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Rscript ~/code/spp/spp_package/run_spp.R -c=ARF13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF16.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF16.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF25.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF25.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF27.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF27.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF29.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF29.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF34.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF34.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF35.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF35.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF36.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF36.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF39.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF39.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ARF7.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ARF7.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BAD1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BAD1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP25.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP25.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP54.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP54.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP57_FEA4_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP57_FEA4_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP72.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP72.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP96.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP96.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB127.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB127.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB138.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB138.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB24_BBM_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB24_BBM_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB29.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB29.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB71_rep1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB71_rep1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LBD16_RA2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LBD16_RA2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LBD19_IG1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LBD19_IG1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LBD38.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LBD38.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=LBD5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=LBD5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SBP30_UB3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SBP30_UB3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SBP6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SBP6.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SBP8_UB2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SBP8_UB2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=control.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=control.1x36mers.QC