Rscript ~/code/spp/spp_package/run_spp.R -c=ChCUC1_halo_REP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChCUC1_halo_REP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChCUC1_halo_REP2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChCUC1_halo_REP2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ChCUC1_halo_REP3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ChCUC1_halo_REP3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=halo_REP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=halo_REP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=halo_REP2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=halo_REP2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=halo_REP3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=halo_REP3.1x36mers.QC