python ~/code/bedRPKMfromBAM.py NAC61_rep1.SE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC61_rep1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes NAC61_rep1.SE.a.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py NAC61_rep2.SE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC61_rep2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes NAC61_rep2.SE.a.MACS-2.1.0_peaks.RPM -RPM