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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-LeZIP2.PE.a.bam -c Red-HALO.PE.a.bam -n Red-LeZIP2.PE.a.MACS-2.1.0 -g 781666411 -f BAM
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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlDRP1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlDRP1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlERF1a-1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlERF1a-1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlGT2.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlGT2.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlHB1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlHB1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlHZIP2.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlHZIP2.PE.a.MACS-2.1.0 -g 781666411 -f BAM
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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMADF1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMADF1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYB44.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYB44.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYB70.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYB70.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYB91.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYB91.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYBL1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYBL1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYBL2.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYBL2.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYBL3.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYBL3.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlMYBL4.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlMYBL4.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlNAM1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlNAM1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlNAM2.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlNAM2.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlNAM3.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlNAM3.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlNAM4.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlNAM4.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlNAM5.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlNAM5.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlTCP12.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlTCP12.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlTCP15.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlTCP15.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlTCP18.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlTCP18.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlWOX14.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlWOX14.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlWRKY11.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlWRKY11.PE.a.MACS-2.1.0 -g 781666411 -f BAM
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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZF3.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZF3.PE.a.MACS-2.1.0 -g 781666411 -f BAM
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/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZFCL3.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZFCL3.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZIP1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZIP1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZIP3.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZIP3.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZIP5.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZIP5.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZIP6.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZIP6.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SlZIP7.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SlZIP7.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfA2.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfA2.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfA4a.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfA4a.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfA6b.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfA6b.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfA7.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfA7.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfB1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfB1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfB2a.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfB2a.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfB2b.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfB2b.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-SolycHsfC1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-SolycHsfC1.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-TDR4.PE.a.bam -c Red-HALO.PE.a.bam -n Red-TDR4.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-TM29.PE.a.bam -c Red-HALO.PE.a.bam -n Red-TM29.PE.a.MACS-2.1.0 -g 781666411 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Red-VAHOX1.PE.a.bam -c Red-HALO.PE.a.bam -n Red-VAHOX1.PE.a.MACS-2.1.0 -g 781666411 -f BAM