python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL11A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL11A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL11A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL11A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL11B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL11B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL11B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL11B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL12B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL12B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL12B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL12B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL13A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL13A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL13A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL13A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL13B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL13B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL13B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL13B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL13D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL13D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL13D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL13D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL14B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL14B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL14B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL14B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL15A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL15A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL15A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL15A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL15B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL15B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL15B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL15B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL15D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL15D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL15D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL15D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL16A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL16A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL16A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL16A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL16D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL16D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL16D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL16D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL18A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL18A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL18A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL18A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL18D2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL18D2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL18D2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL18D2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL19B_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL19B_rep1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL19B_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL19B_rep1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL19B_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL19B_rep2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL19B_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL19B_rep2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL1D_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL1D_rep1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL1D_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL1D_rep1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL1D_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL1D_rep2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL1D_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL1D_rep2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2A_rep1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2A_rep1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2A_rep2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2A_rep2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL2D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL2D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL3A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL3A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL3A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL3A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL3B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL3B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL3B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL3B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL3D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL3D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL3D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL3D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL4A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL4A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL4A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL4A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL4B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL4B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL4B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL4B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL4D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL4D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL4D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL4D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL5A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL5A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL5A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL5A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL5B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL5B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL5B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL5B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL5D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL5D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL5D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL5D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6A_rep1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6A_rep1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6A_rep2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6A_rep2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL6D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL6D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL7A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL7A.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL7A.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL7A.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL7B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL7B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL7B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL7B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL7D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL7D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL7D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL7D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8A_rep1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8A_rep1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8A_rep2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8A_rep2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8D1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8D1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL8D1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL8D1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9A_rep1.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9A_rep1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9A_rep1.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9A_rep2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9A_rep2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9A_rep2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9B.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9B.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9B.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9D.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- SPL9D.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes SPL9D.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ta-input.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes Ta-input.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ta-input.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes Ta-input.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ta-input2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes Ta-input2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Ta-input2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1/Triticum_aestivum-IWGSC_CS_RefSeq_v2.1.chrom.sizes Ta-input2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded - -absValue