/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF10.SE.a.bam -c control.SE.a.bam -n ARF10.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF13.SE.a.bam -c control.SE.a.bam -n ARF13.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF14.SE.a.bam -c control.SE.a.bam -n ARF14.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF16.SE.a.bam -c control.SE.a.bam -n ARF16.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF18.SE.a.bam -c control.SE.a.bam -n ARF18.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF25.SE.a.bam -c control.SE.a.bam -n ARF25.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF27.SE.a.bam -c control.SE.a.bam -n ARF27.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF29.SE.a.bam -c control.SE.a.bam -n ARF29.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF34.SE.a.bam -c control.SE.a.bam -n ARF34.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF35.SE.a.bam -c control.SE.a.bam -n ARF35.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF36.SE.a.bam -c control.SE.a.bam -n ARF36.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF39.SE.a.bam -c control.SE.a.bam -n ARF39.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF4.SE.a.bam -c control.SE.a.bam -n ARF4.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t ARF7.SE.a.bam -c control.SE.a.bam -n ARF7.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BAD1.SE.a.bam -c control.SE.a.bam -n BAD1.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP25.SE.a.bam -c control.SE.a.bam -n BZIP25.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP54.SE.a.bam -c control.SE.a.bam -n BZIP54.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP57_FEA4_rep1.SE.a.bam -c control.SE.a.bam -n BZIP57_FEA4_rep1.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP72.SE.a.bam -c control.SE.a.bam -n BZIP72.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP96.SE.a.bam -c control.SE.a.bam -n BZIP96.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB127.SE.a.bam -c control.SE.a.bam -n EREB127.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB138.SE.a.bam -c control.SE.a.bam -n EREB138.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB24_BBM_rep1.SE.a.bam -c control.SE.a.bam -n EREB24_BBM_rep1.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB29.SE.a.bam -c control.SE.a.bam -n EREB29.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB71_rep1.SE.a.bam -c control.SE.a.bam -n EREB71_rep1.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LBD16_RA2.SE.a.bam -c control.SE.a.bam -n LBD16_RA2.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LBD19_IG1.SE.a.bam -c control.SE.a.bam -n LBD19_IG1.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LBD38.SE.a.bam -c control.SE.a.bam -n LBD38.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t LBD5.SE.a.bam -c control.SE.a.bam -n LBD5.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t SBP30_UB3.SE.a.bam -c control.SE.a.bam -n SBP30_UB3.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t SBP6.SE.a.bam -c control.SE.a.bam -n SBP6.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t SBP8_UB2.SE.a.bam -c control.SE.a.bam -n SBP8_UB2.SE.a.MACS-2.1.0 -g 2134373047 -f BAM
 