Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-15.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-15.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-19.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-19.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-21.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-21.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-7.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-7.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-8.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-8.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-DREB-9.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-DREB-9.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-ERF-13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-ERF-13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-ERF-23.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-ERF-23.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AP2-RAV-26.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AP2-RAV-26.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=B3-10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=B3-10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C2C2-1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C2C2-1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C2C2-2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C2C2-2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C2C2-3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C2C2-3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C2C2-4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C2C2-4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C2C2-5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C2C2-5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C2H2-4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C2H2-4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C3H-1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C3H-1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C3H-2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C3H-2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C3H-5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C3H-5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GARP-G2-1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GARP-G2-1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GARP2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GARP2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GARP5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GARP5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GARP6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GARP6.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GRAS2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GRAS2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB-HD-ZIP-2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB-HD-ZIP-2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB-HD-ZIP-3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB-HD-ZIP-3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB-HD-ZIP-6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB-HD-ZIP-6.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Halo_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Halo_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Halo_rep2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Halo_rep2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Halo_rep3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Halo_rep3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LOB2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LOB2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LOB3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LOB3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LOB5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LOB5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB12.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB12.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB15.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB15.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB16.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB16.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB17.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB17.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB19.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB19.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB20.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB20.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB21.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB21.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB22.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB22.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB23.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB23.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB24.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB24.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB26.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB26.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB27.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB27.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB30.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB30.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB31.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB31.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB32.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB32.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB33.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB33.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB34.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB34.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB36.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB36.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB6.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC12.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC12.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC15.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC15.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC17.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC17.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC22.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC22.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC23.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC23.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC24.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC24.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC26.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC26.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC27.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC27.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC29.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC29.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC8.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC8.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NAC9.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NAC9.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NF-YC-1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NF-YC-1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SBP3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SBP3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Trihelix1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Trihelix1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY12.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY12.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY15.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY15.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY16.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY16.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY19.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY19.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY20.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY20.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY21.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY21.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY30.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY30.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY8.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY8.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ZFHD1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ZFHD1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ZFHD2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ZFHD2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH12.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH12.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH16.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH16.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bHLH7.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bHLH7.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP17.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP17.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP20.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP20.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP7.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP7.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=bZIP8.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=bZIP8.1x36mers.QC
