/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL1G11460.t1_S_tuberosum_DM_1-3-516-R44_DAPi712A10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL1G11460.t1_S_tuberosum_DM_1-3-516-R44_DAPi712A10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL1G23550.t1_S_tuberosum_DM_1-3-516-R44_DAPi712B03-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL1G23550.t1_S_tuberosum_DM_1-3-516-R44_DAPi712B03-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL1G53260.t1_S_tuberosum_DM_1-3-516-R44_DAPi712B01-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL1G53260.t1_S_tuberosum_DM_1-3-516-R44_DAPi712B01-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL2G28980.t1_S_tuberosum_DM_1-3-516-R44_DAPi712H11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL2G28980.t1_S_tuberosum_DM_1-3-516-R44_DAPi712H11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL2G32420.t2_S_tuberosum_DM_1-3-516-R44_DAPi712F10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL2G32420.t2_S_tuberosum_DM_1-3-516-R44_DAPi712F10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL2G40550.t1_S_tuberosum_DM_1-3-516-R44_DAPi712C11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL2G40550.t1_S_tuberosum_DM_1-3-516-R44_DAPi712C11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL3G23910.t2_S_tuberosum_DM_1-3-516-R44_DAPi712E07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL3G23910.t2_S_tuberosum_DM_1-3-516-R44_DAPi712E07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL4G38490.t1_S_tuberosum_DM_1-3-516-R44_DAPi712G08-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL4G38490.t1_S_tuberosum_DM_1-3-516-R44_DAPi712G08-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL4G45550.t1_S_tuberosum_DM_1-3-516-R44_DAPi712H06-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL4G45550.t1_S_tuberosum_DM_1-3-516-R44_DAPi712H06-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL8G10650.t1_S_tuberosum_DM_1-3-516-R44_DAPi712D09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL8G10650.t1_S_tuberosum_DM_1-3-516-R44_DAPi712D09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AL8G13510.t2_S_tuberosum_DM_1-3-516-R44_DAPi712B08-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AL8G13510.t2_S_tuberosum_DM_1-3-516-R44_DAPi712B08-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G01060_S_tuberosum_DM_1-3-516-R44_DAPi712H05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G01060_S_tuberosum_DM_1-3-516-R44_DAPi712H05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G12260_S_tuberosum_DM_1-3-516-R44_DAPi712C12-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G12260_S_tuberosum_DM_1-3-516-R44_DAPi712C12-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G13260_S_tuberosum_DM_1-3-516-R44_DAPi712E01-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G13260_S_tuberosum_DM_1-3-516-R44_DAPi712E01-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G18330_S_tuberosum_DM_1-3-516-R44_DAPi712G01-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G18330_S_tuberosum_DM_1-3-516-R44_DAPi712G01-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G20910_S_tuberosum_DM_1-3-516-R44_DAPi712B10-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G20910_S_tuberosum_DM_1-3-516-R44_DAPi712B10-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G20980_S_tuberosum_DM_1-3-516-R44_DAPi712E11-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G20980_S_tuberosum_DM_1-3-516-R44_DAPi712E11-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G27730_S_tuberosum_DM_1-3-516-R44_DAPi712C01-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G27730_S_tuberosum_DM_1-3-516-R44_DAPi712C01-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G29160_S_tuberosum_DM_1-3-516-R44_DAPi712B04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G29160_S_tuberosum_DM_1-3-516-R44_DAPi712B04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G33240_S_tuberosum_DM_1-3-516-R44_DAPi712F03-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G33240_S_tuberosum_DM_1-3-516-R44_DAPi712F03-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G46768_S_tuberosum_DM_1-3-516-R44_DAPi712G04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G46768_S_tuberosum_DM_1-3-516-R44_DAPi712G04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G49480_S_tuberosum_DM_1-3-516-R44_DAPi712A04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G49480_S_tuberosum_DM_1-3-516-R44_DAPi712A04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G52880_S_tuberosum_DM_1-3-516-R44_DAPi712E12-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G52880_S_tuberosum_DM_1-3-516-R44_DAPi712E12-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G69180_S_tuberosum_DM_1-3-516-R44_DAPi712G05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G69180_S_tuberosum_DM_1-3-516-R44_DAPi712G05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G69690_S_tuberosum_DM_1-3-516-R44_DAPi712C02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G69690_S_tuberosum_DM_1-3-516-R44_DAPi712C02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G69780_S_tuberosum_DM_1-3-516-R44_DAPi712A03-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G69780_S_tuberosum_DM_1-3-516-R44_DAPi712A03-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G72740_S_tuberosum_DM_1-3-516-R44_DAPi712G09-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G72740_S_tuberosum_DM_1-3-516-R44_DAPi712G09-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G74480_S_tuberosum_DM_1-3-516-R44_DAPi712D07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G74480_S_tuberosum_DM_1-3-516-R44_DAPi712D07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G76420_S_tuberosum_DM_1-3-516-R44_DAPi712C09-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G76420_S_tuberosum_DM_1-3-516-R44_DAPi712C09-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G76880_S_tuberosum_DM_1-3-516-R44_DAPi712F11-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G76880_S_tuberosum_DM_1-3-516-R44_DAPi712F11-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G79580_S_tuberosum_DM_1-3-516-R44_DAPi712B09-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G79580_S_tuberosum_DM_1-3-516-R44_DAPi712B09-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT1G80840_S_tuberosum_DM_1-3-516-R44_DAPi712G03-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT1G80840_S_tuberosum_DM_1-3-516-R44_DAPi712G03-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G01060_S_tuberosum_DM_1-3-516-R44_DAPi712F05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G01060_S_tuberosum_DM_1-3-516-R44_DAPi712F05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G01930_S_tuberosum_DM_1-3-516-R44_DAPi712D05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G01930_S_tuberosum_DM_1-3-516-R44_DAPi712D05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G01940_S_tuberosum_DM_1-3-516-R44_DAPi712G08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G01940_S_tuberosum_DM_1-3-516-R44_DAPi712G08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G02820_S_tuberosum_DM_1-3-516-R44_DAPi712F08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G02820_S_tuberosum_DM_1-3-516-R44_DAPi712F08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G18550_S_tuberosum_DM_1-3-516-R44_DAPi712E07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G18550_S_tuberosum_DM_1-3-516-R44_DAPi712E07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G22430_S_tuberosum_DM_1-3-516-R44_DAPi712H02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G22430_S_tuberosum_DM_1-3-516-R44_DAPi712H02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G30250_S_tuberosum_DM_1-3-516-R44_DAPi712H03-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G30250_S_tuberosum_DM_1-3-516-R44_DAPi712H03-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G40620_S_tuberosum_DM_1-3-516-R44_DAPi712B12-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G40620_S_tuberosum_DM_1-3-516-R44_DAPi712B12-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G45420_S_tuberosum_DM_1-3-516-R44_DAPi712F06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G45420_S_tuberosum_DM_1-3-516-R44_DAPi712F06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G45480_S_tuberosum_DM_1-3-516-R44_DAPi712F09-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G45480_S_tuberosum_DM_1-3-516-R44_DAPi712F09-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G46270_S_tuberosum_DM_1-3-516-R44_DAPi712H11-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G46270_S_tuberosum_DM_1-3-516-R44_DAPi712H11-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT2G47070_S_tuberosum_DM_1-3-516-R44_DAPi712H10-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT2G47070_S_tuberosum_DM_1-3-516-R44_DAPi712H10-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G02940_S_tuberosum_DM_1-3-516-R44_DAPi712H04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G02940_S_tuberosum_DM_1-3-516-R44_DAPi712H04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G08500_S_tuberosum_DM_1-3-516-R44_DAPi712B05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G08500_S_tuberosum_DM_1-3-516-R44_DAPi712B05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G12250_S_tuberosum_DM_1-3-516-R44_DAPi712A07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G12250_S_tuberosum_DM_1-3-516-R44_DAPi712A07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G18990_S_tuberosum_DM_1-3-516-R44_DAPi712D11-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G18990_S_tuberosum_DM_1-3-516-R44_DAPi712D11-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G27010_S_tuberosum_DM_1-3-516-R44_DAPi712C04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G27010_S_tuberosum_DM_1-3-516-R44_DAPi712C04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G50060_S_tuberosum_DM_1-3-516-R44_DAPi712G02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G50060_S_tuberosum_DM_1-3-516-R44_DAPi712G02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G50260_S_tuberosum_DM_1-3-516-R44_DAPi712D02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G50260_S_tuberosum_DM_1-3-516-R44_DAPi712D02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G50410_S_tuberosum_DM_1-3-516-R44_DAPi712H06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G50410_S_tuberosum_DM_1-3-516-R44_DAPi712H06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G56400_S_tuberosum_DM_1-3-516-R44_DAPi712B02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G56400_S_tuberosum_DM_1-3-516-R44_DAPi712B02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G57920_S_tuberosum_DM_1-3-516-R44_DAPi712D06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G57920_S_tuberosum_DM_1-3-516-R44_DAPi712D06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT3G60530_S_tuberosum_DM_1-3-516-R44_DAPi712E05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT3G60530_S_tuberosum_DM_1-3-516-R44_DAPi712E05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G00730_S_tuberosum_DM_1-3-516-R44_DAPi712C11-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G00730_S_tuberosum_DM_1-3-516-R44_DAPi712C11-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G14770_S_tuberosum_DM_1-3-516-R44_DAPi712F10-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G14770_S_tuberosum_DM_1-3-516-R44_DAPi712F10-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G17980_S_tuberosum_DM_1-3-516-R44_DAPi712E10-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G17980_S_tuberosum_DM_1-3-516-R44_DAPi712E10-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G25470_S_tuberosum_DM_1-3-516-R44_DAPi712B06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G25470_S_tuberosum_DM_1-3-516-R44_DAPi712B06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G25480_S_tuberosum_DM_1-3-516-R44_DAPi712F04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G25480_S_tuberosum_DM_1-3-516-R44_DAPi712F04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G25490_S_tuberosum_DM_1-3-516-R44_DAPi712A08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G25490_S_tuberosum_DM_1-3-516-R44_DAPi712A08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT4G31800_S_tuberosum_DM_1-3-516-R44_DAPi712F02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT4G31800_S_tuberosum_DM_1-3-516-R44_DAPi712F02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G02320_S_tuberosum_DM_1-3-516-R44_DAPi712G06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G02320_S_tuberosum_DM_1-3-516-R44_DAPi712G06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G03150_S_tuberosum_DM_1-3-516-R44_DAPi712D08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G03150_S_tuberosum_DM_1-3-516-R44_DAPi712D08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G03790_S_tuberosum_DM_1-3-516-R44_DAPi712C06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G03790_S_tuberosum_DM_1-3-516-R44_DAPi712C06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G05550_S_tuberosum_DM_1-3-516-R44_DAPi712A10-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G05550_S_tuberosum_DM_1-3-516-R44_DAPi712A10-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G09410_S_tuberosum_DM_1-3-516-R44_DAPi712G11-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G09410_S_tuberosum_DM_1-3-516-R44_DAPi712G11-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G10030_S_tuberosum_DM_1-3-516-R44_DAPi712A06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G10030_S_tuberosum_DM_1-3-516-R44_DAPi712A06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G11260_S_tuberosum_DM_1-3-516-R44_DAPi712D12-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G11260_S_tuberosum_DM_1-3-516-R44_DAPi712D12-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G14960_S_tuberosum_DM_1-3-516-R44_DAPi712E08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G14960_S_tuberosum_DM_1-3-516-R44_DAPi712E08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G17300_S_tuberosum_DM_1-3-516-R44_DAPi712H08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G17300_S_tuberosum_DM_1-3-516-R44_DAPi712H08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G18560_S_tuberosum_DM_1-3-516-R44_DAPi712H07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G18560_S_tuberosum_DM_1-3-516-R44_DAPi712H07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G19790_S_tuberosum_DM_1-3-516-R44_DAPi712G07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G19790_S_tuberosum_DM_1-3-516-R44_DAPi712G07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G39760_S_tuberosum_DM_1-3-516-R44_DAPi712A02-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G39760_S_tuberosum_DM_1-3-516-R44_DAPi712A02-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G45300_S_tuberosum_DM_1-3-516-R44_DAPi712G10-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G45300_S_tuberosum_DM_1-3-516-R44_DAPi712G10-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G47390_S_tuberosum_DM_1-3-516-R44_DAPi712F01-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G47390_S_tuberosum_DM_1-3-516-R44_DAPi712F01-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G52830_S_tuberosum_DM_1-3-516-R44_DAPi712F07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G52830_S_tuberosum_DM_1-3-516-R44_DAPi712F07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G56110_S_tuberosum_DM_1-3-516-R44_DAPi712E06-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G56110_S_tuberosum_DM_1-3-516-R44_DAPi712E06-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G60130_S_tuberosum_DM_1-3-516-R44_DAPi712C07-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G60130_S_tuberosum_DM_1-3-516-R44_DAPi712C07-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G62020_S_tuberosum_DM_1-3-516-R44_DAPi712E04-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G62020_S_tuberosum_DM_1-3-516-R44_DAPi712E04-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G62470_S_tuberosum_DM_1-3-516-R44_DAPi712C08-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G62470_S_tuberosum_DM_1-3-516-R44_DAPi712C08-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G62940_S_tuberosum_DM_1-3-516-R44_DAPi712A05-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G62940_S_tuberosum_DM_1-3-516-R44_DAPi712A05-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G64750_S_tuberosum_DM_1-3-516-R44_DAPi712E03-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G64750_S_tuberosum_DM_1-3-516-R44_DAPi712E03-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G65410_S_tuberosum_DM_1-3-516-R44_DAPi712D03-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G65410_S_tuberosum_DM_1-3-516-R44_DAPi712D03-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t AT5G67300_S_tuberosum_DM_1-3-516-R44_DAPi712B01-ORGi5012-96P220.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n AT5G67300_S_tuberosum_DM_1-3-516-R44_DAPi712B01-ORGi5012-96P220.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0001s0116.1_S_tuberosum_DM_1-3-516-R44_DAPi712C10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0001s0116.1_S_tuberosum_DM_1-3-516-R44_DAPi712C10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0001s1194.1_S_tuberosum_DM_1-3-516-R44_DAPi712D03-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0001s1194.1_S_tuberosum_DM_1-3-516-R44_DAPi712D03-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0001s3581.1.p_S_tuberosum_DM_1-3-516-R44_DAPi712D01-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0001s3581.1.p_S_tuberosum_DM_1-3-516-R44_DAPi712D01-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0002s1646.1_S_tuberosum_DM_1-3-516-R44_DAPi712C12-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0002s1646.1_S_tuberosum_DM_1-3-516-R44_DAPi712C12-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0002s1959.1_S_tuberosum_DM_1-3-516-R44_DAPi712H10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0002s1959.1_S_tuberosum_DM_1-3-516-R44_DAPi712H10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0002s2670.1_S_tuberosum_DM_1-3-516-R44_DAPi712E11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0002s2670.1_S_tuberosum_DM_1-3-516-R44_DAPi712E11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0003s1161.1.p_S_tuberosum_DM_1-3-516-R44_DAPi712G07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0003s1161.1.p_S_tuberosum_DM_1-3-516-R44_DAPi712G07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0004s2291.1_S_tuberosum_DM_1-3-516-R44_DAPi712A09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0004s2291.1_S_tuberosum_DM_1-3-516-R44_DAPi712A09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0004s2898.1.p_S_tuberosum_DM_1-3-516-R44_DAPi712B07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0004s2898.1.p_S_tuberosum_DM_1-3-516-R44_DAPi712B07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0008s0039.1_S_tuberosum_DM_1-3-516-R44_DAPi712F09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0008s0039.1_S_tuberosum_DM_1-3-516-R44_DAPi712F09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Carub.0008s0285.1_S_tuberosum_DM_1-3-516-R44_DAPi712D08-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Carub.0008s0285.1_S_tuberosum_DM_1-3-516-R44_DAPi712D08-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os01g17260.2_S_tuberosum_DM_1-3-516-R44_DAPi712H07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os01g17260.2_S_tuberosum_DM_1-3-516-R44_DAPi712H07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os01g18240.1_S_tuberosum_DM_1-3-516-R44_DAPi712G04-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os01g18240.1_S_tuberosum_DM_1-3-516-R44_DAPi712G04-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os01g46970.1_S_tuberosum_DM_1-3-516-R44_DAPi712C07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os01g46970.1_S_tuberosum_DM_1-3-516-R44_DAPi712C07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os01g51154.1_S_tuberosum_DM_1-3-516-R44_DAPi712A11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os01g51154.1_S_tuberosum_DM_1-3-516-R44_DAPi712A11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os02g33430.1_S_tuberosum_DM_1-3-516-R44_DAPi712D05-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os02g33430.1_S_tuberosum_DM_1-3-516-R44_DAPi712D05-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os02g42970.1_S_tuberosum_DM_1-3-516-R44_DAPi712E03-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os02g42970.1_S_tuberosum_DM_1-3-516-R44_DAPi712E03-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os03g21800.1_S_tuberosum_DM_1-3-516-R44_DAPi712B09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os03g21800.1_S_tuberosum_DM_1-3-516-R44_DAPi712B09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os06g07030.1_S_tuberosum_DM_1-3-516-R44_DAPi712E01-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os06g07030.1_S_tuberosum_DM_1-3-516-R44_DAPi712E01-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os08g06110.3_S_tuberosum_DM_1-3-516-R44_DAPi712D10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os08g06110.3_S_tuberosum_DM_1-3-516-R44_DAPi712D10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os08g37970.1_S_tuberosum_DM_1-3-516-R44_DAPi712A06-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os08g37970.1_S_tuberosum_DM_1-3-516-R44_DAPi712A06-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os09g25060.1_S_tuberosum_DM_1-3-516-R44_DAPi712F11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os09g25060.1_S_tuberosum_DM_1-3-516-R44_DAPi712F11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os10g26500.1_S_tuberosum_DM_1-3-516-R44_DAPi712D12-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os10g26500.1_S_tuberosum_DM_1-3-516-R44_DAPi712D12-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LOC_Os10g41200.1_S_tuberosum_DM_1-3-516-R44_DAPi712G09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n LOC_Os10g41200.1_S_tuberosum_DM_1-3-516-R44_DAPi712G09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc01g095460.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712D07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc01g095460.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712D07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc01g102340.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712H04-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc01g102340.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712H04-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc03g116890.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712G11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc03g116890.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712G11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc04g078640.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712F01-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc04g078640.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712F01-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc05g007180.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712E12-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc05g007180.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712E12-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc06g048630.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712C09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc06g048630.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712C09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc07g040920.2.1_S_tuberosum_DM_1-3-516-R44_DAPi712B11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc07g040920.2.1_S_tuberosum_DM_1-3-516-R44_DAPi712B11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc08g068320.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712C04-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc08g068320.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712C04-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc08g078340.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712H09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc08g078340.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712H09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc08g079120.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712F03-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc08g079120.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712F03-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc10g005080.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712E10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc10g005080.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712E10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Solyc11g064950.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712A08-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n Solyc11g064950.3.1_S_tuberosum_DM_1-3-516-R44_DAPi712A08-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013586407.1_S_tuberosum_DM_1-3-516-R44_DAPi712F07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013586407.1_S_tuberosum_DM_1-3-516-R44_DAPi712F07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013587350.1_S_tuberosum_DM_1-3-516-R44_DAPi712B10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013587350.1_S_tuberosum_DM_1-3-516-R44_DAPi712B10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013587997.1_S_tuberosum_DM_1-3-516-R44_DAPi712D11-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013587997.1_S_tuberosum_DM_1-3-516-R44_DAPi712D11-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013589913.1_S_tuberosum_DM_1-3-516-R44_DAPi712G10-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013589913.1_S_tuberosum_DM_1-3-516-R44_DAPi712G10-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013589953.1_S_tuberosum_DM_1-3-516-R44_DAPi712B12-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013589953.1_S_tuberosum_DM_1-3-516-R44_DAPi712B12-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013602769.1_S_tuberosum_DM_1-3-516-R44_DAPi712C03-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013602769.1_S_tuberosum_DM_1-3-516-R44_DAPi712C03-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013609718.1_S_tuberosum_DM_1-3-516-R44_DAPi712G12-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013609718.1_S_tuberosum_DM_1-3-516-R44_DAPi712G12-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013613838.1_S_tuberosum_DM_1-3-516-R44_DAPi712C08-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013613838.1_S_tuberosum_DM_1-3-516-R44_DAPi712C08-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013615900.1_S_tuberosum_DM_1-3-516-R44_DAPi712E09-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013615900.1_S_tuberosum_DM_1-3-516-R44_DAPi712E09-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013629448.1_S_tuberosum_DM_1-3-516-R44_DAPi712H03-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013629448.1_S_tuberosum_DM_1-3-516-R44_DAPi712H03-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013631386.1_S_tuberosum_DM_1-3-516-R44_DAPi712A07-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013631386.1_S_tuberosum_DM_1-3-516-R44_DAPi712A07-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013631649.1_S_tuberosum_DM_1-3-516-R44_DAPi712B05-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013631649.1_S_tuberosum_DM_1-3-516-R44_DAPi712B05-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t XP_013634112.1_S_tuberosum_DM_1-3-516-R44_DAPi712H08-ORGi5012-96P247.PE.a.bam -c Control_TF_DNA_S_tuberosum_DM_1-3-516-R44_DAPi712A12-ORGi5012-96P247.PE.a.bam -n XP_013634112.1_S_tuberosum_DM_1-3-516-R44_DAPi712H08-ORGi5012-96P247.PE.a.MACS-2.1.0 -g 810654046 -f BAMPE