-18 67.3 1.9 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain YHS PF04945.13 gi|118431814|ref|YP_874935.1| - 4.3e-19 68.3 1.8 4.3e-19 68.3 1.8 1.5 2 0 0 2 2 2 1 YHS domain Arc_trans_TRASH PF08394.10 gi|118431814|ref|YP_874935.1| - 1.2e-05 25.6 1.6 1.9e-05 24.9 1.6 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|118431814|ref|YP_874935.1| - 0.0015 18.5 1.4 0.002 18.0 0.6 1.7 1 1 1 2 2 2 2 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|118431814|ref|YP_874935.1| - 0.015 14.8 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function SelP_N PF04592.14 gi|118431814|ref|YP_874935.1| - 0.066 12.6 5.3 0.066 12.6 5.3 1.1 1 0 0 1 1 1 0 Selenoprotein P, N terminal region PALP PF00291.25 gi|14601969|ref|NP_148514.1| - 2.4e-81 273.4 3.7 2.9e-81 273.1 3.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CdhD PF03599.16 gi|14601969|ref|NP_148514.1| - 0.0096 14.7 0.0 0.032 13.0 0.0 1.7 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF1936 PF09151.10 gi|14601969|ref|NP_148514.1| - 0.05 13.5 0.6 0.1 12.5 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) HAUS5 PF14817.6 gi|14601969|ref|NP_148514.1| - 0.065 12.0 0.0 0.083 11.6 0.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 DUF1488 PF07369.11 gi|14601970|ref|NP_148515.1| - 0.0029 17.6 1.6 0.018 15.0 0.1 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF1488) Proteasom_PSMB PF10508.9 gi|14601970|ref|NP_148515.1| - 0.017 13.7 0.1 0.024 13.2 0.1 1.2 1 0 0 1 1 1 0 Proteasome non-ATPase 26S subunit E2F_CC-MB PF16421.5 gi|14601970|ref|NP_148515.1| - 0.022 15.1 0.3 0.041 14.2 0.3 1.4 1 0 0 1 1 1 0 E2F transcription factor CC-MB domain Hira PF07569.11 gi|14601970|ref|NP_148515.1| - 0.059 13.1 4.8 1.1 9.0 0.2 2.2 2 0 0 2 2 2 0 TUP1-like enhancer of split Adenosine_kin PF04008.14 gi|118431815|ref|NP_148516.2| - 1.5e-73 245.7 0.1 1.7e-73 245.5 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Peptidase_S9 PF00326.21 gi|118431816|ref|NP_148517.2| - 1.4e-51 175.0 0.2 2e-51 174.5 0.2 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|118431816|ref|NP_148517.2| - 4.9e-11 42.7 1.8 4.3e-08 33.1 0.9 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 gi|118431816|ref|NP_148517.2| - 8.9e-06 25.5 0.3 2.6e-05 24.0 0.3 1.9 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat AXE1 PF05448.12 gi|118431816|ref|NP_148517.2| - 9.5e-06 24.5 1.2 0.0008 18.2 1.2 2.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|118431816|ref|NP_148517.2| - 1.3e-05 25.0 0.1 4.8e-05 23.1 0.1 1.7 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 gi|118431816|ref|NP_148517.2| - 0.0028 17.2 0.0 0.0062 16.1 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase_phd PF10503.9 gi|118431816|ref|NP_148517.2| - 0.0029 17.1 0.0 0.0083 15.6 0.0 1.7 1 0 0 1 1 1 1 Esterase PHB depolymerase BAAT_C PF08840.11 gi|118431816|ref|NP_148517.2| - 0.12 12.3 0.1 0.8 9.6 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2048 PF09752.9 gi|118431816|ref|NP_148517.2| - 0.23 10.5 0.0 0.37 9.8 0.0 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 NTP_transferase PF00483.23 gi|14601973|ref|NP_148518.1| - 4.4e-35 121.4 0.0 5e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|14601973|ref|NP_148518.1| - 1.8e-12 47.9 0.0 2.1e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|14601973|ref|NP_148518.1| - 0.00027 20.8 0.0 0.00038 20.2 0.0 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Lactamase_B_2 PF12706.7 gi|118431818|ref|NP_148520.2| - 3.7e-09 36.4 0.1 1e-08 35.0 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|118431818|ref|NP_148520.2| - 9.2e-05 22.3 0.3 0.00096 19.0 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain DRMBL PF07522.14 gi|118431818|ref|NP_148520.2| - 0.0038 17.4 0.0 0.014 15.6 0.0 1.9 2 0 0 2 2 2 1 DNA repair metallo-beta-lactamase Lactamase_B PF00753.27 gi|118431818|ref|NP_148520.2| - 0.067 13.2 1.9 0.35 10.8 1.9 1.9 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Pec_lyase_N PF04431.13 gi|118431818|ref|NP_148520.2| - 0.16 12.3 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 Pectate lyase, N terminus GlutR_N PF05201.15 gi|14601976|ref|NP_148521.1| - 5.3e-32 110.6 0.0 1.1e-31 109.6 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|14601976|ref|NP_148521.1| - 2.8e-25 89.0 0.0 4.6e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|14601976|ref|NP_148521.1| - 4.4e-07 30.3 0.9 1.2e-06 28.9 0.9 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain DAO PF01266.24 gi|14601976|ref|NP_148521.1| - 0.026 14.1 0.9 0.38 10.3 0.3 2.2 2 1 0 2 2 2 0 FAD dependent oxidoreductase CHAD PF05235.14 gi|14601976|ref|NP_148521.1| - 0.037 14.0 0.9 0.055 13.4 0.2 1.7 2 0 0 2 2 2 0 CHAD domain TetR_C_7 PF14246.6 gi|14601976|ref|NP_148521.1| - 0.041 13.9 0.6 1.5 8.9 0.1 3.2 3 1 1 4 4 4 0 AefR-like transcriptional repressor, C-terminal domain GFO_IDH_MocA PF01408.22 gi|14601976|ref|NP_148521.1| - 0.042 14.7 0.0 0.1 13.5 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Phage_int_SAM_1 PF02899.17 gi|14601976|ref|NP_148521.1| - 0.093 13.0 0.9 22 5.4 0.0 2.6 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain ParA PF10609.9 gi|14601976|ref|NP_148521.1| - 0.34 10.3 0.6 0.59 9.5 0.6 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Porphobil_deam PF01379.20 gi|118431819|ref|NP_148522.2| - 4.2e-56 189.7 0.0 5.4e-56 189.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|118431819|ref|NP_148522.2| - 2.7e-10 40.5 0.0 4.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain PD40 PF07676.12 gi|118431819|ref|NP_148522.2| - 0.059 13.3 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat Aminotran_3 PF00202.21 gi|118431820|ref|NP_148523.2| - 1.6e-68 231.2 0.0 2.1e-68 230.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|118431820|ref|NP_148523.2| - 3.6e-05 23.1 0.0 4.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II ALAD PF00490.21 gi|118431821|ref|NP_148524.2| - 7.4e-130 432.7 0.0 8.5e-130 432.6 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase tRNA-synt_2d PF01409.20 gi|118431822|ref|NP_148525.2| - 3.5e-82 275.6 0.0 4.5e-82 275.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|118431822|ref|NP_148525.2| - 3.6e-06 26.6 0.0 0.00028 20.4 0.0 2.6 1 1 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_His PF13393.6 gi|118431822|ref|NP_148525.2| - 0.00026 20.4 0.8 0.8 8.9 0.0 3.2 3 0 0 3 3 3 2 Histidyl-tRNA synthetase tRNA-synt_2 PF00152.20 gi|118431822|ref|NP_148525.2| - 0.0038 16.4 0.0 4.3 6.3 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|118431822|ref|NP_148525.2| - 0.0079 16.1 6.7 0.047 13.6 0.1 4.1 4 0 0 4 4 4 1 MarR family NQRA PF05896.11 gi|118431822|ref|NP_148525.2| - 0.069 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) TrmB PF01978.19 gi|118431822|ref|NP_148525.2| - 0.2 11.5 0.9 0.73 9.8 0.3 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB tRNA_synthFbeta PF17759.1 gi|14601981|ref|NP_148526.1| - 5e-44 150.3 0.1 7e-44 149.8 0.1 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|14601981|ref|NP_148526.1| - 3.6e-20 72.0 0.0 1.1e-13 51.2 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|14601981|ref|NP_148526.1| - 3.8e-06 26.7 0.0 8.4e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|14601981|ref|NP_148526.1| - 0.017 15.3 0.1 0.34 11.2 0.0 3.0 3 1 0 3 3 3 0 Phe-tRNA synthetase beta subunit B1 domain GCHY-1 PF02649.14 gi|14601982|ref|NP_148527.1| - 4e-56 190.4 0.0 4.6e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|14601982|ref|NP_148527.1| - 0.00011 22.7 0.0 0.00045 20.7 0.0 1.9 2 0 0 2 2 2 1 Dihydroneopterin aldolase APH PF01636.23 gi|118431823|ref|NP_148528.2| - 2e-10 41.0 1.8 3.4e-10 40.3 1.8 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF2797 PF10977.8 gi|118431824|ref|NP_148529.2| - 1.4e-06 28.4 0.0 1.8e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) DUF3989 PF13150.6 gi|118431825|ref|YP_874937.1| - 0.0047 16.6 0.0 0.0077 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3989) DUF373 PF04123.13 gi|118431825|ref|YP_874937.1| - 0.1 12.0 1.0 0.12 11.8 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF4492 PF14899.6 gi|118431825|ref|YP_874937.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4492) DUF1240 PF06836.12 gi|118431825|ref|YP_874937.1| - 0.16 12.5 0.1 0.2 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1240) DUF202 PF02656.15 gi|118431825|ref|YP_874937.1| - 1.3 9.5 7.0 3.4 8.2 7.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Shal-type PF11601.8 gi|14601986|ref|NP_148531.1| - 0.0066 16.0 0.5 0.012 15.1 0.5 1.4 1 0 0 1 1 1 1 Shal-type voltage-gated potassium channels, N-terminal DUF1206 PF06724.11 gi|118431826|ref|YP_874938.1| - 1.1 9.4 8.4 0.21 11.7 1.9 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) PALP PF00291.25 gi|14601988|ref|NP_148533.1| - 2.4e-42 145.4 0.4 2.9e-42 145.1 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1c PF00749.21 gi|118431827|ref|NP_148534.2| - 1.5e-70 237.6 0.0 2.1e-70 237.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|118431827|ref|NP_148534.2| - 4.9e-21 75.4 0.0 7.9e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF447 PF04289.12 gi|118431828|ref|NP_148536.2| - 0.024 14.4 0.0 0.049 13.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF447) MAF_flag10 PF01973.18 gi|14601992|ref|NP_148537.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 Ribosomal_L35Ae PF01247.18 gi|118431829|ref|NP_148538.2| - 1.3e-10 41.2 0.4 1.5e-09 37.9 0.4 1.9 1 1 0 1 1 1 1 Ribosomal protein L35Ae PriX PF18689.1 gi|14601994|ref|NP_148539.1| - 1.3e-42 144.1 0.4 1.7e-42 143.7 0.1 1.3 2 0 0 2 2 2 1 Primase X SepF PF04472.12 gi|14601994|ref|NP_148539.1| - 0.18 12.1 0.0 0.35 11.2 0.0 1.4 1 0 0 1 1 1 0 Cell division protein SepF ATP-synt_C PF00137.21 gi|118431830|ref|NP_148540.2| - 8.6e-18 64.4 15.1 8.6e-18 64.4 15.1 1.8 2 0 0 2 2 2 1 ATP synthase subunit C tRNA-synt_2b PF00587.25 gi|14601997|ref|NP_148542.1| - 3.7e-23 82.4 0.1 5.3e-23 81.9 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|14601997|ref|NP_148542.1| - 1.5e-21 76.3 0.1 2.5e-21 75.6 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|14601997|ref|NP_148542.1| - 5.1e-13 49.0 0.1 9.9e-13 48.1 0.1 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Rad50_zn_hook PF04423.14 gi|14601997|ref|NP_148542.1| - 0.36 10.7 1.6 1 9.3 1.6 1.8 1 0 0 1 1 1 0 Rad50 zinc hook motif Ribosomal_S26e PF01283.19 gi|118431831|ref|YP_874939.1| - 5.8e-22 78.2 2.4 6.9e-22 77.9 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|118431831|ref|YP_874939.1| - 0.0055 16.9 0.3 0.08 13.1 0.2 2.4 2 0 0 2 2 2 1 C4-type zinc ribbon domain Tat PF00539.18 gi|118431831|ref|YP_874939.1| - 0.046 13.9 0.1 0.046 13.9 0.1 2.1 2 1 0 2 2 2 0 Transactivating regulatory protein (Tat) Auto_anti-p27 PF06677.12 gi|118431831|ref|YP_874939.1| - 0.14 12.3 0.8 0.14 12.3 0.8 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0102 PF02021.17 gi|118431832|ref|NP_148546.2| - 1.1e-05 25.6 0.0 2.9e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_1 PF00126.27 gi|118431832|ref|NP_148546.2| - 2.1e-05 24.3 1.0 6e-05 22.9 0.4 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Mrr_cat PF04471.12 gi|118431832|ref|NP_148546.2| - 8.4e-05 22.6 0.1 0.00019 21.5 0.1 1.6 1 1 0 1 1 1 1 Restriction endonuclease HTH_50 PF18024.1 gi|118431832|ref|NP_148546.2| - 0.002 17.7 0.4 3 7.5 0.0 3.3 3 0 0 3 3 3 2 Helix-turn-helix domain Dimerisation PF08100.11 gi|118431832|ref|NP_148546.2| - 0.02 14.9 0.1 0.13 12.3 0.0 2.3 2 0 0 2 2 2 0 Dimerisation domain NucS PF01939.16 gi|118431832|ref|NP_148546.2| - 0.029 13.7 0.2 0.048 13.0 0.2 1.4 1 0 0 1 1 1 0 Endonuclease NucS COG5 PF10392.9 gi|118431832|ref|NP_148546.2| - 0.071 13.3 0.0 0.13 12.4 0.0 1.4 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Hjc PF01870.18 gi|118431832|ref|NP_148546.2| - 0.079 13.0 0.1 0.18 11.8 0.1 1.7 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HTH_AsnC-type PF13404.6 gi|118431832|ref|NP_148546.2| - 0.11 12.3 4.9 0.38 10.6 0.3 3.2 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain NMD3 PF04981.13 gi|118431834|ref|NP_148547.2| - 6e-35 120.9 0.0 6.8e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 NMD3 family Rubredoxin_2 PF18073.1 gi|118431834|ref|NP_148547.2| - 4.1 7.2 5.5 6.8 6.5 1.1 2.8 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|118431834|ref|NP_148547.2| - 5.6 7.2 6.2 9.8 6.4 1.4 2.9 3 0 0 3 3 3 0 Zinc ribbon domain DUF902 PF06001.13 gi|118431835|ref|NP_148548.2| - 0.13 12.8 0.5 12 6.5 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF902) DUF402 PF04167.13 gi|118431836|ref|NP_148549.2| - 1.4e-13 50.8 0.1 2.6e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|118431836|ref|NP_148549.2| - 0.00065 19.2 0.0 0.00096 18.6 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family UPF0147 PF03685.13 gi|14602005|ref|NP_148550.1| - 4.3e-34 116.4 0.4 4.9e-34 116.2 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_2 PF13646.6 gi|14602005|ref|NP_148550.1| - 0.0087 16.4 0.2 0.017 15.5 0.2 1.5 1 1 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.16 gi|14602005|ref|NP_148550.1| - 0.01 16.4 0.7 0.024 15.3 0.7 1.7 1 1 0 1 1 1 0 PBS lyase HEAT-like repeat UPF0253 PF06786.12 gi|14602005|ref|NP_148550.1| - 0.037 14.3 0.0 1 9.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) SAM_adeno_trans PF01887.16 gi|14602006|ref|NP_148551.1| - 3.3e-75 252.5 0.0 3.9e-75 252.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF1678 PF07913.11 gi|118431837|ref|NP_148552.2| - 0.08 12.7 3.7 0.13 12.0 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) DRMBL PF07522.14 gi|118431837|ref|NP_148552.2| - 0.18 12.0 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase BPL_LplA_LipB PF03099.19 gi|14602008|ref|NP_148553.1| - 6.3e-07 29.4 0.0 1.1e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_LplA_LipB PF03099.19 gi|118431838|ref|NP_148554.2| - 2.9e-25 88.7 0.0 4e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.21 gi|118431839|ref|NP_148555.2| - 1.2e-13 51.8 0.0 2.4e-13 50.8 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Biotin_lipoyl PF00364.22 gi|118431840|ref|NP_148556.2| - 2e-13 49.9 2.6 2.9e-13 49.4 2.6 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|118431840|ref|NP_148556.2| - 5.5e-06 26.1 1.2 0.00045 20.0 0.1 2.2 1 1 1 2 2 2 1 Biotin-lipoyl like RnfC_N PF13375.6 gi|118431840|ref|NP_148556.2| - 6.5e-05 22.8 0.3 8.3e-05 22.5 0.3 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|118431840|ref|NP_148556.2| - 0.0016 18.3 1.4 0.0022 17.9 1.0 1.4 1 1 0 1 1 1 1 Glycine cleavage H-protein QRPTase_N PF02749.16 gi|118431840|ref|NP_148556.2| - 0.0047 17.0 0.6 1.6 8.8 0.1 2.1 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain ATP-synt_ab_Xtn PF16886.5 gi|118431840|ref|NP_148556.2| - 0.016 15.1 0.2 0.019 14.8 0.2 1.1 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension HlyD_D23 PF16576.5 gi|118431840|ref|NP_148556.2| - 0.02 14.1 0.7 0.35 10.0 0.1 2.0 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|118431840|ref|NP_148556.2| - 0.022 15.4 0.5 0.04 14.6 0.4 1.5 1 1 0 1 1 1 0 HlyD family secretion protein PYNP_C PF07831.13 gi|118431840|ref|NP_148556.2| - 0.032 13.9 0.1 0.056 13.1 0.1 1.4 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain T2SSB PF16537.5 gi|118431840|ref|NP_148556.2| - 0.035 13.7 0.4 0.94 9.1 0.1 2.1 2 0 0 2 2 2 0 Type II secretion system protein B PTS_EIIA_1 PF00358.20 gi|118431840|ref|NP_148556.2| - 0.043 13.6 0.3 1.4 8.7 0.0 2.3 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|118431840|ref|NP_148556.2| - 0.077 12.4 0.5 0.088 12.2 0.5 1.0 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) OMPdecase PF00215.24 gi|14602012|ref|NP_148557.1| - 3.7e-27 95.4 0.0 4.5e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF3693 PF12472.8 gi|14602012|ref|NP_148557.1| - 0.14 11.8 0.5 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 Phage related protein Pribosyltran PF00156.27 gi|118431841|ref|NP_148558.2| - 1.2e-16 60.7 0.2 2.4e-16 59.7 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|118431841|ref|NP_148558.2| - 0.0046 16.4 0.0 0.0058 16.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|118431841|ref|NP_148558.2| - 0.19 11.2 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Isochorismatase PF00857.20 gi|118431842|ref|NP_148559.2| - 7e-43 146.8 0.0 8.7e-43 146.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family CCG PF02754.16 gi|118431843|ref|NP_148560.2| - 4e-10 39.8 0.0 3.7e-08 33.5 0.0 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Acyl-CoA_dh_1 PF00441.24 gi|14602016|ref|NP_148561.1| - 5.5e-32 111.0 2.8 9e-32 110.4 2.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|14602016|ref|NP_148561.1| - 1.7e-16 60.9 0.1 4.1e-16 59.6 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|14602016|ref|NP_148561.1| - 3.1e-16 59.9 2.3 4.5e-16 59.3 2.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|14602016|ref|NP_148561.1| - 3.3e-14 52.8 0.0 5.4e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain NfeD PF01957.18 gi|118431844|ref|NP_148562.2| - 1.3e-07 31.9 3.0 1.9e-07 31.3 3.0 1.3 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding HD_3 PF13023.6 gi|118431846|ref|NP_148564.2| - 9e-14 51.7 0.0 1.2e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|118431846|ref|NP_148564.2| - 1.3e-08 34.8 0.0 2.2e-08 34.0 0.0 1.4 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|118431846|ref|NP_148564.2| - 5.6e-06 26.6 0.1 1.3e-05 25.4 0.1 1.7 1 1 0 1 1 1 1 HD domain Nif11 PF07862.11 gi|118431846|ref|NP_148564.2| - 0.18 12.1 1.0 2.5 8.5 0.0 2.8 2 1 0 2 2 2 0 Nif11 domain Abhydrolase_6 PF12697.7 gi|118431848|ref|NP_148565.2| - 2e-24 87.4 7.5 2.6e-24 87.1 7.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|118431848|ref|NP_148565.2| - 3.3e-18 66.3 0.0 2.8e-15 56.7 0.1 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|118431848|ref|NP_148565.2| - 1.3e-16 60.7 0.2 1.8e-16 60.1 0.2 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|118431848|ref|NP_148565.2| - 0.0073 16.1 0.1 2.8 7.7 0.0 2.2 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Abhydro_lipase PF04083.16 gi|118431848|ref|NP_148565.2| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Carb_kinase PF01256.17 gi|118431849|ref|NP_148566.2| - 3.5e-41 141.3 0.1 6.5e-41 140.4 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|118431849|ref|NP_148566.2| - 4.1e-38 130.9 1.9 7.2e-38 130.1 1.9 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus PIN_9 PF18477.1 gi|118431850|ref|NP_148567.2| - 9.6e-14 51.7 0.2 1.2e-13 51.3 0.2 1.1 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|118431850|ref|NP_148567.2| - 2.3e-08 34.4 0.0 3e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Fcf1 NYN_YacP PF05991.11 gi|118431850|ref|NP_148567.2| - 2.2e-05 24.5 0.0 2.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 YacP-like NYN domain 5_3_exonuc_N PF02739.16 gi|118431850|ref|NP_148567.2| - 0.0001 22.2 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain PIN PF01850.21 gi|118431850|ref|NP_148567.2| - 0.0017 18.9 0.1 0.0023 18.4 0.1 1.3 1 1 0 1 1 1 1 PIN domain Nitro_FeMo-Co PF02579.17 gi|118431850|ref|NP_148567.2| - 0.039 14.3 0.1 0.28 11.5 0.0 2.1 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor PIN_4 PF13638.6 gi|118431850|ref|NP_148567.2| - 0.07 13.4 0.1 0.57 10.5 0.1 2.1 1 1 0 1 1 1 0 PIN domain Hydrolase PF00702.26 gi|118431850|ref|NP_148567.2| - 0.084 13.1 0.1 1.1 9.5 0.1 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase eIF2_C PF09173.11 gi|118431851|ref|NP_148568.2| - 1.5e-31 108.4 1.0 4.2e-31 107.0 1.0 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|118431851|ref|NP_148568.2| - 4.6e-30 104.6 0.0 2.7e-29 102.1 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|118431851|ref|NP_148568.2| - 2.6e-08 34.1 3.4 8e-08 32.6 2.3 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|118431851|ref|NP_148568.2| - 7.1e-05 22.8 0.1 0.0015 18.4 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|118431851|ref|NP_148568.2| - 0.00023 21.2 0.0 0.00053 20.0 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|118431851|ref|NP_148568.2| - 0.0037 17.0 0.1 0.88 9.3 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|118431851|ref|NP_148568.2| - 0.027 13.4 0.2 0.36 9.8 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FeoB_N PF02421.18 gi|118431851|ref|NP_148568.2| - 0.045 13.3 1.5 4.2 6.9 0.1 2.6 2 0 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|118431851|ref|NP_148568.2| - 0.12 12.4 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Dynamin_N PF00350.23 gi|118431851|ref|NP_148568.2| - 0.18 11.9 0.0 0.26 11.3 0.0 1.5 1 1 0 1 1 1 0 Dynamin family Ribosomal_S6e PF01092.19 gi|118431852|ref|NP_148569.2| - 5.7e-24 84.5 0.0 1.5e-23 83.1 0.0 1.7 1 1 0 1 1 1 1 Ribosomal protein S6e DUF2922 PF11148.8 gi|118431852|ref|NP_148569.2| - 0.012 15.3 0.1 0.029 14.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2922) GTP_EFTU_D4 PF14578.6 gi|14602026|ref|NP_148571.1| - 9.6e-37 124.8 0.2 2.6e-36 123.4 0.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|14602026|ref|NP_148571.1| - 3.2e-31 108.4 0.0 1.4e-30 106.3 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|14602026|ref|NP_148571.1| - 1.9e-21 76.1 0.0 4.1e-21 75.1 0.0 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|14602026|ref|NP_148571.1| - 3.4e-13 49.8 2.8 8.3e-13 48.5 0.3 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|14602026|ref|NP_148571.1| - 1.7e-07 31.3 0.0 4.8e-07 29.9 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|14602026|ref|NP_148571.1| - 0.011 15.9 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|14602026|ref|NP_148571.1| - 0.085 12.6 0.0 0.42 10.3 0.0 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein STAS PF01740.21 gi|14602026|ref|NP_148571.1| - 0.1 12.2 0.0 0.44 10.2 0.0 2.1 1 0 0 1 1 1 0 STAS domain Ras PF00071.22 gi|14602026|ref|NP_148571.1| - 0.18 11.4 0.0 1.2 8.7 0.0 2.4 2 1 0 2 2 2 0 Ras family NDK PF00334.19 gi|14602027|ref|NP_148572.1| - 3.2e-57 192.3 0.0 3.5e-57 192.2 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase LysE PF01810.18 gi|14602028|ref|NP_148573.1| - 6.8e-21 74.6 12.1 7.8e-21 74.4 12.1 1.0 1 0 0 1 1 1 1 LysE type translocator Ribosomal_L24e PF01246.20 gi|14602029|ref|NP_148574.1| - 8.5e-19 67.6 1.0 9.6e-19 67.4 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|14602029|ref|NP_148574.1| - 2.2e-05 24.3 2.0 3.1e-05 23.8 2.0 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|14602029|ref|NP_148574.1| - 0.00052 19.9 1.0 0.051 13.6 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.13 gi|14602029|ref|NP_148574.1| - 0.0011 19.0 0.1 0.0015 18.6 0.1 1.2 1 0 0 1 1 1 1 YHS domain Ta0938 PF11494.8 gi|14602029|ref|NP_148574.1| - 0.0062 16.8 0.0 0.0062 16.8 0.0 1.1 1 0 0 1 1 1 1 Ta0938 NosL PF05573.12 gi|14602029|ref|NP_148574.1| - 0.19 12.1 0.0 0.2 12.0 0.0 1.1 1 0 0 1 1 1 0 NosL VATC PF18716.1 gi|14602029|ref|NP_148574.1| - 0.43 10.5 5.2 8.4 6.3 5.2 2.1 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|118431853|ref|NP_148575.2| - 1.2e-31 108.5 2.8 1.4e-31 108.2 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e SCFA_trans PF02667.14 gi|118431854|ref|NP_148576.2| - 6.2e-26 91.4 0.4 7.2e-26 91.2 0.4 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter SCFA_trans PF02667.14 gi|118431855|ref|YP_874942.1| - 5.1e-114 381.8 9.4 5.7e-114 381.6 9.4 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter DUF5596 PF18082.1 gi|118431855|ref|YP_874942.1| - 0.027 14.3 0.0 0.072 12.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5596) Thiolase_N PF00108.23 gi|14602032|ref|NP_148578.1| - 4.2e-09 36.1 0.1 7.1e-05 22.3 0.0 2.8 2 1 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|14602032|ref|NP_148578.1| - 0.003 17.2 0.0 4.1 7.1 0.0 2.7 2 0 0 2 2 2 2 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|14602032|ref|NP_148578.1| - 0.14 12.0 0.0 7.5 6.5 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|14602033|ref|NP_148579.1| - 5.8e-12 45.4 0.4 9.6e-12 44.7 0.4 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|14602033|ref|NP_148579.1| - 4.1e-11 42.5 2.9 9.2e-11 41.4 2.9 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|14602033|ref|NP_148579.1| - 0.031 14.3 0.1 0.057 13.5 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|14602033|ref|NP_148579.1| - 0.032 13.9 3.5 0.07 12.9 3.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF3809 PF12723.7 gi|14602033|ref|NP_148579.1| - 0.056 13.7 0.0 0.092 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3809) OB_aCoA_assoc PF01796.17 gi|118431857|ref|NP_148580.2| - 3e-10 39.9 0.7 5.4e-10 39.1 0.7 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|118431857|ref|NP_148580.2| - 5.9e-07 29.2 0.0 8.6e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Polysacc_deac_2 PF04748.13 gi|118431857|ref|NP_148580.2| - 0.25 10.5 0.0 0.35 10.0 0.0 1.1 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase Helicase_RecD PF05127.14 gi|118431858|ref|NP_148582.2| - 4.3e-56 189.6 0.0 1.2e-55 188.1 0.0 1.8 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|118431858|ref|NP_148582.2| - 8.3e-41 139.9 0.0 2.8e-29 102.1 0.0 2.8 2 1 1 3 3 3 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|118431858|ref|NP_148582.2| - 2.1e-30 104.5 0.0 4.9e-30 103.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|118431858|ref|NP_148582.2| - 7.3e-09 35.7 0.0 1.4e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_7 PF13508.7 gi|118431858|ref|NP_148582.2| - 4.7e-06 26.9 0.1 2.6e-05 24.5 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|118431858|ref|NP_148582.2| - 2.9e-05 24.3 0.1 8.7e-05 22.7 0.1 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_30 PF13604.6 gi|118431858|ref|NP_148582.2| - 0.0012 18.6 0.0 0.0056 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Sigma70_r4_2 PF08281.12 gi|118431858|ref|NP_148582.2| - 0.0017 18.0 0.2 0.0052 16.4 0.2 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Acetyltransf_9 PF13527.7 gi|118431858|ref|NP_148582.2| - 0.053 13.6 0.0 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|118431858|ref|NP_148582.2| - 0.066 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|118431858|ref|NP_148582.2| - 0.13 12.3 0.0 0.41 10.6 0.0 1.8 1 0 0 1 1 1 0 FR47-like protein DEAD PF00270.29 gi|118431858|ref|NP_148582.2| - 0.15 11.8 0.0 0.56 10.0 0.0 1.9 1 1 0 1 1 1 0 DEAD/DEAH box helicase Sua5_yciO_yrdC PF01300.18 gi|14602037|ref|NP_148583.1| - 1e-59 201.0 0.0 2e-59 200.1 0.0 1.5 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 gi|14602037|ref|NP_148583.1| - 3.8e-26 92.2 0.0 6e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Phos_pyr_kin PF08543.12 gi|118431859|ref|NP_148584.2| - 9.8e-96 319.9 3.3 1.2e-95 319.5 3.3 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|118431859|ref|NP_148584.2| - 7.6e-60 201.3 0.2 2.3e-58 196.4 0.1 2.3 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|118431859|ref|NP_148584.2| - 2.2e-11 43.6 0.6 4.3e-11 42.7 0.4 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Smoa_sbd PF17885.1 gi|118431859|ref|NP_148584.2| - 0.018 15.1 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 Styrene monooxygenase A putative substrate binding domain 4PPT_N PF17837.1 gi|118431859|ref|NP_148584.2| - 0.04 14.0 0.3 0.61 10.3 0.0 2.7 2 0 0 2 2 2 0 4'-phosphopantetheinyl transferase N-terminal domain ABC_tran PF00005.27 gi|118431861|ref|NP_148587.2| - 2.7e-14 53.9 0.0 7e-13 49.3 0.0 2.6 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|118431861|ref|NP_148587.2| - 6e-09 36.1 0.6 0.00014 21.8 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|118431861|ref|NP_148587.2| - 4.9e-05 23.9 0.0 7.2e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|118431861|ref|NP_148587.2| - 8.2e-05 22.3 0.3 0.00018 21.2 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|118431861|ref|NP_148587.2| - 0.00048 20.6 0.3 0.0016 18.8 0.2 1.8 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|118431861|ref|NP_148587.2| - 0.0011 18.5 0.0 0.011 15.2 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|118431861|ref|NP_148587.2| - 0.0013 18.5 0.1 0.0022 17.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|118431861|ref|NP_148587.2| - 0.0037 16.1 0.1 0.0059 15.5 0.1 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|118431861|ref|NP_148587.2| - 0.0048 17.2 0.0 0.011 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|118431861|ref|NP_148587.2| - 0.0055 16.5 0.0 0.0071 16.1 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.8 gi|118431861|ref|NP_148587.2| - 0.0071 13.9 0.2 0.0088 13.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_8 PF12780.7 gi|118431861|ref|NP_148587.2| - 0.013 14.8 0.3 0.047 13.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 AAA_18 PF13238.6 gi|118431861|ref|NP_148587.2| - 0.027 15.0 0.1 0.55 10.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|118431861|ref|NP_148587.2| - 0.027 14.5 0.4 1.4 8.9 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|118431861|ref|NP_148587.2| - 0.031 14.2 0.3 0.076 12.9 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|118431861|ref|NP_148587.2| - 0.052 13.7 0.4 1.6 8.9 0.1 2.5 2 1 1 3 3 3 0 AAA domain DUF3520 PF12034.8 gi|118431861|ref|NP_148587.2| - 0.054 13.6 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3520) SRP54 PF00448.22 gi|118431861|ref|NP_148587.2| - 0.085 12.5 0.3 0.21 11.2 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|118431861|ref|NP_148587.2| - 0.11 13.0 0.0 6.5 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|118431861|ref|NP_148587.2| - 0.13 12.6 0.1 0.24 11.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|118431861|ref|NP_148587.2| - 0.14 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_28 PF13521.6 gi|118431861|ref|NP_148587.2| - 0.16 12.2 0.7 0.42 10.8 0.1 2.0 3 0 0 3 3 2 0 AAA domain NTPase_1 PF03266.15 gi|118431861|ref|NP_148587.2| - 0.17 11.8 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 NTPase Viral_helicase1 PF01443.18 gi|118431861|ref|NP_148587.2| - 0.19 11.5 0.0 1.8 8.3 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_13 PF13166.6 gi|118431861|ref|NP_148587.2| - 0.24 10.0 0.0 0.63 8.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|118431861|ref|NP_148587.2| - 0.26 10.9 0.1 5.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.6 gi|118431861|ref|NP_148587.2| - 0.37 10.8 0.8 0.85 9.7 0.1 1.9 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|118431862|ref|NP_148588.2| - 1.5e-17 64.4 0.0 2.2e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431862|ref|NP_148588.2| - 0.0009 19.1 1.5 0.064 13.0 0.1 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|118431862|ref|NP_148588.2| - 0.0011 18.6 0.1 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|118431862|ref|NP_148588.2| - 0.0016 19.0 0.0 0.0024 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|118431862|ref|NP_148588.2| - 0.0057 17.0 0.2 0.0082 16.5 0.2 1.3 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|118431862|ref|NP_148588.2| - 0.036 13.1 0.3 0.055 12.5 0.3 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|118431862|ref|NP_148588.2| - 0.082 12.8 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|118431862|ref|NP_148588.2| - 0.14 11.8 1.8 0.31 10.7 1.8 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|118431862|ref|NP_148588.2| - 0.15 11.6 0.1 0.31 10.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain CDPS PF16715.5 gi|118431862|ref|NP_148588.2| - 0.17 11.5 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Cyclodipeptide synthase ABC_ATPase PF09818.9 gi|118431862|ref|NP_148588.2| - 0.18 10.6 1.2 2.2 7.0 0.5 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_PrkA PF08298.11 gi|118431862|ref|NP_148588.2| - 0.25 10.2 0.0 0.45 9.4 0.0 1.3 1 1 0 1 1 1 0 PrkA AAA domain CbiA PF01656.23 gi|14602043|ref|NP_148589.1| - 0.0012 18.9 0.0 0.0012 18.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.14 gi|14602043|ref|NP_148589.1| - 0.013 15.5 0.1 0.04 13.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|14602043|ref|NP_148589.1| - 0.047 14.1 0.2 0.064 13.6 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|14602043|ref|NP_148589.1| - 0.12 12.3 0.2 0.18 11.7 0.2 1.3 1 0 0 1 1 1 0 NACHT domain DUF3343 PF11823.8 gi|14602043|ref|NP_148589.1| - 0.2 11.1 0.1 1.2 8.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3343) ThiW PF09512.10 gi|118431863|ref|NP_148591.2| - 3.3e-45 153.9 16.4 3.7e-45 153.7 16.4 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) ECF_trnsprt PF12822.7 gi|118431863|ref|NP_148591.2| - 0.19 11.8 14.1 0.31 11.1 14.1 1.3 1 0 0 1 1 1 0 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|118431863|ref|NP_148591.2| - 0.8 9.2 17.8 2 7.9 17.8 1.7 1 1 0 1 1 1 0 5TMR of 5TMR-LYT HTH_5 PF01022.20 gi|14602047|ref|NP_148593.1| - 9.6e-09 35.0 0.1 1.8e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|14602047|ref|NP_148593.1| - 5.6e-06 25.8 0.2 9.5e-06 25.1 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|14602047|ref|NP_148593.1| - 0.00011 22.0 0.1 0.00018 21.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|14602047|ref|NP_148593.1| - 0.00015 21.5 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain DUF1495 PF07381.11 gi|14602047|ref|NP_148593.1| - 0.00032 20.5 0.2 0.012 15.4 0.2 2.2 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Rrf2 PF02082.20 gi|14602047|ref|NP_148593.1| - 0.00046 20.5 0.1 0.00066 20.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|14602047|ref|NP_148593.1| - 0.00088 19.3 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|14602047|ref|NP_148593.1| - 0.0011 18.7 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|14602047|ref|NP_148593.1| - 0.0036 17.4 0.2 0.0052 16.9 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.6 gi|14602047|ref|NP_148593.1| - 0.0059 16.8 0.1 0.011 15.9 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|14602047|ref|NP_148593.1| - 0.009 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|14602047|ref|NP_148593.1| - 0.0098 15.8 0.0 0.021 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|14602047|ref|NP_148593.1| - 0.01 16.3 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|14602047|ref|NP_148593.1| - 0.029 14.3 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Dimerisation domain HTH_11 PF08279.12 gi|14602047|ref|NP_148593.1| - 0.062 13.3 0.1 0.16 11.9 0.1 1.7 1 1 0 1 1 1 0 HTH domain B-block_TFIIIC PF04182.12 gi|14602047|ref|NP_148593.1| - 0.08 13.1 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC PheRS_DBD1 PF18552.1 gi|14602047|ref|NP_148593.1| - 0.092 12.5 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 PheRS DNA binding domain 1 HTH_29 PF13551.6 gi|14602047|ref|NP_148593.1| - 0.097 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 gi|14602047|ref|NP_148593.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 MarR family Imm27 PF15590.6 gi|14602047|ref|NP_148593.1| - 0.12 12.1 0.0 0.28 11.0 0.0 1.6 2 0 0 2 2 2 0 Immunity protein 27 RP-C PF03428.13 gi|14602047|ref|NP_148593.1| - 0.14 11.8 0.1 0.2 11.3 0.1 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain MatE PF01554.18 gi|118431864|ref|NP_148594.2| - 1.9e-44 151.1 45.2 8e-25 87.4 20.0 2.7 3 0 0 3 3 3 2 MatE MurJ PF03023.14 gi|118431864|ref|NP_148594.2| - 6.3e-07 28.4 13.0 6.3e-07 28.4 13.0 2.2 1 1 0 2 2 2 1 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 gi|118431864|ref|NP_148594.2| - 0.00033 20.8 49.6 0.0012 18.9 23.6 4.5 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain ETF PF01012.21 gi|118431866|ref|NP_148596.2| - 4.5e-42 144.0 0.0 5.6e-42 143.7 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|14602051|ref|NP_148597.1| - 1.7e-38 132.3 0.0 2.4e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|14602051|ref|NP_148597.1| - 3.2e-33 113.6 0.7 6.6e-33 112.6 0.7 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain FRQ PF09421.10 gi|14602051|ref|NP_148597.1| - 0.064 11.3 0.0 0.088 10.8 0.0 1.1 1 0 0 1 1 1 0 Frequency clock protein DAO PF01266.24 gi|14602052|ref|NP_148598.1| - 9e-18 65.0 7.4 4.4e-10 39.7 0.5 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|14602052|ref|NP_148598.1| - 1.5e-09 37.5 3.9 3.3e-08 33.1 0.6 2.4 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|14602052|ref|NP_148598.1| - 3.7e-09 36.2 7.0 1.3e-06 27.7 2.7 2.4 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|14602052|ref|NP_148598.1| - 7.2e-09 35.5 3.5 1.7e-08 34.3 3.5 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|14602052|ref|NP_148598.1| - 3.3e-08 33.6 1.3 7.9e-08 32.4 1.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|14602052|ref|NP_148598.1| - 3.5e-08 32.6 1.3 2.4e-07 29.8 1.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|14602052|ref|NP_148598.1| - 1.5e-07 31.0 3.0 5.1e-07 29.2 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|14602052|ref|NP_148598.1| - 2.5e-07 30.3 3.6 6.4e-07 28.9 0.8 2.6 3 0 0 3 3 3 1 FAD binding domain Trp_halogenase PF04820.14 gi|14602052|ref|NP_148598.1| - 2.9e-06 26.4 2.6 0.038 12.9 0.1 2.9 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|14602052|ref|NP_148598.1| - 4.9e-05 22.7 0.6 8.1e-05 22.0 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|14602052|ref|NP_148598.1| - 0.0001 21.5 6.1 0.00029 20.0 3.9 2.4 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|14602052|ref|NP_148598.1| - 0.00016 22.2 1.4 0.0045 17.5 0.9 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|14602052|ref|NP_148598.1| - 0.0007 18.8 1.4 0.0007 18.8 1.4 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|14602052|ref|NP_148598.1| - 0.0013 18.1 0.4 0.0025 17.2 0.1 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GDI PF00996.18 gi|14602052|ref|NP_148598.1| - 0.008 14.7 0.1 1 7.8 0.1 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor NAD_binding_9 PF13454.6 gi|14602052|ref|NP_148598.1| - 0.044 13.8 1.1 0.13 12.2 1.1 1.9 1 1 0 1 1 1 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|14602052|ref|NP_148598.1| - 0.18 11.7 1.3 0.63 9.9 0.4 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|14602052|ref|NP_148598.1| - 0.19 11.0 1.9 0.3 10.3 1.2 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Aminotran_5 PF00266.19 gi|14602053|ref|NP_148599.1| - 2.1e-33 115.8 0.0 2.7e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|14602053|ref|NP_148599.1| - 0.026 13.0 0.0 0.04 12.5 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Translin PF01997.16 gi|14602054|ref|NP_148600.1| - 3.7e-07 30.3 0.0 9.4e-07 29.0 0.0 1.7 1 1 1 2 2 2 1 Translin family GHMP_kinases_C PF08544.13 gi|14602055|ref|NP_148601.1| - 1.2e-06 28.8 0.1 2.6e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|14602055|ref|NP_148601.1| - 0.0003 21.0 0.2 0.00068 19.8 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Na_H_Exchanger PF00999.21 gi|118431867|ref|NP_148602.2| - 1.3e-50 172.3 58.1 1.9e-50 171.8 58.1 1.2 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Thioredoxin PF00085.20 gi|118431868|ref|NP_148604.2| - 6.7e-17 61.4 0.0 9.2e-17 60.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|118431868|ref|NP_148604.2| - 5e-07 30.2 0.0 9.3e-06 26.1 0.0 2.5 1 1 1 2 2 2 1 Thioredoxin-like domain DIM1 PF02966.16 gi|118431868|ref|NP_148604.2| - 0.00013 21.8 0.0 0.0002 21.2 0.0 1.4 1 1 0 1 1 1 1 Mitosis protein DIM1 OST3_OST6 PF04756.13 gi|118431868|ref|NP_148604.2| - 0.00031 20.2 0.0 0.00034 20.1 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family TraF PF13728.6 gi|118431868|ref|NP_148604.2| - 0.0013 18.6 0.0 0.0018 18.2 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|118431868|ref|NP_148604.2| - 0.0056 16.8 0.0 0.01 16.0 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like HyaE PF07449.11 gi|118431868|ref|NP_148604.2| - 0.0076 16.2 0.1 0.024 14.6 0.1 1.8 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.6 gi|118431868|ref|NP_148604.2| - 0.014 15.1 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin DUF836 PF05768.14 gi|118431868|ref|NP_148604.2| - 0.073 13.5 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.6 gi|118431868|ref|NP_148604.2| - 0.081 13.3 0.0 3.1 8.2 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like DFF-C PF09033.10 gi|118431868|ref|NP_148604.2| - 0.096 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 DNA Fragmentation factor 45kDa, C terminal domain Thioredoxin_3 PF13192.6 gi|118431868|ref|NP_148604.2| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain Lambda_CIII PF02061.16 gi|118431868|ref|NP_148604.2| - 0.32 11.1 2.5 1.9 8.6 0.1 2.9 3 0 0 3 3 3 0 Lambda Phage CIII THUMP PF02926.17 gi|118431869|ref|YP_874943.1| - 1.1e-18 67.8 0.4 1.4e-18 67.3 0.4 1.1 1 0 0 1 1 1 1 THUMP domain PGM_PMM_I PF02878.16 gi|118431870|ref|NP_148606.2| - 2.6e-37 127.6 0.0 5.8e-37 126.5 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|118431870|ref|NP_148606.2| - 3.1e-16 59.8 0.0 6.6e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|118431870|ref|NP_148606.2| - 1.1e-08 35.1 1.3 1.7e-08 34.5 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|118431870|ref|NP_148606.2| - 6.8e-05 23.0 0.1 0.00025 21.2 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FCSD-flav_bind PF09242.11 gi|118431870|ref|NP_148606.2| - 0.16 12.3 0.0 7.7 7.0 0.0 2.5 2 0 0 2 2 2 0 Flavocytochrome c sulphide dehydrogenase, flavin-binding DUF2208 PF09973.9 gi|14602061|ref|NP_148607.1| - 1.8e-74 250.2 5.1 2e-74 250.1 5.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) YjcZ_2 PF09680.10 gi|14602061|ref|NP_148607.1| - 4.4 7.0 9.5 0.84 9.3 5.2 2.0 2 0 0 2 2 2 0 Family of unknown function Amidohydro_1 PF01979.20 gi|14602062|ref|NP_148608.1| - 2e-11 43.8 0.0 1.1e-10 41.4 0.0 2.1 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|14602062|ref|NP_148608.1| - 0.00019 21.0 0.0 0.00035 20.2 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase family SCP2 PF02036.17 gi|118431871|ref|YP_874944.1| - 3.2e-18 66.1 0.1 3.7e-18 65.9 0.1 1.0 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.6 gi|118431871|ref|YP_874944.1| - 2.8e-05 24.4 0.0 3.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal YkyA PF10368.9 gi|118431871|ref|YP_874944.1| - 0.034 13.8 0.0 0.049 13.3 0.0 1.4 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Pox_VERT_large PF04441.13 gi|118431871|ref|YP_874944.1| - 0.042 12.1 0.1 0.049 11.9 0.1 1.0 1 0 0 1 1 1 0 Poxvirus early transcription factor (VETF), large subunit SCP2_2 PF13530.6 gi|118431871|ref|YP_874944.1| - 0.084 13.3 0.0 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 Sterol carrier protein domain DeoC PF01791.9 gi|118431872|ref|NP_148609.2| - 5.3e-08 32.8 0.0 1.1e-07 31.7 0.0 1.5 1 1 0 1 1 1 1 DeoC/LacD family aldolase FMN_dh PF01070.18 gi|118431872|ref|NP_148609.2| - 0.023 13.7 4.7 0.18 10.8 2.0 2.5 3 0 0 3 3 3 0 FMN-dependent dehydrogenase DUF4346 PF14251.6 gi|14602064|ref|NP_148610.1| - 4.2e-08 33.2 0.0 6.6e-05 22.9 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4346) GHMP_kinases_C PF08544.13 gi|14602065|ref|NP_148611.1| - 6e-16 58.6 1.4 2.3e-15 56.7 1.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|14602065|ref|NP_148611.1| - 1.5e-14 54.0 1.2 3.4e-14 52.8 1.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|14602065|ref|NP_148611.1| - 0.092 12.3 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Galactokinase galactose-binding signature Peptidase_S9 PF00326.21 gi|118431873|ref|NP_148612.2| - 2.1e-45 154.8 0.0 2.8e-45 154.4 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|118431873|ref|NP_148612.2| - 1.6e-12 47.6 0.0 6e-05 22.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|118431873|ref|NP_148612.2| - 3.9e-10 39.4 0.0 2.1e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|118431873|ref|NP_148612.2| - 8.8e-07 28.7 0.0 2.6e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family PD40 PF07676.12 gi|118431873|ref|NP_148612.2| - 6.5e-06 25.9 6.0 0.00061 19.7 0.1 4.2 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat AXE1 PF05448.12 gi|118431873|ref|NP_148612.2| - 2.5e-05 23.1 0.1 0.0014 17.4 0.1 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|118431873|ref|NP_148612.2| - 4.4e-05 24.2 0.8 0.0018 18.9 0.3 2.3 1 1 1 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|118431873|ref|NP_148612.2| - 0.00017 21.5 0.0 0.06 13.1 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.13 gi|118431873|ref|NP_148612.2| - 0.0002 21.3 0.6 0.0098 15.8 0.6 2.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF2920 PF11144.8 gi|118431873|ref|NP_148612.2| - 0.006 15.8 0.0 0.38 9.9 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) LIP PF03583.14 gi|118431873|ref|NP_148612.2| - 0.0074 15.6 0.1 1.8 7.8 0.0 2.1 2 0 0 2 2 2 2 Secretory lipase Peptidase_S15 PF02129.18 gi|118431873|ref|NP_148612.2| - 0.009 15.6 0.0 2.4 7.7 0.0 2.2 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.10 gi|118431873|ref|NP_148612.2| - 0.018 15.2 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Esterase_phd PF10503.9 gi|118431873|ref|NP_148612.2| - 0.031 13.8 0.0 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Esterase PHB depolymerase DPPIV_N PF00930.21 gi|118431873|ref|NP_148612.2| - 0.048 12.4 0.0 0.95 8.1 0.0 2.1 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region HET-S PF17108.5 gi|118431873|ref|NP_148612.2| - 0.098 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 N-terminal small S protein of HET, non-prionic TFIIB PF00382.19 gi|118431874|ref|NP_148613.2| - 2.7e-34 117.1 0.4 3.2e-16 59.1 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat SCAB-ABD PF16711.5 gi|118431874|ref|NP_148613.2| - 0.00016 21.5 0.1 0.77 9.7 0.1 2.6 2 0 0 2 2 2 2 Actin-binding domain of plant-specific actin-binding protein Sigma70_r4 PF04545.16 gi|118431874|ref|NP_148613.2| - 0.0012 18.3 2.0 0.011 15.2 0.3 2.9 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|118431874|ref|NP_148613.2| - 0.0022 17.8 0.0 0.013 15.3 0.0 2.3 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|118431874|ref|NP_148613.2| - 0.0058 16.3 2.6 0.13 11.9 0.4 3.3 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|118431874|ref|NP_148613.2| - 0.019 14.7 0.4 0.43 10.4 0.4 2.8 1 1 0 1 1 1 0 Homeodomain-like domain RB_B PF01857.20 gi|118431874|ref|NP_148613.2| - 0.022 14.8 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain DUF2089 PF09862.9 gi|118431874|ref|NP_148613.2| - 0.049 13.7 0.5 0.15 12.1 0.1 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2089) Cyclin_C PF02984.19 gi|118431874|ref|NP_148613.2| - 0.056 13.5 0.0 0.33 11.1 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain Phage_terminase PF10668.9 gi|118431874|ref|NP_148613.2| - 0.086 12.9 0.9 1.4 9.0 0.1 3.0 2 1 1 3 3 3 0 Phage terminase small subunit Cyclin_N PF00134.23 gi|118431874|ref|NP_148613.2| - 0.17 11.7 0.0 0.52 10.0 0.0 1.7 2 0 0 2 2 2 0 Cyclin, N-terminal domain LexA_DNA_bind PF01726.16 gi|14602068|ref|NP_148614.1| - 0.018 14.8 0.0 0.059 13.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.6 gi|14602068|ref|NP_148614.1| - 0.034 14.3 0.2 0.17 12.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|14602068|ref|NP_148614.1| - 0.17 12.3 0.1 4.2 7.8 0.0 2.5 2 0 0 2 2 2 0 Transposase DUF711 PF05167.12 gi|14602070|ref|NP_148616.1| - 1.7e-24 86.5 0.1 1.6e-23 83.2 0.1 2.0 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) CopD PF05425.13 gi|14602071|ref|NP_148617.1| - 3.7e-13 49.8 5.3 3.7e-13 49.8 5.3 1.5 2 0 0 2 2 2 1 Copper resistance protein D DUF4153 PF13687.6 gi|14602071|ref|NP_148617.1| - 0.0072 16.0 2.0 0.017 14.7 1.8 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4153) DUF212 PF02681.14 gi|14602071|ref|NP_148617.1| - 0.04 14.0 0.3 0.059 13.5 0.1 1.5 1 1 0 1 1 1 0 Divergent PAP2 family DUF2628 PF10947.8 gi|14602071|ref|NP_148617.1| - 0.65 10.4 5.3 0.64 10.4 4.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2269 PF10027.9 gi|14602071|ref|NP_148617.1| - 0.97 9.5 11.1 4.1 7.4 11.1 2.1 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) BtpA PF03437.15 gi|14602072|ref|NP_148618.1| - 1.2e-112 375.5 0.0 1.4e-112 375.3 0.0 1.0 1 0 0 1 1 1 1 BtpA family Asparaginase_C PF17763.1 gi|14602072|ref|NP_148618.1| - 0.00043 20.5 0.2 0.72 10.1 0.0 2.2 2 0 0 2 2 2 2 Glutaminase/Asparaginase C-terminal domain Trp_syntA PF00290.20 gi|14602072|ref|NP_148618.1| - 0.15 10.9 0.1 0.25 10.1 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Peptidase_M17 PF00883.21 gi|118431875|ref|NP_148619.2| - 1.1e-100 337.0 0.0 1.3e-100 336.7 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 gi|118431875|ref|NP_148619.2| - 2.7e-08 33.7 0.5 2.3e-07 30.7 0.0 2.7 3 0 0 3 3 3 1 Cytosol aminopeptidase family, N-terminal domain GMP_synt_C PF00958.22 gi|14602074|ref|NP_148620.1| - 2.3e-37 126.9 0.0 4e-37 126.2 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.28 gi|14602074|ref|NP_148620.1| - 1.5e-31 109.6 0.0 2.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.17 gi|14602074|ref|NP_148620.1| - 2.2e-10 40.1 0.1 7.3e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|14602074|ref|NP_148620.1| - 5.8e-10 39.3 0.2 4.6e-08 33.1 0.1 3.1 1 1 1 2 2 2 1 Peptidase C26 QueC PF06508.13 gi|14602074|ref|NP_148620.1| - 9.5e-06 25.3 0.0 0.0039 16.7 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|14602074|ref|NP_148620.1| - 0.011 15.5 0.0 0.016 14.9 0.0 1.4 1 1 0 1 1 1 0 PP-loop family ThiI PF02568.14 gi|14602074|ref|NP_148620.1| - 0.046 13.3 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|14602074|ref|NP_148620.1| - 0.048 13.7 0.0 0.09 12.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|14602074|ref|NP_148620.1| - 0.055 12.3 0.1 0.21 10.4 0.1 1.7 2 0 0 2 2 2 0 tRNA methyl transferase Asn_synthase PF00733.21 gi|14602074|ref|NP_148620.1| - 0.27 10.8 0.6 0.62 9.7 0.2 1.7 2 0 0 2 2 2 0 Asparagine synthase UPF0547 PF10571.9 gi|118431876|ref|YP_874945.1| - 9.4e-05 22.4 2.8 0.0017 18.4 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|118431876|ref|YP_874945.1| - 0.01 15.5 0.2 2.7 7.8 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|118431876|ref|YP_874945.1| - 0.014 15.0 2.9 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.6 gi|118431876|ref|YP_874945.1| - 0.019 15.4 0.2 0.033 14.5 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|118431876|ref|YP_874945.1| - 0.023 14.8 0.6 0.79 9.9 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|118431876|ref|YP_874945.1| - 0.023 14.7 0.1 0.05 13.6 0.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF4379 PF14311.6 gi|118431876|ref|YP_874945.1| - 0.041 14.2 1.5 0.2 12.0 0.0 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain HypA PF01155.19 gi|118431876|ref|YP_874945.1| - 0.06 13.4 0.2 6.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|118431876|ref|YP_874945.1| - 0.066 12.9 3.5 3 7.7 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|118431876|ref|YP_874945.1| - 0.067 13.2 1.3 0.25 11.3 1.3 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Elf1 PF05129.13 gi|118431876|ref|YP_874945.1| - 0.08 13.0 0.2 0.31 11.1 0.2 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like TFIIS_C PF01096.18 gi|118431876|ref|YP_874945.1| - 0.093 12.6 1.5 3.9 7.4 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.6 gi|118431876|ref|YP_874945.1| - 0.11 12.6 0.3 6 7.1 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|118431876|ref|YP_874945.1| - 0.11 12.2 1.3 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|118431876|ref|YP_874945.1| - 0.12 12.9 0.3 1.5 9.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Ribosomal_L44 PF00935.19 gi|118431876|ref|YP_874945.1| - 0.21 12.1 0.9 0.53 10.8 0.1 1.8 1 1 1 2 2 2 0 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|118431876|ref|YP_874945.1| - 0.24 10.9 2.9 1.5 8.4 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2225 PF09986.9 gi|118431876|ref|YP_874945.1| - 0.32 10.7 0.7 0.76 9.5 0.7 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) MS_channel PF00924.18 gi|118431877|ref|YP_874946.1| - 6.6e-08 32.3 0.7 1e-07 31.7 0.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2061 PF09834.9 gi|118431877|ref|YP_874946.1| - 0.57 10.7 5.5 1.3 9.6 5.5 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2061) TrkA_N PF02254.18 gi|14602214|ref|NP_148621.1| - 1.6e-24 86.4 1.0 2.2e-24 85.9 0.4 1.5 2 0 0 2 2 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|14602214|ref|NP_148621.1| - 3.3e-09 37.1 0.1 8e-09 35.9 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|14602214|ref|NP_148621.1| - 5.3e-06 26.2 1.2 1.8e-05 24.5 0.2 2.2 2 0 0 2 2 2 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|14602214|ref|NP_148621.1| - 1.1e-05 25.7 0.1 1.8e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|14602214|ref|NP_148621.1| - 1.8e-05 24.7 0.0 3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|14602214|ref|NP_148621.1| - 2.1e-05 24.2 0.0 3.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|14602214|ref|NP_148621.1| - 3.3e-05 23.4 0.3 0.0014 18.1 0.1 2.1 1 1 1 2 2 2 1 ThiF family F420_oxidored PF03807.17 gi|14602214|ref|NP_148621.1| - 3.4e-05 24.3 0.5 0.00013 22.5 0.1 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|14602214|ref|NP_148621.1| - 3.9e-05 24.1 0.0 6.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain adh_short PF00106.25 gi|14602214|ref|NP_148621.1| - 5.4e-05 22.7 0.2 9.9e-05 21.9 0.0 1.5 2 0 0 2 2 1 1 short chain dehydrogenase Pyr_redox PF00070.27 gi|14602214|ref|NP_148621.1| - 8.1e-05 23.1 0.1 0.00023 21.6 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|14602214|ref|NP_148621.1| - 9.3e-05 22.1 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|14602214|ref|NP_148621.1| - 0.00011 21.6 0.2 0.00025 20.4 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|14602214|ref|NP_148621.1| - 0.00012 21.5 0.1 0.00024 20.5 0.0 1.6 2 0 0 2 2 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|14602214|ref|NP_148621.1| - 0.00013 22.1 0.0 0.00028 20.9 0.0 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|14602214|ref|NP_148621.1| - 0.00026 20.9 0.0 0.00051 20.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|14602214|ref|NP_148621.1| - 0.00063 19.3 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.14 gi|14602214|ref|NP_148621.1| - 0.00064 19.1 0.2 0.00095 18.5 0.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|14602214|ref|NP_148621.1| - 0.0018 18.5 0.0 0.0024 18.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.20 gi|14602214|ref|NP_148621.1| - 0.003 17.7 0.1 0.0074 16.4 0.1 1.7 2 0 0 2 2 1 1 Dihydrodipicolinate reductase, N-terminus Methyltransf_25 PF13649.6 gi|14602214|ref|NP_148621.1| - 0.0045 17.7 0.0 0.0074 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NAD_binding_8 PF13450.6 gi|14602214|ref|NP_148621.1| - 0.0055 16.9 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|14602214|ref|NP_148621.1| - 0.007 15.7 0.3 0.009 15.3 0.3 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3Beta_HSD PF01073.19 gi|14602214|ref|NP_148621.1| - 0.0097 14.9 0.7 0.013 14.5 0.2 1.4 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GFO_IDH_MocA PF01408.22 gi|14602214|ref|NP_148621.1| - 0.02 15.7 0.0 0.037 14.9 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold MTS PF05175.14 gi|14602214|ref|NP_148621.1| - 0.032 13.8 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain RmlD_sub_bind PF04321.17 gi|14602214|ref|NP_148621.1| - 0.033 13.3 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain adh_short_C2 PF13561.6 gi|14602214|ref|NP_148621.1| - 0.035 13.7 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase OKR_DC_1_N PF03709.15 gi|14602214|ref|NP_148621.1| - 0.041 14.2 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Thi4 PF01946.17 gi|14602214|ref|NP_148621.1| - 0.044 13.0 1.1 1.5 8.0 0.1 2.1 2 0 0 2 2 2 0 Thi4 family DAO PF01266.24 gi|14602214|ref|NP_148621.1| - 0.05 13.2 0.1 0.092 12.3 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase LpxI_N PF17930.1 gi|14602214|ref|NP_148621.1| - 0.059 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 LpxI N-terminal domain Gp_dh_N PF00044.24 gi|14602214|ref|NP_148621.1| - 0.088 13.2 0.1 0.28 11.5 0.1 1.9 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|14602214|ref|NP_148621.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Rossmann-like domain Transketolase_C PF02780.20 gi|14602214|ref|NP_148621.1| - 0.19 11.6 1.4 21 5.0 0.1 3.0 3 0 0 3 3 3 0 Transketolase, C-terminal domain FAD_binding_2 PF00890.24 gi|14602214|ref|NP_148621.1| - 0.19 10.8 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Enolase_C PF00113.22 gi|14602076|ref|NP_148623.1| - 3.2e-106 354.9 0.0 4.1e-106 354.5 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|14602076|ref|NP_148623.1| - 8.1e-45 152.2 0.0 1.4e-44 151.5 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|14602076|ref|NP_148623.1| - 1.2e-08 34.9 0.1 1.8e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|14602076|ref|NP_148623.1| - 0.023 13.9 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Peripla_BP_4 PF13407.6 gi|14602076|ref|NP_148623.1| - 0.055 13.0 0.2 0.2 11.2 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein domain PBP_like_2 PF12849.7 gi|118431878|ref|YP_874947.1| - 0.02 14.6 0.0 0.021 14.5 0.0 1.0 1 0 0 1 1 1 0 PBP superfamily domain Ldh_2 PF02615.14 gi|118431878|ref|YP_874947.1| - 0.02 14.0 0.0 0.026 13.7 0.0 1.1 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase DUF4504 PF14953.6 gi|118431878|ref|YP_874947.1| - 0.04 13.3 0.0 0.048 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4504) TusA PF01206.17 gi|118431878|ref|YP_874947.1| - 0.16 11.8 0.0 0.85 9.5 0.0 1.9 1 1 1 2 2 2 0 Sulfurtransferase TusA ETF_QO PF05187.13 gi|118431879|ref|NP_148624.2| - 3.9e-05 23.7 0.1 5.3e-05 23.3 0.1 1.3 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S tRNA-synt_1b PF00579.25 gi|118431880|ref|NP_148625.2| - 5.4e-41 140.8 0.0 7.5e-41 140.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) PKS_DE PF18369.1 gi|118431880|ref|NP_148625.2| - 0.037 14.6 0.0 0.095 13.3 0.0 1.7 1 0 0 1 1 1 0 Polyketide synthase dimerisation element domain VKOR PF07884.14 gi|118431881|ref|NP_148627.2| - 3e-19 69.4 18.9 3.4e-19 69.2 18.9 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PhoH PF02562.16 gi|118431883|ref|NP_148629.2| - 5.1e-47 160.0 0.0 7.9e-47 159.4 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|118431883|ref|NP_148629.2| - 6e-12 45.2 4.3 5.9e-08 32.4 0.8 2.5 1 1 1 2 2 2 2 KH domain KH_1 PF00013.29 gi|118431883|ref|NP_148629.2| - 8.8e-07 28.7 2.8 0.00021 21.0 0.5 2.7 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|118431883|ref|NP_148629.2| - 5.8e-06 26.3 0.4 0.0002 21.4 0.1 2.4 2 0 0 2 2 2 1 NusA-like KH domain AAA_30 PF13604.6 gi|118431883|ref|NP_148629.2| - 0.00041 20.1 0.0 0.0011 18.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|118431883|ref|NP_148629.2| - 0.0072 16.7 0.0 0.023 15.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|118431883|ref|NP_148629.2| - 0.0073 16.6 0.3 0.044 14.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|118431883|ref|NP_148629.2| - 0.026 14.1 0.0 0.058 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.6 gi|118431883|ref|NP_148629.2| - 0.055 13.4 0.3 15 5.5 0.0 2.6 2 0 0 2 2 2 0 KH domain Methyltr_RsmB-F PF01189.17 gi|118431884|ref|NP_148630.2| - 7.1e-50 169.4 0.0 1.1e-49 168.8 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|118431884|ref|NP_148630.2| - 4.5e-05 23.3 0.0 7.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|118431884|ref|NP_148630.2| - 0.00011 22.3 0.0 0.00021 21.5 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|118431884|ref|NP_148630.2| - 0.00086 20.0 0.0 0.003 18.2 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|118431884|ref|NP_148630.2| - 0.0037 17.7 0.0 0.0087 16.5 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF UPF0020 PF01170.18 gi|118431884|ref|NP_148630.2| - 0.02 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MFS_1 PF07690.16 gi|14602084|ref|NP_148631.1| - 1.1e-30 106.7 57.8 5.6e-23 81.4 36.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|14602084|ref|NP_148631.1| - 8.3e-08 31.5 9.6 0.0011 17.9 3.2 2.4 1 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|14602084|ref|NP_148631.1| - 0.0041 15.6 12.9 0.0084 14.6 4.0 2.3 2 1 0 2 2 2 2 Transmembrane secretion effector LacY_symp PF01306.19 gi|14602084|ref|NP_148631.1| - 0.46 9.2 10.0 0.076 11.8 0.7 3.0 2 1 1 3 3 3 0 LacY proton/sugar symporter CoA_trans PF01144.23 gi|118431885|ref|NP_148633.2| - 6.3e-55 185.9 0.1 2.7e-52 177.3 0.0 2.8 3 0 0 3 3 3 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|118431885|ref|NP_148633.2| - 0.063 11.6 0.0 0.12 10.7 0.0 1.4 1 0 0 1 1 1 0 Malonate decarboxylase, alpha subunit, transporter DUF4038 PF13204.6 gi|118431885|ref|NP_148633.2| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4038) Ribosomal_S25 PF03297.15 gi|14602087|ref|NP_148634.1| - 1.6e-11 44.3 1.0 2.4e-11 43.7 1.0 1.3 1 1 0 1 1 1 1 S25 ribosomal protein GntR PF00392.21 gi|14602087|ref|NP_148634.1| - 0.00058 19.5 1.6 0.0014 18.3 1.6 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_42 PF06224.12 gi|14602087|ref|NP_148634.1| - 0.00087 18.9 0.3 0.00095 18.8 0.3 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain EAP30 PF04157.16 gi|14602087|ref|NP_148634.1| - 0.0014 17.9 0.1 0.0016 17.7 0.1 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_11 PF08279.12 gi|14602087|ref|NP_148634.1| - 0.0044 16.9 0.1 0.0064 16.4 0.1 1.2 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|14602087|ref|NP_148634.1| - 0.0082 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Replic_Relax PF13814.6 gi|14602087|ref|NP_148634.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation AAA_26 PF13500.6 gi|118431886|ref|NP_148635.2| - 0.00079 19.3 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Metallophos PF00149.28 gi|118431887|ref|NP_148636.2| - 3.6e-09 37.4 0.0 5.6e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Cdc6_C PF09079.11 gi|118431888|ref|YP_874948.1| - 0.018 15.0 0.4 0.076 13.0 0.2 1.9 1 1 1 2 2 2 0 CDC6, C terminal winged helix domain HTH_36 PF13730.6 gi|118431888|ref|YP_874948.1| - 0.095 12.7 0.0 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 gi|118431889|ref|NP_148637.2| - 3.7e-100 331.6 0.0 6.1e-51 172.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|118431889|ref|NP_148637.2| - 1e-36 124.4 5.6 1.1e-19 69.9 1.4 2.9 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|118431889|ref|NP_148637.2| - 9.1e-34 115.5 2.9 4.2e-33 113.4 2.5 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|118431889|ref|NP_148637.2| - 2.9e-16 59.6 0.1 1.6e-07 31.2 0.0 3.4 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|118431889|ref|NP_148637.2| - 2.6e-14 53.9 0.6 2.4e-06 28.0 0.0 3.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|118431889|ref|NP_148637.2| - 3.5e-14 53.3 0.0 3.9e-07 30.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|118431889|ref|NP_148637.2| - 1.3e-13 50.5 3.3 1.3e-13 50.5 3.3 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|118431889|ref|NP_148637.2| - 3.7e-11 43.4 0.6 0.00044 20.5 0.0 4.3 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|118431889|ref|NP_148637.2| - 8.9e-11 42.1 0.0 0.00027 21.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_5 PF07728.14 gi|118431889|ref|NP_148637.2| - 4.5e-10 39.7 2.6 0.001 19.1 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|118431889|ref|NP_148637.2| - 1.2e-09 37.8 2.2 0.00099 18.4 0.0 3.1 4 0 0 4 4 4 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|118431889|ref|NP_148637.2| - 1.9e-09 37.7 0.0 0.00031 20.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|118431889|ref|NP_148637.2| - 4.4e-09 36.2 0.5 9.3e-05 22.4 0.0 3.3 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.17 gi|118431889|ref|NP_148637.2| - 4.3e-08 33.1 0.0 0.011 15.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|118431889|ref|NP_148637.2| - 1.7e-07 31.8 0.0 0.012 16.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|118431889|ref|NP_148637.2| - 2.6e-07 30.6 0.0 0.003 17.3 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|118431889|ref|NP_148637.2| - 4.6e-07 30.2 0.0 0.038 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|118431889|ref|NP_148637.2| - 7.8e-07 28.7 0.6 0.041 13.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|118431889|ref|NP_148637.2| - 8.1e-07 28.9 0.1 0.083 12.6 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain ATPase PF06745.13 gi|118431889|ref|NP_148637.2| - 1.5e-06 27.7 0.5 0.18 11.1 0.0 3.5 2 1 0 3 3 3 2 KaiC UFD1 PF03152.14 gi|118431889|ref|NP_148637.2| - 1.7e-06 27.6 0.1 1.1e-05 25.0 0.1 2.1 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 RNA_helicase PF00910.22 gi|118431889|ref|NP_148637.2| - 3.7e-06 27.3 0.0 0.063 13.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase ATPase_2 PF01637.18 gi|118431889|ref|NP_148637.2| - 9e-06 25.8 0.1 0.025 14.5 0.1 3.7 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|118431889|ref|NP_148637.2| - 1.3e-05 24.8 0.0 0.12 11.9 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region TsaE PF02367.17 gi|118431889|ref|NP_148637.2| - 2.2e-05 24.5 0.0 0.28 11.2 0.0 2.7 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|118431889|ref|NP_148637.2| - 3.5e-05 23.4 0.4 0.2 11.1 0.1 2.7 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.13 gi|118431889|ref|NP_148637.2| - 7.4e-05 22.0 0.0 0.24 10.5 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|118431889|ref|NP_148637.2| - 0.0001 22.9 0.0 0.56 10.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Parvo_NS1 PF01057.17 gi|118431889|ref|NP_148637.2| - 0.00016 20.8 0.1 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|118431889|ref|NP_148637.2| - 0.00017 20.9 0.0 0.47 9.7 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_3 PF07726.11 gi|118431889|ref|NP_148637.2| - 0.00018 21.4 0.0 0.63 9.9 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|118431889|ref|NP_148637.2| - 0.00018 21.5 0.2 1.4 8.8 0.0 3.4 4 0 0 4 4 3 2 NACHT domain DUF2075 PF09848.9 gi|118431889|ref|NP_148637.2| - 0.00025 20.4 0.0 0.093 12.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|118431889|ref|NP_148637.2| - 0.00075 19.1 8.7 0.32 10.5 1.0 3.9 2 2 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|118431889|ref|NP_148637.2| - 0.0013 18.5 0.3 2.3 7.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|118431889|ref|NP_148637.2| - 0.0021 18.4 1.6 4.8 7.5 0.0 3.3 2 1 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|118431889|ref|NP_148637.2| - 0.0025 17.0 0.0 0.91 8.7 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain AAA_11 PF13086.6 gi|118431889|ref|NP_148637.2| - 0.0029 17.5 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|118431889|ref|NP_148637.2| - 0.0035 17.8 0.0 3 8.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|118431889|ref|NP_148637.2| - 0.0056 16.6 0.6 12 5.7 0.0 4.0 2 1 0 3 3 3 0 NTPase Sigma54_activ_2 PF14532.6 gi|118431889|ref|NP_148637.2| - 0.0074 16.4 0.0 3.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Bac_DnaA PF00308.18 gi|118431889|ref|NP_148637.2| - 0.01 15.7 0.0 1.1 9.1 0.0 2.8 2 1 0 2 2 2 0 Bacterial dnaA protein Guanylate_kin PF00625.21 gi|118431889|ref|NP_148637.2| - 0.011 15.4 0.2 55 3.4 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase IPT PF01745.16 gi|118431889|ref|NP_148637.2| - 0.018 14.5 0.1 2.2 7.6 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase AFG1_ATPase PF03969.16 gi|118431889|ref|NP_148637.2| - 0.022 13.6 0.0 2.8 6.7 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Cytidylate_kin PF02224.18 gi|118431889|ref|NP_148637.2| - 0.034 13.9 0.8 13 5.4 0.0 3.1 3 0 0 3 3 3 0 Cytidylate kinase Rad17 PF03215.15 gi|118431889|ref|NP_148637.2| - 0.06 13.3 0.0 10 6.0 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|118431889|ref|NP_148637.2| - 0.066 12.9 0.0 3.8 7.2 0.0 2.6 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|118431889|ref|NP_148637.2| - 0.083 12.6 0.0 14 5.5 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|118431889|ref|NP_148637.2| - 0.083 12.6 0.0 11 5.8 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation EF1_GNE PF00736.19 gi|118431890|ref|NP_148638.2| - 1.9e-18 66.4 0.7 2.1e-18 66.3 0.7 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|118431891|ref|YP_874949.1| - 3.7e-10 39.6 12.9 1.3e-07 31.5 7.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|118431891|ref|YP_874949.1| - 8.7e-05 22.1 18.0 0.00063 19.4 2.7 3.0 2 2 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|118431891|ref|YP_874949.1| - 0.00067 19.7 2.2 0.00067 19.7 2.2 2.8 1 1 1 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|118431891|ref|YP_874949.1| - 0.0012 18.7 11.5 0.016 15.1 1.2 2.4 1 1 1 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|118431891|ref|YP_874949.1| - 0.0015 18.5 12.9 0.0085 16.1 1.4 2.3 1 1 1 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|118431891|ref|YP_874949.1| - 0.0022 17.3 15.9 0.32 10.5 0.5 3.9 4 0 0 4 4 4 2 zinc-ribbon domain DUF2072 PF09845.9 gi|118431891|ref|YP_874949.1| - 0.0024 18.2 2.3 0.0024 18.2 2.3 2.1 1 1 1 2 2 2 1 Zn-ribbon containing protein zf-MYND PF01753.18 gi|118431891|ref|YP_874949.1| - 0.0036 17.4 6.8 0.071 13.2 0.2 2.2 1 1 1 2 2 2 1 MYND finger zf-CHY PF05495.12 gi|118431891|ref|YP_874949.1| - 0.0077 16.7 7.6 0.13 12.8 8.0 2.0 1 1 1 2 2 2 1 CHY zinc finger HypA PF01155.19 gi|118431891|ref|YP_874949.1| - 0.016 15.2 10.8 0.036 14.1 0.4 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|118431891|ref|YP_874949.1| - 0.035 14.2 2.8 0.035 14.2 2.8 2.4 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like HscB_4_cys PF18256.1 gi|118431891|ref|YP_874949.1| - 0.039 13.8 2.9 0.039 13.8 2.9 3.2 1 1 3 4 4 3 0 Co-chaperone HscB tetracysteine metal binding motif zf_UBZ PF18439.1 gi|118431891|ref|YP_874949.1| - 0.049 13.2 12.8 1.7 8.3 0.1 3.9 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger C1_2 PF03107.16 gi|118431891|ref|YP_874949.1| - 0.08 13.3 10.6 0.99 9.8 7.2 2.2 1 1 1 2 2 2 0 C1 domain PolC_DP2 PF03833.13 gi|118431891|ref|YP_874949.1| - 0.11 10.4 3.2 0.11 10.3 3.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.6 gi|118431891|ref|YP_874949.1| - 0.13 12.2 14.9 0.35 10.8 3.3 3.7 3 1 0 3 3 3 0 Nudix N-terminal zinc_ribbon_9 PF14369.6 gi|118431891|ref|YP_874949.1| - 0.13 12.5 0.5 0.13 12.5 0.5 2.7 1 1 1 2 2 2 0 zinc-ribbon zf-RING_7 PF02591.15 gi|118431891|ref|YP_874949.1| - 0.14 12.4 19.0 0.24 11.6 0.2 3.6 3 1 0 3 3 3 0 C4-type zinc ribbon domain zf-C2HC5 PF06221.13 gi|118431891|ref|YP_874949.1| - 0.14 12.2 9.3 0.21 11.6 2.5 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type NOB1_Zn_bind PF08772.11 gi|118431891|ref|YP_874949.1| - 0.15 12.2 10.0 0.049 13.8 3.5 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|118431891|ref|YP_874949.1| - 0.21 11.1 19.0 1.6 8.3 0.2 3.5 1 1 2 3 3 3 0 TFIIB zinc-binding Desulfoferrod_N PF06397.12 gi|118431891|ref|YP_874949.1| - 0.28 10.8 10.0 0.46 10.2 0.0 3.7 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|118431891|ref|YP_874949.1| - 0.49 10.4 22.1 10 6.2 0.2 3.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain NRDD PF13597.6 gi|118431891|ref|YP_874949.1| - 0.52 9.0 10.0 1.1 8.0 3.0 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase DUF1272 PF06906.11 gi|118431891|ref|YP_874949.1| - 0.53 10.4 13.2 23 5.1 13.2 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DUF2752 PF10825.8 gi|118431891|ref|YP_874949.1| - 0.56 10.3 0.2 0.56 10.3 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Rubredoxin_2 PF18073.1 gi|118431891|ref|YP_874949.1| - 0.6 9.9 19.5 1.4 8.7 0.2 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain Zn_Tnp_IS91 PF14319.6 gi|118431891|ref|YP_874949.1| - 0.67 10.0 9.9 1 9.4 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain zinc_ribbon_10 PF10058.9 gi|118431891|ref|YP_874949.1| - 0.67 9.7 15.9 3.1 7.6 0.4 3.8 1 1 3 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|118431891|ref|YP_874949.1| - 0.74 9.8 18.5 2.6 8.0 0.5 4.0 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zf-HIT PF04438.16 gi|118431891|ref|YP_874949.1| - 1.5 8.8 18.8 0.3 11.0 6.8 3.1 1 1 1 2 2 2 0 HIT zinc finger Ribosomal_L37ae PF01780.19 gi|118431891|ref|YP_874949.1| - 2 8.6 10.7 1.2 9.3 1.9 3.0 1 1 2 3 3 3 0 Ribosomal L37ae protein family zinc_ribbon_4 PF13717.6 gi|118431891|ref|YP_874949.1| - 2.2 8.3 17.8 15 5.6 0.3 4.1 3 1 0 4 4 4 0 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|118431891|ref|YP_874949.1| - 2.4 8.0 10.3 10 6.1 1.4 3.6 2 1 2 4 4 4 0 zinc-finger of acetyl-transferase ESCO zf-TFIIB PF13453.6 gi|118431891|ref|YP_874949.1| - 3 7.2 15.4 31 4.0 0.1 3.6 2 1 1 3 3 3 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.10 gi|118431891|ref|YP_874949.1| - 3.4 7.5 13.7 2.2 8.1 3.2 3.6 1 1 1 2 2 2 0 A2L zinc ribbon domain ADK_lid PF05191.14 gi|118431891|ref|YP_874949.1| - 4.5 7.3 11.0 20 5.3 0.1 3.8 3 1 1 4 4 4 0 Adenylate kinase, active site lid zf-ACC PF17848.1 gi|118431891|ref|YP_874949.1| - 6.8 6.9 14.9 21 5.3 0.4 3.9 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|118431891|ref|YP_874949.1| - 7.1 6.8 13.6 3.6 7.8 2.0 2.7 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|118431891|ref|YP_874949.1| - 7.8 7.1 15.1 5.4 7.6 0.4 3.8 2 1 2 4 4 4 0 Zinc-finger double domain HalOD2 PF18547.1 gi|118431891|ref|YP_874949.1| - 8.3 6.4 18.2 11 6.0 0.6 4.0 1 1 3 4 4 4 0 Halobacterial output domain 2 zf-B_box PF00643.24 gi|118431891|ref|YP_874949.1| - 9.5 6.5 10.4 1.4 9.1 1.7 2.6 1 1 0 2 2 2 0 B-box zinc finger DUF1464 PF07318.12 gi|118431892|ref|NP_148640.2| - 2.1e-125 418.2 0.0 2.4e-125 418.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) PBD PF00786.28 gi|118431892|ref|NP_148640.2| - 0.21 12.0 0.0 0.38 11.1 0.0 1.4 1 0 0 1 1 1 0 P21-Rho-binding domain His_Phos_1 PF00300.22 gi|118431893|ref|NP_148641.2| - 8e-12 45.3 0.0 1.2e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) SpoIIM PF01944.17 gi|118431894|ref|NP_148642.2| - 2.5e-22 79.6 16.4 3.6e-22 79.1 16.4 1.3 1 0 0 1 1 1 1 Stage II sporulation protein M Arteri_Gl PF00951.18 gi|118431894|ref|NP_148642.2| - 2.6 7.8 6.4 0.71 9.7 1.8 1.8 1 1 1 2 2 2 0 Arterivirus GL envelope glycoprotein GCD14 PF08704.10 gi|118431895|ref|NP_148643.2| - 4.1e-21 75.8 0.0 5.2e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|118431895|ref|NP_148643.2| - 4.9e-08 33.0 0.0 7.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|118431895|ref|NP_148643.2| - 3.9e-06 26.7 0.0 5e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|118431895|ref|NP_148643.2| - 2.4e-05 23.6 0.0 3.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.6 gi|118431895|ref|NP_148643.2| - 3.9e-05 24.3 0.0 5.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|118431895|ref|NP_148643.2| - 0.0012 19.4 0.0 0.002 18.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|118431895|ref|NP_148643.2| - 0.0073 17.3 0.0 0.012 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|118431895|ref|NP_148643.2| - 0.031 14.0 0.0 0.088 12.5 0.0 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltr_RsmB-F PF01189.17 gi|118431895|ref|NP_148643.2| - 0.083 12.5 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|118431895|ref|NP_148643.2| - 0.087 13.6 0.0 0.13 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CBS PF00571.28 gi|118431896|ref|NP_148644.2| - 1.7e-32 111.7 9.8 3.8e-17 62.5 0.7 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|118431896|ref|NP_148644.2| - 0.0092 16.2 0.0 1.2 9.5 0.0 2.5 2 0 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain FTR1 PF03239.14 gi|118431897|ref|NP_148645.2| - 1.3e-64 218.3 20.6 1.5e-64 218.1 20.6 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family PFOR_II PF17147.4 gi|118431897|ref|NP_148645.2| - 0.057 13.7 0.0 0.72 10.2 0.0 2.1 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II Pneumo_ncap PF03246.13 gi|118431897|ref|NP_148645.2| - 0.09 11.5 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein Radical_SAM PF04055.21 gi|118431899|ref|NP_148647.2| - 1.9e-15 57.7 0.0 2.8e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HIT PF01230.23 gi|118431900|ref|NP_148648.2| - 7.9e-22 77.8 0.0 2.3e-21 76.3 0.0 1.6 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|118431900|ref|NP_148648.2| - 7.6e-12 45.7 0.0 1.3e-11 45.0 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|118431900|ref|NP_148648.2| - 0.0038 17.1 0.0 0.0053 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Thioredoxin PF00085.20 gi|118431901|ref|NP_148649.2| - 7.9e-14 51.5 0.0 1.2e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|118431901|ref|NP_148649.2| - 6e-10 39.6 0.2 3.5e-09 37.1 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|118431901|ref|NP_148649.2| - 0.0002 21.4 0.0 0.00042 20.3 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|118431901|ref|NP_148649.2| - 0.0046 17.1 0.1 0.013 15.7 0.0 1.9 2 0 0 2 2 2 1 Glutaredoxin TraF PF13728.6 gi|118431901|ref|NP_148649.2| - 0.0047 16.8 0.0 0.006 16.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DSBA PF01323.20 gi|118431901|ref|NP_148649.2| - 0.0064 16.3 0.3 0.23 11.2 0.1 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Redoxin PF08534.10 gi|118431901|ref|NP_148649.2| - 0.0095 15.7 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_4 PF13462.6 gi|118431901|ref|NP_148649.2| - 0.06 13.5 0.5 2.5 8.2 0.4 2.1 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_7 PF13899.6 gi|118431901|ref|NP_148649.2| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like MarC PF01914.17 gi|14602102|ref|NP_148650.1| - 4.4e-32 111.1 14.1 6e-32 110.7 14.1 1.2 1 0 0 1 1 1 1 MarC family integral membrane protein Kinocilin PF15033.6 gi|14602102|ref|NP_148650.1| - 5.2 6.7 8.2 0.48 10.1 1.1 2.2 2 0 0 2 2 2 0 Kinocilin protein 4HBT PF03061.22 gi|118431902|ref|NP_148651.2| - 1.8e-06 28.2 0.1 2.5e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily MMPL PF03176.15 gi|118431903|ref|NP_148652.2| - 3.2e-53 180.8 30.6 6.3e-28 97.7 11.7 2.4 2 0 0 2 2 2 2 MMPL family MotA_ExbB PF01618.16 gi|118431903|ref|NP_148652.2| - 0.13 12.0 0.1 0.13 12.0 0.1 3.1 3 0 0 3 3 3 0 MotA/TolQ/ExbB proton channel family Amidohydro_2 PF04909.14 gi|118431904|ref|NP_148654.2| - 1.1e-27 97.6 0.1 1.4e-27 97.2 0.1 1.3 1 1 0 1 1 1 1 Amidohydrolase DUF5411 PF17424.2 gi|118431904|ref|NP_148654.2| - 0.055 13.4 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5411) adh_short_C2 PF13561.6 gi|118431905|ref|NP_148655.2| - 1.2e-60 205.0 0.1 1.5e-60 204.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|118431905|ref|NP_148655.2| - 3.4e-55 186.5 0.1 4e-55 186.3 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|118431905|ref|NP_148655.2| - 2.5e-13 50.3 0.1 3.8e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|118431905|ref|NP_148655.2| - 0.00084 18.9 0.0 0.002 17.7 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|118431905|ref|NP_148655.2| - 0.0086 15.5 0.0 0.016 14.6 0.0 1.6 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) TrmB PF01978.19 gi|14602108|ref|NP_148656.1| - 3.4e-09 36.5 1.8 9.3e-09 35.1 0.2 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|14602108|ref|NP_148656.1| - 1.4e-06 28.1 0.1 1.4e-06 28.1 0.1 1.9 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|14602108|ref|NP_148656.1| - 3.4e-06 26.8 0.4 1.4e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|14602108|ref|NP_148656.1| - 3.9e-05 24.0 0.0 7.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_28 PF13518.6 gi|14602108|ref|NP_148656.1| - 3.9e-05 23.7 2.9 0.002 18.2 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|14602108|ref|NP_148656.1| - 4.9e-05 23.1 0.1 0.00029 20.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|14602108|ref|NP_148656.1| - 0.0001 22.3 1.1 0.00047 20.2 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|14602108|ref|NP_148656.1| - 0.00019 20.9 2.8 0.00038 20.0 0.1 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|14602108|ref|NP_148656.1| - 0.002 18.1 1.2 0.0071 16.3 0.1 2.2 2 1 0 2 2 2 1 Winged helix-turn helix PadR PF03551.14 gi|14602108|ref|NP_148656.1| - 0.0047 16.8 0.2 0.022 14.7 0.1 2.1 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family PaaX PF07848.12 gi|14602108|ref|NP_148656.1| - 0.0048 17.1 1.7 0.0055 16.9 0.5 1.7 2 0 0 2 2 1 1 PaaX-like protein MarR PF01047.22 gi|14602108|ref|NP_148656.1| - 0.0054 16.6 0.0 0.015 15.2 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|14602108|ref|NP_148656.1| - 0.0059 17.1 0.6 0.015 15.8 0.2 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain ABC_tran_CTD PF16326.5 gi|14602108|ref|NP_148656.1| - 0.0078 16.4 1.3 0.014 15.6 1.3 1.4 1 0 0 1 1 1 1 ABC transporter C-terminal domain Sulfolobus_pRN PF05584.11 gi|14602108|ref|NP_148656.1| - 0.0079 16.2 0.5 0.018 15.1 0.1 1.7 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein VPS11_C PF12451.8 gi|14602108|ref|NP_148656.1| - 0.016 15.4 0.1 0.027 14.7 0.1 1.4 1 0 0 1 1 1 0 Vacuolar protein sorting protein 11 C terminal ATG16 PF08614.11 gi|14602108|ref|NP_148656.1| - 0.023 14.9 1.3 0.03 14.5 1.3 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) SlyX PF04102.12 gi|14602108|ref|NP_148656.1| - 0.025 15.2 0.3 0.052 14.2 0.3 1.5 1 0 0 1 1 1 0 SlyX AbiEi_4 PF13338.6 gi|14602108|ref|NP_148656.1| - 0.027 14.6 0.4 0.11 12.6 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_23 PF13384.6 gi|14602108|ref|NP_148656.1| - 0.03 14.1 1.5 5.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain EAP30 PF04157.16 gi|14602108|ref|NP_148656.1| - 0.038 13.3 1.3 0.58 9.4 0.1 2.0 1 1 1 2 2 2 0 EAP30/Vps36 family DivIVA PF05103.13 gi|14602108|ref|NP_148656.1| - 0.042 13.9 0.4 0.065 13.3 0.4 1.2 1 0 0 1 1 1 0 DivIVA protein DUF4423 PF14394.6 gi|14602108|ref|NP_148656.1| - 0.046 13.4 0.1 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Atg14 PF10186.9 gi|14602108|ref|NP_148656.1| - 0.064 12.3 0.1 0.082 12.0 0.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CCDC-167 PF15188.6 gi|14602108|ref|NP_148656.1| - 0.067 13.5 0.6 0.14 12.5 0.6 1.7 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 TFIIE_alpha PF02002.17 gi|14602108|ref|NP_148656.1| - 0.1 12.5 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit FmiP_Thoc5 PF09766.9 gi|14602108|ref|NP_148656.1| - 0.11 11.7 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 HTH_45 PF14947.6 gi|14602108|ref|NP_148656.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SMC_Nse1 PF07574.13 gi|14602108|ref|NP_148656.1| - 0.13 12.1 0.1 0.31 10.9 0.1 1.7 1 1 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex HTH_36 PF13730.6 gi|14602108|ref|NP_148656.1| - 0.18 11.8 0.0 0.49 10.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain 2-Hacid_dh_C PF02826.19 gi|118431906|ref|NP_148658.2| - 4.6e-58 195.5 0.0 6.1e-58 195.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|118431906|ref|NP_148658.2| - 8.6e-27 93.4 0.0 9.8e-27 93.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|118431906|ref|NP_148658.2| - 5.2e-05 23.5 0.0 8.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AbiEi_4 PF13338.6 gi|118431906|ref|NP_148658.2| - 0.019 15.1 2.2 0.4 10.9 0.1 2.8 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin TrkA_N PF02254.18 gi|118431906|ref|NP_148658.2| - 0.034 14.4 0.1 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain IlvN PF07991.12 gi|118431906|ref|NP_148658.2| - 0.037 13.6 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|118431906|ref|NP_148658.2| - 0.042 14.7 0.0 0.16 12.8 0.0 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.24 gi|118431906|ref|NP_148658.2| - 0.17 12.3 0.0 2 8.8 0.0 2.2 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TPP_enzyme_N PF02776.18 gi|14602111|ref|NP_148659.1| - 2.6e-46 157.4 0.2 6.2e-46 156.1 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|14602111|ref|NP_148659.1| - 2.1e-28 99.0 0.0 5.1e-28 97.8 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|14602111|ref|NP_148659.1| - 1e-21 77.1 0.0 2.1e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain ABC2_membrane PF01061.24 gi|14602112|ref|NP_148660.1| - 8.1e-16 58.1 14.2 1.1e-15 57.6 14.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|14602112|ref|NP_148660.1| - 3.4e-09 36.3 16.6 4.2e-09 36.0 16.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|14602112|ref|NP_148660.1| - 2.3e-06 27.1 12.4 2.3e-06 27.1 12.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.11 gi|14602112|ref|NP_148660.1| - 0.00011 22.1 4.3 0.00018 21.3 4.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein OATP PF03137.20 gi|14602112|ref|NP_148660.1| - 0.017 13.4 1.1 0.027 12.8 1.1 1.2 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family ABC2_membrane PF01061.24 gi|14602113|ref|NP_148661.1| - 5.5e-13 48.8 15.8 5.5e-13 48.8 15.8 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|14602113|ref|NP_148661.1| - 0.17 11.0 22.6 2.3 7.2 22.6 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|14602114|ref|NP_148662.1| - 4.8e-26 91.9 0.0 8.3e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14602114|ref|NP_148662.1| - 2.1e-12 47.5 1.0 9.2e-07 29.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|14602114|ref|NP_148662.1| - 7.2e-07 29.8 0.0 1.8e-06 28.6 0.0 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|14602114|ref|NP_148662.1| - 9.6e-05 22.3 0.0 0.31 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|14602114|ref|NP_148662.1| - 0.00013 21.6 0.1 0.00025 20.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|14602114|ref|NP_148662.1| - 0.0026 18.3 0.0 0.0041 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|14602114|ref|NP_148662.1| - 0.0029 17.5 0.4 0.55 10.1 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|14602114|ref|NP_148662.1| - 0.0054 17.1 0.1 0.0096 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain WIYLD PF10440.9 gi|14602114|ref|NP_148662.1| - 0.052 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain AAA PF00004.29 gi|14602114|ref|NP_148662.1| - 0.056 13.9 0.0 0.21 12.0 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|14602114|ref|NP_148662.1| - 0.078 13.2 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|14602114|ref|NP_148662.1| - 0.11 12.4 0.1 0.25 11.2 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 gi|14602114|ref|NP_148662.1| - 0.12 12.3 0.1 1.4 8.8 0.1 2.2 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.6 gi|14602114|ref|NP_148662.1| - 0.13 12.8 0.0 0.29 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|14602114|ref|NP_148662.1| - 0.2 11.2 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|14602114|ref|NP_148662.1| - 0.21 11.6 0.1 0.44 10.5 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|14602114|ref|NP_148662.1| - 0.24 11.1 0.4 1.2 8.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain HxlR PF01638.17 gi|118431907|ref|NP_148663.2| - 7.3e-24 83.4 0.1 9.2e-24 83.1 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|118431907|ref|NP_148663.2| - 0.026 15.0 0.0 0.042 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|118431907|ref|NP_148663.2| - 0.085 12.7 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|118431907|ref|NP_148663.2| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Glyoxalase PF00903.25 gi|118431908|ref|NP_148664.2| - 5.1e-12 46.1 0.0 3.2e-05 24.1 0.0 2.6 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|118431908|ref|NP_148664.2| - 7.3e-06 26.7 0.0 0.00055 20.7 0.0 2.8 2 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|118431908|ref|NP_148664.2| - 0.0027 18.0 0.0 0.86 9.9 0.0 3.0 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amdase PF17645.1 gi|118431909|ref|NP_148665.2| - 2.3e-36 125.5 0.0 2.7e-36 125.2 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|118431909|ref|NP_148665.2| - 3.7e-13 49.9 0.0 6e-13 49.2 0.0 1.4 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|118431909|ref|NP_148665.2| - 0.0037 16.7 0.0 0.096 12.1 0.0 2.4 1 1 1 2 2 2 1 AroM protein Peripla_BP_6 PF13458.6 gi|118431910|ref|NP_148666.2| - 3.8e-55 187.9 0.2 4.5e-55 187.7 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|118431910|ref|NP_148666.2| - 1e-20 74.2 0.0 1.7e-20 73.5 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|118431910|ref|NP_148666.2| - 1.7e-19 70.1 0.3 7.4e-18 64.7 0.3 2.8 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.13 gi|118431910|ref|NP_148666.2| - 0.00022 20.2 0.1 0.00035 19.5 0.1 1.3 1 0 0 1 1 1 1 LppC putative lipoprotein BPD_transp_2 PF02653.16 gi|118431911|ref|NP_148667.2| - 3.2e-39 134.7 47.0 3.7e-39 134.5 47.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component NCE101 PF11654.8 gi|118431911|ref|NP_148667.2| - 1.5 8.6 3.9 0.62 9.8 0.2 2.4 2 0 0 2 2 2 0 Non-classical export protein 1 BPD_transp_2 PF02653.16 gi|118431912|ref|NP_148668.2| - 7e-34 117.2 34.1 8.2e-34 117.0 34.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|118431913|ref|NP_148669.2| - 4.2e-27 95.3 0.0 5.4e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|118431913|ref|NP_148669.2| - 5e-09 35.9 0.1 1.3e-08 34.6 0.1 1.8 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|118431913|ref|NP_148669.2| - 1.6e-07 31.4 1.4 0.00021 21.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ATP-synt_ab PF00006.25 gi|118431913|ref|NP_148669.2| - 0.0013 18.4 0.0 0.0016 18.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|118431913|ref|NP_148669.2| - 0.0025 18.3 0.3 0.0054 17.3 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|118431913|ref|NP_148669.2| - 0.0028 17.3 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|118431913|ref|NP_148669.2| - 0.003 17.6 0.8 0.019 15.1 0.8 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.29 gi|118431913|ref|NP_148669.2| - 0.0069 16.8 0.2 0.32 11.4 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|118431913|ref|NP_148669.2| - 0.018 14.5 0.9 1.9 7.9 0.2 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|118431913|ref|NP_148669.2| - 0.024 15.0 0.0 0.034 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain KdpD PF02702.17 gi|118431913|ref|NP_148669.2| - 0.036 13.5 0.2 0.046 13.2 0.2 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain IstB_IS21 PF01695.17 gi|118431913|ref|NP_148669.2| - 0.037 13.8 0.3 0.65 9.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|118431913|ref|NP_148669.2| - 0.055 13.7 1.7 8.9 6.6 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|118431913|ref|NP_148669.2| - 0.13 12.0 0.0 0.24 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|118431913|ref|NP_148669.2| - 0.16 11.9 0.2 0.37 10.7 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|118431913|ref|NP_148669.2| - 0.33 10.9 2.1 3.8 7.4 0.1 2.5 1 1 1 2 2 2 0 NTPase ABC_tran PF00005.27 gi|14602122|ref|NP_148670.1| - 1.1e-30 107.0 0.0 1.4e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|14602122|ref|NP_148670.1| - 3.2e-08 33.7 2.8 0.0024 17.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_19 PF13245.6 gi|14602122|ref|NP_148670.1| - 0.0018 18.6 0.3 0.0065 16.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|14602122|ref|NP_148670.1| - 0.013 15.2 0.1 0.031 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|14602122|ref|NP_148670.1| - 0.038 13.7 0.1 0.065 13.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain MukB PF04310.12 gi|14602122|ref|NP_148670.1| - 0.055 13.3 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal SRP54 PF00448.22 gi|14602122|ref|NP_148670.1| - 0.063 12.9 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Hydantoinase_A PF01968.18 gi|118431914|ref|NP_148671.2| - 7.7e-104 347.0 0.2 6.6e-102 340.7 0.0 2.1 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|118431914|ref|NP_148671.2| - 5.6e-49 166.3 0.0 1.6e-48 164.8 0.0 1.8 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|118431914|ref|NP_148671.2| - 0.01 15.4 0.0 1 8.8 0.0 2.5 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|118431914|ref|NP_148671.2| - 0.019 13.6 0.8 1.3 7.5 0.1 2.1 2 0 0 2 2 2 0 MutL protein DUF294 PF03445.13 gi|118431914|ref|NP_148671.2| - 0.12 12.2 0.0 0.7 9.7 0.0 2.2 3 0 0 3 3 3 0 Putative nucleotidyltransferase DUF294 FtsA PF14450.6 gi|118431914|ref|NP_148671.2| - 0.2 12.1 0.2 0.88 10.0 0.0 2.1 2 0 0 2 2 2 0 Cell division protein FtsA Hydantoinase_B PF02538.14 gi|118431915|ref|NP_148673.2| - 6.8e-186 618.7 2.0 7.6e-186 618.5 2.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Thioredox_DsbH PF03190.15 gi|118431916|ref|NP_148674.2| - 4.2e-62 208.9 0.0 6.9e-62 208.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|118431916|ref|NP_148674.2| - 3.8e-11 43.0 0.0 6.8e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like C5-epim_C PF06662.13 gi|118431916|ref|NP_148674.2| - 0.038 13.5 0.0 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus DUF998 PF06197.13 gi|118431917|ref|NP_148675.2| - 5.1e-28 97.9 27.2 5.8e-28 97.8 27.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Herpes_UL49_5 PF05702.11 gi|118431917|ref|NP_148675.2| - 0.19 11.8 2.8 0.33 11.1 0.4 2.4 2 0 0 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein EamA PF00892.20 gi|118431918|ref|NP_148677.2| - 1.2e-21 77.3 40.4 2.6e-13 50.3 18.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF2198 PF09964.9 gi|118431918|ref|NP_148677.2| - 0.038 14.1 6.2 1.7 8.8 0.4 3.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) Na_H_antiporter PF03553.14 gi|14602130|ref|NP_148678.1| - 3.9e-96 321.9 25.1 3.9e-96 321.9 25.1 2.5 1 1 1 2 2 2 2 Na+/H+ antiporter family tRNA_edit PF04073.15 gi|118431919|ref|NP_148681.2| - 2.6e-30 105.0 0.1 3.1e-30 104.8 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HTH_17 PF12728.7 gi|118431919|ref|NP_148681.2| - 0.043 14.0 1.5 0.1 12.8 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain DctM PF06808.12 gi|118431920|ref|NP_148683.2| - 1.1e-93 314.3 49.7 1.1e-93 314.3 49.7 2.3 3 0 0 3 3 3 1 Tripartite ATP-independent periplasmic transporter, DctM component YfzA PF14118.6 gi|118431920|ref|NP_148683.2| - 0.21 12.0 2.2 0.52 10.8 0.7 2.5 2 0 0 2 2 2 0 YfzA-like protein GPHR_N PF12537.8 gi|118431920|ref|NP_148683.2| - 0.52 10.4 5.8 0.48 10.5 0.7 3.1 3 0 0 3 3 3 0 The Golgi pH Regulator (GPHR) Family N-terminal NMT1_3 PF16868.5 gi|118431921|ref|NP_148684.2| - 1.8e-17 63.7 0.0 2.2e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family TrbC PF04956.13 gi|118431921|ref|NP_148684.2| - 0.051 13.8 0.3 0.1 12.8 0.3 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family IGPS PF00218.21 gi|14602137|ref|NP_148685.1| - 7.3e-52 176.0 0.0 9.7e-52 175.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|14602137|ref|NP_148685.1| - 0.00017 20.9 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|14602137|ref|NP_148685.1| - 0.00022 20.8 0.0 0.00038 20.0 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|14602137|ref|NP_148685.1| - 0.00027 20.2 0.0 0.0021 17.3 0.0 2.0 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|14602137|ref|NP_148685.1| - 0.015 14.3 0.2 0.044 12.8 0.0 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PA PF02225.22 gi|14602137|ref|NP_148685.1| - 0.016 15.2 0.2 0.65 10.1 0.0 2.3 1 1 0 2 2 2 0 PA domain ThiG PF05690.14 gi|14602137|ref|NP_148685.1| - 0.022 14.1 0.1 0.067 12.5 0.0 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|14602137|ref|NP_148685.1| - 0.028 13.4 0.0 0.056 12.4 0.0 1.5 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Dus PF01207.17 gi|14602137|ref|NP_148685.1| - 0.079 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) PRAI PF00697.22 gi|14602138|ref|NP_148686.1| - 5.3e-10 39.4 0.0 2.6e-09 37.1 0.0 1.9 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.25 gi|14602139|ref|NP_148687.1| - 2.1e-47 161.9 1.5 2.7e-47 161.6 1.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|14602140|ref|NP_148688.1| - 2.2e-23 82.4 0.0 3.4e-23 81.8 0.0 1.2 1 1 0 1 1 1 1 Tryptophan synthase alpha chain NanE PF04131.14 gi|14602140|ref|NP_148688.1| - 0.0011 18.1 0.0 0.0017 17.6 0.0 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|14602140|ref|NP_148688.1| - 0.002 17.7 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 PcrB family TMP-TENI PF02581.17 gi|14602140|ref|NP_148688.1| - 0.034 13.5 0.0 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase His_biosynth PF00977.21 gi|14602140|ref|NP_148688.1| - 0.053 13.0 0.0 0.085 12.3 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|14602140|ref|NP_148688.1| - 0.065 12.5 0.1 0.13 11.5 0.1 1.4 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|14602140|ref|NP_148688.1| - 0.086 11.8 0.0 0.13 11.2 0.0 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|14602140|ref|NP_148688.1| - 0.17 11.2 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.21 gi|14602140|ref|NP_148688.1| - 0.18 11.0 0.0 0.4 9.8 0.0 1.5 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Glycos_transf_3 PF00591.21 gi|14602141|ref|NP_148689.1| - 4e-82 275.6 0.5 5.5e-82 275.2 0.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|14602141|ref|NP_148689.1| - 6e-11 42.0 0.0 1.7e-10 40.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.18 gi|118431922|ref|NP_148690.2| - 3.7e-88 295.4 0.0 5e-88 295.0 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|118431922|ref|NP_148690.2| - 0.00037 20.7 0.0 0.069 13.4 0.0 3.1 2 1 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|14602143|ref|NP_148691.1| - 1.4e-51 175.0 0.0 1.7e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|14602143|ref|NP_148691.1| - 5e-12 46.0 0.1 1.7e-11 44.3 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|14602143|ref|NP_148691.1| - 0.066 13.0 0.0 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 DJ-1/PfpI family GATase_3 PF07685.14 gi|14602143|ref|NP_148691.1| - 0.074 12.6 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Molydop_binding PF01568.21 gi|118431923|ref|NP_148692.2| - 7.4e-25 87.1 0.4 1.4e-24 86.3 0.4 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|118431923|ref|NP_148692.2| - 1.2e-23 83.8 0.3 6.5e-10 38.5 0.0 3.4 4 0 0 4 4 4 3 Molybdopterin oxidoreductase Rieske_3 PF18465.1 gi|118431923|ref|NP_148692.2| - 2.5e-13 50.1 0.8 1.8e-10 40.9 0.8 2.9 1 1 0 1 1 1 1 Rieske 3Fe-4S Molybdop_Fe4S4 PF04879.16 gi|118431923|ref|NP_148692.2| - 0.0078 16.2 0.2 0.019 14.9 0.2 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|118431923|ref|NP_148692.2| - 0.0082 16.3 0.0 0.025 14.7 0.0 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Rieske PF00355.26 gi|14602146|ref|NP_148694.1| - 6.2e-13 48.5 0.0 1.4e-12 47.4 0.0 1.6 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|14602146|ref|NP_148694.1| - 0.0061 16.4 4.5 0.012 15.4 4.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|14602146|ref|NP_148694.1| - 0.023 14.0 3.0 0.047 13.1 3.0 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HTH_24 PF13412.6 gi|118431924|ref|NP_148695.2| - 1.3e-11 43.9 0.7 3.5e-11 42.5 1.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|118431924|ref|NP_148695.2| - 4.9e-11 42.3 0.3 9.5e-11 41.4 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|118431924|ref|NP_148695.2| - 0.0042 16.9 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|118431924|ref|NP_148695.2| - 0.0055 16.6 0.0 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|118431924|ref|NP_148695.2| - 0.0083 16.0 0.0 0.023 14.6 0.1 1.7 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 gi|118431924|ref|NP_148695.2| - 0.012 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|118431924|ref|NP_148695.2| - 0.017 15.0 0.0 0.59 10.1 0.0 2.3 2 0 0 2 2 2 0 MarR family RuvB_C PF05491.13 gi|118431924|ref|NP_148695.2| - 0.031 14.1 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Ribosomal_L24e PF01246.20 gi|118431924|ref|NP_148695.2| - 0.046 14.0 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L24e TFIIE_alpha PF02002.17 gi|118431924|ref|NP_148695.2| - 0.091 12.6 0.1 0.2 11.5 0.0 1.5 2 0 0 2 2 2 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|118431924|ref|NP_148695.2| - 0.11 12.9 0.1 0.46 10.9 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator GntR PF00392.21 gi|118431924|ref|NP_148695.2| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|118431924|ref|NP_148695.2| - 0.19 11.8 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AhpC-TSA PF00578.21 gi|118431925|ref|NP_148697.2| - 4.4e-07 29.9 0.0 1.7e-06 27.9 0.0 1.9 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|118431925|ref|NP_148697.2| - 8e-06 26.1 0.1 2e-05 24.8 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|118431925|ref|NP_148697.2| - 1.1e-05 25.3 0.0 9.3e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin Redoxin PF08534.10 gi|118431925|ref|NP_148697.2| - 9.3e-05 22.2 0.0 0.00039 20.2 0.0 1.9 1 1 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|118431925|ref|NP_148697.2| - 0.00046 20.6 0.0 0.00086 19.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GSHPx PF00255.19 gi|118431925|ref|NP_148697.2| - 0.025 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Glutathione peroxidase Glutaredoxin PF00462.24 gi|118431925|ref|NP_148697.2| - 0.033 14.4 0.0 0.073 13.3 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin TraF PF13728.6 gi|118431925|ref|NP_148697.2| - 0.059 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein Hanta_nucleocap PF00846.18 gi|118431925|ref|NP_148697.2| - 0.063 11.7 0.0 0.081 11.4 0.0 1.1 1 0 0 1 1 1 0 Hantavirus nucleocapsid protein Thioredoxin_9 PF14595.6 gi|118431925|ref|NP_148697.2| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin UL11 PF11094.8 gi|118431925|ref|NP_148697.2| - 0.13 12.2 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Membrane-associated tegument protein RHH_1 PF01402.21 gi|118431926|ref|NP_148698.2| - 7.5e-07 28.9 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|118431926|ref|NP_148698.2| - 2.6e-06 27.5 0.1 1.6e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 NikR C terminal nickel binding domain HicB_lk_antitox PF15919.5 gi|118431926|ref|NP_148698.2| - 0.0025 17.9 0.0 0.0044 17.1 0.0 1.3 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system VapB_antitoxin PF09957.9 gi|118431926|ref|NP_148698.2| - 0.0056 16.6 0.0 0.0099 15.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB RHH_8 PF17723.1 gi|118431926|ref|NP_148698.2| - 0.011 15.8 0.1 0.013 15.6 0.1 1.4 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family DAHP_snth_FXD PF18152.1 gi|118431926|ref|NP_148698.2| - 0.017 14.9 0.1 0.51 10.2 0.0 2.4 2 1 0 2 2 2 0 DAHP synthase ferredoxin-like domain ParD_antitoxin PF03693.14 gi|118431926|ref|NP_148698.2| - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 1 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VWA PF00092.28 gi|118431926|ref|NP_148698.2| - 0.11 12.8 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain E1-E2_ATPase PF00122.20 gi|118431927|ref|NP_148699.2| - 3.1e-35 121.4 2.4 3.1e-35 121.4 2.4 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|118431927|ref|NP_148699.2| - 8.8e-29 101.3 0.1 1.5e-28 100.6 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|118431927|ref|NP_148699.2| - 9.7e-11 41.9 1.0 6.9e-05 22.7 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|118431927|ref|NP_148699.2| - 0.025 15.0 0.0 0.076 13.4 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase ProQ_C PF17516.2 gi|118431927|ref|NP_148699.2| - 0.039 13.4 2.5 0.14 11.6 0.2 2.4 2 0 0 2 2 2 0 ProQ C-terminal domain tRNA_anti-codon PF01336.25 gi|118431927|ref|NP_148699.2| - 0.28 11.2 1.3 24 5.0 0.0 2.8 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain DUF2190 PF09956.9 gi|118431927|ref|NP_148699.2| - 0.44 11.1 5.0 0.39 11.2 0.4 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) PsbJ PF01788.17 gi|118431927|ref|NP_148699.2| - 1.2 9.1 6.8 0.11 12.3 0.7 2.6 2 1 0 2 2 2 0 PsbJ DUF3088 PF11287.8 gi|14602152|ref|NP_148700.1| - 0.16 11.7 0.0 2.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3088) Aminotran_1_2 PF00155.21 gi|14602153|ref|NP_148701.1| - 4.5e-37 128.1 0.0 5.8e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|14602153|ref|NP_148701.1| - 0.0061 15.5 0.0 0.018 14.0 0.0 1.6 1 1 0 1 1 1 1 Allinase Beta_elim_lyase PF01212.21 gi|14602153|ref|NP_148701.1| - 0.056 12.7 0.0 0.094 12.0 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Radical_SAM PF04055.21 gi|118431928|ref|NP_148702.2| - 2e-12 47.8 0.0 7e-12 46.0 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily ABC2_membrane PF01061.24 gi|14602155|ref|NP_148703.1| - 2.8e-31 108.6 24.7 2.8e-31 108.6 24.7 2.3 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|14602155|ref|NP_148703.1| - 8.9e-19 67.8 21.5 8.9e-19 67.8 21.5 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|14602155|ref|NP_148703.1| - 3.6e-05 23.2 18.9 7.9e-05 22.1 18.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|118431929|ref|NP_148704.2| - 2.6e-29 102.5 0.0 3.9e-29 101.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|118431929|ref|NP_148704.2| - 3.8e-14 53.2 0.1 6.1e-09 36.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|118431929|ref|NP_148704.2| - 2e-08 34.8 0.0 3.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|118431929|ref|NP_148704.2| - 0.00091 18.9 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|118431929|ref|NP_148704.2| - 0.004 17.7 0.1 0.0063 17.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain KdpD PF02702.17 gi|118431929|ref|NP_148704.2| - 0.0041 16.6 0.0 0.0097 15.4 0.0 1.6 1 1 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA PF00004.29 gi|118431929|ref|NP_148704.2| - 0.0055 17.1 0.1 0.069 13.6 0.1 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|118431929|ref|NP_148704.2| - 0.011 15.7 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|118431929|ref|NP_148704.2| - 0.017 15.4 0.1 0.075 13.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|118431929|ref|NP_148704.2| - 0.024 14.3 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|118431929|ref|NP_148704.2| - 0.036 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|118431929|ref|NP_148704.2| - 0.038 13.6 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|118431929|ref|NP_148704.2| - 0.041 13.5 0.0 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase SMC_N PF02463.19 gi|118431929|ref|NP_148704.2| - 0.042 13.3 0.0 8 5.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain HTH_11 PF08279.12 gi|118431929|ref|NP_148704.2| - 0.043 13.8 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 HTH domain AAA_15 PF13175.6 gi|118431929|ref|NP_148704.2| - 0.046 13.4 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|118431929|ref|NP_148704.2| - 0.05 13.9 0.0 0.19 12.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|118431929|ref|NP_148704.2| - 0.071 13.1 0.4 4.6 7.2 0.1 3.2 4 0 0 4 4 4 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|118431929|ref|NP_148704.2| - 0.091 12.3 0.6 0.21 11.1 0.2 1.9 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|118431929|ref|NP_148704.2| - 0.098 12.0 0.0 0.4 10.0 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|118431929|ref|NP_148704.2| - 0.13 12.6 0.1 0.29 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain Flavin_Reduct PF01613.18 gi|14602157|ref|NP_148705.1| - 9.7e-19 67.9 0.0 1.3e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain SDF PF00375.18 gi|118431930|ref|NP_148707.2| - 5.4e-129 430.6 34.6 6.1e-129 430.4 34.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Lactamase_B PF00753.27 gi|14602160|ref|NP_148708.1| - 1.3e-26 93.9 3.4 1.8e-26 93.4 3.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|14602160|ref|NP_148708.1| - 0.0006 19.4 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HTH_20 PF12840.7 gi|14602160|ref|NP_148708.1| - 0.14 12.2 1.8 0.49 10.5 0.0 2.7 2 1 1 3 3 3 0 Helix-turn-helix domain BPD_transp_2 PF02653.16 gi|118431931|ref|NP_148709.2| - 2.6e-33 115.3 36.1 3.3e-33 115.0 36.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|118431932|ref|NP_148710.2| - 8.1e-39 133.4 27.2 8.1e-39 133.4 27.2 2.1 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|14602163|ref|NP_148711.1| - 1.6e-44 151.8 0.0 2.6e-30 105.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|14602163|ref|NP_148711.1| - 3e-06 27.3 0.0 0.015 15.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|14602163|ref|NP_148711.1| - 0.00048 19.8 0.0 0.044 13.5 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|14602163|ref|NP_148711.1| - 0.003 17.5 0.0 0.016 15.1 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|14602163|ref|NP_148711.1| - 0.012 16.1 0.0 0.021 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|14602163|ref|NP_148711.1| - 0.035 14.4 0.1 0.92 9.8 0.1 2.8 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|14602163|ref|NP_148711.1| - 0.036 12.9 2.1 0.74 8.5 0.1 3.3 3 1 0 3 3 3 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|14602163|ref|NP_148711.1| - 0.087 13.2 0.1 0.5 10.7 0.0 2.3 3 1 0 3 3 3 0 AAA ATPase domain NACHT PF05729.12 gi|14602163|ref|NP_148711.1| - 0.15 11.9 0.0 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|14602163|ref|NP_148711.1| - 0.18 11.8 0.1 0.4 10.7 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF3584 PF12128.8 gi|14602163|ref|NP_148711.1| - 0.19 9.2 0.1 0.26 8.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Bmp PF02608.14 gi|118431933|ref|NP_148712.2| - 2.6e-50 171.1 0.0 3.6e-50 170.7 0.0 1.3 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DNA_pol_lambd_f PF10391.9 gi|118431933|ref|NP_148712.2| - 0.12 12.2 0.1 8.2 6.3 0.0 3.0 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda TusA PF01206.17 gi|118431934|ref|YP_874950.1| - 5.2e-06 26.2 0.0 6e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Oxidored_nitro PF00148.19 gi|118431934|ref|YP_874950.1| - 0.11 11.2 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Rhodanese PF00581.20 gi|118431935|ref|NP_148714.2| - 1.8e-42 144.2 0.0 1.9e-22 79.8 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Radical_SAM PF04055.21 gi|14602168|ref|NP_148716.1| - 4.1e-17 63.0 0.0 4.1e-17 63.0 0.0 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|14602168|ref|NP_148716.1| - 2e-07 31.1 0.4 5.3e-07 29.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|14602168|ref|NP_148716.1| - 0.00054 20.3 0.0 0.0012 19.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Leucyl-specific PF14795.6 gi|14602168|ref|NP_148716.1| - 0.058 13.5 0.3 0.17 11.9 0.1 1.9 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain MbtH PF03621.13 gi|118431936|ref|YP_874951.1| - 0.11 11.9 0.2 8.8 5.9 0.1 2.1 1 1 1 2 2 2 0 MbtH-like protein Amidinotransf PF02274.17 gi|118431937|ref|NP_148717.2| - 4.6e-21 75.3 0.0 8.6e-11 41.5 0.0 2.7 2 1 0 2 2 2 2 Amidinotransferase AMP-binding PF00501.28 gi|118431938|ref|NP_148719.2| - 4.3e-69 233.2 0.0 5.1e-69 232.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|118431938|ref|NP_148719.2| - 2e-29 102.4 0.4 5.1e-29 101.1 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TFX_C PF14601.6 gi|118431938|ref|NP_148719.2| - 0.11 12.5 0.0 1.1 9.3 0.0 2.5 3 0 0 3 3 3 0 DNA_binding protein, TFX, C-term ACAS_N PF16177.5 gi|118431939|ref|YP_874952.1| - 7.6e-20 70.6 0.2 1.4e-19 69.8 0.2 1.4 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|118431939|ref|YP_874952.1| - 3.1e-11 42.5 0.0 4.1e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Fer4_11 PF13247.6 gi|118431940|ref|NP_148720.2| - 3.8e-27 94.3 10.1 3.8e-27 94.3 10.1 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|118431940|ref|NP_148720.2| - 1.8e-14 54.0 33.0 1.9e-07 31.5 9.7 3.6 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|118431940|ref|NP_148720.2| - 1.9e-13 50.4 44.4 4.8e-06 26.6 8.2 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|118431940|ref|NP_148720.2| - 6.9e-13 48.1 39.7 4.3e-07 29.7 2.9 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|118431940|ref|NP_148720.2| - 2.3e-12 46.8 50.1 1.6e-07 31.3 8.3 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|118431940|ref|NP_148720.2| - 2.1e-11 43.1 50.6 3.4e-08 33.0 3.0 6.1 6 1 0 6 6 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|118431940|ref|NP_148720.2| - 2.4e-09 36.7 43.5 1.3e-05 25.0 1.6 5.3 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|118431940|ref|NP_148720.2| - 9.6e-09 35.6 48.9 0.0033 18.3 5.5 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|118431940|ref|NP_148720.2| - 4.8e-05 23.4 18.8 0.00058 19.9 8.7 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|118431940|ref|NP_148720.2| - 5.2e-05 23.7 23.2 0.68 10.5 2.1 4.5 3 2 0 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|118431940|ref|NP_148720.2| - 0.00024 21.8 17.8 0.0065 17.2 2.7 4.2 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|118431940|ref|NP_148720.2| - 0.00078 20.3 31.3 0.55 11.2 5.0 4.7 4 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|118431940|ref|NP_148720.2| - 0.0039 17.6 33.3 0.086 13.3 10.2 4.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|118431940|ref|NP_148720.2| - 0.011 16.1 13.5 0.027 15.0 2.6 5.0 6 0 0 6 6 5 0 4Fe-4S binding domain NrfD PF03916.14 gi|14602172|ref|NP_148721.1| - 4.1e-72 243.5 20.7 6.3e-72 242.9 20.7 1.2 1 0 0 1 1 1 1 Polysulphide reductase, NrfD 7tm_1 PF00001.21 gi|14602172|ref|NP_148721.1| - 0.086 12.1 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) DUF5392 PF17370.2 gi|14602172|ref|NP_148721.1| - 0.32 11.1 0.0 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5392) Molybdopterin PF00384.22 gi|14602175|ref|NP_148724.1| - 1.3e-16 60.6 0.1 6.8e-13 48.4 0.0 2.3 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|14602175|ref|NP_148724.1| - 3.4e-15 56.0 0.0 1.2e-14 54.3 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|14602175|ref|NP_148724.1| - 7.7e-06 25.8 0.1 0.0012 18.8 0.1 2.4 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|14602175|ref|NP_148724.1| - 0.0037 17.1 0.1 0.0069 16.2 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CDC48_N PF02359.18 gi|14602175|ref|NP_148724.1| - 0.035 14.3 0.0 0.092 12.9 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Nitrate_red_del PF02613.15 gi|118431941|ref|NP_148725.2| - 1.9e-06 27.9 0.2 5.3e-06 26.5 0.0 1.7 1 1 1 2 2 2 1 Nitrate reductase delta subunit MFS_1 PF07690.16 gi|118431942|ref|NP_148727.2| - 1.9e-16 59.9 47.2 1.9e-16 59.9 47.2 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily PIN PF01850.21 gi|14602179|ref|NP_148728.1| - 1.5e-15 57.7 0.6 1.8e-15 57.6 0.6 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|14602179|ref|NP_148728.1| - 0.013 15.7 0.1 0.016 15.4 0.1 1.1 1 0 0 1 1 1 0 PIN domain DUF4411 PF14367.6 gi|14602179|ref|NP_148728.1| - 0.09 12.7 0.7 0.13 12.1 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) DUF104 PF01954.16 gi|118431943|ref|YP_874953.1| - 3.7e-17 62.5 4.2 4.3e-17 62.3 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|118431944|ref|NP_148729.2| - 2e-09 38.0 1.2 3.3e-09 37.3 1.2 1.4 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|118431944|ref|NP_148729.2| - 2.9e-09 37.7 0.2 3.5e-09 37.4 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|118431944|ref|NP_148729.2| - 4.4e-06 27.3 0.4 8.9e-05 23.0 0.1 2.1 1 1 1 2 2 2 1 PIN domain PIN_2 PF10130.9 gi|118431944|ref|NP_148729.2| - 3.9e-05 23.9 0.6 4.7e-05 23.6 0.6 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|118431944|ref|NP_148729.2| - 0.059 13.1 0.1 0.18 11.6 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) MazE_antitoxin PF04014.18 gi|118431945|ref|YP_874954.1| - 4.8e-07 29.6 1.8 4.8e-07 29.6 1.8 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|118431945|ref|YP_874954.1| - 1e-06 28.6 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like AbrB-like PF14250.6 gi|118431945|ref|YP_874954.1| - 0.021 14.9 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator PrlF_antitoxin PF15937.5 gi|118431945|ref|YP_874954.1| - 0.035 14.5 0.1 0.041 14.3 0.1 1.2 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin SH3_1 PF00018.28 gi|118431945|ref|YP_874954.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 SH3 domain PIN PF01850.21 gi|118431946|ref|YP_874955.1| - 2.1e-12 47.6 0.0 2.2e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|118431947|ref|YP_874956.1| - 1.8e-19 69.9 4.7 2e-19 69.7 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF5615 PF18480.1 gi|14602181|ref|NP_148732.1| - 1.1e-11 44.3 0.0 1.8e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Mut7-C PF01927.16 gi|14602181|ref|NP_148732.1| - 0.00066 19.8 0.0 0.00073 19.7 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain XPG_I_2 PF12813.7 gi|14602181|ref|NP_148732.1| - 0.0019 17.7 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 XPG domain containing CHASE3 PF05227.13 gi|14602181|ref|NP_148732.1| - 0.13 12.1 0.0 0.48 10.3 0.0 1.7 2 0 0 2 2 2 0 CHASE3 domain DUF433 PF04255.14 gi|118431948|ref|NP_148733.2| - 5.4e-19 67.8 0.1 6.5e-19 67.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Sigma70_r4 PF04545.16 gi|118431948|ref|NP_148733.2| - 0.0022 17.5 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|118431948|ref|NP_148733.2| - 0.0027 17.5 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain STAC2_u1 PF16664.5 gi|118431948|ref|NP_148733.2| - 0.016 15.7 0.0 1.2 9.6 0.1 2.1 1 1 1 2 2 2 0 Unstructured on SH3 and cysteine-rich domain-containing protein 2 Sigma70_r3 PF04539.16 gi|118431948|ref|NP_148733.2| - 0.12 12.5 0.1 0.33 11.1 0.1 1.6 2 0 0 2 2 2 0 Sigma-70 region 3 UPF0122 PF04297.14 gi|118431948|ref|NP_148733.2| - 0.13 12.5 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF5338 PF17273.2 gi|118431948|ref|NP_148733.2| - 0.15 12.1 0.0 0.33 11.1 0.0 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5338) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Aeropyrum_pernix_K1_uid57757/NC_000854.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Aeropyrum_pernix_K1_uid57757/NC_000854.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Aeropyrum_pernix_K1_uid57757/NC_000854.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Aeropyrum_pernix_K1_uid57757/NC_000854.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 10:47:16 2019 # [ok]