Index of /kundaje/marinovg/oak/various/code/ChIP

	Name	Last modified	Size	Description
	Parent Directory		-
	AMEcombine-V2.py	2018-10-01 15:03	2.1K
	AMEcombine.py	2017-01-02 01:08	2.4K
	ChIP-over-TSS-vs-expression.py	2011-03-11 06:35	6.9K
	CoAssociationFisherFromCombinePeaks-Cluster.py	2018-05-21 12:58	2.8K
	CoAssociationFisherFromCombinePeaks.py	2018-07-27 08:05	5.3K
	ERANGE-multiple-to-gene-stie-matrix.py	2009-11-06 18:49	9.7K
	FIMOBiDirectionalMotifs.py	2017-07-11 21:44	4.2K
	FIMOmotifsInRegions.py	2017-05-10 09:12	3.4K
	FIMOoutputAnnotate.py	2019-04-03 19:55	2.0K
	GEM-output-to-BED.py	2013-12-21 21:28	1.3K
	Logomaker-multiple.py	2025-05-26 09:12	3.6K
	Logomaker.py	2023-12-13 03:26	2.3K
	MEMEbits.py	2018-06-13 08:26	1.7K
	MEMEtoHOMER.py	2017-12-12 07:31	1.5K
	MotifsRelativePositions-to-heatmap.py	2016-10-29 01:41	2.2K
	MotifsRelativePositions.py	2016-10-23 02:33	10K
	NearestPeaks-combine.py	2025-04-17 08:26	4.8K
	NearestPeaks.py	2025-04-17 08:13	4.2K
	NearestTSSToRegionFromGTFWithExpression.py	2011-08-30 21:26	4.6K
	NearestTSSfromGTF.py	2021-09-15 04:45	6.7K
	Peaks-vs-Introns-Exons-Intergenic.py	2012-12-30 03:43	6.3K
	RCADEtoMEME.py	2023-09-13 20:28	3.5K
	RPMsum.py	2018-03-27 06:20	1.2K
	RPMsumERANGE.py	2010-06-26 17:18	1.2K
	SICERoutputtobed.py	2009-07-01 18:39	1.1K
	TFMoDiSCOtoMEME-subpatterns.py	2025-01-28 12:22	7.1K
	TFMoDiSCOtoMEME.py	2025-01-13 00:18	6.1K
	TFOverlapMatrix.py	2019-09-25 17:18	11K
	TSS-Coverage-by-peaks.py	2011-03-08 20:59	2.8K
	TSSDistanceStats.py	2011-03-05 09:33	1.9K
	WigProfileAroundMotif-JASPAR-AME-FIMO-multiple.py	2017-03-24 18:20	12K
	WigProfileAroundMotif-JASPAR-AME-FIMO.py	2017-03-22 13:15	8.9K
	bed-vs-peaks.py	2011-02-23 19:16	1.8K
	combinePeaks.py	2024-10-03 04:17	6.5K
	commoncode.py	2010-09-28 13:20	69K
	commoncode.pyc	2014-08-14 02:54	50K
	cuffdiff-vs-TSSDistance.py	2011-03-07 08:21	4.9K
	distanceToTSS.py	2011-03-07 18:39	5.1K
	filterIDRpeaks.py	2013-01-06 15:24	1.3K
	getBindingSitesRelativeToTSS.py	2009-05-07 06:57	18K
	getBindingSitesRelativeToTSSFromgetallgenes.py	2009-05-07 06:57	3.5K
	get_IDR_peaks.py	2019-02-15 11:09	1.5K
	getallNRSEmodified.py	2009-06-27 13:12	12K
	getallsites-modified.py	2010-09-28 13:14	5.8K
	getallsites_to_bed.py	2011-03-01 04:19	1.2K
	hts_to_peak_radius_bed.py	2011-05-10 19:07	890
	interactomeERANGE.py	2010-07-03 02:22	4.4K
	interactomeMACS.py	2010-07-03 02:22	4.4K
	logo_from_DREMEoutput.py	2011-05-10 20:18	2.4K
	logo_from_HOMERoutput.py	2017-12-13 16:16	2.2K
	logo_from_meme.py	2017-06-19 20:49	3.1K
	motifPairs.py	2025-06-10 11:01	6.8K
	motifs-vs-peaks-ERANGE.py	2010-11-06 18:39	2.3K
	motifs-vs-peaks-MACS.py	2010-11-06 18:42	2.3K
	motifs-vs-peaks-Pouya.py	2011-06-30 07:35	2.8K
	motifs-vs-peaks-generic.py	2018-05-12 09:28	4.0K
	motifs-vs-peaks-narrowPeak.py	2011-10-04 11:30	2.6K
	nearest2TSSs.py	2011-03-22 10:32	2.6K
	nearestTSS.py	2010-01-30 13:53	2.0K
	peak-vs-getallsites.py	2009-09-14 21:51	2.2K
	peakXSusIGV-to-bed.py	2018-01-18 08:33	1.3K
	processing_commands-multi.py	2025-01-02 13:11	15K
	processing_commands.py	2025-04-14 13:39	16K
	referenceChIPNormalizationFactor.py	2019-01-05 12:20	2.5K
	regionIntersection-combinedOuput.py	2019-09-25 17:19	4.8K
	regionIntersection.py	2012-09-14 18:25	9.3K
	regionIntersection_BigDataSets-overlapping_regions.py	2022-12-16 21:34	6.6K
	regionIntersection_BigDataSets.py	2019-09-25 17:19	5.2K
	repeatEnrichment.py	2011-04-12 21:24	4.8K