Index of /kundaje/marinovg/oak/various/code/assembly

	Name	Last modified	Size	Description
	Parent Directory		-
	Csp9_assembly_scripts_26apr2012/	2012-04-26 20:32	-
	TBLOut-fix.py	2015-04-24 00:12	807
	fastaBasePairs.py	2012-05-19 07:23	813
	Velvet_installation	2012-05-24 17:58	921
	fastqBasePairs.py	2015-02-09 11:53	1.2K
	reverseMatePairFasta.py	2012-06-05 23:09	1.2K
	SplitCombinedFastaEnds.py	2012-05-19 08:33	1.2K
	Prodigal_to_GTF-------unfinished.py	2014-10-05 03:29	1.3K
	SRAFASTQTrinityRename.py	2017-10-26 15:40	1.3K
	contigsFromScaffolds.py	2012-06-24 11:00	1.4K
	Remove--FromFastq.py	2013-09-04 18:29	1.4K
	PANTHER_add_names.py	2015-12-18 08:19	1.4K
	TopBLASTHits.py	2012-10-15 16:36	1.6K
	TELL-seq-BC-histogram.py	2021-02-16 08:57	1.6K
	getOrthologousGenes.py	2009-05-23 22:41	1.7K
	PFAMDomainCombination.py	2015-07-16 20:43	1.8K
	rnammerToGTF.py	2015-11-01 15:42	1.8K
	filterFASTQByReadLength.py	2013-11-04 07:28	1.9K
	reverseMatePair.py	2013-12-04 04:05	2.1K
	fastaConsolidateContigs.py	2022-04-09 12:42	2.2K
	RASTToGTF.py	2015-05-16 04:40	2.2K
	AssemblyStats.py	2017-10-19 21:27	2.2K
	kmerCluster.py	2019-01-09 15:02	2.4K
	N50N90.py	2019-07-12 22:19	2.5K
	DomanCountsPerGeneDistribution.py	2019-05-08 12:47	2.5K
	SuperMatrix.py	2015-10-12 13:55	2.7K
	TBLOutHitsToFastaFilter.py	2015-04-29 12:04	2.7K
	PFAMparse.py	2015-06-02 05:37	2.8K
	splitfastq.py	2013-07-23 22:08	2.9K
	resortPEFasta.py	2012-06-05 23:00	3.1K
	contigsToReads.py	2012-06-24 13:28	3.4K
	cmscanToGTF.py	2015-05-16 04:22	3.7K
	PFAMtoGO.py	2015-06-15 05:04	3.9K
	SortPEFASTQ.py	2019-01-06 09:39	4.0K
	GTF-to-TBL.py	2018-06-27 06:33	4.1K
	GFF-RAST-to-TBL-PC-Prok.py	2015-01-24 04:50	4.1K
	resortPEFastq2.py	2012-05-19 08:40	4.2K
	ORFfinder-transcriptome-assembly-filter.py	2019-04-03 20:31	4.4K
	SyntenicBlocksFromOMA-Paralogous.py	2016-06-14 12:26	6.9K
	InterleaveFASTQ.py	2013-11-20 10:17	7.1K
	filterFASTQ.py	2013-03-26 22:52	7.6K
	GTFtoTBL-NonCodingProk.py	2015-01-26 22:04	7.9K
	count_fasta_residues.pl	2012-06-22 17:06	7.9K
	kmerFilter.py	2012-05-13 05:32	9.2K
	Phred64ToPhred33.py	2013-05-26 10:01	11K
	Csp9_assembly_scripts_26apr2012.tar.gz	2012-04-27 17:03	11K
	SyntenicBlocksFromOMA.py	2016-04-06 18:45	12K
	ORFfinder.py	2019-04-07 22:02	16K
	ORFfromgtf2.py	2016-03-15 18:58	17K
	Caeno_sp9_assembly_notes_26apr2012.txt	2012-04-27 17:03	112K