python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZRH_limb_H3K27ac-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF001ZRH_limb_H3K27ac-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZRI_limb_H3K27ac-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF001ZRI_limb_H3K27ac-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZRY_limb_H3K4me1-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF001ZRY_limb_H3K4me1-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZRZ_limb_H3K4me1-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF001ZRZ_limb_H3K4me1-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZSS_limb_H3K9ac-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF001ZSS_limb_H3K9ac-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZSV_limb_H3K9ac-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF001ZSV_limb_H3K9ac-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZTO_limb_H3K27me3-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF001ZTO_limb_H3K27me3-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZTP_limb_H3K27me3-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF001ZTP_limb_H3K27me3-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZUL_limb_H3K4me3-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF001ZUL_limb_H3K4me3-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF001ZUQ_limb_H3K4me3-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF001ZUQ_limb_H3K4me3-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF002BGH_limb_H3K4me2-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF002BGH_limb_H3K4me2-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF002BHA_limb_H3K4me2-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF002BHA_limb_H3K4me2-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF002DTF_limb_H3K36me3-mouse_11.5_day_b1_t1_all_RPM.bedGraph 36 ENCFF002DTF_limb_H3K36me3-mouse_11.5_day_b1_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF002DTG_limb_H3K36me3-mouse_11.5_day_b1_t2_all_RPM.bedGraph 36 ENCFF002DTG_limb_H3K36me3-mouse_11.5_day_b1_t2_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF002DTH_limb_H3K36me3-mouse_11.5_day_b2_t1_all_RPM.bedGraph 36 ENCFF002DTH_limb_H3K36me3-mouse_11.5_day_b2_t1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF002DTJ_limb_H3K36me3-mouse_11.5_day_b2_t2_all_RPM.bedGraph 36 ENCFF002DTJ_limb_H3K36me3-mouse_11.5_day_b2_t2_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF044YXS_limb_H3K36me3-mouse_11.5_day_b1_t3_all_RPM.bedGraph 36 ENCFF044YXS_limb_H3K36me3-mouse_11.5_day_b1_t3_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF115DQJ_limb_H3K4me1-mouse_11.5_day_b1_t2_all_RPM.bedGraph 36 ENCFF115DQJ_limb_H3K4me1-mouse_11.5_day_b1_t2_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF237DCF_limb_RNA-seq_11.5_day_b1_t1.fastqAligned.sortedByCoord.out_unique_RPM.bedGraph 36 ENCFF237DCF_limb_RNA-seq_11.5_day_b1_t1.fastqAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF249AZE_limb_RNA-seq_11.5_day_b2_t1.fastqAligned.sortedByCoord.out_unique_RPM.bedGraph 36 ENCFF249AZE_limb_RNA-seq_11.5_day_b2_t1.fastqAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF412LWV_limb_H3K36me3-mouse_11.5_day_b2_t3_all_RPM.bedGraph 36 ENCFF412LWV_limb_H3K36me3-mouse_11.5_day_b2_t3_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF537APL_limb_H3K27me3-mouse_11.5_day_b2_t2_all_RPM.bedGraph 36 ENCFF537APL_limb_H3K27me3-mouse_11.5_day_b2_t2_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF593ZTR_limb_H3K27me3-mouse_11.5_day_b1_t2_all_RPM.bedGraph 36 ENCFF593ZTR_limb_H3K27me3-mouse_11.5_day_b1_t2_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF654OBR_limb_RNA-seq_11.5_day_b2_t1.fastqAligned.sortedByCoord.out_unique_RPM.bedGraph 36 ENCFF654OBR_limb_RNA-seq_11.5_day_b2_t1.fastqAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF820NAK_limb_RNA-seq_11.5_day_b1_t1.fastqAligned.sortedByCoord.out_unique_RPM.bedGraph 36 ENCFF820NAK_limb_RNA-seq_11.5_day_b1_t1.fastqAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCFF822LXA_limb_H3K4me1-mouse_11.5_day_b2_t2_all_RPM.bedGraph 36 ENCFF822LXA_limb_H3K4me1-mouse_11.5_day_b2_t2_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCSR085EYQ_limb_H3K27me3-mouse_11.5_day_b1_merged_all_RPM.bedGraph 36 ENCSR085EYQ_limb_H3K27me3-mouse_11.5_day_b1_merged_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCSR085EYQ_limb_H3K27me3-mouse_11.5_day_b2_merged_all_RPM.bedGraph 36 ENCSR085EYQ_limb_H3K27me3-mouse_11.5_day_b2_merged_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCSR548BCO_limb_H3K4me1-mouse_11.5_day_b1_merged_all_RPM.bedGraph 36 ENCSR548BCO_limb_H3K4me1-mouse_11.5_day_b1_merged_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCSR548BCO_limb_H3K4me1-mouse_11.5_day_b2_merged_all_RPM.bedGraph 36 ENCSR548BCO_limb_H3K4me1-mouse_11.5_day_b2_merged_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCSR871YCT_limb_H3K36me3-mouse_11.5_day_b1_merged_all_RPM.bedGraph 36 ENCSR871YCT_limb_H3K36me3-mouse_11.5_day_b1_merged_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 ENCSR871YCT_limb_H3K36me3-mouse_11.5_day_b2_merged_all_RPM.bedGraph 36 ENCSR871YCT_limb_H3K36me3-mouse_11.5_day_b2_merged_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759864_E10_5_forelimb_H3K27ac_ChIP_seq_rep1_index_6_1_all_RPM.bedGraph 36 GSM759864_E10_5_forelimb_H3K27ac_ChIP_seq_rep1_index_6_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759865_E10_5_forelimb_H3K27ac_ChIP_seq_rep2_index12_1_all_RPM.bedGraph 36 GSM759865_E10_5_forelimb_H3K27ac_ChIP_seq_rep2_index12_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759866_E10_5_forelimb_H3K27me3_ChIP_seq_rep1_1_all_RPM.bedGraph 36 GSM759866_E10_5_forelimb_H3K27me3_ChIP_seq_rep1_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759867_E10_5_forelimb_H3K27me3_ChIP_seq_rep2_1_all_RPM.bedGraph 36 GSM759867_E10_5_forelimb_H3K27me3_ChIP_seq_rep2_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759868_E10_5_forelimb_mRNA_seq_rep1Aligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM759868_E10_5_forelimb_mRNA_seq_rep1Aligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759869_E10_5_forelimb_mRNA_seq_rep2Aligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM759869_E10_5_forelimb_mRNA_seq_rep2Aligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759876_E10_5_hindlimb_H3K27ac_ChIP_seq_rep1_index_6_1_all_RPM.bedGraph 36 GSM759876_E10_5_hindlimb_H3K27ac_ChIP_seq_rep1_index_6_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759877_E10_5_hindlimb_H3K27ac_ChIP_seq_rep2_index_12_1_all_RPM.bedGraph 36 GSM759877_E10_5_hindlimb_H3K27ac_ChIP_seq_rep2_index_12_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759878_E10_5_hindlimb_H3K27me3_ChIP_seq_rep1_1_all_RPM.bedGraph 36 GSM759878_E10_5_hindlimb_H3K27me3_ChIP_seq_rep1_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759879_E10_5_hindlimb_H3K27me3_ChIP_seq_rep2_1_all_RPM.bedGraph 36 GSM759879_E10_5_hindlimb_H3K27me3_ChIP_seq_rep2_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759880_E10_5_hindlimb_mRNA_seq_rep1Aligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM759880_E10_5_hindlimb_mRNA_seq_rep1Aligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM759881_E10_5_hindlimb_mRNA_seq_rep2Aligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM759881_E10_5_hindlimb_mRNA_seq_rep2Aligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM875385_E11_5_forelimb_H3K27ac_ChIP_seq_index6_mate_1_all_RPM.bedGraph 36 GSM875385_E11_5_forelimb_H3K27ac_ChIP_seq_index6_mate_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM875387_E11_5_hindlimb_H3K27ac_ChIP_seq_index7_mate_1_all_RPM.bedGraph 36 GSM875387_E11_5_hindlimb_H3K27ac_ChIP_seq_index7_mate_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036120_ChIPSeq_H3K4me2_e11_5limb_1_all_RPM.bedGraph 36 GSM1036120_ChIPSeq_H3K4me2_e11_5limb_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036121_ChIPSeq_H3K27me3_e11_5limb_1_all_RPM.bedGraph 36 GSM1036121_ChIPSeq_H3K27me3_e11_5limb_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036122_ChIPSeq_CTCF_e10_5forelimb_rep1_1_all_RPM.bedGraph 36 GSM1036122_ChIPSeq_CTCF_e10_5forelimb_rep1_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036123_ChIPSeq_CTCF_e10_5forelimb_rep2_1_all_RPM.bedGraph 36 GSM1036123_ChIPSeq_CTCF_e10_5forelimb_rep2_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036124_ChIPSeq_CTCF_e10_5hindlimb_rep1_1_all_RPM.bedGraph 36 GSM1036124_ChIPSeq_CTCF_e10_5hindlimb_rep1_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036125_ChIPSeq_CTCF_e10_5hindlimb_rep2_1_all_RPM.bedGraph 36 GSM1036125_ChIPSeq_CTCF_e10_5hindlimb_rep2_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036126_ChIPSeq_CTCF_e11_5_limb_1_all_RPM.bedGraph 36 GSM1036126_ChIPSeq_CTCF_e11_5_limb_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036127_ChIPSeq_Smc1a_e11_5limb_rep1_1_all_RPM.bedGraph 36 GSM1036127_ChIPSeq_Smc1a_e11_5limb_rep1_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036128_ChIPSeq_Smc1a_e11_5limb_rep2_1_all_RPM.bedGraph 36 GSM1036128_ChIPSeq_Smc1a_e11_5limb_rep2_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036131_RNA_seq_e11_5forelimbAligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM1036131_RNA_seq_e11_5forelimbAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036131_RNA_seq_e11_5forelimb_STAR_peAligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM1036131_RNA_seq_e11_5forelimb_STAR_peAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036132_RNA_seq_e11_5hindlimbAligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM1036132_RNA_seq_e11_5hindlimbAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1036132_RNA_seq_e11_5hindlimb_STAR_peAligned.sortedByCoord.out_unique_RPM.bedGraph 36 GSM1036132_RNA_seq_e11_5hindlimb_STAR_peAligned.sortedByCoord.out_unique_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039558_mouse_E10_5_FL_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039558_mouse_E10_5_FL_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039559_mouse_E10_5_HL_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039559_mouse_E10_5_HL_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039560_mouse_E11_5_FL_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039560_mouse_E11_5_FL_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039561_mouse_E11_5_HL_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039561_mouse_E11_5_HL_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039562_mouse_E12_5_FL_rep1_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039562_mouse_E12_5_FL_rep1_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039563_mouse_E12_5_HL_rep1_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039563_mouse_E12_5_HL_rep1_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039564_mouse_E12_5_FL_rep2_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039564_mouse_E12_5_FL_rep2_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 GSM1039565_mouse_E12_5_HL_rep2_H3K27ac_ChIP-Seq_1_all_RPM.bedGraph 36 GSM1039565_mouse_E12_5_HL_rep2_H3K27ac_ChIP-Seq_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 LPMO_081715_1A_fl_e11.5_wt1_h3k27ac_all_RPM.bedGraph 36 LPMO_081715_1A_fl_e11.5_wt1_h3k27ac_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 LPMO_081715_1B_fl_e11.5_wt2_h3k27ac_all_RPM.bedGraph 36 LPMO_081715_1B_fl_e11.5_wt2_h3k27ac_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 LPMO_082815_1A_fl_e11.5_wt3_h3k27ac_combined_all_RPM.bedGraph 36 LPMO_082815_1A_fl_e11.5_wt3_h3k27ac_combined_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 LPMO_082815_1B_fl_e11.5_wt4_h3k27ac_combined_all_RPM.bedGraph 36 LPMO_082815_1B_fl_e11.5_wt4_h3k27ac_combined_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 Limb_p300.bedGraph 36 Limb_p300.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 SRR139372_H3K27ac_E11_5_AER_1_all_RPM.bedGraph 36 SRR139372_H3K27ac_E11_5_AER_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 SRR139378_H3K27ac_E11_5_ZPA_1_all_RPM.bedGraph 36 SRR139378_H3K27ac_E11_5_ZPA_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 SRR1688712_Whole_Limb_E11_5_H3K27ac_1_all_RPM.bedGraph 36 SRR1688712_Whole_Limb_E11_5_H3K27ac_1_all_RPM.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 wgEncodeUwDnaseFlbudCd1ME11halfSigRep1.mm10.bedGraph 36 wgEncodeUwDnaseFlbudCd1ME11halfSigRep1.mm10.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 wgEncodeUwDnaseFlbudCd1ME11halfSigRep2.mm10.bedGraph 36 wgEncodeUwDnaseFlbudCd1ME11halfSigRep2.mm10.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 wgEncodeUwDnaseHlbudCd1ME11halfSigRep1.mm10.bedGraph 36 wgEncodeUwDnaseHlbudCd1ME11halfSigRep1.mm10.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 wgEncodeUwDnaseHlbudCd1ME11halfSigRep2.mm10.bedGraph 36 wgEncodeUwDnaseHlbudCd1ME11halfSigRep2.mm10.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 wgEncodeUwDnaseHlembryoCd1ME11halfSigRep1.mm10.bedGraph 36 wgEncodeUwDnaseHlembryoCd1ME11halfSigRep1.mm10.journal.pcbi.1005720.s011.extended.RPKM -RPMInput
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromwig.py /oak/stanford/groups/akundaje/marinovg/cs273b-2017-Fall/Group12/journal.pcbi.1005720.s011.extended.bed 0 wgEncodeUwDnaseHlembryoCd1ME11halfSigRep2.mm10.bedGraph 36 wgEncodeUwDnaseHlembryoCd1ME11halfSigRep2.mm10.journal.pcbi.1005720.s011.extended.RPKM -RPMInput