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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlGABL4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlGABL4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlGATA9_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlGATA9_1.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlGRAS3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlGRAS3.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlHB1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlHB1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlHZIP2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlHZIP2.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlMADF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlMADF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlMYB44.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlMYB44.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlMYBL4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlMYBL4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlNAM1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlNAM1.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlNAM4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlNAM4.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlTCP12.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlTCP12.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlTCP18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlTCP18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlWOX14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlWOX14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlWRKY11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlWRKY11.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlWRKY40.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlWRKY40.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlWRKY6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlWRKY6.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlYABBY2a.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlYABBY2a.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZF2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZF2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZF3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZF3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZF6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZF6.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZFCL3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZFCL3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZIP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZIP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZIP3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZIP3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlZIP5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlZIP5.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlbHLH014.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlbHLH014.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SlbHLH147.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SlbHLH147.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfA2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfA2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfA4a.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfA4a.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfA6b.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfA6b.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfA7.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfA7.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfB1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfB1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfB2a.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfB2a.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Red-SolycHsfC1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-SolycHsfC1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-TDR4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-TDR4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-TM29.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-TM29.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-VAHOX1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-VAHOX1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-cip2b.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-cip2b.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Red-gras6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Red-gras6.1x36mers.QC