python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-APETALA2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-APETALA2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-APETALA2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-APETALA2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-ARF4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-ARF4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-ARF4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-ARF4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-BES1_BZR1hp2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-BES1_BZR1hp2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-BES1_BZR1hp2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-BES1_BZR1hp2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-BHLH1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-BHLH1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-BHLH1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-BHLH1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CBF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CBF2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CBF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CBF2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CIP2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CIP2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CIP2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CIP2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CNR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CNR.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CNR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CNR.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CZFP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CZFP1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-CZFP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-CZFP1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-DREB3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-DREB3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-DREB3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-DREB3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Dof4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Dof4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Dof4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Dof4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-EIL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-EIL4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-ERF10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-ERF10.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-ERF10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-ERF10.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-ERF9.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-ERF9.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-ERF9.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-ERF9.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-GRAS10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-GRAS10.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-GRAS10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-GRAS10.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-GRAS12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-GRAS12.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-GRAS12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-GRAS12.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-GRAS4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-GRAS4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-GRAS4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-GRAS4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-HALO.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-HALO.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-HALO.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-HALO.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-JERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-JERF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-JERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-JERF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LAT61.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LAT61.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LAT61.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LAT61.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LES1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LES1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LES1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LES1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LOB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LOB1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LOB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LOB1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LOB38.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LOB38.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LOB38.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LOB38.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LOB42.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LOB42.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LOB42.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LOB42.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LSD1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LSD1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LSD1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LSD1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LeT12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LeT12.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LeT12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LeT12.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LeZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LeZIP2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-LeZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-LeZIP2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MADS-MC.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MADS-MC.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MADS-MC.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MADS-MC.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MADS-RIN.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MADS-RIN.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MADS-RIN.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MADS-RIN.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MADS1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MADS1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MADS1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MADS1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MBD5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MBD5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MBD5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MBD5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MBP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MBP7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-MBP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-MBP7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-NAC-NOR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-NAC-NOR.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-NAC-NOR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-NAC-NOR.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-NAC6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-NAC6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-NAC6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-NAC6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-NF-YB-3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-NF-YB-3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-NF-YB-3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-NF-YB-3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-PTI4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-PTI4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-PTI4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-PTI4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SCL32-like.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SCL32-like.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SCL32-like.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SCL32-like.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SEPALLATA3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SEPALLATA3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SEPALLATA3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SEPALLATA3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_C_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_C_4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_C_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_C_4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_C_6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_C_6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_C_6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_C_6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_E_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_E_4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_E_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_E_4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-Sl-ERF_F_5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-Sl-ERF_F_5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlBEL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlBEL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlBEL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlBEL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlC3H11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlC3H11.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlC3H11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlC3H11.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlC3H48.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlC3H48.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlC3H48.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlC3H48.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlCOL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlCOL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlCOL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlCOL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlDRP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlDRP1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlDRP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlDRP1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlDof14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlDof14.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlDof14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlDof14.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF1a-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF1a-1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF1a-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF1a-1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF1a-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF1a-2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF1a-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF1a-2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF36.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF36.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF36.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF36.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF4-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF4-1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF4-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF4-1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF4-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF4-2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF4-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF4-2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF5-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF5-2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlERF5-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlERF5-2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGABL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGABL2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGABL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGABL2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGABL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGABL4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGABL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGABL4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGATA9_1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGATA9_1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGATA9_1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGATA9_1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGATA9_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGATA9_2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGATA9_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGATA9_2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGRAS3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGRAS3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGRAS3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGRAS3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGT2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGT2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlGT2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlGT2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlHB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlHB1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlHB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlHB1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlHZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlHZIP2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlHZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlHZIP2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlHZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlHZIP3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlHZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlHZIP3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMADF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMADF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMADF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMADF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYB44.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYB44.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYB44.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYB44.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYB70.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYB70.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYB70.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYB70.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYB91.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYB91.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYB91.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYB91.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlMYBL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlMYBL4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlNAM5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlNAM5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlTCP12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlTCP12.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlTCP12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlTCP12.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlTCP15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlTCP15.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlTCP15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlTCP15.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlTCP18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlTCP18.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlTCP18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlTCP18.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWOX14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWOX14.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWOX14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWOX14.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY11.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY11.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY23.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY23.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY40.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY40.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY40.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY40.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY41.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY41.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY41.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY41.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY81.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY81.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlWRKY81.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlWRKY81.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlYABBY2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlYABBY2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlYABBY2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlYABBY2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZF6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZF6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZFCL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZFCL3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZFCL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZFCL3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlZIP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlZIP7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlbHLH014.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlbHLH014.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlbHLH014.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlbHLH014.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlbHLH138.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlbHLH138.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlbHLH138.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlbHLH138.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlbHLH147.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlbHLH147.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SlbHLH147.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SlbHLH147.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA4a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA4a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA4a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA4a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA6b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA6b.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA6b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA6b.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfA7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfA7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfB1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfB1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfB2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfB2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfB2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfB2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfB2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfB2b.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfB2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfB2b.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfC1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfC1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-SolycHsfC1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-SolycHsfC1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-TDR4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-TDR4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-TDR4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-TDR4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-TM29.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-TM29.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-TM29.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-TM29.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-VAHOX1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-VAHOX1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-VAHOX1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-VAHOX1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-cip2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-cip2b.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-cip2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-cip2b.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-gras6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-gras6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Green-gras6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Green-gras6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_100_C.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_100_C.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_100_C.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_100_C.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_150_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_150_D.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_150_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_150_D.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_300_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_300_D.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_300_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_300_D.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_50_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_50_D.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-DAP_50_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-DAP_50_D.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_100_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_100_A.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_100_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_100_A.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_150_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_150_A.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_150_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_150_A.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_300_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_300_A.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_300_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_300_A.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_50_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_50_A.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Green-ampDAP_50_A.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Green-ampDAP_50_A.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_100_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_100_E.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_100_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_100_E.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_150_G.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_150_G.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_150_G.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_150_G.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_300_G.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_300_G.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_300_G.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_300_G.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_50_G.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_50_G.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- HALO-Red-DAP_50_G.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes HALO-Red-DAP_50_G.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_100_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_100_D.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_100_D.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_100_D.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_150_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_150_E.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_150_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_150_E.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_300_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_300_E.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_300_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_300_E.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_50_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_50_E.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-DAP_50_E.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-DAP_50_E.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_100_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_100_B.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_100_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_100_B.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_150_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_150_B.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_150_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_150_B.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_300_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_300_B.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_300_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_300_B.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_50_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_50_B.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Green-ampDAP_50_B.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Green-ampDAP_50_B.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_100_F.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_100_F.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_100_F.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_100_F.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_150_H.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_150_H.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_150_H.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_150_H.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_300_H.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_300_H.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_300_H.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_300_H.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_50_H.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_50_H.end2.fastq.gz.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MBD5-Red-DAP_50_H.end2.fastq.gz.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes MBD5-Red-DAP_50_H.end2.fastq.gz.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-APETALA2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-APETALA2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-APETALA2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-APETALA2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-ARF4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-ARF4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-ARF4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-ARF4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-BES1_BZR1hp2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-BES1_BZR1hp2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-BES1_BZR1hp2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-BES1_BZR1hp2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-BHLH1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-BHLH1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-BHLH1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-BHLH1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CBF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CBF2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CBF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CBF2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CIP2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CIP2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CIP2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CIP2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CNR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CNR.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CNR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CNR.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CZFP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CZFP1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-CZFP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-CZFP1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-DREB3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-DREB3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-DREB3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-DREB3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Dof4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Dof4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Dof4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Dof4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-EIL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-EIL4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-ERF10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-ERF10.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-ERF10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-ERF10.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-ERF9.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-ERF9.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-ERF9.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-ERF9.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-GRAS10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-GRAS10.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-GRAS10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-GRAS10.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-GRAS12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-GRAS12.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-GRAS12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-GRAS12.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-GRAS4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-GRAS4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-GRAS4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-GRAS4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-HALO.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-HALO.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-HALO.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-HALO.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-JERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-JERF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-JERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-JERF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LAT61.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LAT61.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LAT61.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LAT61.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LES1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LES1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LES1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LES1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LOB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LOB1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LOB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LOB1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LOB38.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LOB38.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LOB38.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LOB38.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LOB42.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LOB42.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LOB42.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LOB42.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LSD1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LSD1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LSD1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LSD1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LeT12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LeT12.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LeT12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LeT12.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LeZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LeZIP2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-LeZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-LeZIP2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MADS-MC.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MADS-MC.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MADS-MC.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MADS-MC.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MADS-RIN.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MADS-RIN.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MADS-RIN.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MADS-RIN.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MADS1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MADS1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MADS1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MADS1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MBD5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MBD5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MBD5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MBD5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MBP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MBP7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-MBP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-MBP7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-NAC-NOR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-NAC-NOR.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-NAC-NOR.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-NAC-NOR.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-NAC6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-NAC6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-NAC6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-NAC6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-NF-YB-3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-NF-YB-3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-NF-YB-3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-NF-YB-3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-PTI4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-PTI4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-PTI4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-PTI4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SCL32-like.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SCL32-like.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SCL32-like.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SCL32-like.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SEPALLATA3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SEPALLATA3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SEPALLATA3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SEPALLATA3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_C_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_C_4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_C_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_C_4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_C_6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_C_6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_C_6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_C_6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_E_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_E_4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_E_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_E_4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-Sl-ERF_F_5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-Sl-ERF_F_5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlBEL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlBEL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlBEL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlBEL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlC3H11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlC3H11.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlC3H11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlC3H11.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlC3H48.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlC3H48.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlC3H48.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlC3H48.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlCOL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlCOL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlCOL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlCOL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlDRP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlDRP1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlDRP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlDRP1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlDof14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlDof14.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlDof14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlDof14.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF1a-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF1a-1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF1a-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF1a-1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF1a-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF1a-2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF1a-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF1a-2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF36.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF36.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF36.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF36.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF4-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF4-1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF4-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF4-1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF4-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF4-2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF4-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF4-2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlERF5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlERF5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGABL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGABL2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGABL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGABL2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGABL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGABL4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGABL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGABL4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGATA9_1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGATA9_1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGATA9_1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGATA9_1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGATA9_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGATA9_2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGATA9_2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGATA9_2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGRAS3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGRAS3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGRAS3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGRAS3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGT2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGT2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlGT2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlGT2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlHB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlHB1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlHB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlHB1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlHZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlHZIP2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlHZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlHZIP2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlHZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlHZIP3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlHZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlHZIP3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMADF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMADF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMADF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMADF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYB44.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYB44.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYB44.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYB44.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYB70.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYB70.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYB70.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYB70.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYB91.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYB91.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYB91.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYB91.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlMYBL4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlMYBL4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlNAM5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlNAM5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlTCP12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlTCP12.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlTCP12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlTCP12.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlTCP15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlTCP15.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlTCP15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlTCP15.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlTCP18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlTCP18.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlTCP18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlTCP18.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWOX14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWOX14.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWOX14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWOX14.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY11.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY11.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY23.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY23.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY40.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY40.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY40.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY40.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY41.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY41.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY41.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY41.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY81.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY81.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlWRKY81.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlWRKY81.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlYABBY2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlYABBY2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlYABBY2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlYABBY2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZF6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZF6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZFCL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZFCL3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZFCL3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZFCL3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP3.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP3.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP5.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP5.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlZIP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlZIP7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlbHLH014.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlbHLH014.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlbHLH014.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlbHLH014.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlbHLH138.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlbHLH138.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlbHLH138.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlbHLH138.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlbHLH147.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlbHLH147.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SlbHLH147.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SlbHLH147.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA4a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA4a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA4a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA4a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA6b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA6b.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA6b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA6b.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA7.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfA7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfA7.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfB1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfB1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfB1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfB2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfB2a.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfB2a.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfB2a.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfB2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfB2b.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfB2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfB2b.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfC1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfC1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-SolycHsfC1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-SolycHsfC1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-TDR4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-TDR4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-TDR4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-TDR4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-TM29.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-TM29.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-TM29.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-TM29.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-VAHOX1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-VAHOX1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-VAHOX1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-VAHOX1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-cip2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-cip2b.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-cip2b.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-cip2b.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-gras6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-gras6.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Red-gras6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes Red-gras6.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue