python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL1G11460.t1_A_lyrata_MN47_DAPi712A10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL1G11460.t1_A_lyrata_MN47_DAPi712A10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL1G23550.t1_A_lyrata_MN47_DAPi712B03-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL1G23550.t1_A_lyrata_MN47_DAPi712B03-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL1G53260.t1_A_lyrata_MN47_DAPi712B01-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL1G53260.t1_A_lyrata_MN47_DAPi712B01-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL2G28980.t1_A_lyrata_MN47_DAPi712H11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL2G28980.t1_A_lyrata_MN47_DAPi712H11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL2G32420.t2_A_lyrata_MN47_DAPi712F10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL2G32420.t2_A_lyrata_MN47_DAPi712F10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL2G40550.t1_A_lyrata_MN47_DAPi712C11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL2G40550.t1_A_lyrata_MN47_DAPi712C11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL3G23910.t2_A_lyrata_MN47_DAPi712E07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL3G23910.t2_A_lyrata_MN47_DAPi712E07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL4G38490.t1_A_lyrata_MN47_DAPi712G08-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL4G38490.t1_A_lyrata_MN47_DAPi712G08-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL4G45550.t1_A_lyrata_MN47_DAPi712H06-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL4G45550.t1_A_lyrata_MN47_DAPi712H06-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL8G10650.t1_A_lyrata_MN47_DAPi712D09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL8G10650.t1_A_lyrata_MN47_DAPi712D09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AL8G13510.t2_A_lyrata_MN47_DAPi712B08-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AL8G13510.t2_A_lyrata_MN47_DAPi712B08-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G01060_A_lyrata_MN47_DAPi709D10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G01060_A_lyrata_MN47_DAPi709D10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G01060_A_lyrata_MN47_DAPi712H05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G01060_A_lyrata_MN47_DAPi712H05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G01250_A_lyrata_MN47_DAPi710B07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G01250_A_lyrata_MN47_DAPi710B07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G01720_A_lyrata_MN47_DAPi709F09-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G01720_A_lyrata_MN47_DAPi709F09-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G02230_A_lyrata_MN47_DAPi712B03-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G02230_A_lyrata_MN47_DAPi712B03-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G02250_A_lyrata_MN47_DAPi710D09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G02250_A_lyrata_MN47_DAPi710D09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G03800_A_lyrata_MN47_DAPi709C01-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G03800_A_lyrata_MN47_DAPi709C01-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G06280_A_lyrata_MN47_DAPi710H02-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G06280_A_lyrata_MN47_DAPi710H02-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G06850_A_lyrata_MN47_DAPi712C12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G06850_A_lyrata_MN47_DAPi712C12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G08320_A_lyrata_MN47_DAPi710D12-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G08320_A_lyrata_MN47_DAPi710D12-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G09540_A_lyrata_MN47_DAPi710F07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G09540_A_lyrata_MN47_DAPi710F07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G12260_A_lyrata_MN47_DAPi712A11-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G12260_A_lyrata_MN47_DAPi712A11-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G12260_A_lyrata_MN47_DAPi712C12-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G12260_A_lyrata_MN47_DAPi712C12-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G12610_A_lyrata_MN47_DAPi710A11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G12610_A_lyrata_MN47_DAPi710A11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G12630_A_lyrata_MN47_DAPi710B04-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G12630_A_lyrata_MN47_DAPi710B04-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G13260_A_lyrata_MN47_DAPi712E01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G13260_A_lyrata_MN47_DAPi712E01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G13600_A_lyrata_MN47_DAPi712F12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G13600_A_lyrata_MN47_DAPi712F12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G14687_A_lyrata_MN47_DAPi711F04-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G14687_A_lyrata_MN47_DAPi711F04-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G16490_A_lyrata_MN47_DAPi712B02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G16490_A_lyrata_MN47_DAPi712B02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G18330_A_lyrata_MN47_DAPi711F03-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G18330_A_lyrata_MN47_DAPi711F03-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G18330_A_lyrata_MN47_DAPi712G01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G18330_A_lyrata_MN47_DAPi712G01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G19000_A_lyrata_MN47_DAPi711D11-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G19000_A_lyrata_MN47_DAPi711D11-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G19210_A_lyrata_MN47_DAPi709H02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G19210_A_lyrata_MN47_DAPi709H02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G20910_A_lyrata_MN47_DAPi712B10-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G20910_A_lyrata_MN47_DAPi712B10-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G20910_A_lyrata_MN47_DAPi712F01-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G20910_A_lyrata_MN47_DAPi712F01-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G20980_A_lyrata_MN47_DAPi712D06-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G20980_A_lyrata_MN47_DAPi712D06-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G20980_A_lyrata_MN47_DAPi712E11-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G20980_A_lyrata_MN47_DAPi712E11-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G22070_A_lyrata_MN47_DAPi712B11-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G22070_A_lyrata_MN47_DAPi712B11-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G22810_A_lyrata_MN47_DAPi709B04-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G22810_A_lyrata_MN47_DAPi709B04-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G25340_A_lyrata_MN47_DAPi710B01-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G25340_A_lyrata_MN47_DAPi710B01-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G25550_A_lyrata_MN47_DAPi711C01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G25550_A_lyrata_MN47_DAPi711C01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G27730_A_lyrata_MN47_DAPi711F01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G27730_A_lyrata_MN47_DAPi711F01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G27730_A_lyrata_MN47_DAPi712C01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G27730_A_lyrata_MN47_DAPi712C01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G28160_A_lyrata_MN47_DAPi710E04-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G28160_A_lyrata_MN47_DAPi710E04-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G28370_A_lyrata_MN47_DAPi709A07-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G28370_A_lyrata_MN47_DAPi709A07-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G28470_A_lyrata_MN47_DAPi710E12-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G28470_A_lyrata_MN47_DAPi710E12-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G29160_A_lyrata_MN47_DAPi709G01-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G29160_A_lyrata_MN47_DAPi709G01-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G29160_A_lyrata_MN47_DAPi712B04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G29160_A_lyrata_MN47_DAPi712B04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G29280_A_lyrata_MN47_DAPi711F12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G29280_A_lyrata_MN47_DAPi711F12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G30210_A_lyrata_MN47_DAPi711E03-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G30210_A_lyrata_MN47_DAPi711E03-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G32150_A_lyrata_MN47_DAPi712G03-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G32150_A_lyrata_MN47_DAPi712G03-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G33240_A_lyrata_MN47_DAPi711C10-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G33240_A_lyrata_MN47_DAPi711C10-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G33240_A_lyrata_MN47_DAPi712F03-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G33240_A_lyrata_MN47_DAPi712F03-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G34670_A_lyrata_MN47_DAPi710G09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G34670_A_lyrata_MN47_DAPi710G09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G36060_A_lyrata_MN47_DAPi709D02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G36060_A_lyrata_MN47_DAPi709D02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G43700_A_lyrata_MN47_DAPi712C11-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G43700_A_lyrata_MN47_DAPi712C11-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G46768_A_lyrata_MN47_DAPi709H03-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G46768_A_lyrata_MN47_DAPi709H03-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G46768_A_lyrata_MN47_DAPi712G04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G46768_A_lyrata_MN47_DAPi712G04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G47655_A_lyrata_MN47_DAPi710D05-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G47655_A_lyrata_MN47_DAPi710D05-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G49010_A_lyrata_MN47_DAPi709F03-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G49010_A_lyrata_MN47_DAPi709F03-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G49480_A_lyrata_MN47_DAPi711D12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G49480_A_lyrata_MN47_DAPi711D12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G49480_A_lyrata_MN47_DAPi712A04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G49480_A_lyrata_MN47_DAPi712A04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G50640_A_lyrata_MN47_DAPi709G04-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G50640_A_lyrata_MN47_DAPi709G04-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G51220_A_lyrata_MN47_DAPi709G12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G51220_A_lyrata_MN47_DAPi709G12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G52880_A_lyrata_MN47_DAPi712B12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G52880_A_lyrata_MN47_DAPi712B12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G52880_A_lyrata_MN47_DAPi712E12-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G52880_A_lyrata_MN47_DAPi712E12-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G53170_A_lyrata_MN47_DAPi711H11-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G53170_A_lyrata_MN47_DAPi711H11-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G53230_A_lyrata_MN47_DAPi709C08-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G53230_A_lyrata_MN47_DAPi709C08-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G63030_A_lyrata_MN47_DAPi710C07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G63030_A_lyrata_MN47_DAPi710C07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G64620_A_lyrata_MN47_DAPi711C04-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G64620_A_lyrata_MN47_DAPi711C04-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G68320_A_lyrata_MN47_DAPi709H11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G68320_A_lyrata_MN47_DAPi709H11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69180_A_lyrata_MN47_DAPi709G09-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69180_A_lyrata_MN47_DAPi709G09-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69180_A_lyrata_MN47_DAPi712G05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69180_A_lyrata_MN47_DAPi712G05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69490_A_lyrata_MN47_DAPi712A09-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69490_A_lyrata_MN47_DAPi712A09-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69570_A_lyrata_MN47_DAPi710F11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69570_A_lyrata_MN47_DAPi710F11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69690_A_lyrata_MN47_DAPi711G05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69690_A_lyrata_MN47_DAPi711G05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69690_A_lyrata_MN47_DAPi712C02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69690_A_lyrata_MN47_DAPi712C02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69780_A_lyrata_MN47_DAPi711G07-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69780_A_lyrata_MN47_DAPi711G07-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G69780_A_lyrata_MN47_DAPi712A03-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G69780_A_lyrata_MN47_DAPi712A03-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G71450_A_lyrata_MN47_DAPi709G11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G71450_A_lyrata_MN47_DAPi709G11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G72010_A_lyrata_MN47_DAPi711H03-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G72010_A_lyrata_MN47_DAPi711H03-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G72740_A_lyrata_MN47_DAPi710H11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G72740_A_lyrata_MN47_DAPi710H11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G72740_A_lyrata_MN47_DAPi712G09-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G72740_A_lyrata_MN47_DAPi712G09-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G74480_A_lyrata_MN47_DAPi710H04-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G74480_A_lyrata_MN47_DAPi710H04-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G74480_A_lyrata_MN47_DAPi712D07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G74480_A_lyrata_MN47_DAPi712D07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G74650_A_lyrata_MN47_DAPi710H08-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G74650_A_lyrata_MN47_DAPi710H08-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G75240_A_lyrata_MN47_DAPi710C12-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G75240_A_lyrata_MN47_DAPi710C12-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G75390_A_lyrata_MN47_DAPi712E08-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G75390_A_lyrata_MN47_DAPi712E08-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G76420_A_lyrata_MN47_DAPi710C10-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G76420_A_lyrata_MN47_DAPi710C10-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G76420_A_lyrata_MN47_DAPi712C09-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G76420_A_lyrata_MN47_DAPi712C09-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G76880_A_lyrata_MN47_DAPi712E06-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G76880_A_lyrata_MN47_DAPi712E06-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G76880_A_lyrata_MN47_DAPi712F11-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G76880_A_lyrata_MN47_DAPi712F11-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G77200_A_lyrata_MN47_DAPi710C05-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G77200_A_lyrata_MN47_DAPi710C05-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G79180_A_lyrata_MN47_DAPi709H09-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G79180_A_lyrata_MN47_DAPi709H09-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G79580_A_lyrata_MN47_DAPi710H09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G79580_A_lyrata_MN47_DAPi710H09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G79580_A_lyrata_MN47_DAPi712B09-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G79580_A_lyrata_MN47_DAPi712B09-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G80840_A_lyrata_MN47_DAPi711A11-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G80840_A_lyrata_MN47_DAPi711A11-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT1G80840_A_lyrata_MN47_DAPi712G03-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT1G80840_A_lyrata_MN47_DAPi712G03-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G01060_A_lyrata_MN47_DAPi712F05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G01060_A_lyrata_MN47_DAPi712F05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G01930_A_lyrata_MN47_DAPi709D06-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G01930_A_lyrata_MN47_DAPi709D06-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G01930_A_lyrata_MN47_DAPi712D05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G01930_A_lyrata_MN47_DAPi712D05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G01940_A_lyrata_MN47_DAPi710C09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G01940_A_lyrata_MN47_DAPi710C09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G01940_A_lyrata_MN47_DAPi712G08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G01940_A_lyrata_MN47_DAPi712G08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G02820_A_lyrata_MN47_DAPi710B09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G02820_A_lyrata_MN47_DAPi710B09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G02820_A_lyrata_MN47_DAPi712F08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G02820_A_lyrata_MN47_DAPi712F08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G03500_A_lyrata_MN47_DAPi711H07-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G03500_A_lyrata_MN47_DAPi711H07-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G15740_A_lyrata_MN47_DAPi710F08-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G15740_A_lyrata_MN47_DAPi710F08-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G18380_A_lyrata_MN47_DAPi710H06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G18380_A_lyrata_MN47_DAPi710H06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G18550_A_lyrata_MN47_DAPi710E06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G18550_A_lyrata_MN47_DAPi710E06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G18550_A_lyrata_MN47_DAPi712E07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G18550_A_lyrata_MN47_DAPi712E07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G20400_A_lyrata_MN47_DAPi709E09-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G20400_A_lyrata_MN47_DAPi709E09-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G22430_A_lyrata_MN47_DAPi711F07-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G22430_A_lyrata_MN47_DAPi711F07-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G22430_A_lyrata_MN47_DAPi712H02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G22430_A_lyrata_MN47_DAPi712H02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G23290_A_lyrata_MN47_DAPi712A02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G23290_A_lyrata_MN47_DAPi712A02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G23320_A_lyrata_MN47_DAPi711E01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G23320_A_lyrata_MN47_DAPi711E01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G23340_A_lyrata_MN47_DAPi711E08-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G23340_A_lyrata_MN47_DAPi711E08-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G24430_A_lyrata_MN47_DAPi709B10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G24430_A_lyrata_MN47_DAPi709B10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G26960_A_lyrata_MN47_DAPi710D11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G26960_A_lyrata_MN47_DAPi710D11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G28810_A_lyrata_MN47_DAPi710A06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G28810_A_lyrata_MN47_DAPi710A06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G30250_A_lyrata_MN47_DAPi711B11-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G30250_A_lyrata_MN47_DAPi711B11-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G30250_A_lyrata_MN47_DAPi712H03-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G30250_A_lyrata_MN47_DAPi712H03-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G30340_A_lyrata_MN47_DAPi710H03-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G30340_A_lyrata_MN47_DAPi710H03-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G31230_A_lyrata_MN47_DAPi711G02-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G31230_A_lyrata_MN47_DAPi711G02-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G32460_A_lyrata_MN47_DAPi709G05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G32460_A_lyrata_MN47_DAPi709G05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G33550_A_lyrata_MN47_DAPi710F01-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G33550_A_lyrata_MN47_DAPi710F01-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G35530_A_lyrata_MN47_DAPi712G09-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G35530_A_lyrata_MN47_DAPi712G09-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G37590_A_lyrata_MN47_DAPi710E09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G37590_A_lyrata_MN47_DAPi710E09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G40260_A_lyrata_MN47_DAPi709C12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G40260_A_lyrata_MN47_DAPi709C12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G40620_A_lyrata_MN47_DAPi712B12-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G40620_A_lyrata_MN47_DAPi712B12-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G40740_A_lyrata_MN47_DAPi710C11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G40740_A_lyrata_MN47_DAPi710C11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G42430_A_lyrata_MN47_DAPi710E01-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G42430_A_lyrata_MN47_DAPi710E01-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G44940_A_lyrata_MN47_DAPi709F02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G44940_A_lyrata_MN47_DAPi709F02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G45410_A_lyrata_MN47_DAPi710B02-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G45410_A_lyrata_MN47_DAPi710B02-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G45420_A_lyrata_MN47_DAPi712F06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G45420_A_lyrata_MN47_DAPi712F06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G45480_A_lyrata_MN47_DAPi710G11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G45480_A_lyrata_MN47_DAPi710G11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G45480_A_lyrata_MN47_DAPi712F09-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G45480_A_lyrata_MN47_DAPi712F09-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G46270_A_lyrata_MN47_DAPi712H11-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G46270_A_lyrata_MN47_DAPi712H11-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G46590_A_lyrata_MN47_DAPi711B10-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G46590_A_lyrata_MN47_DAPi711B10-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G46680_A_lyrata_MN47_DAPi711E11-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G46680_A_lyrata_MN47_DAPi711E11-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G46770_A_lyrata_MN47_DAPi712D10-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G46770_A_lyrata_MN47_DAPi712D10-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G47070_A_lyrata_MN47_DAPi712H04-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G47070_A_lyrata_MN47_DAPi712H04-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT2G47070_A_lyrata_MN47_DAPi712H10-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT2G47070_A_lyrata_MN47_DAPi712H10-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G01220_A_lyrata_MN47_DAPi709F01-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G01220_A_lyrata_MN47_DAPi709F01-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G01530_A_lyrata_MN47_DAPi711A05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G01530_A_lyrata_MN47_DAPi711A05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G01970_A_lyrata_MN47_DAPi709C04-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G01970_A_lyrata_MN47_DAPi709C04-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G02940_A_lyrata_MN47_DAPi709C05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G02940_A_lyrata_MN47_DAPi709C05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G02940_A_lyrata_MN47_DAPi712H04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G02940_A_lyrata_MN47_DAPi712H04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G03200_A_lyrata_MN47_DAPi710A10-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G03200_A_lyrata_MN47_DAPi710A10-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G04030_A_lyrata_MN47_DAPi711A08-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G04030_A_lyrata_MN47_DAPi711A08-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G04070_A_lyrata_MN47_DAPi712B09-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G04070_A_lyrata_MN47_DAPi712B09-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G08500_A_lyrata_MN47_DAPi709F05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G08500_A_lyrata_MN47_DAPi709F05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G08500_A_lyrata_MN47_DAPi712B05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G08500_A_lyrata_MN47_DAPi712B05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G09600_A_lyrata_MN47_DAPi709A02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G09600_A_lyrata_MN47_DAPi709A02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G10030_A_lyrata_MN47_DAPi710G03-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G10030_A_lyrata_MN47_DAPi710G03-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G10113_A_lyrata_MN47_DAPi712A04-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G10113_A_lyrata_MN47_DAPi712A04-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G10580_A_lyrata_MN47_DAPi710C01-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G10580_A_lyrata_MN47_DAPi710C01-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G11280_A_lyrata_MN47_DAPi709C06-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G11280_A_lyrata_MN47_DAPi709C06-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G12250_A_lyrata_MN47_DAPi710E03-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G12250_A_lyrata_MN47_DAPi710E03-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G12250_A_lyrata_MN47_DAPi712A07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G12250_A_lyrata_MN47_DAPi712A07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G12730_A_lyrata_MN47_DAPi711B08-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G12730_A_lyrata_MN47_DAPi711B08-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G14180_A_lyrata_MN47_DAPi711D03-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G14180_A_lyrata_MN47_DAPi711D03-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G15170_A_lyrata_MN47_DAPi712F10-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G15170_A_lyrata_MN47_DAPi712F10-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G15210_A_lyrata_MN47_DAPi711D10-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G15210_A_lyrata_MN47_DAPi711D10-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G15270_A_lyrata_MN47_DAPi711F08-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G15270_A_lyrata_MN47_DAPi711F08-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G15500_A_lyrata_MN47_DAPi712E09-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G15500_A_lyrata_MN47_DAPi712E09-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G16280_A_lyrata_MN47_DAPi709E11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G16280_A_lyrata_MN47_DAPi709E11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G17730_A_lyrata_MN47_DAPi710C06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G17730_A_lyrata_MN47_DAPi710C06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G18400_A_lyrata_MN47_DAPi709C10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G18400_A_lyrata_MN47_DAPi709C10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G18990_A_lyrata_MN47_DAPi712B06-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G18990_A_lyrata_MN47_DAPi712B06-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G18990_A_lyrata_MN47_DAPi712D11-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G18990_A_lyrata_MN47_DAPi712D11-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G20310_A_lyrata_MN47_DAPi711F06-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G20310_A_lyrata_MN47_DAPi711F06-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G20770_A_lyrata_MN47_DAPi712D05-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G20770_A_lyrata_MN47_DAPi712D05-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G22830_A_lyrata_MN47_DAPi711G01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G22830_A_lyrata_MN47_DAPi711G01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G24050_A_lyrata_MN47_DAPi709H10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G24050_A_lyrata_MN47_DAPi709H10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G24120_A_lyrata_MN47_DAPi711B06-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G24120_A_lyrata_MN47_DAPi711B06-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G25990_A_lyrata_MN47_DAPi710H05-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G25990_A_lyrata_MN47_DAPi710H05-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G27010_A_lyrata_MN47_DAPi709C02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G27010_A_lyrata_MN47_DAPi709C02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G27010_A_lyrata_MN47_DAPi712C04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G27010_A_lyrata_MN47_DAPi712C04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G28920_A_lyrata_MN47_DAPi709A08-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G28920_A_lyrata_MN47_DAPi709A08-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G30210_A_lyrata_MN47_DAPi710C02-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G30210_A_lyrata_MN47_DAPi710C02-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G46590_A_lyrata_MN47_DAPi710D06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G46590_A_lyrata_MN47_DAPi710D06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G49530_A_lyrata_MN47_DAPi712H07-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G49530_A_lyrata_MN47_DAPi712H07-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G50060_A_lyrata_MN47_DAPi711D07-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G50060_A_lyrata_MN47_DAPi711D07-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G50060_A_lyrata_MN47_DAPi712G02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G50060_A_lyrata_MN47_DAPi712G02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G50260_A_lyrata_MN47_DAPi711D06-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G50260_A_lyrata_MN47_DAPi711D06-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G50260_A_lyrata_MN47_DAPi712D02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G50260_A_lyrata_MN47_DAPi712D02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G50410_A_lyrata_MN47_DAPi710B03-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G50410_A_lyrata_MN47_DAPi710B03-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G50410_A_lyrata_MN47_DAPi712H06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G50410_A_lyrata_MN47_DAPi712H06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G52440_A_lyrata_MN47_DAPi709B11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G52440_A_lyrata_MN47_DAPi709B11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G55370_A_lyrata_MN47_DAPi710H10-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G55370_A_lyrata_MN47_DAPi710H10-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G56400_A_lyrata_MN47_DAPi711A04-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G56400_A_lyrata_MN47_DAPi711A04-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G56400_A_lyrata_MN47_DAPi712B02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G56400_A_lyrata_MN47_DAPi712B02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G56850_A_lyrata_MN47_DAPi712D12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G56850_A_lyrata_MN47_DAPi712D12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G57920_A_lyrata_MN47_DAPi709E12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G57920_A_lyrata_MN47_DAPi709E12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G57920_A_lyrata_MN47_DAPi712D06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G57920_A_lyrata_MN47_DAPi712D06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G60490_A_lyrata_MN47_DAPi710A02-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G60490_A_lyrata_MN47_DAPi710A02-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G60530_A_lyrata_MN47_DAPi712E05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G60530_A_lyrata_MN47_DAPi712E05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT3G62420_A_lyrata_MN47_DAPi712C07-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT3G62420_A_lyrata_MN47_DAPi712C07-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G00730_A_lyrata_MN47_DAPi712C11-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G00730_A_lyrata_MN47_DAPi712C11-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G00730_A_lyrata_MN47_DAPi712E05-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G00730_A_lyrata_MN47_DAPi712E05-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G01250_A_lyrata_MN47_DAPi711A02-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G01250_A_lyrata_MN47_DAPi711A02-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G01280_A_lyrata_MN47_DAPi709E03-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G01280_A_lyrata_MN47_DAPi709E03-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G01500_A_lyrata_MN47_DAPi712G02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G01500_A_lyrata_MN47_DAPi712G02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G01550_A_lyrata_MN47_DAPi710D08-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G01550_A_lyrata_MN47_DAPi710D08-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G06746_A_lyrata_MN47_DAPi709E10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G06746_A_lyrata_MN47_DAPi709E10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G10350_A_lyrata_MN47_DAPi712E11-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G10350_A_lyrata_MN47_DAPi712E11-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G14770_A_lyrata_MN47_DAPi712C04-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G14770_A_lyrata_MN47_DAPi712C04-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G14770_A_lyrata_MN47_DAPi712F10-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G14770_A_lyrata_MN47_DAPi712F10-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G16750_A_lyrata_MN47_DAPi711E12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G16750_A_lyrata_MN47_DAPi711E12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G17980_A_lyrata_MN47_DAPi712D03-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G17980_A_lyrata_MN47_DAPi712D03-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G17980_A_lyrata_MN47_DAPi712E10-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G17980_A_lyrata_MN47_DAPi712E10-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G18450_A_lyrata_MN47_DAPi712G01-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G18450_A_lyrata_MN47_DAPi712G01-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G21030_A_lyrata_MN47_DAPi712E02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G21030_A_lyrata_MN47_DAPi712E02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G21080_A_lyrata_MN47_DAPi710G07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G21080_A_lyrata_MN47_DAPi710G07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G23550_A_lyrata_MN47_DAPi709E05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G23550_A_lyrata_MN47_DAPi709E05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G24240_A_lyrata_MN47_DAPi711A03-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G24240_A_lyrata_MN47_DAPi711A03-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G25470_A_lyrata_MN47_DAPi709D11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G25470_A_lyrata_MN47_DAPi709D11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G25470_A_lyrata_MN47_DAPi712B06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G25470_A_lyrata_MN47_DAPi712B06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G25480_A_lyrata_MN47_DAPi709D03-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G25480_A_lyrata_MN47_DAPi709D03-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G25480_A_lyrata_MN47_DAPi712F04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G25480_A_lyrata_MN47_DAPi712F04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G25490_A_lyrata_MN47_DAPi710E07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G25490_A_lyrata_MN47_DAPi710E07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G25490_A_lyrata_MN47_DAPi712A08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G25490_A_lyrata_MN47_DAPi712A08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G28500_A_lyrata_MN47_DAPi710E05-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G28500_A_lyrata_MN47_DAPi710E05-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G31060_A_lyrata_MN47_DAPi709A03-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G31060_A_lyrata_MN47_DAPi709A03-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G31800_A_lyrata_MN47_DAPi711C07-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G31800_A_lyrata_MN47_DAPi711C07-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G31800_A_lyrata_MN47_DAPi712F02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G31800_A_lyrata_MN47_DAPi712F02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G32730_A_lyrata_MN47_DAPi712C05-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G32730_A_lyrata_MN47_DAPi712C05-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G34410_A_lyrata_MN47_DAPi711F11-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G34410_A_lyrata_MN47_DAPi711F11-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G34590_A_lyrata_MN47_DAPi712G07-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G34590_A_lyrata_MN47_DAPi712G07-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G36620_A_lyrata_MN47_DAPi712D02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G36620_A_lyrata_MN47_DAPi712D02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G36740_A_lyrata_MN47_DAPi712H03-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G36740_A_lyrata_MN47_DAPi712H03-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G36780_A_lyrata_MN47_DAPi711H06-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G36780_A_lyrata_MN47_DAPi711H06-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT4G38000_A_lyrata_MN47_DAPi709B02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT4G38000_A_lyrata_MN47_DAPi709B02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G02320_A_lyrata_MN47_DAPi710G02-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G02320_A_lyrata_MN47_DAPi710G02-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G02320_A_lyrata_MN47_DAPi712G06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G02320_A_lyrata_MN47_DAPi712G06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G02460_A_lyrata_MN47_DAPi712B04-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G02460_A_lyrata_MN47_DAPi712B04-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G02840_A_lyrata_MN47_DAPi709E07-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G02840_A_lyrata_MN47_DAPi709E07-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G03150_A_lyrata_MN47_DAPi710E08-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G03150_A_lyrata_MN47_DAPi710E08-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G03150_A_lyrata_MN47_DAPi712D08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G03150_A_lyrata_MN47_DAPi712D08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G03790_A_lyrata_MN47_DAPi709B12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G03790_A_lyrata_MN47_DAPi709B12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G03790_A_lyrata_MN47_DAPi712C06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G03790_A_lyrata_MN47_DAPi712C06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G05550_A_lyrata_MN47_DAPi710G12-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G05550_A_lyrata_MN47_DAPi710G12-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G05550_A_lyrata_MN47_DAPi712A10-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G05550_A_lyrata_MN47_DAPi712A10-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G05790_A_lyrata_MN47_DAPi711G12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G05790_A_lyrata_MN47_DAPi711G12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G06100_A_lyrata_MN47_DAPi712H02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G06100_A_lyrata_MN47_DAPi712H02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G07310_A_lyrata_MN47_DAPi709A05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G07310_A_lyrata_MN47_DAPi709A05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G07680_A_lyrata_MN47_DAPi712F08-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G07680_A_lyrata_MN47_DAPi712F08-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G08130_A_lyrata_MN47_DAPi709H05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G08130_A_lyrata_MN47_DAPi709H05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G08330_A_lyrata_MN47_DAPi711E05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G08330_A_lyrata_MN47_DAPi711E05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G08520_A_lyrata_MN47_DAPi711E02-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G08520_A_lyrata_MN47_DAPi711E02-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G09410_A_lyrata_MN47_DAPi712G06-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G09410_A_lyrata_MN47_DAPi712G06-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G09410_A_lyrata_MN47_DAPi712G11-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G09410_A_lyrata_MN47_DAPi712G11-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G10030_A_lyrata_MN47_DAPi709C11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G10030_A_lyrata_MN47_DAPi709C11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G10030_A_lyrata_MN47_DAPi712A06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G10030_A_lyrata_MN47_DAPi712A06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G11260_A_lyrata_MN47_DAPi712D12-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G11260_A_lyrata_MN47_DAPi712D12-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G11260_A_lyrata_MN47_DAPi712F11-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G11260_A_lyrata_MN47_DAPi712F11-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G11510_A_lyrata_MN47_DAPi712H06-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G11510_A_lyrata_MN47_DAPi712H06-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G13080_A_lyrata_MN47_DAPi711B12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G13080_A_lyrata_MN47_DAPi711B12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G13790_A_lyrata_MN47_DAPi712F02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G13790_A_lyrata_MN47_DAPi712F02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G13910_A_lyrata_MN47_DAPi709A04-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G13910_A_lyrata_MN47_DAPi709A04-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G14960_A_lyrata_MN47_DAPi710G08-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G14960_A_lyrata_MN47_DAPi710G08-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G14960_A_lyrata_MN47_DAPi712E08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G14960_A_lyrata_MN47_DAPi712E08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G16820_A_lyrata_MN47_DAPi712G05-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G16820_A_lyrata_MN47_DAPi712G05-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G17300_A_lyrata_MN47_DAPi710F09-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G17300_A_lyrata_MN47_DAPi710F09-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G17300_A_lyrata_MN47_DAPi712H08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G17300_A_lyrata_MN47_DAPi712H08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G17800_A_lyrata_MN47_DAPi712C02-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G17800_A_lyrata_MN47_DAPi712C02-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G18270_A_lyrata_MN47_DAPi712C10-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G18270_A_lyrata_MN47_DAPi712C10-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G18560_A_lyrata_MN47_DAPi710D07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G18560_A_lyrata_MN47_DAPi710D07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G18560_A_lyrata_MN47_DAPi712H07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G18560_A_lyrata_MN47_DAPi712H07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G19790_A_lyrata_MN47_DAPi710A07-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G19790_A_lyrata_MN47_DAPi710A07-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G19790_A_lyrata_MN47_DAPi712G07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G19790_A_lyrata_MN47_DAPi712G07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G22990_A_lyrata_MN47_DAPi710F02-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G22990_A_lyrata_MN47_DAPi710F02-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G24110_A_lyrata_MN47_DAPi711B09-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G24110_A_lyrata_MN47_DAPi711B09-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G25190_A_lyrata_MN47_DAPi711C05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G25190_A_lyrata_MN47_DAPi711C05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G25810_A_lyrata_MN47_DAPi709E04-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G25810_A_lyrata_MN47_DAPi709E04-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G26170_A_lyrata_MN47_DAPi710B11-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G26170_A_lyrata_MN47_DAPi710B11-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G39610_A_lyrata_MN47_DAPi712D07-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G39610_A_lyrata_MN47_DAPi712D07-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G39760_A_lyrata_MN47_DAPi711G03-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G39760_A_lyrata_MN47_DAPi711G03-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G39760_A_lyrata_MN47_DAPi712A02-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G39760_A_lyrata_MN47_DAPi712A02-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G41570_A_lyrata_MN47_DAPi711G08-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G41570_A_lyrata_MN47_DAPi711G08-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G45300_A_lyrata_MN47_DAPi712D04-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G45300_A_lyrata_MN47_DAPi712D04-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G45300_A_lyrata_MN47_DAPi712G10-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G45300_A_lyrata_MN47_DAPi712G10-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G45580_A_lyrata_MN47_DAPi709A11-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G45580_A_lyrata_MN47_DAPi709A11-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G47230_A_lyrata_MN47_DAPi709G06-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G47230_A_lyrata_MN47_DAPi709G06-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G47370_A_lyrata_MN47_DAPi711B05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G47370_A_lyrata_MN47_DAPi711B05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G47390_A_lyrata_MN47_DAPi711H02-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G47390_A_lyrata_MN47_DAPi711H02-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G47390_A_lyrata_MN47_DAPi712F01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G47390_A_lyrata_MN47_DAPi712F01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G47660_A_lyrata_MN47_DAPi710B06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G47660_A_lyrata_MN47_DAPi710B06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G51190_A_lyrata_MN47_DAPi709G07-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G51190_A_lyrata_MN47_DAPi709G07-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G51990_A_lyrata_MN47_DAPi710C04-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G51990_A_lyrata_MN47_DAPi710C04-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G52020_A_lyrata_MN47_DAPi709A10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G52020_A_lyrata_MN47_DAPi709A10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G52660_A_lyrata_MN47_DAPi709A06-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G52660_A_lyrata_MN47_DAPi709A06-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G52830_A_lyrata_MN47_DAPi710G06-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G52830_A_lyrata_MN47_DAPi710G06-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G52830_A_lyrata_MN47_DAPi712F07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G52830_A_lyrata_MN47_DAPi712F07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G53950_A_lyrata_MN47_DAPi712A10-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G53950_A_lyrata_MN47_DAPi712A10-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G54230_A_lyrata_MN47_DAPi709D07-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G54230_A_lyrata_MN47_DAPi709D07-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G56110_A_lyrata_MN47_DAPi709F12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G56110_A_lyrata_MN47_DAPi709F12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G56110_A_lyrata_MN47_DAPi712E06-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G56110_A_lyrata_MN47_DAPi712E06-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G56840_A_lyrata_MN47_DAPi710D01-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G56840_A_lyrata_MN47_DAPi710D01-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G57620_A_lyrata_MN47_DAPi712G12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G57620_A_lyrata_MN47_DAPi712G12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G58850_A_lyrata_MN47_DAPi710A05-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G58850_A_lyrata_MN47_DAPi710A05-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G58900_A_lyrata_MN47_DAPi711H04-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G58900_A_lyrata_MN47_DAPi711H04-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G60130_A_lyrata_MN47_DAPi710A04-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G60130_A_lyrata_MN47_DAPi710A04-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G60130_A_lyrata_MN47_DAPi712C07-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G60130_A_lyrata_MN47_DAPi712C07-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G60850_A_lyrata_MN47_DAPi711F05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G60850_A_lyrata_MN47_DAPi711F05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G61620_A_lyrata_MN47_DAPi712H05-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G61620_A_lyrata_MN47_DAPi712H05-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62000_A_lyrata_MN47_DAPi711D08-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62000_A_lyrata_MN47_DAPi711D08-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62020_A_lyrata_MN47_DAPi709G02-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62020_A_lyrata_MN47_DAPi709G02-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62020_A_lyrata_MN47_DAPi712E04-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62020_A_lyrata_MN47_DAPi712E04-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62320_A_lyrata_MN47_DAPi710A03-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62320_A_lyrata_MN47_DAPi710A03-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62470_A_lyrata_MN47_DAPi710A08-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62470_A_lyrata_MN47_DAPi710A08-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62470_A_lyrata_MN47_DAPi712C08-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62470_A_lyrata_MN47_DAPi712C08-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62940_A_lyrata_MN47_DAPi709D05-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62940_A_lyrata_MN47_DAPi709D05-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G62940_A_lyrata_MN47_DAPi712A05-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G62940_A_lyrata_MN47_DAPi712A05-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G64060_A_lyrata_MN47_DAPi709F10-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G64060_A_lyrata_MN47_DAPi709F10-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G64750_A_lyrata_MN47_DAPi711G09-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G64750_A_lyrata_MN47_DAPi711G09-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G64750_A_lyrata_MN47_DAPi712E03-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G64750_A_lyrata_MN47_DAPi712E03-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G65130_A_lyrata_MN47_DAPi709B01-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G65130_A_lyrata_MN47_DAPi709B01-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G65210_A_lyrata_MN47_DAPi712G11-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G65210_A_lyrata_MN47_DAPi712G11-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G65310_A_lyrata_MN47_DAPi710G10-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G65310_A_lyrata_MN47_DAPi710G10-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G65410_A_lyrata_MN47_DAPi711D09-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G65410_A_lyrata_MN47_DAPi711D09-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G65410_A_lyrata_MN47_DAPi712D03-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G65410_A_lyrata_MN47_DAPi712D03-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G66300_A_lyrata_MN47_DAPi712E10-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G66300_A_lyrata_MN47_DAPi712E10-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G66700_A_lyrata_MN47_DAPi712A06-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G66700_A_lyrata_MN47_DAPi712A06-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G66940_A_lyrata_MN47_DAPi710B10-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G66940_A_lyrata_MN47_DAPi710B10-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G67300_A_lyrata_MN47_DAPi711B01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G67300_A_lyrata_MN47_DAPi711B01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G67300_A_lyrata_MN47_DAPi712B01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G67300_A_lyrata_MN47_DAPi712B01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py AT5G67580_A_lyrata_MN47_DAPi711D05-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes AT5G67580_A_lyrata_MN47_DAPi711D05-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0001s0116.1_A_lyrata_MN47_DAPi712C10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0001s0116.1_A_lyrata_MN47_DAPi712C10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0001s1194.1_A_lyrata_MN47_DAPi712D03-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0001s1194.1_A_lyrata_MN47_DAPi712D03-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0001s3581.1.p_A_lyrata_MN47_DAPi712D01-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0001s3581.1.p_A_lyrata_MN47_DAPi712D01-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0002s1646.1_A_lyrata_MN47_DAPi712C12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0002s1646.1_A_lyrata_MN47_DAPi712C12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0002s1959.1_A_lyrata_MN47_DAPi712H10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0002s1959.1_A_lyrata_MN47_DAPi712H10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0002s2670.1_A_lyrata_MN47_DAPi712E11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0002s2670.1_A_lyrata_MN47_DAPi712E11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0003s1161.1.p_A_lyrata_MN47_DAPi712G07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0003s1161.1.p_A_lyrata_MN47_DAPi712G07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0004s2291.1_A_lyrata_MN47_DAPi712A09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0004s2291.1_A_lyrata_MN47_DAPi712A09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0004s2898.1.p_A_lyrata_MN47_DAPi712B07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0004s2898.1.p_A_lyrata_MN47_DAPi712B07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0008s0039.1_A_lyrata_MN47_DAPi712F09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0008s0039.1_A_lyrata_MN47_DAPi712F09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Carub.0008s0285.1_A_lyrata_MN47_DAPi712D08-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Carub.0008s0285.1_A_lyrata_MN47_DAPi712D08-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi709A01-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi709A01-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi709A12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi709A12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi709H01-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi709H01-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi709H12-ORGi5038-96P169.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi709H12-ORGi5038-96P169.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi710A12-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi710A12-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi710A12-ORGi5038-96P151-repool.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi710A12-ORGi5038-96P151-repool.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi710H01-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi710H01-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi710H01-ORGi5038-96P151-repool.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi710H01-ORGi5038-96P151-repool.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi710H12-ORGi5038-96P151.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi710H12-ORGi5038-96P151.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi710H12-ORGi5038-96P151-repool.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi710H12-ORGi5038-96P151-repool.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi711A01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi711A01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi711A12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi711A12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi711H01-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi711H01-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi711H12-ORGi5038-96P166.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi711H12-ORGi5038-96P166.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P155-repool.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P155-repool.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A01-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A12-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A12-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712A12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712A12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712H01-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712H01-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712H01-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712H01-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P155.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P155.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P155-repool.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P155-repool.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P220.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P220.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Control_TF_DNA_A_lyrata_MN47_DAPi712H12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os01g17260.2_A_lyrata_MN47_DAPi712H07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os01g17260.2_A_lyrata_MN47_DAPi712H07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os01g18240.1_A_lyrata_MN47_DAPi712G04-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os01g18240.1_A_lyrata_MN47_DAPi712G04-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os01g46970.1_A_lyrata_MN47_DAPi712C07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os01g46970.1_A_lyrata_MN47_DAPi712C07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os01g51154.1_A_lyrata_MN47_DAPi712A11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os01g51154.1_A_lyrata_MN47_DAPi712A11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os02g33430.1_A_lyrata_MN47_DAPi712D05-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os02g33430.1_A_lyrata_MN47_DAPi712D05-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os02g42970.1_A_lyrata_MN47_DAPi712E03-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os02g42970.1_A_lyrata_MN47_DAPi712E03-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os03g21800.1_A_lyrata_MN47_DAPi712B09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os03g21800.1_A_lyrata_MN47_DAPi712B09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os06g07030.1_A_lyrata_MN47_DAPi712E01-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os06g07030.1_A_lyrata_MN47_DAPi712E01-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os08g06110.3_A_lyrata_MN47_DAPi712D10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os08g06110.3_A_lyrata_MN47_DAPi712D10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os08g37970.1_A_lyrata_MN47_DAPi712A06-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os08g37970.1_A_lyrata_MN47_DAPi712A06-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os09g25060.1_A_lyrata_MN47_DAPi712F11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os09g25060.1_A_lyrata_MN47_DAPi712F11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os10g26500.1_A_lyrata_MN47_DAPi712D12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os10g26500.1_A_lyrata_MN47_DAPi712D12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LOC_Os10g41200.1_A_lyrata_MN47_DAPi712G09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes LOC_Os10g41200.1_A_lyrata_MN47_DAPi712G09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc01g095460.3.1_A_lyrata_MN47_DAPi712D07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc01g095460.3.1_A_lyrata_MN47_DAPi712D07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc01g102340.3.1_A_lyrata_MN47_DAPi712H04-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc01g102340.3.1_A_lyrata_MN47_DAPi712H04-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc03g116890.3.1_A_lyrata_MN47_DAPi712G11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc03g116890.3.1_A_lyrata_MN47_DAPi712G11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc04g078640.3.1_A_lyrata_MN47_DAPi712F01-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc04g078640.3.1_A_lyrata_MN47_DAPi712F01-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc05g007180.3.1_A_lyrata_MN47_DAPi712E12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc05g007180.3.1_A_lyrata_MN47_DAPi712E12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc06g048630.3.1_A_lyrata_MN47_DAPi712C09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc06g048630.3.1_A_lyrata_MN47_DAPi712C09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc07g040920.2.1_A_lyrata_MN47_DAPi712B11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc07g040920.2.1_A_lyrata_MN47_DAPi712B11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc08g068320.3.1_A_lyrata_MN47_DAPi712C04-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc08g068320.3.1_A_lyrata_MN47_DAPi712C04-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc08g078340.3.1_A_lyrata_MN47_DAPi712H09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc08g078340.3.1_A_lyrata_MN47_DAPi712H09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc08g079120.3.1_A_lyrata_MN47_DAPi712F03-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc08g079120.3.1_A_lyrata_MN47_DAPi712F03-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc10g005080.3.1_A_lyrata_MN47_DAPi712E10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc10g005080.3.1_A_lyrata_MN47_DAPi712E10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Solyc11g064950.3.1_A_lyrata_MN47_DAPi712A08-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes Solyc11g064950.3.1_A_lyrata_MN47_DAPi712A08-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013586407.1_A_lyrata_MN47_DAPi712F07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013586407.1_A_lyrata_MN47_DAPi712F07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013587350.1_A_lyrata_MN47_DAPi712B10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013587350.1_A_lyrata_MN47_DAPi712B10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013587997.1_A_lyrata_MN47_DAPi712D11-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013587997.1_A_lyrata_MN47_DAPi712D11-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013589913.1_A_lyrata_MN47_DAPi712G10-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013589913.1_A_lyrata_MN47_DAPi712G10-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013589953.1_A_lyrata_MN47_DAPi712B12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013589953.1_A_lyrata_MN47_DAPi712B12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013602769.1_A_lyrata_MN47_DAPi712C03-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013602769.1_A_lyrata_MN47_DAPi712C03-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013609718.1_A_lyrata_MN47_DAPi712G12-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013609718.1_A_lyrata_MN47_DAPi712G12-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013613838.1_A_lyrata_MN47_DAPi712C08-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013613838.1_A_lyrata_MN47_DAPi712C08-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013615900.1_A_lyrata_MN47_DAPi712E09-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013615900.1_A_lyrata_MN47_DAPi712E09-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013629448.1_A_lyrata_MN47_DAPi712H03-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013629448.1_A_lyrata_MN47_DAPi712H03-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013631386.1_A_lyrata_MN47_DAPi712A07-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013631386.1_A_lyrata_MN47_DAPi712A07-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013631649.1_A_lyrata_MN47_DAPi712B05-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013631649.1_A_lyrata_MN47_DAPi712B05-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py XP_013634112.1_A_lyrata_MN47_DAPi712H08-ORGi5038-96P247.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Arabidopsis_lyrata/Arabidopsis_lyrata.v.1.0.19.chrom.sizes XP_013634112.1_A_lyrata_MN47_DAPi712H08-ORGi5038-96P247.2x36mers.InsertLength -uniqueBAM -normalize