python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- NAC61_rep1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes NAC61_rep1.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- NAC61_rep1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes NAC61_rep1.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- NAC61_rep2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes NAC61_rep2.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- NAC61_rep2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes NAC61_rep2.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- halo_nac_r1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes halo_nac_r1.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- halo_nac_r1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes halo_nac_r1.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- halo_nac_r2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes halo_nac_r2.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- halo_nac_r2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes halo_nac_r2.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -