python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G11460.t1_O_sativa_Nipponbare_DAPi709A10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G11460.t1_O_sativa_Nipponbare_DAPi709A10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G11460.t1_O_sativa_Nipponbare_DAPi711A10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G11460.t1_O_sativa_Nipponbare_DAPi711A10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G11460.t1_O_sativa_Nipponbare_DAPi712A10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G11460.t1_O_sativa_Nipponbare_DAPi712A10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G23550.t1_O_sativa_Nipponbare_DAPi709B03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G23550.t1_O_sativa_Nipponbare_DAPi709B03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G23550.t1_O_sativa_Nipponbare_DAPi711B03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G23550.t1_O_sativa_Nipponbare_DAPi711B03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G23550.t1_O_sativa_Nipponbare_DAPi712B03-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G23550.t1_O_sativa_Nipponbare_DAPi712B03-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G24970.t1_O_sativa_Nipponbare_DAPi710H09-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G24970.t1_O_sativa_Nipponbare_DAPi710H09-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G24970.t1_O_sativa_Nipponbare_DAPi712H09-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G24970.t1_O_sativa_Nipponbare_DAPi712H09-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G53260.t1_O_sativa_Nipponbare_DAPi709B01-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G53260.t1_O_sativa_Nipponbare_DAPi709B01-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G53260.t1_O_sativa_Nipponbare_DAPi711B01-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G53260.t1_O_sativa_Nipponbare_DAPi711B01-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL1G53260.t1_O_sativa_Nipponbare_DAPi712B01-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL1G53260.t1_O_sativa_Nipponbare_DAPi712B01-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G28980.t1_O_sativa_Nipponbare_DAPi709H11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G28980.t1_O_sativa_Nipponbare_DAPi709H11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G28980.t1_O_sativa_Nipponbare_DAPi711H11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G28980.t1_O_sativa_Nipponbare_DAPi711H11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G28980.t1_O_sativa_Nipponbare_DAPi712H11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G28980.t1_O_sativa_Nipponbare_DAPi712H11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G32420.t2_O_sativa_Nipponbare_DAPi709F10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G32420.t2_O_sativa_Nipponbare_DAPi709F10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G32420.t2_O_sativa_Nipponbare_DAPi711F10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G32420.t2_O_sativa_Nipponbare_DAPi711F10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G32420.t2_O_sativa_Nipponbare_DAPi712F10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G32420.t2_O_sativa_Nipponbare_DAPi712F10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G34360.t1_O_sativa_Nipponbare_DAPi710E10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G34360.t1_O_sativa_Nipponbare_DAPi710E10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G34360.t1_O_sativa_Nipponbare_DAPi712E10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G34360.t1_O_sativa_Nipponbare_DAPi712E10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G40550.t1_O_sativa_Nipponbare_DAPi709C11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G40550.t1_O_sativa_Nipponbare_DAPi709C11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G40550.t1_O_sativa_Nipponbare_DAPi711C11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G40550.t1_O_sativa_Nipponbare_DAPi711C11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL2G40550.t1_O_sativa_Nipponbare_DAPi712C11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL2G40550.t1_O_sativa_Nipponbare_DAPi712C11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL3G23910.t2_O_sativa_Nipponbare_DAPi709E07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL3G23910.t2_O_sativa_Nipponbare_DAPi709E07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL3G23910.t2_O_sativa_Nipponbare_DAPi711E07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL3G23910.t2_O_sativa_Nipponbare_DAPi711E07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL3G23910.t2_O_sativa_Nipponbare_DAPi712E07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL3G23910.t2_O_sativa_Nipponbare_DAPi712E07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL3G51890.t2_O_sativa_Nipponbare_DAPi709F12-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL3G51890.t2_O_sativa_Nipponbare_DAPi709F12-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL3G51890.t2_O_sativa_Nipponbare_DAPi711F12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL3G51890.t2_O_sativa_Nipponbare_DAPi711F12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G38490.t1_O_sativa_Nipponbare_DAPi709G08-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G38490.t1_O_sativa_Nipponbare_DAPi709G08-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G38490.t1_O_sativa_Nipponbare_DAPi711G08-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G38490.t1_O_sativa_Nipponbare_DAPi711G08-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G38490.t1_O_sativa_Nipponbare_DAPi712G08-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G38490.t1_O_sativa_Nipponbare_DAPi712G08-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G44590.t1_O_sativa_Nipponbare_DAPi710B05-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G44590.t1_O_sativa_Nipponbare_DAPi710B05-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G44590.t1_O_sativa_Nipponbare_DAPi712B05-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G44590.t1_O_sativa_Nipponbare_DAPi712B05-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G45550.t1_O_sativa_Nipponbare_DAPi709H06-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G45550.t1_O_sativa_Nipponbare_DAPi709H06-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G45550.t1_O_sativa_Nipponbare_DAPi711H06-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G45550.t1_O_sativa_Nipponbare_DAPi711H06-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G45550.t1_O_sativa_Nipponbare_DAPi712H06-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G45550.t1_O_sativa_Nipponbare_DAPi712H06-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G46570.t1_O_sativa_Nipponbare_DAPi710G05-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G46570.t1_O_sativa_Nipponbare_DAPi710G05-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL4G46570.t1_O_sativa_Nipponbare_DAPi712G05-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL4G46570.t1_O_sativa_Nipponbare_DAPi712G05-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL5G10010.t1_O_sativa_Nipponbare_DAPi710E01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL5G10010.t1_O_sativa_Nipponbare_DAPi710E01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL5G10010.t1_O_sativa_Nipponbare_DAPi712E01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL5G10010.t1_O_sativa_Nipponbare_DAPi712E01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL5G11070.t1_O_sativa_Nipponbare_DAPi710F08-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL5G11070.t1_O_sativa_Nipponbare_DAPi710F08-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL5G11070.t1_O_sativa_Nipponbare_DAPi712F08-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL5G11070.t1_O_sativa_Nipponbare_DAPi712F08-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL5G42830.t1_O_sativa_Nipponbare_DAPi710D06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL5G42830.t1_O_sativa_Nipponbare_DAPi710D06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL5G42830.t1_O_sativa_Nipponbare_DAPi712D06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL5G42830.t1_O_sativa_Nipponbare_DAPi712D06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL7G19010.t1_O_sativa_Nipponbare_DAPi709G03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL7G19010.t1_O_sativa_Nipponbare_DAPi709G03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL7G19010.t1_O_sativa_Nipponbare_DAPi711G03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL7G19010.t1_O_sativa_Nipponbare_DAPi711G03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G10650.t1_O_sativa_Nipponbare_DAPi709D09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G10650.t1_O_sativa_Nipponbare_DAPi709D09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G10650.t1_O_sativa_Nipponbare_DAPi711D09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G10650.t1_O_sativa_Nipponbare_DAPi711D09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G10650.t1_O_sativa_Nipponbare_DAPi712D09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G10650.t1_O_sativa_Nipponbare_DAPi712D09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G13510.t2_O_sativa_Nipponbare_DAPi709B08-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G13510.t2_O_sativa_Nipponbare_DAPi709B08-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G13510.t2_O_sativa_Nipponbare_DAPi711B08-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G13510.t2_O_sativa_Nipponbare_DAPi711B08-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G13510.t2_O_sativa_Nipponbare_DAPi712B08-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G13510.t2_O_sativa_Nipponbare_DAPi712B08-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AL8G38770.t1_O_sativa_Nipponbare_DAPi709E02-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AL8G38770.t1_O_sativa_Nipponbare_DAPi709E02-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G01060_O_sativa_Nipponbare_DAPi712H05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G01060_O_sativa_Nipponbare_DAPi712H05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G12260_O_sativa_Nipponbare_DAPi712C12-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G12260_O_sativa_Nipponbare_DAPi712C12-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G13260_O_sativa_Nipponbare_DAPi712E01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G13260_O_sativa_Nipponbare_DAPi712E01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G18330_O_sativa_Nipponbare_DAPi712G01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G18330_O_sativa_Nipponbare_DAPi712G01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G20910_O_sativa_Nipponbare_DAPi712B10-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G20910_O_sativa_Nipponbare_DAPi712B10-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G20980_O_sativa_Nipponbare_DAPi712E11-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G20980_O_sativa_Nipponbare_DAPi712E11-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G27730_O_sativa_Nipponbare_DAPi712C01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G27730_O_sativa_Nipponbare_DAPi712C01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G29160_O_sativa_Nipponbare_DAPi712B04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G29160_O_sativa_Nipponbare_DAPi712B04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G33240_O_sativa_Nipponbare_DAPi712F03-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G33240_O_sativa_Nipponbare_DAPi712F03-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G46768_O_sativa_Nipponbare_DAPi712G04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G46768_O_sativa_Nipponbare_DAPi712G04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G49480_O_sativa_Nipponbare_DAPi712A04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G49480_O_sativa_Nipponbare_DAPi712A04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G52880_O_sativa_Nipponbare_DAPi712E12-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G52880_O_sativa_Nipponbare_DAPi712E12-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G69180_O_sativa_Nipponbare_DAPi712G05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G69180_O_sativa_Nipponbare_DAPi712G05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G69690_O_sativa_Nipponbare_DAPi712C02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G69690_O_sativa_Nipponbare_DAPi712C02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G69780_O_sativa_Nipponbare_DAPi712A03-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G69780_O_sativa_Nipponbare_DAPi712A03-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G72740_O_sativa_Nipponbare_DAPi712G09-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G72740_O_sativa_Nipponbare_DAPi712G09-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G74480_O_sativa_Nipponbare_DAPi712D07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G74480_O_sativa_Nipponbare_DAPi712D07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G76420_O_sativa_Nipponbare_DAPi712C09-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G76420_O_sativa_Nipponbare_DAPi712C09-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G76880_O_sativa_Nipponbare_DAPi712F11-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G76880_O_sativa_Nipponbare_DAPi712F11-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G79580_O_sativa_Nipponbare_DAPi712B09-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G79580_O_sativa_Nipponbare_DAPi712B09-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT1G80840_O_sativa_Nipponbare_DAPi712G03-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT1G80840_O_sativa_Nipponbare_DAPi712G03-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G01060_O_sativa_Nipponbare_DAPi712F05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G01060_O_sativa_Nipponbare_DAPi712F05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G01930_O_sativa_Nipponbare_DAPi712D05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G01930_O_sativa_Nipponbare_DAPi712D05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G01940_O_sativa_Nipponbare_DAPi712G08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G01940_O_sativa_Nipponbare_DAPi712G08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G02820_O_sativa_Nipponbare_DAPi712F08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G02820_O_sativa_Nipponbare_DAPi712F08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G18550_O_sativa_Nipponbare_DAPi712E07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G18550_O_sativa_Nipponbare_DAPi712E07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G22430_O_sativa_Nipponbare_DAPi712H02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G22430_O_sativa_Nipponbare_DAPi712H02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G30250_O_sativa_Nipponbare_DAPi712H03-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G30250_O_sativa_Nipponbare_DAPi712H03-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G40620_O_sativa_Nipponbare_DAPi712B12-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G40620_O_sativa_Nipponbare_DAPi712B12-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G45420_O_sativa_Nipponbare_DAPi712F06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G45420_O_sativa_Nipponbare_DAPi712F06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G45480_O_sativa_Nipponbare_DAPi712F09-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G45480_O_sativa_Nipponbare_DAPi712F09-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G46270_O_sativa_Nipponbare_DAPi712H11-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G46270_O_sativa_Nipponbare_DAPi712H11-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT2G47070_O_sativa_Nipponbare_DAPi712H10-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT2G47070_O_sativa_Nipponbare_DAPi712H10-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G02940_O_sativa_Nipponbare_DAPi712H04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G02940_O_sativa_Nipponbare_DAPi712H04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G08500_O_sativa_Nipponbare_DAPi712B05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G08500_O_sativa_Nipponbare_DAPi712B05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G12250_O_sativa_Nipponbare_DAPi712A07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G12250_O_sativa_Nipponbare_DAPi712A07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G18990_O_sativa_Nipponbare_DAPi712D11-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G18990_O_sativa_Nipponbare_DAPi712D11-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G27010_O_sativa_Nipponbare_DAPi712C04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G27010_O_sativa_Nipponbare_DAPi712C04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G50060_O_sativa_Nipponbare_DAPi712G02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G50060_O_sativa_Nipponbare_DAPi712G02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G50260_O_sativa_Nipponbare_DAPi712D02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G50260_O_sativa_Nipponbare_DAPi712D02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G50410_O_sativa_Nipponbare_DAPi712H06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G50410_O_sativa_Nipponbare_DAPi712H06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G56400_O_sativa_Nipponbare_DAPi712B02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G56400_O_sativa_Nipponbare_DAPi712B02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G57920_O_sativa_Nipponbare_DAPi712D06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G57920_O_sativa_Nipponbare_DAPi712D06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT3G60530_O_sativa_Nipponbare_DAPi712E05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT3G60530_O_sativa_Nipponbare_DAPi712E05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G00730_O_sativa_Nipponbare_DAPi712C11-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G00730_O_sativa_Nipponbare_DAPi712C11-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G14770_O_sativa_Nipponbare_DAPi712F10-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G14770_O_sativa_Nipponbare_DAPi712F10-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G17980_O_sativa_Nipponbare_DAPi712E10-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G17980_O_sativa_Nipponbare_DAPi712E10-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G25470_O_sativa_Nipponbare_DAPi712B06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G25470_O_sativa_Nipponbare_DAPi712B06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G25480_O_sativa_Nipponbare_DAPi712F04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G25480_O_sativa_Nipponbare_DAPi712F04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G25490_O_sativa_Nipponbare_DAPi712A08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G25490_O_sativa_Nipponbare_DAPi712A08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT4G31800_O_sativa_Nipponbare_DAPi712F02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT4G31800_O_sativa_Nipponbare_DAPi712F02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G02320_O_sativa_Nipponbare_DAPi712G06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G02320_O_sativa_Nipponbare_DAPi712G06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G03150_O_sativa_Nipponbare_DAPi712D08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G03150_O_sativa_Nipponbare_DAPi712D08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G03790_O_sativa_Nipponbare_DAPi712C06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G03790_O_sativa_Nipponbare_DAPi712C06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G05550_O_sativa_Nipponbare_DAPi712A10-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G05550_O_sativa_Nipponbare_DAPi712A10-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G09410_O_sativa_Nipponbare_DAPi712G11-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G09410_O_sativa_Nipponbare_DAPi712G11-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G10030_O_sativa_Nipponbare_DAPi712A06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G10030_O_sativa_Nipponbare_DAPi712A06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G11260_O_sativa_Nipponbare_DAPi712D12-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G11260_O_sativa_Nipponbare_DAPi712D12-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G14960_O_sativa_Nipponbare_DAPi712E08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G14960_O_sativa_Nipponbare_DAPi712E08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G17300_O_sativa_Nipponbare_DAPi712H08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G17300_O_sativa_Nipponbare_DAPi712H08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G18560_O_sativa_Nipponbare_DAPi712H07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G18560_O_sativa_Nipponbare_DAPi712H07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G19790_O_sativa_Nipponbare_DAPi712G07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G19790_O_sativa_Nipponbare_DAPi712G07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G39760_O_sativa_Nipponbare_DAPi712A02-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G39760_O_sativa_Nipponbare_DAPi712A02-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G45300_O_sativa_Nipponbare_DAPi712G10-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G45300_O_sativa_Nipponbare_DAPi712G10-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G47390_O_sativa_Nipponbare_DAPi712F01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G47390_O_sativa_Nipponbare_DAPi712F01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G52830_O_sativa_Nipponbare_DAPi712F07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G52830_O_sativa_Nipponbare_DAPi712F07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G56110_O_sativa_Nipponbare_DAPi712E06-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G56110_O_sativa_Nipponbare_DAPi712E06-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G60130_O_sativa_Nipponbare_DAPi712C07-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G60130_O_sativa_Nipponbare_DAPi712C07-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G62020_O_sativa_Nipponbare_DAPi712E04-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G62020_O_sativa_Nipponbare_DAPi712E04-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G62470_O_sativa_Nipponbare_DAPi712C08-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G62470_O_sativa_Nipponbare_DAPi712C08-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G62940_O_sativa_Nipponbare_DAPi712A05-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G62940_O_sativa_Nipponbare_DAPi712A05-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G64750_O_sativa_Nipponbare_DAPi712E03-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G64750_O_sativa_Nipponbare_DAPi712E03-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G65410_O_sativa_Nipponbare_DAPi712D03-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G65410_O_sativa_Nipponbare_DAPi712D03-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AT5G67300_O_sativa_Nipponbare_DAPi712B01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes AT5G67300_O_sativa_Nipponbare_DAPi712B01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s0116.1_O_sativa_Nipponbare_DAPi709C10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s0116.1_O_sativa_Nipponbare_DAPi709C10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s0116.1_O_sativa_Nipponbare_DAPi711C10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s0116.1_O_sativa_Nipponbare_DAPi711C10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s0116.1_O_sativa_Nipponbare_DAPi712C10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s0116.1_O_sativa_Nipponbare_DAPi712C10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s1194.1_O_sativa_Nipponbare_DAPi709D03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s1194.1_O_sativa_Nipponbare_DAPi709D03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s1194.1_O_sativa_Nipponbare_DAPi711D03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s1194.1_O_sativa_Nipponbare_DAPi711D03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s1194.1_O_sativa_Nipponbare_DAPi712D03-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s1194.1_O_sativa_Nipponbare_DAPi712D03-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s1299.1_O_sativa_Nipponbare_DAPi710B10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s1299.1_O_sativa_Nipponbare_DAPi710B10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s1299.1_O_sativa_Nipponbare_DAPi712B10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s1299.1_O_sativa_Nipponbare_DAPi712B10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s3581.1.p_O_sativa_Nipponbare_DAPi709D01-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s3581.1.p_O_sativa_Nipponbare_DAPi709D01-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s3581.1.p_O_sativa_Nipponbare_DAPi711D01-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s3581.1.p_O_sativa_Nipponbare_DAPi711D01-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0001s3581.1.p_O_sativa_Nipponbare_DAPi712D01-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0001s3581.1.p_O_sativa_Nipponbare_DAPi712D01-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s1646.1_O_sativa_Nipponbare_DAPi709C12-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s1646.1_O_sativa_Nipponbare_DAPi709C12-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s1646.1_O_sativa_Nipponbare_DAPi711C12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s1646.1_O_sativa_Nipponbare_DAPi711C12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s1646.1_O_sativa_Nipponbare_DAPi712C12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s1646.1_O_sativa_Nipponbare_DAPi712C12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s1959.1_O_sativa_Nipponbare_DAPi709H10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s1959.1_O_sativa_Nipponbare_DAPi709H10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s1959.1_O_sativa_Nipponbare_DAPi711H10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s1959.1_O_sativa_Nipponbare_DAPi711H10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s1959.1_O_sativa_Nipponbare_DAPi712H10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s1959.1_O_sativa_Nipponbare_DAPi712H10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s2128.1_O_sativa_Nipponbare_DAPi710G10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s2128.1_O_sativa_Nipponbare_DAPi710G10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s2128.1_O_sativa_Nipponbare_DAPi712G10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s2128.1_O_sativa_Nipponbare_DAPi712G10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s2670.1_O_sativa_Nipponbare_DAPi709E11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s2670.1_O_sativa_Nipponbare_DAPi709E11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s2670.1_O_sativa_Nipponbare_DAPi711E11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s2670.1_O_sativa_Nipponbare_DAPi711E11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0002s2670.1_O_sativa_Nipponbare_DAPi712E11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0002s2670.1_O_sativa_Nipponbare_DAPi712E11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0003s1161.1.p_O_sativa_Nipponbare_DAPi709G07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0003s1161.1.p_O_sativa_Nipponbare_DAPi709G07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0003s1161.1.p_O_sativa_Nipponbare_DAPi711G07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0003s1161.1.p_O_sativa_Nipponbare_DAPi711G07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0003s1161.1.p_O_sativa_Nipponbare_DAPi712G07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0003s1161.1.p_O_sativa_Nipponbare_DAPi712G07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0003s3279.1_O_sativa_Nipponbare_DAPi710B01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0003s3279.1_O_sativa_Nipponbare_DAPi710B01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0003s3279.1_O_sativa_Nipponbare_DAPi712B01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0003s3279.1_O_sativa_Nipponbare_DAPi712B01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2291.1_O_sativa_Nipponbare_DAPi709A09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2291.1_O_sativa_Nipponbare_DAPi709A09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2291.1_O_sativa_Nipponbare_DAPi711A09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2291.1_O_sativa_Nipponbare_DAPi711A09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2291.1_O_sativa_Nipponbare_DAPi712A09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2291.1_O_sativa_Nipponbare_DAPi712A09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2803.1_O_sativa_Nipponbare_DAPi710D05-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2803.1_O_sativa_Nipponbare_DAPi710D05-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2803.1_O_sativa_Nipponbare_DAPi712D05-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2803.1_O_sativa_Nipponbare_DAPi712D05-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2898.1.p_O_sativa_Nipponbare_DAPi709B07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2898.1.p_O_sativa_Nipponbare_DAPi709B07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2898.1.p_O_sativa_Nipponbare_DAPi711B07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2898.1.p_O_sativa_Nipponbare_DAPi711B07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2898.1.p_O_sativa_Nipponbare_DAPi712B07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2898.1.p_O_sativa_Nipponbare_DAPi712B07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2981.1_O_sativa_Nipponbare_DAPi710A06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2981.1_O_sativa_Nipponbare_DAPi710A06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0004s2981.1_O_sativa_Nipponbare_DAPi712A06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0004s2981.1_O_sativa_Nipponbare_DAPi712A06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0005s0004.1_O_sativa_Nipponbare_DAPi710G01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0005s0004.1_O_sativa_Nipponbare_DAPi710G01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0005s0004.1_O_sativa_Nipponbare_DAPi712G01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0005s0004.1_O_sativa_Nipponbare_DAPi712G01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0005s0095.1_O_sativa_Nipponbare_DAPi710H08-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0005s0095.1_O_sativa_Nipponbare_DAPi710H08-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0005s0095.1_O_sativa_Nipponbare_DAPi712H08-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0005s0095.1_O_sativa_Nipponbare_DAPi712H08-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0005s0520.1_O_sativa_Nipponbare_DAPi710B04-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0005s0520.1_O_sativa_Nipponbare_DAPi710B04-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0005s0520.1_O_sativa_Nipponbare_DAPi712B04-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0005s0520.1_O_sativa_Nipponbare_DAPi712B04-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0006s0445.1_O_sativa_Nipponbare_DAPi710B07-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0006s0445.1_O_sativa_Nipponbare_DAPi710B07-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0006s0445.1_O_sativa_Nipponbare_DAPi712B07-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0006s0445.1_O_sativa_Nipponbare_DAPi712B07-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0007s0775.1_O_sativa_Nipponbare_DAPi709A04-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0007s0775.1_O_sativa_Nipponbare_DAPi709A04-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0007s0775.1_O_sativa_Nipponbare_DAPi711A04-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0007s0775.1_O_sativa_Nipponbare_DAPi711A04-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s0039.1_O_sativa_Nipponbare_DAPi709F09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s0039.1_O_sativa_Nipponbare_DAPi709F09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s0039.1_O_sativa_Nipponbare_DAPi711F09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s0039.1_O_sativa_Nipponbare_DAPi711F09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s0039.1_O_sativa_Nipponbare_DAPi712F09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s0039.1_O_sativa_Nipponbare_DAPi712F09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s0285.1_O_sativa_Nipponbare_DAPi709D08-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s0285.1_O_sativa_Nipponbare_DAPi709D08-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s0285.1_O_sativa_Nipponbare_DAPi711D08-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s0285.1_O_sativa_Nipponbare_DAPi711D08-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s0285.1_O_sativa_Nipponbare_DAPi712D08-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s0285.1_O_sativa_Nipponbare_DAPi712D08-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Carub.0008s2269.1_O_sativa_Nipponbare_DAPi709G02-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Carub.0008s2269.1_O_sativa_Nipponbare_DAPi709G02-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi709A01-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi709A01-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi709H01-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi709H01-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi709H12-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi709H12-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi710A01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi710A01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi710A12-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi710A12-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi710G12-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi710G12-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi710H01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi710H01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi710H12-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi710H12-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi711A01-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi711A01-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi711H01-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi711H01-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi711H12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi711H12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712A01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712A01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712A01-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712A01-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712A01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712A01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712A12-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712A12-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712A12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712A12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712A12-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712A12-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712G12-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712G12-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712H01-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712H01-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712H01-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712H01-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712H01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712H01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712H12-ORGi5010-96P220.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712H12-ORGi5010-96P220.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712H12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712H12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Control_TF_DNA_O_sativa_Nipponbare_DAPi712H12-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Control_TF_DNA_O_sativa_Nipponbare_DAPi712H12-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g17260.2_O_sativa_Nipponbare_DAPi709H07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g17260.2_O_sativa_Nipponbare_DAPi709H07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g17260.2_O_sativa_Nipponbare_DAPi711H07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g17260.2_O_sativa_Nipponbare_DAPi711H07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g17260.2_O_sativa_Nipponbare_DAPi712H07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g17260.2_O_sativa_Nipponbare_DAPi712H07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g18240.1_O_sativa_Nipponbare_DAPi712G04-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g18240.1_O_sativa_Nipponbare_DAPi712G04-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g46970.1_O_sativa_Nipponbare_DAPi709C07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g46970.1_O_sativa_Nipponbare_DAPi709C07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g46970.1_O_sativa_Nipponbare_DAPi711C07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g46970.1_O_sativa_Nipponbare_DAPi711C07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g46970.1_O_sativa_Nipponbare_DAPi712C07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g46970.1_O_sativa_Nipponbare_DAPi712C07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g49830.1_O_sativa_Nipponbare_DAPi710C10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g49830.1_O_sativa_Nipponbare_DAPi710C10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g49830.1_O_sativa_Nipponbare_DAPi712C10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g49830.1_O_sativa_Nipponbare_DAPi712C10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g51154.1_O_sativa_Nipponbare_DAPi709A11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g51154.1_O_sativa_Nipponbare_DAPi709A11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g51154.1_O_sativa_Nipponbare_DAPi711A11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g51154.1_O_sativa_Nipponbare_DAPi711A11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g51154.1_O_sativa_Nipponbare_DAPi712A11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g51154.1_O_sativa_Nipponbare_DAPi712A11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g69980.1_O_sativa_Nipponbare_DAPi710C04-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g69980.1_O_sativa_Nipponbare_DAPi710C04-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os01g69980.1_O_sativa_Nipponbare_DAPi712C04-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os01g69980.1_O_sativa_Nipponbare_DAPi712C04-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os02g33430.1_O_sativa_Nipponbare_DAPi709D05-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os02g33430.1_O_sativa_Nipponbare_DAPi709D05-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os02g33430.1_O_sativa_Nipponbare_DAPi711D05-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os02g33430.1_O_sativa_Nipponbare_DAPi711D05-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os02g33430.1_O_sativa_Nipponbare_DAPi712D05-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os02g33430.1_O_sativa_Nipponbare_DAPi712D05-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os02g42970.1_O_sativa_Nipponbare_DAPi709E03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os02g42970.1_O_sativa_Nipponbare_DAPi709E03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os02g42970.1_O_sativa_Nipponbare_DAPi711E03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os02g42970.1_O_sativa_Nipponbare_DAPi711E03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os02g42970.1_O_sativa_Nipponbare_DAPi712E03-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os02g42970.1_O_sativa_Nipponbare_DAPi712E03-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g10210.1_O_sativa_Nipponbare_DAPi710C01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g10210.1_O_sativa_Nipponbare_DAPi710C01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g10210.1_O_sativa_Nipponbare_DAPi712C01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g10210.1_O_sativa_Nipponbare_DAPi712C01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g21800.1_O_sativa_Nipponbare_DAPi709B09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g21800.1_O_sativa_Nipponbare_DAPi709B09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g21800.1_O_sativa_Nipponbare_DAPi711B09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g21800.1_O_sativa_Nipponbare_DAPi711B09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g21800.1_O_sativa_Nipponbare_DAPi712B09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g21800.1_O_sativa_Nipponbare_DAPi712B09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g61760.1_O_sativa_Nipponbare_DAPi710B06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g61760.1_O_sativa_Nipponbare_DAPi710B06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os03g61760.1_O_sativa_Nipponbare_DAPi712B06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os03g61760.1_O_sativa_Nipponbare_DAPi712B06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os06g07030.1_O_sativa_Nipponbare_DAPi709E01-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os06g07030.1_O_sativa_Nipponbare_DAPi709E01-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os06g07030.1_O_sativa_Nipponbare_DAPi711E01-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os06g07030.1_O_sativa_Nipponbare_DAPi711E01-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os06g07030.1_O_sativa_Nipponbare_DAPi712E01-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os06g07030.1_O_sativa_Nipponbare_DAPi712E01-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g06110.3_O_sativa_Nipponbare_DAPi709D10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g06110.3_O_sativa_Nipponbare_DAPi709D10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g06110.3_O_sativa_Nipponbare_DAPi711D10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g06110.3_O_sativa_Nipponbare_DAPi711D10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g06110.3_O_sativa_Nipponbare_DAPi712D10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g06110.3_O_sativa_Nipponbare_DAPi712D10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g37970.1_O_sativa_Nipponbare_DAPi711A06-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g37970.1_O_sativa_Nipponbare_DAPi711A06-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g37970.1_O_sativa_Nipponbare_DAPi712A06-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g37970.1_O_sativa_Nipponbare_DAPi712A06-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g44050.1_O_sativa_Nipponbare_DAPi710F02-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g44050.1_O_sativa_Nipponbare_DAPi710F02-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os08g44050.1_O_sativa_Nipponbare_DAPi712F02-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os08g44050.1_O_sativa_Nipponbare_DAPi712F02-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os09g12770.1_O_sativa_Nipponbare_DAPi710A02-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os09g12770.1_O_sativa_Nipponbare_DAPi710A02-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os09g12770.1_O_sativa_Nipponbare_DAPi712A02-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os09g12770.1_O_sativa_Nipponbare_DAPi712A02-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os09g25060.1_O_sativa_Nipponbare_DAPi709F11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os09g25060.1_O_sativa_Nipponbare_DAPi709F11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os09g25060.1_O_sativa_Nipponbare_DAPi711F11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os09g25060.1_O_sativa_Nipponbare_DAPi711F11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os09g25060.1_O_sativa_Nipponbare_DAPi712F11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os09g25060.1_O_sativa_Nipponbare_DAPi712F11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g02584.3_O_sativa_Nipponbare_DAPi710A09-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g02584.3_O_sativa_Nipponbare_DAPi710A09-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g02584.3_O_sativa_Nipponbare_DAPi712A09-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g02584.3_O_sativa_Nipponbare_DAPi712A09-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g07510.1_O_sativa_Nipponbare_DAPi710E05-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g07510.1_O_sativa_Nipponbare_DAPi710E05-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g07510.1_O_sativa_Nipponbare_DAPi712E05-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g07510.1_O_sativa_Nipponbare_DAPi712E05-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g26500.1_O_sativa_Nipponbare_DAPi709D12-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g26500.1_O_sativa_Nipponbare_DAPi709D12-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g26500.1_O_sativa_Nipponbare_DAPi711D12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g26500.1_O_sativa_Nipponbare_DAPi711D12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g26500.1_O_sativa_Nipponbare_DAPi712D12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g26500.1_O_sativa_Nipponbare_DAPi712D12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g28340.1_O_sativa_Nipponbare_DAPi710H04-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g28340.1_O_sativa_Nipponbare_DAPi710H04-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g28340.1_O_sativa_Nipponbare_DAPi712H04-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g28340.1_O_sativa_Nipponbare_DAPi712H04-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g40810.1_O_sativa_Nipponbare_DAPi710F06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g40810.1_O_sativa_Nipponbare_DAPi710F06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g40810.1_O_sativa_Nipponbare_DAPi712F06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g40810.1_O_sativa_Nipponbare_DAPi712F06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g41200.1_O_sativa_Nipponbare_DAPi709G09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g41200.1_O_sativa_Nipponbare_DAPi709G09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g41200.1_O_sativa_Nipponbare_DAPi711G09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g41200.1_O_sativa_Nipponbare_DAPi711G09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOC_Os10g41200.1_O_sativa_Nipponbare_DAPi712G09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes LOC_Os10g41200.1_O_sativa_Nipponbare_DAPi712G09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc01g091420.2.1_O_sativa_Nipponbare_DAPi710F05-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc01g091420.2.1_O_sativa_Nipponbare_DAPi710F05-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc01g091420.2.1_O_sativa_Nipponbare_DAPi712F05-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc01g091420.2.1_O_sativa_Nipponbare_DAPi712F05-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc01g095460.3.1_O_sativa_Nipponbare_DAPi709D07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc01g095460.3.1_O_sativa_Nipponbare_DAPi709D07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc01g095460.3.1_O_sativa_Nipponbare_DAPi711D07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc01g095460.3.1_O_sativa_Nipponbare_DAPi711D07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc01g095460.3.1_O_sativa_Nipponbare_DAPi712D07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc01g095460.3.1_O_sativa_Nipponbare_DAPi712D07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc01g102340.3.1_O_sativa_Nipponbare_DAPi712H04-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc01g102340.3.1_O_sativa_Nipponbare_DAPi712H04-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc02g085630.3.1_O_sativa_Nipponbare_DAPi710D01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc02g085630.3.1_O_sativa_Nipponbare_DAPi710D01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc02g085630.3.1_O_sativa_Nipponbare_DAPi712D01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc02g085630.3.1_O_sativa_Nipponbare_DAPi712D01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc02g094290.1.1_O_sativa_Nipponbare_DAPi710D04-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc02g094290.1.1_O_sativa_Nipponbare_DAPi710D04-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc02g094290.1.1_O_sativa_Nipponbare_DAPi712D04-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc02g094290.1.1_O_sativa_Nipponbare_DAPi712D04-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc03g116010.3.1_O_sativa_Nipponbare_DAPi710A11-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc03g116010.3.1_O_sativa_Nipponbare_DAPi710A11-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc03g116010.3.1_O_sativa_Nipponbare_DAPi712A11-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc03g116010.3.1_O_sativa_Nipponbare_DAPi712A11-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc03g116890.3.1_O_sativa_Nipponbare_DAPi709G11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc03g116890.3.1_O_sativa_Nipponbare_DAPi709G11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc03g116890.3.1_O_sativa_Nipponbare_DAPi711G11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc03g116890.3.1_O_sativa_Nipponbare_DAPi711G11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc03g116890.3.1_O_sativa_Nipponbare_DAPi712G11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc03g116890.3.1_O_sativa_Nipponbare_DAPi712G11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc04g078640.3.1_O_sativa_Nipponbare_DAPi709F01-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc04g078640.3.1_O_sativa_Nipponbare_DAPi709F01-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc04g078640.3.1_O_sativa_Nipponbare_DAPi711F01-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc04g078640.3.1_O_sativa_Nipponbare_DAPi711F01-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc04g078640.3.1_O_sativa_Nipponbare_DAPi712F01-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc04g078640.3.1_O_sativa_Nipponbare_DAPi712F01-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g007180.3.1_O_sativa_Nipponbare_DAPi709E12-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g007180.3.1_O_sativa_Nipponbare_DAPi709E12-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g007180.3.1_O_sativa_Nipponbare_DAPi711E12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g007180.3.1_O_sativa_Nipponbare_DAPi711E12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g007180.3.1_O_sativa_Nipponbare_DAPi712E12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g007180.3.1_O_sativa_Nipponbare_DAPi712E12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g009790.1.1_O_sativa_Nipponbare_DAPi710D10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g009790.1.1_O_sativa_Nipponbare_DAPi710D10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g009790.1.1_O_sativa_Nipponbare_DAPi712D10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g009790.1.1_O_sativa_Nipponbare_DAPi712D10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g053240.4.1_O_sativa_Nipponbare_DAPi710C06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g053240.4.1_O_sativa_Nipponbare_DAPi710C06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc05g053240.4.1_O_sativa_Nipponbare_DAPi712C06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc05g053240.4.1_O_sativa_Nipponbare_DAPi712C06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc06g048630.3.1_O_sativa_Nipponbare_DAPi712C09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc06g048630.3.1_O_sativa_Nipponbare_DAPi712C09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc06g051120.4.1_O_sativa_Nipponbare_DAPi710D07-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc06g051120.4.1_O_sativa_Nipponbare_DAPi710D07-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc06g051120.4.1_O_sativa_Nipponbare_DAPi712D07-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc06g051120.4.1_O_sativa_Nipponbare_DAPi712D07-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc07g040920.2.1_O_sativa_Nipponbare_DAPi709B11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc07g040920.2.1_O_sativa_Nipponbare_DAPi709B11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc07g040920.2.1_O_sativa_Nipponbare_DAPi711B11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc07g040920.2.1_O_sativa_Nipponbare_DAPi711B11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc07g040920.2.1_O_sativa_Nipponbare_DAPi712B11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc07g040920.2.1_O_sativa_Nipponbare_DAPi712B11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g068320.3.1_O_sativa_Nipponbare_DAPi709C04-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g068320.3.1_O_sativa_Nipponbare_DAPi709C04-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g068320.3.1_O_sativa_Nipponbare_DAPi711C04-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g068320.3.1_O_sativa_Nipponbare_DAPi711C04-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g068320.3.1_O_sativa_Nipponbare_DAPi712C04-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g068320.3.1_O_sativa_Nipponbare_DAPi712C04-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g078340.3.1_O_sativa_Nipponbare_DAPi709H09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g078340.3.1_O_sativa_Nipponbare_DAPi709H09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g078340.3.1_O_sativa_Nipponbare_DAPi711H09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g078340.3.1_O_sativa_Nipponbare_DAPi711H09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g078340.3.1_O_sativa_Nipponbare_DAPi712H09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g078340.3.1_O_sativa_Nipponbare_DAPi712H09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g079120.3.1_O_sativa_Nipponbare_DAPi709F03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g079120.3.1_O_sativa_Nipponbare_DAPi709F03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g079120.3.1_O_sativa_Nipponbare_DAPi711F03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g079120.3.1_O_sativa_Nipponbare_DAPi711F03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc08g079120.3.1_O_sativa_Nipponbare_DAPi712F03-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc08g079120.3.1_O_sativa_Nipponbare_DAPi712F03-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc10g005080.3.1_O_sativa_Nipponbare_DAPi709E10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc10g005080.3.1_O_sativa_Nipponbare_DAPi709E10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc10g005080.3.1_O_sativa_Nipponbare_DAPi711E10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc10g005080.3.1_O_sativa_Nipponbare_DAPi711E10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc10g005080.3.1_O_sativa_Nipponbare_DAPi712E10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc10g005080.3.1_O_sativa_Nipponbare_DAPi712E10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc10g018560.2.1_O_sativa_Nipponbare_DAPi710G06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc10g018560.2.1_O_sativa_Nipponbare_DAPi710G06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc10g018560.2.1_O_sativa_Nipponbare_DAPi712G06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc10g018560.2.1_O_sativa_Nipponbare_DAPi712G06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc11g022470.2.1_O_sativa_Nipponbare_DAPi710B02-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc11g022470.2.1_O_sativa_Nipponbare_DAPi710B02-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc11g022470.2.1_O_sativa_Nipponbare_DAPi712B02-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc11g022470.2.1_O_sativa_Nipponbare_DAPi712B02-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc11g064950.3.1_O_sativa_Nipponbare_DAPi709A08-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc11g064950.3.1_O_sativa_Nipponbare_DAPi709A08-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc11g064950.3.1_O_sativa_Nipponbare_DAPi711A08-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc11g064950.3.1_O_sativa_Nipponbare_DAPi711A08-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Solyc11g064950.3.1_O_sativa_Nipponbare_DAPi712A08-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes Solyc11g064950.3.1_O_sativa_Nipponbare_DAPi712A08-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013586407.1_O_sativa_Nipponbare_DAPi709F07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013586407.1_O_sativa_Nipponbare_DAPi709F07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013586407.1_O_sativa_Nipponbare_DAPi711F07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013586407.1_O_sativa_Nipponbare_DAPi711F07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013586407.1_O_sativa_Nipponbare_DAPi712F07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013586407.1_O_sativa_Nipponbare_DAPi712F07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013587350.1_O_sativa_Nipponbare_DAPi709B10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013587350.1_O_sativa_Nipponbare_DAPi709B10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013587350.1_O_sativa_Nipponbare_DAPi711B10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013587350.1_O_sativa_Nipponbare_DAPi711B10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013587350.1_O_sativa_Nipponbare_DAPi712B10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013587350.1_O_sativa_Nipponbare_DAPi712B10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013587997.1_O_sativa_Nipponbare_DAPi709D11-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013587997.1_O_sativa_Nipponbare_DAPi709D11-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013587997.1_O_sativa_Nipponbare_DAPi711D11-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013587997.1_O_sativa_Nipponbare_DAPi711D11-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013587997.1_O_sativa_Nipponbare_DAPi712D11-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013587997.1_O_sativa_Nipponbare_DAPi712D11-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013589913.1_O_sativa_Nipponbare_DAPi709G10-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013589913.1_O_sativa_Nipponbare_DAPi709G10-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013589913.1_O_sativa_Nipponbare_DAPi711G10-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013589913.1_O_sativa_Nipponbare_DAPi711G10-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013589913.1_O_sativa_Nipponbare_DAPi712G10-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013589913.1_O_sativa_Nipponbare_DAPi712G10-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013589953.1_O_sativa_Nipponbare_DAPi711B12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013589953.1_O_sativa_Nipponbare_DAPi711B12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013589953.1_O_sativa_Nipponbare_DAPi712B12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013589953.1_O_sativa_Nipponbare_DAPi712B12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013591813.1_O_sativa_Nipponbare_DAPi710F10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013591813.1_O_sativa_Nipponbare_DAPi710F10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013591813.1_O_sativa_Nipponbare_DAPi712F10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013591813.1_O_sativa_Nipponbare_DAPi712F10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013593496.1_O_sativa_Nipponbare_DAPi710A04-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013593496.1_O_sativa_Nipponbare_DAPi710A04-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013593496.1_O_sativa_Nipponbare_DAPi712A04-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013593496.1_O_sativa_Nipponbare_DAPi712A04-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013599228.1_O_sativa_Nipponbare_DAPi710D02-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013599228.1_O_sativa_Nipponbare_DAPi710D02-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013599228.1_O_sativa_Nipponbare_DAPi712D02-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013599228.1_O_sativa_Nipponbare_DAPi712D02-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013599843.1_O_sativa_Nipponbare_DAPi710G08-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013599843.1_O_sativa_Nipponbare_DAPi710G08-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013599843.1_O_sativa_Nipponbare_DAPi712G08-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013599843.1_O_sativa_Nipponbare_DAPi712G08-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013602065.1_O_sativa_Nipponbare_DAPi710E06-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013602065.1_O_sativa_Nipponbare_DAPi710E06-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013602065.1_O_sativa_Nipponbare_DAPi712E06-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013602065.1_O_sativa_Nipponbare_DAPi712E06-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013602769.1_O_sativa_Nipponbare_DAPi709C03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013602769.1_O_sativa_Nipponbare_DAPi709C03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013602769.1_O_sativa_Nipponbare_DAPi711C03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013602769.1_O_sativa_Nipponbare_DAPi711C03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013602769.1_O_sativa_Nipponbare_DAPi712C03-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013602769.1_O_sativa_Nipponbare_DAPi712C03-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013609718.1_O_sativa_Nipponbare_DAPi709G12-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013609718.1_O_sativa_Nipponbare_DAPi709G12-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013609718.1_O_sativa_Nipponbare_DAPi711G12-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013609718.1_O_sativa_Nipponbare_DAPi711G12-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013609718.1_O_sativa_Nipponbare_DAPi712G12-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013609718.1_O_sativa_Nipponbare_DAPi712G12-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013613838.1_O_sativa_Nipponbare_DAPi709C08-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013613838.1_O_sativa_Nipponbare_DAPi709C08-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013613838.1_O_sativa_Nipponbare_DAPi711C08-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013613838.1_O_sativa_Nipponbare_DAPi711C08-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013613838.1_O_sativa_Nipponbare_DAPi712C08-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013613838.1_O_sativa_Nipponbare_DAPi712C08-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013615900.1_O_sativa_Nipponbare_DAPi709E09-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013615900.1_O_sativa_Nipponbare_DAPi709E09-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013615900.1_O_sativa_Nipponbare_DAPi711E09-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013615900.1_O_sativa_Nipponbare_DAPi711E09-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013615900.1_O_sativa_Nipponbare_DAPi712E09-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013615900.1_O_sativa_Nipponbare_DAPi712E09-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013620714.1_O_sativa_Nipponbare_DAPi710F01-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013620714.1_O_sativa_Nipponbare_DAPi710F01-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013620714.1_O_sativa_Nipponbare_DAPi712F01-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013620714.1_O_sativa_Nipponbare_DAPi712F01-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013629448.1_O_sativa_Nipponbare_DAPi709H03-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013629448.1_O_sativa_Nipponbare_DAPi709H03-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013629448.1_O_sativa_Nipponbare_DAPi711H03-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013629448.1_O_sativa_Nipponbare_DAPi711H03-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013629448.1_O_sativa_Nipponbare_DAPi712H03-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013629448.1_O_sativa_Nipponbare_DAPi712H03-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013631386.1_O_sativa_Nipponbare_DAPi709A07-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013631386.1_O_sativa_Nipponbare_DAPi709A07-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013631386.1_O_sativa_Nipponbare_DAPi711A07-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013631386.1_O_sativa_Nipponbare_DAPi711A07-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013631386.1_O_sativa_Nipponbare_DAPi712A07-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013631386.1_O_sativa_Nipponbare_DAPi712A07-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013631649.1_O_sativa_Nipponbare_DAPi712B05-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013631649.1_O_sativa_Nipponbare_DAPi712B05-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013634112.1_O_sativa_Nipponbare_DAPi709H08-ORGi5010-96P354.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013634112.1_O_sativa_Nipponbare_DAPi709H08-ORGi5010-96P354.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013634112.1_O_sativa_Nipponbare_DAPi711H08-ORGi5010-96P361.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013634112.1_O_sativa_Nipponbare_DAPi711H08-ORGi5010-96P361.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013634112.1_O_sativa_Nipponbare_DAPi712H08-ORGi5010-96P247.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013634112.1_O_sativa_Nipponbare_DAPi712H08-ORGi5010-96P247.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013635977.1_O_sativa_Nipponbare_DAPi710H05-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013635977.1_O_sativa_Nipponbare_DAPi710H05-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013635977.1_O_sativa_Nipponbare_DAPi712H05-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013635977.1_O_sativa_Nipponbare_DAPi712H05-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013637759.1_O_sativa_Nipponbare_DAPi710A10-ORGi5010-96P358.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013637759.1_O_sativa_Nipponbare_DAPi710A10-ORGi5010-96P358.SE.a.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- XP_013637759.1_O_sativa_Nipponbare_DAPi712A10-ORGi5010-96P364.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Oryza_sativa/Oryza_sativa.MSU6.chrom.sizes XP_013637759.1_O_sativa_Nipponbare_DAPi712A10-ORGi5010-96P364.SE.a.wig -notitle -RPM -uniqueBAM