python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-14.PE.a.bam SAMstats-AP2-14.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-15.PE.a.bam SAMstats-AP2-15.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-1.PE.a.bam SAMstats-AP2-DREB-1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-18.PE.a.bam SAMstats-AP2-DREB-18.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-19.PE.a.bam SAMstats-AP2-DREB-19.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-21.PE.a.bam SAMstats-AP2-DREB-21.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-7.PE.a.bam SAMstats-AP2-DREB-7.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-8.PE.a.bam SAMstats-AP2-DREB-8.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-DREB-9.PE.a.bam SAMstats-AP2-DREB-9.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-ERF-13.PE.a.bam SAMstats-AP2-ERF-13.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-ERF-23.PE.a.bam SAMstats-AP2-ERF-23.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py AP2-RAV-26.PE.a.bam SAMstats-AP2-RAV-26.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py B3-10.PE.a.bam SAMstats-B3-10.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C2C2-1.PE.a.bam SAMstats-C2C2-1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C2C2-2.PE.a.bam SAMstats-C2C2-2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C2C2-3.PE.a.bam SAMstats-C2C2-3.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C2C2-4.PE.a.bam SAMstats-C2C2-4.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C2C2-5.PE.a.bam SAMstats-C2C2-5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C2H2-4.PE.a.bam SAMstats-C2H2-4.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C3H-1.PE.a.bam SAMstats-C3H-1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C3H-2.PE.a.bam SAMstats-C3H-2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py C3H-5.PE.a.bam SAMstats-C3H-5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GARP-G2-1.PE.a.bam SAMstats-GARP-G2-1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GARP2.PE.a.bam SAMstats-GARP2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GARP5.PE.a.bam SAMstats-GARP5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GARP6.PE.a.bam SAMstats-GARP6.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py GRAS2.PE.a.bam SAMstats-GRAS2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HB-HD-ZIP-2.PE.a.bam SAMstats-HB-HD-ZIP-2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HB-HD-ZIP-3.PE.a.bam SAMstats-HB-HD-ZIP-3.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HB-HD-ZIP-6.PE.a.bam SAMstats-HB-HD-ZIP-6.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py HSF1.PE.a.bam SAMstats-HSF1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Halo_rep1.PE.a.bam SAMstats-Halo_rep1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Halo_rep2.PE.a.bam SAMstats-Halo_rep2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Halo_rep3.PE.a.bam SAMstats-Halo_rep3.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LOB2.PE.a.bam SAMstats-LOB2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LOB3.PE.a.bam SAMstats-LOB3.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LOB5.PE.a.bam SAMstats-LOB5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB11.PE.a.bam SAMstats-MYB11.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB12.PE.a.bam SAMstats-MYB12.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB13.PE.a.bam SAMstats-MYB13.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB14.PE.a.bam SAMstats-MYB14.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB15.PE.a.bam SAMstats-MYB15.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB16.PE.a.bam SAMstats-MYB16.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB17.PE.a.bam SAMstats-MYB17.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB18.PE.a.bam SAMstats-MYB18.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB19.PE.a.bam SAMstats-MYB19.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB2.PE.a.bam SAMstats-MYB2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB20.PE.a.bam SAMstats-MYB20.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB21.PE.a.bam SAMstats-MYB21.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB22.PE.a.bam SAMstats-MYB22.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB23.PE.a.bam SAMstats-MYB23.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB24.PE.a.bam SAMstats-MYB24.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB26.PE.a.bam SAMstats-MYB26.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB27.PE.a.bam SAMstats-MYB27.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB30.PE.a.bam SAMstats-MYB30.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB31.PE.a.bam SAMstats-MYB31.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB32.PE.a.bam SAMstats-MYB32.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB33.PE.a.bam SAMstats-MYB33.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB34.PE.a.bam SAMstats-MYB34.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB36.PE.a.bam SAMstats-MYB36.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MYB6.PE.a.bam SAMstats-MYB6.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC1.PE.a.bam SAMstats-NAC1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC10.PE.a.bam SAMstats-NAC10.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC11.PE.a.bam SAMstats-NAC11.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC12.PE.a.bam SAMstats-NAC12.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC13.PE.a.bam SAMstats-NAC13.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC14.PE.a.bam SAMstats-NAC14.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC15.PE.a.bam SAMstats-NAC15.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC17.PE.a.bam SAMstats-NAC17.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC18.PE.a.bam SAMstats-NAC18.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC2.PE.a.bam SAMstats-NAC2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC22.PE.a.bam SAMstats-NAC22.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC23.PE.a.bam SAMstats-NAC23.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC24.PE.a.bam SAMstats-NAC24.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC26.PE.a.bam SAMstats-NAC26.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC27.PE.a.bam SAMstats-NAC27.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC29.PE.a.bam SAMstats-NAC29.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC4.PE.a.bam SAMstats-NAC4.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC8.PE.a.bam SAMstats-NAC8.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NAC9.PE.a.bam SAMstats-NAC9.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py NF-YC-1.PE.a.bam SAMstats-NF-YC-1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SBP3.PE.a.bam SAMstats-SBP3.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Trihelix1.PE.a.bam SAMstats-Trihelix1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY10.PE.a.bam SAMstats-WRKY10.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY11.PE.a.bam SAMstats-WRKY11.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY12.PE.a.bam SAMstats-WRKY12.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY13.PE.a.bam SAMstats-WRKY13.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY14.PE.a.bam SAMstats-WRKY14.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY15.PE.a.bam SAMstats-WRKY15.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY16.PE.a.bam SAMstats-WRKY16.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY18.PE.a.bam SAMstats-WRKY18.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY19.PE.a.bam SAMstats-WRKY19.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY20.PE.a.bam SAMstats-WRKY20.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY21.PE.a.bam SAMstats-WRKY21.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY30.PE.a.bam SAMstats-WRKY30.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY5.PE.a.bam SAMstats-WRKY5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WRKY8.PE.a.bam SAMstats-WRKY8.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ZFHD1.PE.a.bam SAMstats-ZFHD1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ZFHD2.PE.a.bam SAMstats-ZFHD2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH10.PE.a.bam SAMstats-bHLH10.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH11.PE.a.bam SAMstats-bHLH11.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH12.PE.a.bam SAMstats-bHLH12.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH13.PE.a.bam SAMstats-bHLH13.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH14.PE.a.bam SAMstats-bHLH14.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH16.PE.a.bam SAMstats-bHLH16.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH2.PE.a.bam SAMstats-bHLH2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH5.PE.a.bam SAMstats-bHLH5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bHLH7.PE.a.bam SAMstats-bHLH7.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP1.PE.a.bam SAMstats-bZIP1.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP10.PE.a.bam SAMstats-bZIP10.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP11.PE.a.bam SAMstats-bZIP11.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP17.PE.a.bam SAMstats-bZIP17.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP2.PE.a.bam SAMstats-bZIP2.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP20.PE.a.bam SAMstats-bZIP20.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP3.PE.a.bam SAMstats-bZIP3.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP4.PE.a.bam SAMstats-bZIP4.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP5.PE.a.bam SAMstats-bZIP5.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP7.PE.a.bam SAMstats-bZIP7.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py bZIP8.PE.a.bam SAMstats-bZIP8.PE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Triticum_urartu-Tu2.1/Triticum_urartu-Tu2.1.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -noNHinfo