Index of /kundaje/marinovg/oak/various/code/bisulfite

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]build/2019-01-24 23:11 -  
[TXT]SingleMoleculeCorrelation_NMI_matrix_cython_setup.py2019-01-24 23:11 233  
[ ]kmeans_tsv.R2018-12-01 14:07 839  
[TXT]BismarckCXreportToWig-complement.py2017-07-26 08:24 1.5K 
[TXT]ONT_read_length_methylation.py2018-08-08 09:22 1.5K 
[TXT]coveragesimulation.py2024-11-08 15:46 1.6K 
[TXT]SMAC-seq-resolution.py2018-08-10 15:45 1.7K 
[TXT]BismarckStats.py2017-07-11 16:59 1.8K 
[TXT]NanoporeTSVMappingStats.py2019-04-06 00:45 1.8K 
[TXT]methylation_single_base_to_bedGraph.py2018-04-28 09:52 1.9K 
[TXT]BismarckCXreportToWig.py2017-07-24 23:44 1.9K 
[TXT]SingleMoleculeCorrelation-NMI-matrix-C-BAM-to-heatmap.py2025-05-25 13:04 2.0K 
[TXT]ReadsTSVPerBaseMethylationStats.py2023-05-13 14:54 2.0K 
[TXT]MethylationPercentageSmooth.py2018-04-28 08:11 2.1K 
[TXT]BisMarckMerge.py2025-04-19 03:52 2.1K 
[TXT]SMRTN6mAToBismarckCov.py2018-04-17 06:19 2.1K 
[TXT]SingleMoleculeStatesOverPositions-order-states.py2018-11-25 23:54 2.4K 
[TXT]MethylationPercentageSmooth-nano.py2018-04-28 09:15 2.4K 
[TXT]BismarckSequenceContextPlusMinusSplit.py2025-05-14 07:10 2.4K 
[TXT]SingleMoleculeCorrelation_NMI_matrix_cython.py2019-01-24 23:10 2.6K 
[TXT]methylation-reads-tsv-nanopolish-CpG-to_coverage.py2018-06-03 04:23 2.6K 
[TXT]methylation-reads-tsv-to_single_line.py2020-03-16 17:15 2.8K 
[TXT]methylation-tsv-combine-mods.py2019-01-04 07:55 2.8K 
[TXT]SMAC-seq-resolution-motifs.py2018-09-18 13:23 2.8K 
[TXT]SingleMoleculeCorrelation-annotateTSSs.py2018-07-06 16:12 3.1K 
[TXT]AverageSingleMoleculeEntropy.py2018-10-04 17:25 3.2K 
[TXT]AverageMethylationPerRegion.py2019-04-19 11:18 3.2K 
[TXT]SingleMoleculeCorrelation-annotateTSSs-V2.py2018-11-30 15:09 3.2K 
[TXT]SingleMoleculeStatesOverPositions.py2018-11-26 02:50 3.4K 
[TXT]BismarckSequenceContextFilter.py2025-04-15 23:53 3.4K 
[TXT]SingleMoleculeCorrelation-annotateTSSs-scatter_plot.py2018-11-30 10:13 3.5K 
[TXT]annotatePlusOneNucleosomes.py2018-11-26 13:47 3.9K 
[TXT]SingleMoleculeCorrelation-annotateTSSs-with-HiC.py2018-10-08 13:01 4.0K 
[TXT]AverageMethylationPerRegion-V2.py2025-05-22 03:16 4.0K 
[TXT]TomboStatsParse.py2018-04-30 17:13 4.0K 
[TXT]SingleMoleculeCorrelation-annotateTSSs-expression-correlation.py2018-10-08 15:46 4.3K 
[TXT]SingleMoleculeCorrelation-annotateTSSs-with-expression.py2018-12-17 12:59 4.3K 
[TXT]BismarckCovBias.py2025-05-24 15:03 4.3K 
[TXT]coverage_to_wig.py2019-05-05 04:25 4.4K 
[TXT]ONT_methylation_status_of_neighboring_positions.py2018-08-10 10:55 4.9K 
[TXT]AverageNMIfromBED.py2025-05-28 09:20 5.0K 
[TXT]MethylationPercentageSmooth-dSMF.py2025-05-22 03:03 5.1K 
[TXT]MethylationPercentageContext.py2018-04-24 09:00 5.3K 
[TXT]ONT_methylation_sequence_bias.py2018-08-10 09:14 5.3K 
[TXT]MetanucleosomePlot1D.py2019-08-16 09:57 5.6K 
[TXT]megalodon-to-single_line.py2023-05-14 10:57 5.8K 
[TXT]filterFullyMethylatedReads.py2018-11-18 08:22 6.3K 
[TXT]MetanucleosomePlot2D.py2018-11-28 00:00 6.3K 
[TXT]signalAroundPeaks-nano-tabix.py2025-04-17 21:04 7.0K 
[TXT]TomboSingleReadsExtract.py2018-05-14 18:02 7.1K 
[TXT]TomboSingleReadsExtract-V2.py2018-05-25 08:08 7.2K 
[TXT]minimapBAMextractCT.py2025-04-01 15:36 7.5K 
[TXT]SingleMoleculeCorrelation-NMI-matrix-C-BAM.py2025-05-25 13:03 7.8K 
[TXT]signalAroundPeaks-nano-V2.py2026-02-17 20:44 8.1K 
[TXT]signalAroundPeaks-nano.py2025-05-31 06:19 8.2K 
[TXT]SMAC-footprints-from-methylation-reads-tsv-all-sites.py2018-12-05 19:53 8.8K 
[TXT]MetagenePlot2D.py2018-12-05 19:17 8.9K 
[TXT]SingleMoleculeCorrelation.py2018-07-06 16:17 9.0K 
[TXT]SingleMoleculeCorrelation-JSD-matrix.py2018-08-08 15:19 9.2K 
[TXT]SingleMoleculeCorrelation-NMI-matrix.py2018-12-03 21:00 9.8K 
[TXT]methylation-reads-tsv-to_coverage.py2023-11-19 16:33 9.8K 
[ ]SingleMoleculeCorrelation_NMI_matrix.pyx2019-01-24 23:05 9.9K 
[TXT]SingleMoleculeCorrelation-TFsTombo1.3.py2018-07-06 16:45 11K 
[TXT]SMAC-footprints-from-methylation-reads-tsv-tabix-all-sites.py2025-04-18 17:34 11K 
[TXT]SMAC-footprints-from-methylation-reads-tsv-SecondFormat.py2018-05-03 13:40 12K 
[TXT]SingleMoleculeCorrelation-empirical.py2018-07-23 07:08 13K 
[TXT]SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans-all-sites.py2025-05-31 10:37 13K 
[TXT]dSMF-footprints.py2025-04-18 14:48 14K 
[TXT]CtoT_HISAT-3N-extract.py2025-03-04 17:28 15K 
[TXT]SingleMoleculeCorrelation-empirical-quantiles.py2018-11-30 14:29 15K 
[TXT]SingleMoleculeStatesOverPositionsInARegion----broken.py2018-12-10 18:41 15K 
[TXT]TomboSingleReadsExtract-tombo_de_novo.py2023-11-06 01:39 16K 
[TXT]TomboSingleReadsExtract-tombo_de_novo-1.5-py3.py2023-02-02 14:40 17K 
[TXT]TomboSingleReadsExtract-tombo_de_novo-1.5.py2019-10-20 23:45 17K 
[TXT]doradoBAMextract-plus-only.py2023-11-18 10:53 17K 
[TXT]SMAC-footprints-from-methylation-reads-tsv.py2018-05-04 13:41 18K 
[TXT]SingleMoleculeStatesOverPositionsInARegion-kmeans.py2018-12-10 21:17 18K 
[TXT]doradoBAMextract.py2024-09-21 23:21 18K 
[TXT]SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py2025-04-18 14:36 19K 
[TXT]SMAC-footprints-from-methylation-reads-tsv-tabix.py2019-11-08 12:34 19K 
[TXT]SingleMoleculeCorrelation_NMI_matrix.c2019-01-24 23:11 496K 
[ ]SingleMoleculeCorrelation_NMI_matrix.so2019-01-24 23:11 1.0M 
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