Index of /kundaje/marinovg/oak/various/code/erange-4.0a-BAM-2014-05-09-fix

	Name	Last modified	Size	Description
	Parent Directory		-
	2011-05-05-ERANGE-test/	2014-05-09 23:38	-
	MakeBamFromRds.py	2014-05-09 23:38	10K
	MakeRdsFromBam.py	2014-05-09 23:38	13K
	MakeRdsFromBam4.py	2014-05-09 23:38	16K
	MakeRdsFromBam5.py	2014-05-09 23:38	17K
	MakeRdsFromBam_v2.py	2014-05-09 23:38	14K
	MakeRdsFromBam_v3.py	2014-05-09 23:38	14K
	Peak.py	2014-05-09 23:38	664
	Peak.pyc	2014-09-23 00:54	1.6K
	ReadDataset-old.py	2014-05-09 23:38	45K
	ReadDataset.py	2014-05-09 23:38	68K
	ReadDataset.pyc	2014-06-27 17:06	45K
	Region.py	2014-05-09 23:38	2.2K
	Region.pyc	2014-09-23 00:54	2.9K
	__init__.py	2014-05-09 23:38	0
	altSpliceCounts.py	2014-05-09 23:38	5.1K
	analyzego.py	2014-05-09 23:38	2.8K
	bedtoregion.py	2014-05-09 23:38	803
	binstocdf.py	2014-05-09 23:38	1.0K
	buildMatrix.py	2014-05-09 23:38	3.3K
	buildrmaskdb.py	2014-05-09 23:38	1.5K
	buildsnpdb.py	2014-05-09 23:38	2.7K
	cdfdist.py	2014-05-09 23:38	827
	checkrmask.py	2014-05-09 23:38	6.8K
	chiapet/	2014-05-09 23:38	-
	chkSNPrmask.py	2014-05-09 23:38	3.6K
	chksnp.py	2014-05-09 23:38	5.0K
	cistematic/	2014-09-23 00:54	-
	colsum.py	2014-05-09 23:38	816
	combineRPKMs.py	2014-05-09 23:38	2.5K
	combinerds.py	2014-05-09 23:38	4.2K
	commoncode.py	2014-05-09 23:38	28K
	commoncode.pyc	2014-09-23 00:54	22K
	crossmatch.py	2014-05-09 23:38	854
	distalPairs.py	2014-05-09 23:38	5.6K
	docs/	2014-05-09 23:38	-
	farPairs.py	2014-05-09 23:38	6.1K
	featureIntersects.py	2014-05-09 23:38	1.9K
	findMotifs.py	2014-05-09 23:38	4.2K
	findall.py	2014-05-09 23:37	43K
	findall_test.py	2014-05-09 23:38	38K
	fraction.py	2014-05-09 23:38	948
	geneDownstreamBins.py	2014-05-09 23:38	5.1K
	geneLocusBins.py	2014-05-09 23:38	6.2K
	geneLocusCounts.py	2014-05-09 23:38	5.8K
	geneLocusPeaks.py	2014-05-09 23:38	4.1K
	geneMrnaCounts.py	2014-05-09 23:38	7.7K
	geneMrnaCountsWeighted.py	2014-05-09 23:38	8.8K
	geneNeighbors.py	2014-05-09 23:38	5.7K
	geneStallingBins.py	2014-05-09 23:38	6.1K
	geneStartBins.py	2014-05-09 23:38	3.4K
	geneUpstreamBins.py	2014-05-09 23:38	4.6K
	getGOgenes.py	2014-05-09 23:38	3.2K
	getNovelSNPs.py	2014-05-09 23:38	2.3K
	getSNPGeneInfo.py	2014-05-09 23:38	5.3K
	getSNPs.py	2014-05-09 23:38	8.0K
	getallNRSE.py	2014-05-09 23:38	14K
	getallgenes.py	2014-05-09 23:38	11K
	getallsites.py	2014-05-09 23:38	7.8K
	getfasta.py	2014-05-09 23:38	7.2K
	getgosig.py	2014-05-09 23:38	7.3K
	getmers.py	2014-05-09 23:38	1.1K
	getsplicefa.py	2014-05-09 23:38	5.3K
	gfftocis.py	2014-05-09 23:38	1.8K
	gointersects.py	2014-05-09 23:38	901
	intersects.py	2014-05-09 23:38	5.6K
	listGeneFeatures.py	2014-05-09 23:38	1.4K
	makeGraphs.py	2014-05-09 23:38	3.4K
	makeSNPtrack.py	2014-05-09 23:38	2.2K
	makebedfromrds.py	2014-05-09 23:38	16K
	makerdsfrombed.py	2014-05-09 23:38	4.0K
	makerdsfromblat.py	2014-05-09 23:38	13K
	makerdsfrombowtie.py	2014-05-09 23:38	11K
	makerdsfromeland2.py	2014-05-09 23:38	23K
	makesitetrack.py	2014-05-09 23:38	3.3K
	makewiggle.py	2014-05-09 23:38	8.5K
	normalizeExpandedExonic.py	2014-05-09 23:38	7.6K
	normalizeFinalExonic.py	2014-05-09 23:38	5.5K
	partition.py	2014-05-09 23:38	5.7K
	peakstoregion.py	2014-05-09 23:38	1.6K
	plotbardist.py	2014-05-09 23:38	6.2K
	plotnomogram.py	2014-05-09 23:38	3.3K
	plotprofile.py	2014-05-09 23:38	3.8K
	predictSpliceCount.py	2014-05-09 23:38	3.0K
	profilebins.py	2014-05-09 23:38	5.0K
	ratio.py	2014-05-09 23:38	2.5K
	rdsmetadata.py	2014-05-09 23:38	4.2K
	recordLog.py	2014-05-09 23:38	559
	regionBins.py	2014-05-09 23:38	2.4K
	regionCounts.py	2014-05-09 23:38	9.1K
	regionintersects.py	2014-05-09 23:38	8.2K
	regiontobed.py	2014-05-09 23:38	4.3K
	rnaAToIFilter.py	2014-05-09 23:38	779
	rnaEditing.py	2014-05-09 23:38	3.4K
	rnafarPairs.py	2014-05-09 23:38	6.8K
	rnapath/	2014-05-09 23:38	-
	scatterfields.py	2014-05-09 23:38	11K
	siteintersects.py	2014-05-09 23:38	4.5K
	stallCategory.py	2014-05-09 23:38	5.3K
	test/	2014-05-09 23:38	-
	transcripts.py	2014-05-09 23:38	2.2K
	trimreads.py	2014-05-09 23:38	3.8K
	utrChanges.py	2014-05-09 23:38	2.6K
	weighMultireads.py	2014-05-09 23:38	10K