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#                                #
# Last modified 2017/11/01       # 
#                                #
# Georgi Marinov                 #
#                                # 
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import sys
import string
import math
import numpy as np
import os
import keras
from keras.models import Sequential
from keras.layers.core import Dropout, Reshape, Dense, Activation, Flatten
from keras.layers.convolutional import Convolution2D, MaxPooling2D
from keras.optimizers import Adadelta, SGD, RMSprop;
from keras.constraints import maxnorm;
from keras.layers.advanced_activations import PReLU
from keras.layers.normalization import BatchNormalization
from keras.regularizers import l1, l2, activity_l1, activity_l2

DNADict = {'A':'T','T':'A','G':'C','C':'G','N':'N','K':'K','Y':'Y','S':'S','W':'W','M':'M','R':'R'}

def run():

    if len(sys.argv) < 2:
        print 'usage: python %s config outfilename' % sys.argv[0]
        sys.exit(1)

    config = sys.argv[1]
    outfilename = sys.argv[2]

    linelist = open(config)
    for line in linelist:
        if line.startswith('#') or line.strip() == '':
            continue
        fields = line.strip().split('\t')


run()