Rscript ~/code/spp/spp_package/run_spp.R -c=1d030858.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=1d030858.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BHLH164.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BHLH164.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP10.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP10.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP102.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP102.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP125.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP125.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP14.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP14.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP3.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP48.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP48.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP49.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP49.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP58.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP58.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP71.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP71.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=BZIP92.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=BZIP92.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DOF47.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DOF47.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB109.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB109.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB148.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB148.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB19.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB19.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB190.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB190.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB195.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB195.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB72.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB72.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB83.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB83.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=EREB84.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=EREB84.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB45.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB45.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB49.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB49.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HB98.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HB98.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HSFTF20.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HSFTF20.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HSFTF5.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HSFTF5.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB127.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB127.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB32.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB32.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYB35.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYB35.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR21.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR21.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR26.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR26.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR32.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR32.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR43.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR43.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYBR77.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYBR77.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MYC7.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MYC7.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF110.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF110.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF23.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF23.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF32.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF32.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NACTF4.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NACTF4.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=O2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=O2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=OHP1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=OHP1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=THX35.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=THX35.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=TU1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=TU1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WOX13A.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WOX13A.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=WRKY53.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=WRKY53.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=YY1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=YY1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=pUC57-Halo_repeat_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=pUC57-Halo_repeat_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=pUC57-Halo_repeat_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=pUC57-Halo_repeat_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=pUC57-Halo_repeat_3.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=pUC57-Halo_repeat_3.1x36mers.QC
