python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF10.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF10.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF10.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF14.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF14.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF14.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF16.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF16.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF16.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF18.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF18.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF18.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF25.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF25.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF25.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF25.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF27.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF27.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF27.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF27.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF29.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF29.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF29.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF29.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF34.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF34.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF34.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF34.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF36.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF36.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF36.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF36.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF39.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF39.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF39.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF39.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF4.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF4.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF4.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF7.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ARF7.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes ARF7.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- negative_control_GST-HALO.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes negative_control_GST-HALO.SE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- negative_control_GST-HALO.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes negative_control_GST-HALO.SE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -