python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-14.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-14.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-15.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-15.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-18.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-18.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-19.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-19.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-19.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-19.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-21.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-21.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-21.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-21.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-7.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-7.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-8.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-8.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-9.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-9.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-DREB-9.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-9.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-ERF-13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-ERF-13.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-ERF-13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-ERF-13.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-ERF-23.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-ERF-23.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-ERF-23.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-ERF-23.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-RAV-26.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-RAV-26.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- AP2-RAV-26.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-RAV-26.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- B3-10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes B3-10.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- B3-10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes B3-10.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-3.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-3.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-4.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-4.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2C2-5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2H2-4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2H2-4.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C2H2-4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2H2-4.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C3H-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C3H-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C3H-2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C3H-2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C3H-5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- C3H-5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP-G2-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP-G2-1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP-G2-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP-G2-1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP6.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP6.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GARP6.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP6.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRAS2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GRAS2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- GRAS2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GRAS2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB-HD-ZIP-2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB-HD-ZIP-2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB-HD-ZIP-3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-3.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB-HD-ZIP-3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-3.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB-HD-ZIP-6.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-6.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HB-HD-ZIP-6.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-6.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HSF1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- HSF1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HSF1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Halo_rep1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Halo_rep1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Halo_rep1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Halo_rep1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Halo_rep2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Halo_rep2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Halo_rep2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Halo_rep2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Halo_rep3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Halo_rep3.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Halo_rep3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Halo_rep3.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOB2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOB2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOB3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB3.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOB3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB3.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOB5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LOB5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB11.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB11.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB12.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB12.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB13.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB13.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB14.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB14.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB15.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB15.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB16.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB16.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB17.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB17.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB18.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB18.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB19.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB19.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB19.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB19.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB20.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB20.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB20.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB20.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB21.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB21.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB21.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB21.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB22.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB22.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB22.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB22.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB23.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB23.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB23.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB23.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB24.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB24.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB24.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB24.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB26.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB26.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB26.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB26.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB27.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB27.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB27.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB27.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB30.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB30.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB30.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB30.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB31.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB31.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB31.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB31.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB32.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB32.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB32.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB32.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB33.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB33.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB33.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB33.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB34.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB34.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB34.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB34.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB36.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB36.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB36.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB36.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB6.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB6.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MYB6.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB6.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC10.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC10.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC11.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC11.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC12.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC12.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC13.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC13.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC14.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC14.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC15.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC15.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC17.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC17.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC18.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC18.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC22.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC22.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC22.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC22.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC23.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC23.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC23.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC23.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC24.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC24.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC24.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC24.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC26.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC26.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC26.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC26.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC27.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC27.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC27.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC27.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC29.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC29.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC29.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC29.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC4.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC4.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC8.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC8.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC9.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC9.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NAC9.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC9.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NF-YC-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NF-YC-1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- NF-YC-1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NF-YC-1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes SBP3.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- SBP3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes SBP3.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Trihelix1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Trihelix1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Trihelix1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Trihelix1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY10.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY10.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY11.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY11.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY12.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY12.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY13.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY13.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY14.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY14.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY15.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY15.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY15.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY16.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY16.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY18.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY18.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY19.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY19.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY19.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY19.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY20.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY20.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY20.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY20.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY21.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY21.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY21.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY21.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY30.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY30.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY30.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY30.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY8.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- WRKY8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY8.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZFHD1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes ZFHD1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZFHD1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes ZFHD1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZFHD2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes ZFHD2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ZFHD2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes ZFHD2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH10.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH10.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH11.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH11.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH12.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH12.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH12.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH13.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH13.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH13.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH14.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH14.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH16.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH16.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH7.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bHLH7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH7.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP10.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP10.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP11.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP11.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP11.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP17.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP17.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP17.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP20.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP20.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP20.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP20.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP3.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP3.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP3.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP4.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP4.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP5.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP5.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP5.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP7.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP7.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP8.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- bZIP8.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP8.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -