/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 1d030858.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n 1d030858.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BHLH164.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BHLH164.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP102.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP102.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP10.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP10.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP125.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP125.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP14.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP14.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP3.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP3.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP48.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP48.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP49.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP49.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP58.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP58.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP71.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP71.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t BZIP92.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n BZIP92.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DOF47.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n DOF47.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB109.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB109.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB148.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB148.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB190.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB190.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB195.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB195.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB19.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB19.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB72.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB72.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB83.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB83.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t EREB84.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n EREB84.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t HB45.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n HB45.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t HB49.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n HB49.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t HB98.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n HB98.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t HSFTF20.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n HSFTF20.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t HSFTF5.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n HSFTF5.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYB127.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYB127.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYB32.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYB32.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYB35.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYB35.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYBR21.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYBR21.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYBR26.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYBR26.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYBR32.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYBR32.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYBR43.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYBR43.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYBR77.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYBR77.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t MYC7.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n MYC7.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t NACTF110.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n NACTF110.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t NACTF23.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n NACTF23.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t NACTF32.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n NACTF32.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t NACTF4.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n NACTF4.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t O2.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n O2.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t OHP1.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n OHP1.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t THX35.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n THX35.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t TU1.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n TU1.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WOX13A.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n WOX13A.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WRKY53.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n WRKY53.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t YY1.PE.a.bam -c pUC57-Halo_repeat_1.PE.a.bam -n YY1.PE.a.MACS-2.1.0 -g 2134373047 -f BAMPE
 