python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC61_rep1.SE.a.bam SAMstats-NAC61_rep1.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC61_rep2.SE.a.bam SAMstats-NAC61_rep2.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py halo_nac_r1.SE.a.bam SAMstats-halo_nac_r1.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py halo_nac_r2.SE.a.bam SAMstats-halo_nac_r2.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Vitis_vinifera-ASM3070453v1/Vitis_vinifera-ASM3070453v1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired