python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-14.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-14.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  9951286
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-15.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-15.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  9687882
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-18.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-18.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11321766
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-19.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-19.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-19.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  24255000
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  129078109
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-21.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-21.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-21.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  27483083
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-7.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-7.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  27603398
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-8.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-8.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-8.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  13229045
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-DREB-9.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-DREB-9.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-DREB-9.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  7304287
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-ERF-13.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-ERF-13.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-ERF-13.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  32757306
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-ERF-23.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-ERF-23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-ERF-23.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  36750944
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py AP2-RAV-26.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 AP2-RAV-26.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes AP2-RAV-26.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  29286257
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py B3-10.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 B3-10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes B3-10.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  3692383
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH10.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH10.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  44670716
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH11.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH11.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  18671930
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH12.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH12.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  3391979
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH13.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH13.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH13.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8569721
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH14.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH14.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  18636949
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH16.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH16.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH16.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  14596596
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  6712719
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  20638997
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bHLH7.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bHLH7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bHLH7.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  20435283
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP10.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP10.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  5141291
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP11.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP11.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  30129925
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP17.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP17.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP17.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8254776
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  37876244
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP20.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP20.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP20.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  47095904
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8990931
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP3.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP3.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  14031512
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP4.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP4.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  4681356
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  6870646
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP7.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP7.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP7.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11480366
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py bZIP8.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 bZIP8.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes bZIP8.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  24805801
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C2C2-1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C2C2-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11702423
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C2C2-2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C2C2-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12375801
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C2C2-3.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C2C2-3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-3.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11245278
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C2C2-4.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C2C2-4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-4.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  17416597
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C2C2-5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C2C2-5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2C2-5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  19232777
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C2H2-4.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C2H2-4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C2H2-4.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  48193857
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C3H-1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C3H-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  29899772
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C3H-2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C3H-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  6606180
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py C3H-5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 C3H-5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes C3H-5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  20723208
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py GARP2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 GARP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  42336798
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py GARP5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 GARP5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11186043
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py GARP6.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 GARP6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP6.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  46919172
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py GARP-G2-1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 GARP-G2-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GARP-G2-1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11062660
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py GRAS2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 GRAS2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes GRAS2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  39935252
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py HB-HD-ZIP-2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 HB-HD-ZIP-2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8835810
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py HB-HD-ZIP-3.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 HB-HD-ZIP-3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-3.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12583967
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py HB-HD-ZIP-6.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 HB-HD-ZIP-6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HB-HD-ZIP-6.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  39913713
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py HSF1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 HSF1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes HSF1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  28461491
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LOB2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 LOB2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  24154231
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LOB3.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 LOB3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB3.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  23493406
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LOB5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 LOB5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes LOB5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  35268401
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB11.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB11.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  5079224
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB12.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB12.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  85101159
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB13.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB13.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB13.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  23778532
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB14.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB14.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11100756
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB15.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB15.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  55346092
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB16.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB16.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB16.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  9204385
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB17.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB17.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB17.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  5209175
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB18.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB18.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11326477
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB19.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB19.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB19.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  22064818
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB20.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB20.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB20.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  5618374
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB21.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB21.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB21.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  26303724
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB22.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB22.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB22.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  25185312
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB23.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB23.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8038331
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB24.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB24.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB24.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  45571715
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB26.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB26.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB26.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  11082085
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB27.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB27.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB27.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  18480844
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  29648204
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB30.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB30.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB30.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12444537
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB31.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB31.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB31.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12940363
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB32.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB32.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB32.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8096495
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB33.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB33.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB33.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  13446096
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB34.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB34.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB34.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  16699922
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB36.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB36.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB36.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  17809571
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MYB6.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 MYB6.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes MYB6.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  10438841
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC10.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC10.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  46862869
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC11.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC11.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  7539280
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC12.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC12.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  63187175
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC13.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC13.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC13.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  87107709
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC14.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC14.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  34694163
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC15.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC15.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  26360375
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC17.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC17.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC17.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  70850282
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC18.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC18.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  25000185
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  24812614
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC22.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC22.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC22.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  42112847
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC23.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC23.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12309765
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC24.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC24.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC24.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  24663991
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC26.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC26.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC26.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  21538777
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC27.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC27.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC27.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  34568662
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC29.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC29.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC29.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  23066251
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  8027313
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC4.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC4.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  31544310
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC8.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC8.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC8.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  61013237
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NAC9.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NAC9.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NAC9.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12595997
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py NF-YC-1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 NF-YC-1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes NF-YC-1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  21088225
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py SBP3.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 SBP3.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes SBP3.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  12290320
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Trihelix1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 Trihelix1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes Trihelix1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  36825066
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY10.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY10.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY10.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  38571064
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY11.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY11.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY11.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  129727141
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY12.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY12.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY12.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  37552552
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY13.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY13.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY13.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  20954187
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY14.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY14.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY14.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  43569076
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY15.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY15.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY15.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  13445993
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY16.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY16.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY16.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  41005950
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY18.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY18.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY18.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  27099360
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY19.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY19.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY19.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  6010058
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY20.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY20.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY20.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  30528259
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY21.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY21.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY21.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  33929869
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY30.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY30.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY30.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  34749729
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY5.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY5.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY5.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  49672437
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py WRKY8.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 WRKY8.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes WRKY8.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  19111454
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ZFHD1.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 ZFHD1.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes ZFHD1.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  25091456
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ZFHD2.PE.a.MACS-2.1.0_peaks.narrowPeak.gz 0 ZFHD2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes ZFHD2.PE.a.MACS-2.1.0_peaks.RPM -RPM -totalReadNumber  40701946