python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- C3H23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes C3H23.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- C3H23.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes C3H23.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- CPP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CPP2.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- CPP2.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes CPP2.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- OBF4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes OBF4.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- OBF4.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes OBF4.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- THX20.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX20.PE.a.5p.counts.plus.wig -notitle -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- THX20.PE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Zea_mays-B73_RefGen_v4/GCA_000005005.6_B73_RefGen_v4_genomic.chrom.sizes THX20.PE.a.5p.counts.minus.wig -notitle -uniqueBAM -stranded -