Index of /kundaje/marinovg/oak/various/code/commoncode3.2+

	Name	Last modified	Size	Description
	Parent Directory		-
	weighMultireads.py	2008-12-06 08:25	8.1K
	utrChanges.py	2009-01-14 04:03	2.2K
	trimreads.py	2009-08-09 11:32	2.3K
	transcripts.py	2008-06-19 18:59	1.1K
	stallCategory.py	2008-06-19 18:59	3.8K
	spikes.regions.txt	2009-12-02 21:12	159
	siteintersects.py	2010-03-25 00:41	3.1K
	scatterfields.py	2009-09-09 07:23	7.9K
	runStrandedAnalysis.sh	2009-12-14 22:32	3.1K
	runStandardAnalysis.sh	2009-12-14 22:30	4.5K
	runSNPAnalysis.sh	2009-04-23 05:01	2.5K
	runRNAPairedAnalysis.sh	2010-04-09 14:24	3.3K
	rnapath/	2010-08-31 22:06	-
	rnafarPairs.py	2009-12-13 02:18	5.4K
	regiontobed.py	2009-05-03 22:29	2.6K
	regionintersects.py	2008-12-17 06:12	5.8K
	regionCounts.sh	2010-03-02 13:59	832
	regionCounts.py	2010-03-02 14:31	6.1K
	regionBins.py	2008-12-17 06:11	2.4K
	recordLog.py	2008-12-17 06:09	379
	rdsmetadata.py	2009-03-17 20:48	2.1K
	ratio.py	2008-06-19 18:59	1.4K
	profilebins.py	2008-06-19 18:59	3.5K
	predictSpliceCount.py	2008-06-19 18:59	2.0K
	plotprofile.py	2008-06-19 18:59	2.4K
	plotnomogram.py	2008-12-17 06:06	2.7K
	plotbardist.py	2009-08-03 02:01	4.6K
	peakstoregion.py	2008-12-17 06:04	1.0K
	partition.sh	2009-12-26 21:57	615
	partition.py	2009-03-23 05:24	3.5K
	normalizeFinalExonic.py	2009-04-17 12:59	3.6K
	normalizeExpandedExonic.py	2009-09-21 23:50	5.5K
	makewiggle.py	2009-10-11 16:33	5.6K
	makesitetrack.py	2009-03-24 22:11	1.8K
	makerdsfromeland2.py	2009-02-17 00:58	19K
	makerdsfrombowtie.py	2009-08-05 19:49	8.8K
	makerdsfromblat.py	2010-06-02 22:12	10K
	makerdsfrombed.py	2009-03-25 09:49	2.6K
	makebedfromrds.py	2009-04-30 15:43	11K
	makeSNPtrack.py	2009-04-30 03:33	1.4K
	listGeneFeatures.py	2008-12-17 05:52	943
	intersects.py	2008-09-26 17:57	3.2K
	gointersects.py	2008-12-17 05:32	596
	gfftocis.py	2009-12-15 00:11	2.0K
	getsplicefa.py	2009-05-11 21:31	4.1K
	getmers.py	2008-06-19 18:59	821
	getgosig.py	2008-12-17 05:29	6.2K
	getfasta.py	2009-05-04 17:20	4.0K
	getallsites.py	2009-03-11 23:16	5.5K
	getallgenes.py	2009-12-14 23:05	8.6K
	getallNRSE.py	2008-12-17 05:28	11K
	getSNPs.py	2009-05-11 15:38	5.9K
	getSNPGeneInfo.py	2009-06-27 05:47	3.2K
	getNovelSNPs.py	2008-12-14 19:37	1.6K
	getGOgenes.py	2008-12-17 05:25	2.0K
	geneUpstreamBins.py	2008-12-15 04:32	3.3K
	geneStartBins.py	2008-12-16 14:35	3.6K
	geneStallingBins.py	2008-12-16 14:42	4.5K
	geneNeighbors.py	2008-06-19 18:59	4.3K
	geneMrnaCountsWeighted.py	2009-10-28 14:15	7.1K
	geneMrnaCounts.py	2009-09-21 23:31	4.9K
	geneLocusPeaks.py	2008-12-15 04:48	2.8K
	geneLocusCounts.py	2008-12-15 02:06	3.7K
	geneLocusBins.py	2008-12-15 04:13	3.5K
	geneDownstreamBins.py	2008-12-15 04:49	3.5K
	fraction.py	2008-12-17 05:22	639
	findall.py	2010-09-22 14:35	33K
	findMotifs.py	2008-11-07 01:47	2.7K
	featureIntersects.py	2008-12-17 05:20	969
	farPairs.py	2010-08-10 16:45	5.3K
	distalPairs.py	2009-05-31 21:45	3.5K
	crossmatch.py	2008-06-19 18:59	685
	commoncode.pyc	2014-09-10 06:04	53K
	commoncode.py	2010-09-07 19:52	74K
	combinerds.py	2009-10-19 13:05	2.9K
	combineRPKMs.py	2009-04-17 02:47	1.4K
	colsum.py	2008-06-19 18:59	504
	chksnp.py	2008-12-15 00:21	2.6K
	chkSNPrmask.py	2008-12-14 23:03	2.4K
	checkrmask.py	2009-12-14 22:55	5.1K
	cdfdist.py	2008-06-19 18:59	435
	buildsnpdb.py	2009-05-14 05:45	2.1K
	buildrmaskdb.py	2008-07-30 15:39	1.1K
	buildMatrix.sh	2009-12-26 23:18	1.1K
	buildMatrix.py	2011-08-09 21:18	2.0K
	binstocdf.py	2008-06-19 18:59	638
	bedtoregion.py	2008-07-08 05:19	511
	analyzego.py	2008-06-19 18:59	1.5K
	altSpliceCounts.py	2009-04-16 14:25	3.9K
	RNA-seq.analysisSteps.txt	2010-08-10 16:33	5.2K
	README.rnapath	2010-06-03 21:09	1.8K
	README.rna-seq	2009-12-15 00:20	10K
	README.rna-esnp	2009-04-14 03:20	3.0K
	README.chip-seq	2009-04-17 02:52	8.4K
	README.build-rds	2009-10-06 18:47	13K
	MakeRdsFromBam.py	2010-11-11 20:04	13K
	MakeBamFromRds.py	2010-08-10 16:44	8.9K
	ERANGE.copyright	2009-01-29 04:35	2.1K
	ERANGE.3.2.1	2009-04-17 03:36	0