# R script for Peak Model
#  -- generated by MACS
p <- c(0.0414378180744,0.0484226605899,0.0553642358342,0.0622418507647,0.0691730794876,0.0689736738031,0.06878461464,0.0690432776741,0.0691693171162,0.0692012972732,0.0692520892872,0.0692614952157,0.0692003566803,0.0691533270378,0.0690837231667,0.0691890695661,0.0692859506298,0.0689840203245,0.0689642678746,0.0688175353898,0.0686312980052,0.0686077831839,0.0685974366625,0.0685654565055,0.0685099615273,0.0684450606206,0.068340654814,0.0684149616493,0.068340654814,0.0685955554768,0.0687705057472,0.0685917931054,0.0686463474908,0.0685842683626,0.0686284762266,0.0685250110129,0.0683020905071,0.0683209023641,0.0684064963136,0.0682729321287,0.0682569420502,0.0683011499143,0.0681939223292,0.0681544174294,0.0680161502803,0.0679587741163,0.068208031222,0.0682306054504,0.0681892193649,0.0680264968016,0.0679973384232,0.0679916948661,0.067859071274,0.0679089226952,0.0678816455025,0.0679456058164,0.0678280317099,0.0677367942033,0.0675703092686,0.0674621410907,0.0672580324419,0.0672505076991,0.0672853096346,0.0672853096346,0.0673897154411,0.0672871908203,0.0673718441769,0.0673718441769,0.0674612004978,0.0676126359469,0.0677593684318,0.0676869427822,0.0676493190682,0.0676399131396,0.0676173389112,0.067561843933,0.0674386262694,0.0673069432702,0.0673868936626,0.0672505076991,0.0671968939066,0.0670210030433,0.0671263494427,0.0670934286929,0.0671517454497,0.0672110027993,0.0672119433922,0.0670426366789,0.0666983796952,0.0667491717092,0.0666156075243,0.0666701619097,0.0665516472104,0.0665704590674,0.0663494197473,0.0663484791545,0.0663014495119,0.0664557067396,0.0666334787885,0.0666109045601,0.0667425875593,0.0667764489019,0.0668253597302,0.0669184784225,0.0669673892508,0.0669260031653,0.0671724384924,0.0671461018926,0.0671978344994,0.0672467453277,0.067244864142,0.0672072404279,0.067175260271,0.0670379337147,0.0671216464784,0.0670322901575,0.0668714487799,0.066978676365,0.0669269437582,0.0668676864085,0.0667510528949,0.0668432309944,0.0667585776377,0.0669034289369,0.0668206567659,0.0669109536797,0.0668874388584,0.066807488466,0.0669843199221,0.0670369931218,0.067194072128,0.0672542700705,0.0673022403059,0.0673248145344,0.0675119925118,0.0675449132616,0.06758723994,0.0677132793821,0.0676088735755,0.0675355073331,0.067441448048,0.0674320421194,0.0675467944473,0.0674480321979,0.0674480321979,0.0675787746043,0.0678449623813,0.0677584278389,0.0677922891816,0.0679785265662,0.0681045660083,0.0682748133144,0.0682992687286,0.0683557042997,0.0682371896004,0.0683566448925,0.068321842957,0.068448822992,0.068416842835,0.0684507041777,0.0686077831839,0.0685240704201,0.068461050699,0.0684751595918,0.0684281299492,0.0683933280137,0.0682381301932,0.0683171399927,0.0683763973424,0.0683378330355,0.0683839220852,0.0683989715708,0.0686867929834,0.0687441691473,0.0689463966104,0.0688946640036,0.0690583271598,0.0689398124605,0.0690931290953,0.0690959508738,0.0689670896532,0.0690743172382,0.0689539213532,0.0691354557736,0.0693010001154,0.0694618414931,0.0695041681714,0.0698239697409,0.0698202073695,0.0701324841962,0.0704080779017,0.0705510480151,0.0707175329499,0.0706893151643,0.0706705033073,0.0707777308924,0.0708351070563,0.070672384493,0.0707523348854,0.0707288200641,0.0704870877012,0.0705858499506,0.0705811469864,0.0708031268994,0.0710241662195,0.0712273342754,0.0713148094106,0.0715245616165,0.0717634722008,0.0718791651215,0.0722384715908,0.0722779764906,0.0723899070399,0.0723052536833,0.0722873824191,0.0722337686265,0.0722920853833,0.0725488672318,0.0726523324455,0.0727746095162,0.072877134137,0.0728592628728,0.0729345103009,0.0731602525853,0.0733380246342,0.0734132720624,0.0735703510686,0.0737048558463,0.0737763409031,0.0739691624376,0.0740274791944,0.0742466373288,0.074498716213,0.0748561414966,0.0750235670242,0.0752314380444,0.0753744081578,0.0755098535284,0.0756763384632,0.0756509424562,0.0758146056123,0.0758465857693,0.0760459914538,0.0758766847405,0.0760074271469,0.0759839123256,0.0763789613233,0.0763140604165,0.0764043573302,0.0765727234507,0.0768172775921,0.0771370791616,0.0772010394755,0.0774117322742,0.0776506428585,0.0779920780636,0.0778547515073,0.0780588601561,0.0781689095197,0.0785075229463,0.0785329189533,0.0787680671662,0.0788809383083,0.0791706409066,0.0791649973495,0.0793183139843,0.0796381155538,0.079852570724,0.0799635606805,0.0799795507589,0.080334154264,0.0803802433137,0.0806558370192,0.0806991042904,0.0808749951536,0.0811026186237,0.0811016780308,0.0811562324162,0.0815559843781,0.0817544494698,0.0818090038552,0.081987716497,0.0821664291388,0.0824476664014,0.0826263790432,0.0826404879359,0.0829809825482,0.0831465268901,0.0832725663322,0.083451278974,0.0836807836297,0.083900882357,0.0840880603344,0.0842912283904,0.0844633568822,0.0848668712155,0.0851010788355,0.0855563257757,0.0858638996381,0.0864649384703,0.0870452842597,0.0875992934492,0.088335777652,0.0890938954903,0.090065527906,0.0908038932944,0.0914726548118,0.0924160694419,0.092998296417,0.0934911670712,0.0938946814046,0.0944355222942,0.0946603239857,0.0949142840556,0.09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m <- 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ycorr <- 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altd  <- c(257)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('Canis_familiaris-male-liver-H3K27Ac-ERR572275.50mers.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 257',bty='n')
dev.off()