python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ABI19_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ABI19_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ABI19_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ABI19_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ABI34_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ABI34_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ABI34_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ABI34_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ABI8_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ABI8_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ABI8_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ABI8_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF10_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF10_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF13_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF13_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF14_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF14_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF16_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF16_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF18_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF18_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF25_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF25_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF27_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF27_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF29_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF29_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF34_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF34_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF35_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF35_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF36_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF36_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF39_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF39_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF4_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF4_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARF7_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARF7_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARR5_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARR5_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ARR5_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ARR5_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BAF1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BAF1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BAF1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BAF1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BAFL12_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BAFL12_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BAFL3_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BAFL3_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH106_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH106_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH106_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH106_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH113_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH113_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH113_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH113_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH125_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH125_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH135_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH135_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH135_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH135_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH149_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH149_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH149_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH149_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH14_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH14_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH150_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH150_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH150_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH150_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH168_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH168_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH17_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH17_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH17_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH17_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH52_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH52_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH52_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH52_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH57_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH57_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH57_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH57_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH61_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH61_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH61_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH61_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH67_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH67_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH67_BA1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH67_BA1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH85_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH85_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH85_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH85_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH91_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH91_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH91_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH91_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH99_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH99_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BHLH99_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BHLH99_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP105_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP105_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP105_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP105_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP106_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP106_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP106_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP106_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP111_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP111_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP111_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP111_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP112_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP112_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP112_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP112_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP115_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP115_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP115_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP115_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP124_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP124_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP124_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP124_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP128_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP128_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP128_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP128_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP12_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP12_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP12_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP12_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP13_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP13_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP13_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP13_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP160_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP160_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP160_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP160_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP21_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP21_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP21_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP21_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP23_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP23_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP23_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP23_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP25_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP25_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP25_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP25_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP27_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP27_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP27_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP27_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP34_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP34_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP34_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP34_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP39_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP39_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP39_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP39_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP40_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP40_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP40_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP40_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP41_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP41_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP41_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP41_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP48_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP48_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP48_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP48_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP52_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP52_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP52_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP52_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP54_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP54_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP54_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP54_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP57_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP57_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP58_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP58_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP58_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP58_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP61_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP61_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP61_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP61_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP62_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP62_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP62_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP62_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP68_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP68_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP68_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP68_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP70_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP70_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP70_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP70_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP72_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP72_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP79_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP79_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP79_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP79_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP84_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP84_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP84_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP84_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP86_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP86_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP86_rep1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP86_rep1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP86_rep2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP86_rep2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP87_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP87_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP87_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP87_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP90_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP90_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP90_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP90_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP91_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP91_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP91_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP91_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP92_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP92_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP92_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP92_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP94_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP94_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP94_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP94_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP96_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP96_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP99_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP99_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZIP99_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZIP99_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZR1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZR1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- BZR1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes BZR1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- CA2P13_CA3P1_CA5P7_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CA2P13_CA3P1_CA5P7_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- CA2P13_CA3P1_CA5P7_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CA2P13_CA3P1_CA5P7_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- CA2P13_CA3P4_CA5P7_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CA2P13_CA3P4_CA5P7_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- CA2P13_CA3P4_CA5P7_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CA2P13_CA3P4_CA5P7_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- CCHH2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CCHH2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- CCHH2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CCHH2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH113_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH113_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH113_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH113_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH135_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH135_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH135_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH135_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH14_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH14_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH14_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH14_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH150_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH150_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH150_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH150_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH52_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH52_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH52_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH52_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH61_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH61_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH61_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH61_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH67_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH67_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH67_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH67_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH85_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH85_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH85_BHLH125_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH85_BHLH125_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH85_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH85_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH92_BHLH125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH92_BHLH125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DD_BHLH92_BHLH168_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DD_BHLH92_BHLH168_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DOF1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DOF1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DOF1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DOF1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DOF24_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DOF24_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- DOF24_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes DOF24_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB126_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB126_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB126_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB126_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB138_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB138_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB145_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB145_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB145_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB145_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB149_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB149_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB149_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB149_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB183_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB183_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB183_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB183_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB201_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB201_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB201_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB201_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB24_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB24_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB29_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB29_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB36_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB36_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB36_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB36_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB46_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB46_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB46_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB46_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB49_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB49_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB49_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB49_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB4_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB4_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB4_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB4_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB53_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB53_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB53_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB53_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB87_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB87_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- EREB87_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes EREB87_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GATA20_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GATA20_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GATA20_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GATA20_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GBP10_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GBP10_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GBP10_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GBP10_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GBP11_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GBP11_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GBP11_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GBP11_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GBP4_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GBP4_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GBP4_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GBP4_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK17_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK17_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK17_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK17_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK20_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK20_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK20_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK20_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK21_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK21_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK21_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK21_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK44_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK44_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK44_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK44_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK47_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK47_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK47_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK47_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK48_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK48_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK48_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK48_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK53_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK53_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK53_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK53_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK56_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK56_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GLK56_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GLK56_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF3_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF3_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF3_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF3_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF6_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF6_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF6_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF6_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF7_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF7_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF7_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF7_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF9_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF9_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRF9_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes GRF9_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HALO-GST_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HALO-GST_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB102_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB102_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB102_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB102_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB117_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB117_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB117_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB117_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB122_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB122_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB122_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB122_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB15_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB15_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB15_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB15_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB22_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB22_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB22_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB22_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB54_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB54_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB54_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB54_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB67_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB67_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB67_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB67_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB68_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB68_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB68_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HB68_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF10_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF10_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF10_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF10_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF24_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF24_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF24_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF24_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF25_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF25_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF25_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF25_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF7_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF7_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF7_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes HSF7_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LBD16_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes LBD16_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LBD19_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes LBD19_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LBD37_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes LBD37_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LBD37_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes LBD37_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LBD5_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes LBD5_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS12_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS12_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS12_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS12_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS43_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS43_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS43_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS43_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS68_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS68_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS68_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS68_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS69_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS69_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS69_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS69_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS72_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS72_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS72_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS72_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS73_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS73_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MADS73_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MADS73_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB131_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB131_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB131_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB131_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB138_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB138_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB138_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB138_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB40_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB40_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB40_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB40_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB50_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB50_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB50_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB50_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB73_DED1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB73_DED1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB83_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB83_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB83_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB83_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB94_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYB94_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR101_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR101_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR101_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR101_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR111_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR111_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR111_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR111_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR17_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR17_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR17_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR17_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR52_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR52_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR52_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR52_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR58_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR58_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYBR58_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes MYBR58_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC115_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC115_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC115_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC115_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC116_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC116_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC116_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC116_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC12_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC12_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC12_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC12_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC20_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC20_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC20_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC20_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC25_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC25_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC25_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC25_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC27_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC27_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC27_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC27_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC28_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC28_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC28_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC28_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC33_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC33_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC33_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC33_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC3_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC3_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC3_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC3_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC42_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC42_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC42_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC42_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC49_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC49_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC49_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC49_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC71_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC71_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC71_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC71_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC74_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC74_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC74_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC74_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC86_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC86_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC86_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC86_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC91_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NAC91_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NFYA1_LEC1_CA5P16_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NFYA1_LEC1_CA5P16_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NFYA1_LEC1_CA5P16_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NFYA1_LEC1_CA5P16_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NKD1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NKD1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NKD1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NKD1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NKD2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NKD2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NKD2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NKD2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NLP14_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NLP14_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NLP14_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes NLP14_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP15_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP15_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP15_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP15_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP30_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP30_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP30_rep1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP30_rep1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP30_rep2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP30_rep2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP32_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP32_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP32_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP32_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP6_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP6_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP8_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes SBP8_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP11_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP11_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP11_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP11_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP15_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP15_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP15_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP15_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP30_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP30_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP30_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP30_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP3_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP3_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP4_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP4_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP4_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP4_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP5_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP5_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP5_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP5_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP8_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP8_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- TCP8_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes TCP8_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- THX16_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX16_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- THX16_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX16_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- THX20_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX20_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- THX20_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX20_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- THX26_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX26_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- THX26_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX26_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY11_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY11_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY11_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY11_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY125_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY125_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY125_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY125_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY53_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY53_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY53_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY53_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY57_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY57_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY57_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY57_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY64_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY64_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY64_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY64_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY82_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY82_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY82_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes WRKY82_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- YAB2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes YAB2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- YAB2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes YAB2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD15_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD15_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD15_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD15_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD1_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD1_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD1_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD1_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD21_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD21_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD21_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD21_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD4_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD4_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD4_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD4_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD5_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD5_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZHD5_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZHD5_Mo17.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZIM2_B73.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZIM2_B73.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZIM2_Mo17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes ZIM2_Mo17.SE.a.wig -notitle -RPM -uniqueBAM