Index of /kundaje/marinovg/oak/various/code/single-cell-RNA-seq

	Name	Last modified	Size	Description
	Parent Directory		-
	10XFastQStreamRead1.py	2019-01-22 08:22	1.9K
	10X_BAM_cluster_split.py	2021-11-15 21:48	2.8K
	ASECopiesPerCellRecalculation.py	2013-01-21 19:25	5.6K
	CorrelationBetweenGenes.py	2012-11-16 00:43	2.6K
	CorrelationBetweenModules.py	2013-01-17 22:23	6.2K
	CoverageBasedReannotationCandidates.py	2014-06-02 17:53	4.2K
	FractionDetected.py	2012-11-20 08:01	4.1K
	JunctionsCopiesPerCellRecalculation.py	2013-01-31 09:25	22K
	Make10XAggrMatrix.py	2018-01-03 21:41	2.8K
	Make10XMatrix.py	2017-08-22 02:38	2.6K
	NumberZeros.py	2013-03-16 14:51	3.9K
	PHATE.py	2018-02-04 01:18	3.3K
	PHATE2.py	2018-06-10 05:10	4.7K
	PIPseq-barcode-annotate.py	2025-03-11 07:20	3.2K
	PoolSimulation.py	2013-04-14 21:54	3.9K
	SHARE-PERTURB-sgRNA-UMI-UG.py	2023-04-12 15:31	6.1K
	SHARE-PERTURB-sgRNA-UMI-merge.py	2023-08-30 17:13	2.5K
	SHARE-PERTURB-sgRNA-UMI.py	2021-08-13 23:57	5.8K
	SHARE-PERTURB-sgRNA-assignment.py	2023-04-12 15:37	3.2K
	SHARE-feature-BC-count.py	2021-07-10 17:10	5.1K
	SHARE-seq-FASTQ_barcode_subset.py	2022-03-28 10:39	2.4K
	SHARE-seq-RNA-BC-sum-across-files.py	2021-04-08 22:35	1.7K
	SHARE-seq-RNA-UMI-Add-UG.py	2022-07-05 17:11	2.5K
	SHARE-seq-RNA-UMI-Add.py	2025-04-22 01:30	2.2K
	SHARE-seq-RNA-UMIs-sum-across-files.py	2021-04-09 08:16	3.5K
	SHARE-seq-UG-first-barcode-split.py	2022-03-21 18:28	3.2K
	SHARE-seq-barcode-annotate-UG.py	2022-03-03 19:48	6.4K
	SHARE-seq-barcode-annotate-from-UG-fastq.py	2023-07-14 22:07	6.6K
	SHARE-seq-barcode-annotate.py	2025-05-08 23:52	7.0K
	SHARE-seq_ATAC_dedup-V2.py	2023-04-10 20:23	4.5K
	SHARE-seq_ATAC_dedup.py	2021-04-13 18:13	3.9K
	SHARE-seq_ATAC_stats_per_cell.py	2024-09-20 19:24	5.8K
	SHARE-seq_BAM_barcode_subset.py	2021-10-11 11:52	3.5K
	SHARE-seq_RNA_counts.py	2024-09-23 05:31	20K
	SHARE-seq_barcode_subset.py	2022-03-21 04:04	2.5K
	UGBAMtoFASTQ-V2.py	2026-01-19 20:36	2.5K
	UGBAMtoFASTQ.py	2023-04-10 16:08	1.6K
	barcodeDesign.py	2018-04-21 05:20	1.8K
	barcodeSubsets-subLibrary-expression-table.py	2023-07-26 03:40	3.5K
	combineASETable.py	2013-01-25 11:06	3.6K
	combineJunctionsTable.py	2013-01-31 13:28	4.2K
	convertFPKMtoCopiesPerCell.py	2013-07-22 22:25	3.7K
	fastqNaNGC.py	2023-01-04 09:45	8.3K
	nomogramPairwiseExpressionConsistency.py	2013-04-19 00:10	4.8K
	sciRNA-seq_counts.py	2018-09-14 10:07	28K
	subBAM_merge_command_generate.py	2023-07-25 11:31	1.0K