python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-APETALA2a.1x36mers.unique.bam SAMstats-Green-APETALA2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-ARF4.1x36mers.unique.bam SAMstats-Green-ARF4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-BES1_BZR1hp2.1x36mers.unique.bam SAMstats-Green-BES1_BZR1hp2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-BHLH1.1x36mers.unique.bam SAMstats-Green-BHLH1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-CBF2.1x36mers.unique.bam SAMstats-Green-CBF2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-CIP2a.1x36mers.unique.bam SAMstats-Green-CIP2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-CNR.1x36mers.unique.bam SAMstats-Green-CNR.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-CZFP1.1x36mers.unique.bam SAMstats-Green-CZFP1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-DREB3.1x36mers.unique.bam SAMstats-Green-DREB3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Dof4.1x36mers.unique.bam SAMstats-Green-Dof4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-EIL1.1x36mers.unique.bam SAMstats-Green-EIL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-EIL2.1x36mers.unique.bam SAMstats-Green-EIL2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-EIL3.1x36mers.unique.bam SAMstats-Green-EIL3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-EIL4.1x36mers.unique.bam SAMstats-Green-EIL4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-ERF10.1x36mers.unique.bam SAMstats-Green-ERF10.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-ERF9.1x36mers.unique.bam SAMstats-Green-ERF9.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-GRAS10.1x36mers.unique.bam SAMstats-Green-GRAS10.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-GRAS12.1x36mers.unique.bam SAMstats-Green-GRAS12.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-GRAS4.1x36mers.unique.bam SAMstats-Green-GRAS4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-HALO.1x36mers.unique.bam SAMstats-Green-HALO.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-JERF1.1x36mers.unique.bam SAMstats-Green-JERF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LAT61.1x36mers.unique.bam SAMstats-Green-LAT61.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LES1.1x36mers.unique.bam SAMstats-Green-LES1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LOB1.1x36mers.unique.bam SAMstats-Green-LOB1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LOB38.1x36mers.unique.bam SAMstats-Green-LOB38.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LOB42.1x36mers.unique.bam SAMstats-Green-LOB42.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LSD1.1x36mers.unique.bam SAMstats-Green-LSD1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LeT12.1x36mers.unique.bam SAMstats-Green-LeT12.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-LeZIP2.1x36mers.unique.bam SAMstats-Green-LeZIP2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-MADS-MC.1x36mers.unique.bam SAMstats-Green-MADS-MC.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-MADS-RIN.1x36mers.unique.bam SAMstats-Green-MADS-RIN.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-MADS1.1x36mers.unique.bam SAMstats-Green-MADS1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-MBD5.1x36mers.unique.bam SAMstats-Green-MBD5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-MBP7.1x36mers.unique.bam SAMstats-Green-MBP7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-NAC-NOR.1x36mers.unique.bam SAMstats-Green-NAC-NOR.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-NAC6.1x36mers.unique.bam SAMstats-Green-NAC6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-NF-YB-3.1x36mers.unique.bam SAMstats-Green-NF-YB-3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-PTI4.1x36mers.unique.bam SAMstats-Green-PTI4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SCL32-like.1x36mers.unique.bam SAMstats-Green-SCL32-like.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SEPALLATA3.1x36mers.unique.bam SAMstats-Green-SEPALLATA3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_C_4.1x36mers.unique.bam SAMstats-Green-Sl-ERF_C_4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_C_6.1x36mers.unique.bam SAMstats-Green-Sl-ERF_C_6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_E_4.1x36mers.unique.bam SAMstats-Green-Sl-ERF_E_4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_F_2.1x36mers.unique.bam SAMstats-Green-Sl-ERF_F_2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_F_3.1x36mers.unique.bam SAMstats-Green-Sl-ERF_F_3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_F_4.1x36mers.unique.bam SAMstats-Green-Sl-ERF_F_4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-Sl-ERF_F_5.1x36mers.unique.bam SAMstats-Green-Sl-ERF_F_5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlBEL1.1x36mers.unique.bam SAMstats-Green-SlBEL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlC3H11.1x36mers.unique.bam SAMstats-Green-SlC3H11.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlC3H48.1x36mers.unique.bam SAMstats-Green-SlC3H48.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlCOL1.1x36mers.unique.bam SAMstats-Green-SlCOL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlDRP1.1x36mers.unique.bam SAMstats-Green-SlDRP1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlDof14.1x36mers.unique.bam SAMstats-Green-SlDof14.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF1.1x36mers.unique.bam SAMstats-Green-SlERF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF1a-1.1x36mers.unique.bam SAMstats-Green-SlERF1a-1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF1a-2.1x36mers.unique.bam SAMstats-Green-SlERF1a-2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF36.1x36mers.unique.bam SAMstats-Green-SlERF36.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF4-1.1x36mers.unique.bam SAMstats-Green-SlERF4-1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF4-2.1x36mers.unique.bam SAMstats-Green-SlERF4-2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF5.1x36mers.unique.bam SAMstats-Green-SlERF5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlERF5-2.1x36mers.unique.bam SAMstats-Green-SlERF5-2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlGABL2.1x36mers.unique.bam SAMstats-Green-SlGABL2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlGABL4.1x36mers.unique.bam SAMstats-Green-SlGABL4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlGATA9_1.1x36mers.unique.bam SAMstats-Green-SlGATA9_1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlGATA9_2.1x36mers.unique.bam SAMstats-Green-SlGATA9_2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlGRAS3.1x36mers.unique.bam SAMstats-Green-SlGRAS3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlGT2.1x36mers.unique.bam SAMstats-Green-SlGT2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlHB1.1x36mers.unique.bam SAMstats-Green-SlHB1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlHZIP2.1x36mers.unique.bam SAMstats-Green-SlHZIP2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlHZIP3.1x36mers.unique.bam SAMstats-Green-SlHZIP3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMADF1.1x36mers.unique.bam SAMstats-Green-SlMADF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYB44.1x36mers.unique.bam SAMstats-Green-SlMYB44.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYB70.1x36mers.unique.bam SAMstats-Green-SlMYB70.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYB91.1x36mers.unique.bam SAMstats-Green-SlMYB91.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYBL1.1x36mers.unique.bam SAMstats-Green-SlMYBL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYBL2.1x36mers.unique.bam SAMstats-Green-SlMYBL2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYBL3.1x36mers.unique.bam SAMstats-Green-SlMYBL3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlMYBL4.1x36mers.unique.bam SAMstats-Green-SlMYBL4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlNAM1.1x36mers.unique.bam SAMstats-Green-SlNAM1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlNAM2.1x36mers.unique.bam SAMstats-Green-SlNAM2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlNAM3.1x36mers.unique.bam SAMstats-Green-SlNAM3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlNAM4.1x36mers.unique.bam SAMstats-Green-SlNAM4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlNAM5.1x36mers.unique.bam SAMstats-Green-SlNAM5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlTCP12.1x36mers.unique.bam SAMstats-Green-SlTCP12.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlTCP15.1x36mers.unique.bam SAMstats-Green-SlTCP15.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlTCP18.1x36mers.unique.bam SAMstats-Green-SlTCP18.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWOX14.1x36mers.unique.bam SAMstats-Green-SlWOX14.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY11.1x36mers.unique.bam SAMstats-Green-SlWRKY11.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY23.1x36mers.unique.bam SAMstats-Green-SlWRKY23.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY40.1x36mers.unique.bam SAMstats-Green-SlWRKY40.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY41.1x36mers.unique.bam SAMstats-Green-SlWRKY41.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY6.1x36mers.unique.bam SAMstats-Green-SlWRKY6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY7.1x36mers.unique.bam SAMstats-Green-SlWRKY7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlWRKY81.1x36mers.unique.bam SAMstats-Green-SlWRKY81.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlYABBY2a.1x36mers.unique.bam SAMstats-Green-SlYABBY2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZF1.1x36mers.unique.bam SAMstats-Green-SlZF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZF2.1x36mers.unique.bam SAMstats-Green-SlZF2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZF3.1x36mers.unique.bam SAMstats-Green-SlZF3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZF6.1x36mers.unique.bam SAMstats-Green-SlZF6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZFCL3.1x36mers.unique.bam SAMstats-Green-SlZFCL3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZIP1.1x36mers.unique.bam SAMstats-Green-SlZIP1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZIP3.1x36mers.unique.bam SAMstats-Green-SlZIP3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZIP4.1x36mers.unique.bam SAMstats-Green-SlZIP4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZIP5.1x36mers.unique.bam SAMstats-Green-SlZIP5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZIP6.1x36mers.unique.bam SAMstats-Green-SlZIP6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlZIP7.1x36mers.unique.bam SAMstats-Green-SlZIP7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlbHLH014.1x36mers.unique.bam SAMstats-Green-SlbHLH014.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlbHLH138.1x36mers.unique.bam SAMstats-Green-SlbHLH138.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SlbHLH147.1x36mers.unique.bam SAMstats-Green-SlbHLH147.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfA2.1x36mers.unique.bam SAMstats-Green-SolycHsfA2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfA4a.1x36mers.unique.bam SAMstats-Green-SolycHsfA4a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfA6b.1x36mers.unique.bam SAMstats-Green-SolycHsfA6b.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfA7.1x36mers.unique.bam SAMstats-Green-SolycHsfA7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfB1.1x36mers.unique.bam SAMstats-Green-SolycHsfB1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfB2a.1x36mers.unique.bam SAMstats-Green-SolycHsfB2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfB2b.1x36mers.unique.bam SAMstats-Green-SolycHsfB2b.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-SolycHsfC1.1x36mers.unique.bam SAMstats-Green-SolycHsfC1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-TDR4.1x36mers.unique.bam SAMstats-Green-TDR4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-TM29.1x36mers.unique.bam SAMstats-Green-TM29.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-VAHOX1.1x36mers.unique.bam SAMstats-Green-VAHOX1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-cip2b.1x36mers.unique.bam SAMstats-Green-cip2b.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Green-gras6.1x36mers.unique.bam SAMstats-Green-gras6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-DAP_100_C.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-DAP_100_C.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-DAP_150_D.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-DAP_150_D.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-DAP_300_D.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-DAP_300_D.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-DAP_50_D.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-DAP_50_D.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-ampDAP_100_A.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-ampDAP_100_A.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-ampDAP_150_A.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-ampDAP_150_A.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-ampDAP_300_A.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-ampDAP_300_A.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Green-ampDAP_50_A.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Green-ampDAP_50_A.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Red-DAP_100_E.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Red-DAP_100_E.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Red-DAP_150_G.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Red-DAP_150_G.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Red-DAP_300_G.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Red-DAP_300_G.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HALO-Red-DAP_50_G.end2.fastq.gz.1x36mers.unique.bam SAMstats-HALO-Red-DAP_50_G.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-DAP_100_D.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-DAP_100_D.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-DAP_150_E.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-DAP_150_E.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-DAP_300_E.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-DAP_300_E.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-DAP_50_E.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-DAP_50_E.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-ampDAP_100_B.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-ampDAP_100_B.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-ampDAP_150_B.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-ampDAP_150_B.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-ampDAP_300_B.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-ampDAP_300_B.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Green-ampDAP_50_B.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Green-ampDAP_50_B.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Red-DAP_100_F.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Red-DAP_100_F.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Red-DAP_150_H.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Red-DAP_150_H.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Red-DAP_300_H.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Red-DAP_300_H.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MBD5-Red-DAP_50_H.end2.fastq.gz.1x36mers.unique.bam SAMstats-MBD5-Red-DAP_50_H.end2.fastq.gz.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-APETALA2a.1x36mers.unique.bam SAMstats-Red-APETALA2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-ARF4.1x36mers.unique.bam SAMstats-Red-ARF4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-BES1_BZR1hp2.1x36mers.unique.bam SAMstats-Red-BES1_BZR1hp2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-BHLH1.1x36mers.unique.bam SAMstats-Red-BHLH1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-CBF2.1x36mers.unique.bam SAMstats-Red-CBF2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-CIP2a.1x36mers.unique.bam SAMstats-Red-CIP2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-CNR.1x36mers.unique.bam SAMstats-Red-CNR.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-CZFP1.1x36mers.unique.bam SAMstats-Red-CZFP1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-DREB3.1x36mers.unique.bam SAMstats-Red-DREB3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Dof4.1x36mers.unique.bam SAMstats-Red-Dof4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-EIL1.1x36mers.unique.bam SAMstats-Red-EIL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-EIL2.1x36mers.unique.bam SAMstats-Red-EIL2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-EIL3.1x36mers.unique.bam SAMstats-Red-EIL3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-EIL4.1x36mers.unique.bam SAMstats-Red-EIL4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-ERF10.1x36mers.unique.bam SAMstats-Red-ERF10.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-ERF9.1x36mers.unique.bam SAMstats-Red-ERF9.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-GRAS10.1x36mers.unique.bam SAMstats-Red-GRAS10.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-GRAS12.1x36mers.unique.bam SAMstats-Red-GRAS12.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-GRAS4.1x36mers.unique.bam SAMstats-Red-GRAS4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-HALO.1x36mers.unique.bam SAMstats-Red-HALO.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-JERF1.1x36mers.unique.bam SAMstats-Red-JERF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LAT61.1x36mers.unique.bam SAMstats-Red-LAT61.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LES1.1x36mers.unique.bam SAMstats-Red-LES1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LOB1.1x36mers.unique.bam SAMstats-Red-LOB1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LOB38.1x36mers.unique.bam SAMstats-Red-LOB38.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LOB42.1x36mers.unique.bam SAMstats-Red-LOB42.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LSD1.1x36mers.unique.bam SAMstats-Red-LSD1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LeT12.1x36mers.unique.bam SAMstats-Red-LeT12.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-LeZIP2.1x36mers.unique.bam SAMstats-Red-LeZIP2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-MADS-MC.1x36mers.unique.bam SAMstats-Red-MADS-MC.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-MADS-RIN.1x36mers.unique.bam SAMstats-Red-MADS-RIN.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-MADS1.1x36mers.unique.bam SAMstats-Red-MADS1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-MBD5.1x36mers.unique.bam SAMstats-Red-MBD5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-MBP7.1x36mers.unique.bam SAMstats-Red-MBP7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-NAC-NOR.1x36mers.unique.bam SAMstats-Red-NAC-NOR.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-NAC6.1x36mers.unique.bam SAMstats-Red-NAC6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-NF-YB-3.1x36mers.unique.bam SAMstats-Red-NF-YB-3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-PTI4.1x36mers.unique.bam SAMstats-Red-PTI4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SCL32-like.1x36mers.unique.bam SAMstats-Red-SCL32-like.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SEPALLATA3.1x36mers.unique.bam SAMstats-Red-SEPALLATA3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_C_4.1x36mers.unique.bam SAMstats-Red-Sl-ERF_C_4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_C_6.1x36mers.unique.bam SAMstats-Red-Sl-ERF_C_6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_E_4.1x36mers.unique.bam SAMstats-Red-Sl-ERF_E_4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_F_2.1x36mers.unique.bam SAMstats-Red-Sl-ERF_F_2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_F_3.1x36mers.unique.bam SAMstats-Red-Sl-ERF_F_3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_F_4.1x36mers.unique.bam SAMstats-Red-Sl-ERF_F_4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-Sl-ERF_F_5.1x36mers.unique.bam SAMstats-Red-Sl-ERF_F_5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlBEL1.1x36mers.unique.bam SAMstats-Red-SlBEL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlC3H11.1x36mers.unique.bam SAMstats-Red-SlC3H11.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlC3H48.1x36mers.unique.bam SAMstats-Red-SlC3H48.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlCOL1.1x36mers.unique.bam SAMstats-Red-SlCOL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlDRP1.1x36mers.unique.bam SAMstats-Red-SlDRP1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlDof14.1x36mers.unique.bam SAMstats-Red-SlDof14.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF1.1x36mers.unique.bam SAMstats-Red-SlERF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF1a-1.1x36mers.unique.bam SAMstats-Red-SlERF1a-1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF1a-2.1x36mers.unique.bam SAMstats-Red-SlERF1a-2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF36.1x36mers.unique.bam SAMstats-Red-SlERF36.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF4-1.1x36mers.unique.bam SAMstats-Red-SlERF4-1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF4-2.1x36mers.unique.bam SAMstats-Red-SlERF4-2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlERF5.1x36mers.unique.bam SAMstats-Red-SlERF5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlGABL2.1x36mers.unique.bam SAMstats-Red-SlGABL2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlGABL4.1x36mers.unique.bam SAMstats-Red-SlGABL4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlGATA9_1.1x36mers.unique.bam SAMstats-Red-SlGATA9_1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlGATA9_2.1x36mers.unique.bam SAMstats-Red-SlGATA9_2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlGRAS3.1x36mers.unique.bam SAMstats-Red-SlGRAS3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlGT2.1x36mers.unique.bam SAMstats-Red-SlGT2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlHB1.1x36mers.unique.bam SAMstats-Red-SlHB1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlHZIP2.1x36mers.unique.bam SAMstats-Red-SlHZIP2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlHZIP3.1x36mers.unique.bam SAMstats-Red-SlHZIP3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMADF1.1x36mers.unique.bam SAMstats-Red-SlMADF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYB44.1x36mers.unique.bam SAMstats-Red-SlMYB44.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYB70.1x36mers.unique.bam SAMstats-Red-SlMYB70.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYB91.1x36mers.unique.bam SAMstats-Red-SlMYB91.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYBL1.1x36mers.unique.bam SAMstats-Red-SlMYBL1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYBL2.1x36mers.unique.bam SAMstats-Red-SlMYBL2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYBL3.1x36mers.unique.bam SAMstats-Red-SlMYBL3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlMYBL4.1x36mers.unique.bam SAMstats-Red-SlMYBL4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlNAM1.1x36mers.unique.bam SAMstats-Red-SlNAM1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlNAM2.1x36mers.unique.bam SAMstats-Red-SlNAM2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlNAM3.1x36mers.unique.bam SAMstats-Red-SlNAM3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlNAM4.1x36mers.unique.bam SAMstats-Red-SlNAM4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlNAM5.1x36mers.unique.bam SAMstats-Red-SlNAM5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlTCP12.1x36mers.unique.bam SAMstats-Red-SlTCP12.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlTCP15.1x36mers.unique.bam SAMstats-Red-SlTCP15.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlTCP18.1x36mers.unique.bam SAMstats-Red-SlTCP18.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWOX14.1x36mers.unique.bam SAMstats-Red-SlWOX14.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY11.1x36mers.unique.bam SAMstats-Red-SlWRKY11.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY23.1x36mers.unique.bam SAMstats-Red-SlWRKY23.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY40.1x36mers.unique.bam SAMstats-Red-SlWRKY40.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY41.1x36mers.unique.bam SAMstats-Red-SlWRKY41.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY6.1x36mers.unique.bam SAMstats-Red-SlWRKY6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY7.1x36mers.unique.bam SAMstats-Red-SlWRKY7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlWRKY81.1x36mers.unique.bam SAMstats-Red-SlWRKY81.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlYABBY2a.1x36mers.unique.bam SAMstats-Red-SlYABBY2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZF1.1x36mers.unique.bam SAMstats-Red-SlZF1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZF2.1x36mers.unique.bam SAMstats-Red-SlZF2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZF3.1x36mers.unique.bam SAMstats-Red-SlZF3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZF6.1x36mers.unique.bam SAMstats-Red-SlZF6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZFCL3.1x36mers.unique.bam SAMstats-Red-SlZFCL3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZIP1.1x36mers.unique.bam SAMstats-Red-SlZIP1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZIP3.1x36mers.unique.bam SAMstats-Red-SlZIP3.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZIP5.1x36mers.unique.bam SAMstats-Red-SlZIP5.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZIP6.1x36mers.unique.bam SAMstats-Red-SlZIP6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlZIP7.1x36mers.unique.bam SAMstats-Red-SlZIP7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlbHLH014.1x36mers.unique.bam SAMstats-Red-SlbHLH014.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlbHLH138.1x36mers.unique.bam SAMstats-Red-SlbHLH138.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SlbHLH147.1x36mers.unique.bam SAMstats-Red-SlbHLH147.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfA2.1x36mers.unique.bam SAMstats-Red-SolycHsfA2.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfA4a.1x36mers.unique.bam SAMstats-Red-SolycHsfA4a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfA6b.1x36mers.unique.bam SAMstats-Red-SolycHsfA6b.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfA7.1x36mers.unique.bam SAMstats-Red-SolycHsfA7.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfB1.1x36mers.unique.bam SAMstats-Red-SolycHsfB1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfB2a.1x36mers.unique.bam SAMstats-Red-SolycHsfB2a.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfB2b.1x36mers.unique.bam SAMstats-Red-SolycHsfB2b.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-SolycHsfC1.1x36mers.unique.bam SAMstats-Red-SolycHsfC1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-TDR4.1x36mers.unique.bam SAMstats-Red-TDR4.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-TM29.1x36mers.unique.bam SAMstats-Red-TM29.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-VAHOX1.1x36mers.unique.bam SAMstats-Red-VAHOX1.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-cip2b.1x36mers.unique.bam SAMstats-Red-cip2b.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Red-gras6.1x36mers.unique.bam SAMstats-Red-gras6.1x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Solanum_lycopersicum/Solanum_lycopersicum.SL2.40.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired