# R script for Peak Model
#  -- generated by MACS
p <- c(0.0416671155615,0.0485473021916,0.0554833990741,0.0624098191822,0.0693362392902,0.0692975321924,0.0692964569953,0.0691760349133,0.0691029215064,0.0688513253708,0.0690459360569,0.0690996959149,0.0691029215064,0.0691158238723,0.0690814175632,0.0691351774212,0.0691685085332,0.0691889372792,0.0690900191404,0.0692448475316,0.0690814175632,0.0690319584938,0.0689803490301,0.0687943399213,0.0689018596374,0.0687986407099,0.0687212265144,0.0687233769087,0.0688362726106,0.0688620773424,0.0689104612146,0.0688803556941,0.0689695970585,0.0690609888171,0.0689846498187,0.0690287329023,0.0690513120427,0.0693233369243,0.0693190361356,0.0692523739117,0.0694072023028,0.0695190228075,0.0693760215851,0.0696254673264,0.0695889106229,0.0696136401576,0.0695459027365,0.0693276377129,0.0691158238723,0.0690631392114,0.0689362659465,0.0688169190617,0.0687943399213,0.0685857516722,0.0683922161833,0.0683406067196,0.0683459827054,0.0683266291565,0.0684717807731,0.0686911209939,0.0687341288803,0.0689513187067,0.0689405667351,0.0688265958361,0.0689674466641,0.0689222883834,0.0689233635806,0.0689136868061,0.0689588450869,0.0688610021453,0.068879280497,0.0686169323898,0.0686846698109,0.068765309598,0.068671767445,0.0685943532494,0.0684986607022,0.068557796546,0.0685760748977,0.0684986607022,0.0684029681549,0.0684696303788,0.068383614606,0.0684115697322,0.0685169390539,0.0687663847951,0.0688416485964,0.0687212265144,0.068651338699,0.068665316262,0.0686964969797,0.0688158438645,0.0688545509623,0.0687771367667,0.0686147819955,0.0686040300239,0.0686029548267,0.0686739178393,0.0687943399213,0.0687126249371,0.0685975788409,0.068504036688,0.0687330536832,0.0687147753314,0.0690093793534,0.0688040166957,0.0687610088093,0.0688749797083,0.0688018663014,0.0688588517509,0.0691373278155,0.0690287329023,0.0689158372004,0.069026582508,0.0689362659465,0.069113673478,0.0693394648817,0.0693383896845,0.0694706389353,0.0696534224526,0.0696114897633,0.0696760015929,0.0696749263958,0.0698587851102,0.0698222284068,0.0697630925629,0.0697620173658,0.069777070126,0.0696104145661,0.0694846164984,0.0694899924842,0.0696157905519,0.0698405067585,0.0696717008043,0.0698383563642,0.0698383563642,0.0697706189431,0.0696996559305,0.0699749064035,0.0700523205991,0.0701512387379,0.0700308166559,0.0697319118453,0.0697964236749,0.0698071756465,0.0698587851102,0.0698200780124,0.0699523272632,0.0697910476891,0.069984583178,0.069991034361,0.0701490883436,0.0701727426811,0.0704318651968,0.0706340022629,0.0707264692188,0.0710888106618,0.0712522406302,0.0713533091633,0.071290947728,0.0714360993447,0.0716930714661,0.0719392916158,0.0718952085322,0.0719382164187,0.07210809757,0.0720575633035,0.0719844498966,0.0720328337688,0.0721736845968,0.0720887440211,0.072000577854,0.0720489617262,0.0719779987136,0.0720134802199,0.0719715475306,0.0721102479643,0.0723274377908,0.072315610622,0.0722726027356,0.0723919496204,0.0725586051803,0.0727532158663,0.0729886840445,0.0729811576644,0.0729542777353,0.0729349241865,0.0729972856218,0.0731757683504,0.0733026416153,0.0733972589655,0.0733650030507,0.073454244415,0.0733725294308,0.0732327537999,0.0734821995412,0.0733929581768,0.0733714542336,0.0733983341626,0.0734348908661,0.0734585452036,0.0735854184686,0.0736628326641,0.073762826,0.0740886107397,0.0741466713864,0.0745025616465,0.074579975842,0.074733729036,0.0749605956369,0.075169183886,0.0753745465437,0.0754616375137,0.0755885107786,0.0757325871981,0.0757110832549,0.0755584052581,0.0756863537202,0.07567130096,0.0758207533653,0.0757594671271,0.0758637612517,0.0760486951633,0.0762669601869,0.0762927649187,0.0765561882231,0.0767594004864,0.0768938001315,0.0771916297449,0.0771572234358,0.077392691614,0.0774109699657,0.0774754817953,0.0775174144846,0.0775862271028,0.0777313787195,0.0780550130648,0.0782130670474,0.078350692284,0.0785807844763,0.0788076510772,0.0787667935851,0.0789635546655,0.0790603224099,0.0792635346732,0.0793613776149,0.0793484752489,0.0793742799808,0.0794366414161,0.0795946953987,0.0795688906668,0.0799548864475,0.0799290817156,0.0800495037976,0.0802000314001,0.0802763703985,0.0805021618022,0.0806268846728,0.080648388616,0.080581726392,0.0805698992233,0.0807806378667,0.0811537312814,0.0814848920069,0.0815494038365,0.0816891794674,0.0817418641282,0.0818665869989,0.0822805379057,0.0823353729608,0.0825848187021,0.0823687040728,0.0823170946091,0.0822665603426,0.0825428860128,0.0826826616437,0.0829675888912,0.0831363948454,0.0830632814385,0.0834030437412,0.0836503390882,0.0839696726448,0.0839384919272,0.0842718030469,0.084225569569,0.0845943621951,0.0846040389695,0.084787897684,0.0849792827786,0.0851416375498,0.0852577588431,0.0853093683068,0.0856480554124,0.0857157928335,0.0861093149943,0.0861802780068,0.086388866256,0.0866748687007,0.0870511877069,0.0873705212635,0.0880801513895,0.0887607511921,0.0894660805294,0.090254200048,0.0911304857339,0.0920401025317,0.0930034791875,0.093723861285,0.0945936957879,0.0952484908586,0.0957291039894,0.0962570257952,0.0965623817888,0.0968064515442,0.096822579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m <- 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ycorr <- 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altd  <- c(264)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('Monodelphis_domestica-male-liver-H3K27Ac-ERR572161.50mers.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 264',bty='n')
dev.off()