Rscript ~/code/spp/spp_package/run_spp.R -c=SPL11A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL11A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL11B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL11B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL12B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL12B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL13A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL13A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL13B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL13B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL13D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL13D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL14B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL14B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL15A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL15A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL15B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL15B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL15D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL15D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL16A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL16A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL16D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL16D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL18A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL18A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL18D2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL18D2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL19B_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL19B_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL19B_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL19B_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL1D_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL1D_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL1D_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL1D_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL2A_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL2A_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL2A_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL2A_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL2B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL2B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL2D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL2D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL3A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL3A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL3B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL3B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL3D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL3D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL4A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL4A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL4B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL4B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL4D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL4D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL5A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL5A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL5B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL5B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL5D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL5D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL6A_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL6A_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL6A_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL6A_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL6B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL6B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL6D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL6D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL7A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL7A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL7B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL7B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL7D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL7D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL8A_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL8A_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL8A_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL8A_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL8B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL8B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL8D1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL8D1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL9A_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL9A_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL9A_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL9A_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL9B.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL9B.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SPL9D.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SPL9D.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Ta-input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Ta-input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Ta-input2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Ta-input2.1x36mers.QC
