Rscript ~/code/spp/spp_package/run_spp.R -c=1d012427.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=1d012427.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=1d012968.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=1d012968.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=1d042933.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=1d042933.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ABI33.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ABI33.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=AY110782.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=AY110782.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BHLH156.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BHLH156.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP104.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP104.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP111.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP111.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP114.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP114.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP121.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP121.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP22.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP22.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP23.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP23.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP43.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP43.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP52.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP52.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP54.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP54.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP60.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP60.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP75.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP75.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP78.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP78.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP8.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP8.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZR1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZR1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=C3H11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=C3H11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=CPP10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=CPP10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DBF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DBF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DOF36.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DOF36.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB102.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB102.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB108.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB108.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB111.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB111.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB118.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB118.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB147.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB147.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB150.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB150.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB18.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB18.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB196.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB196.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB200.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB200.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB205.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB205.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB209.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB209.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB211.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB211.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB54.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB54.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB65.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB65.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB79.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB79.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB97.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB97.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GATA24.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GATA24.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GATA25.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GATA25.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GBF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GBF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=GLK44.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=GLK44.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB118.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB118.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB91.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB91.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB96.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB96.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HSFTF16.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HSFTF16.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HSFTF17.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HSFTF17.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HSFTF21.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HSFTF21.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MADS53.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MADS53.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MRP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MRP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB121.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB121.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB155.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB155.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB73.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB73.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB83.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB83.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR111.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR111.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR13.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR13.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR19.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR19.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR29.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR29.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR33.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR33.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR81.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR81.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR86.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR86.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR98.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR98.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF109.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF109.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF11.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF11.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF126.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF126.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF134.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF134.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF29.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF29.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF38.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF38.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF49.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF49.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF6.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF6.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF61.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF61.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF65.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF65.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF66.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF66.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF67.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF67.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF77.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF77.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NKD1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NKD1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NKD2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NKD2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NRP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NRP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=OCL1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=OCL1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=OCL5A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=OCL5A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=PBF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=PBF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SFB1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SFB1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=SMH1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=SMH1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=TCPTF40.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=TCPTF40.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=THX47.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=THX47.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY102.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY102.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY105.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY105.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY122.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY122.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY123.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY123.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY32.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY32.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY37.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY37.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY47.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY47.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY48.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY48.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY67.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY67.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY71.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY71.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY72.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY72.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY79.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY79.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY8.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY8.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY92.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY92.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY93.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY93.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY94.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY94.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ZAG2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ZAG2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ZIM10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ZIM10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ZIM34.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ZIM34.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=ZmOrphan110.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=ZmOrphan110.1x36mers.QC
