python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF10.SE.a.bam SAMstats-ARF10.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF14.SE.a.bam SAMstats-ARF14.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF16.SE.a.bam SAMstats-ARF16.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF18.SE.a.bam SAMstats-ARF18.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF25.SE.a.bam SAMstats-ARF25.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF27.SE.a.bam SAMstats-ARF27.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF29.SE.a.bam SAMstats-ARF29.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF34.SE.a.bam SAMstats-ARF34.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF36.SE.a.bam SAMstats-ARF36.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF39.SE.a.bam SAMstats-ARF39.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF4.SE.a.bam SAMstats-ARF4.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ARF7.SE.a.bam SAMstats-ARF7.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py negative_control_GST-HALO.SE.a.bam SAMstats-negative_control_GST-HALO.SE.a -bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Glycine_max/Glycine_max.V1.0.19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired