Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_BAF60.21_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_BAF60.21_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_BSD8_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_BSD8_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_C3H42_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_C3H42_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_CAP5P9_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_CAP5P9_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_CPP8_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_CPP8_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_DOF23_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_DOF23_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_DOF3_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_DOF3_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_E2F19_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_E2F19_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_EREB122_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_EREB122_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_EREB156_Met_SE150_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_EREB156_Met_SE150_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_EREB7_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_EREB7_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_F1_Halo_deM_SE150.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_F1_Halo_deM_SE150.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_F1_Halo_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_F1_Halo_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_F1_P1_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_F1_P1_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_F1_gDNA_library_01.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_F1_gDNA_library_01.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_F1_gDNA_library_02.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_F1_gDNA_library_02.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_F1_gDNA_library_03.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_F1_gDNA_library_03.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_GBP20_Met_SE150.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_GBP20_Met_SE150.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_HSF24_Met_SE150_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_HSF24_Met_SE150_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_JMJ13_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_JMJ13_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_MBF1.3_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_MBF1.3_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_MYB100_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_MYB100_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_MYB40_Met_SE150_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_MYB40_Met_SE150_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_MYB53_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_MYB53_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_MYBR78_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_MYBR78_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_NAC102_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_NAC102_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_NLP14_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_NLP14_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_Orphan175_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_Orphan175_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_Orphan207_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_Orphan207_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_Orphan249_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_Orphan249_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_THX39_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_THX39_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_WRKY38_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_WRKY38_deM_SE50.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=DAP_bZIP76_deM_SE50.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=DAP_bZIP76_deM_SE50.1x36mers.QC