python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x36mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Chemical-GSM2183909.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Chemical-GSM2183909.2x50mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x36mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-H4-GSM2183910.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-H4-GSM2183910.2x50mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x36mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNase-WT-GSM2183911.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNase-WT-GSM2183911.2x50mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x36mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes Mnase-Partial_5U-GSM2183912.2x50mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr1.wig -notitle -RPM -uniqueBAM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -RPM -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr1.wig -notitle -uniqueBAM -stranded - -chr chr1 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr1.wig -notitle -uniqueBAM -stranded + -chr chr1 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr2.wig -notitle -RPM -uniqueBAM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -RPM -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr2.wig -notitle -uniqueBAM -stranded - -chr chr2 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr2.wig -notitle -uniqueBAM -stranded + -chr chr2 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr3.wig -notitle -RPM -uniqueBAM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -RPM -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr3.wig -notitle -uniqueBAM -stranded - -chr chr3 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr3.wig -notitle -uniqueBAM -stranded + -chr chr3 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr4.wig -notitle -RPM -uniqueBAM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -RPM -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr4.wig -notitle -uniqueBAM -stranded - -chr chr4 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr4.wig -notitle -uniqueBAM -stranded + -chr chr4 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr5.wig -notitle -RPM -uniqueBAM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -RPM -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr5.wig -notitle -uniqueBAM -stranded - -chr chr5 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr5.wig -notitle -uniqueBAM -stranded + -chr chr5 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr6.wig -notitle -RPM -uniqueBAM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -RPM -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr6.wig -notitle -uniqueBAM -stranded - -chr chr6 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr6.wig -notitle -uniqueBAM -stranded + -chr chr6 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr7.wig -notitle -RPM -uniqueBAM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -RPM -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr7.wig -notitle -uniqueBAM -stranded - -chr chr7 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr7.wig -notitle -uniqueBAM -stranded + -chr chr7 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr8.wig -notitle -RPM -uniqueBAM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -RPM -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr8.wig -notitle -uniqueBAM -stranded - -chr chr8 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr8.wig -notitle -uniqueBAM -stranded + -chr chr8 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr9.wig -notitle -RPM -uniqueBAM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -RPM -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr9.wig -notitle -uniqueBAM -stranded - -chr chr9 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr9.wig -notitle -uniqueBAM -stranded + -chr chr9 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr10.wig -notitle -RPM -uniqueBAM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -RPM -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr10.wig -notitle -uniqueBAM -stranded - -chr chr10 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr10.wig -notitle -uniqueBAM -stranded + -chr chr10 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr11.wig -notitle -RPM -uniqueBAM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -RPM -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr11.wig -notitle -uniqueBAM -stranded - -chr chr11 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr11.wig -notitle -uniqueBAM -stranded + -chr chr11 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr12.wig -notitle -RPM -uniqueBAM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -RPM -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr12.wig -notitle -uniqueBAM -stranded - -chr chr12 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr12.wig -notitle -uniqueBAM -stranded + -chr chr12 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr13.wig -notitle -RPM -uniqueBAM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -RPM -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr13.wig -notitle -uniqueBAM -stranded - -chr chr13 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr13.wig -notitle -uniqueBAM -stranded + -chr chr13 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr14.wig -notitle -RPM -uniqueBAM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -RPM -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr14.wig -notitle -uniqueBAM -stranded - -chr chr14 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr14.wig -notitle -uniqueBAM -stranded + -chr chr14 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr15.wig -notitle -RPM -uniqueBAM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -RPM -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr15.wig -notitle -uniqueBAM -stranded - -chr chr15 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr15.wig -notitle -uniqueBAM -stranded + -chr chr15 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr16.wig -notitle -RPM -uniqueBAM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -RPM -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr16.wig -notitle -uniqueBAM -stranded - -chr chr16 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr16.wig -notitle -uniqueBAM -stranded + -chr chr16 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr17.wig -notitle -RPM -uniqueBAM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -RPM -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr17.wig -notitle -uniqueBAM -stranded - -chr chr17 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr17.wig -notitle -uniqueBAM -stranded + -chr chr17 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr18.wig -notitle -RPM -uniqueBAM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -RPM -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr18.wig -notitle -uniqueBAM -stranded - -chr chr18 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr18.wig -notitle -uniqueBAM -stranded + -chr chr18 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chr19.wig -notitle -RPM -uniqueBAM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -RPM -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chr19.wig -notitle -uniqueBAM -stranded - -chr chr19 &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chr19.wig -notitle -uniqueBAM -stranded + -chr chr19 &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chrX.wig -notitle -RPM -uniqueBAM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -RPM -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chrX.wig -notitle -uniqueBAM -stranded - -chr chrX &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chrX.wig -notitle -uniqueBAM -stranded + -chr chrX &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chrY.wig -notitle -RPM -uniqueBAM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -RPM -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chrY.wig -notitle -uniqueBAM -stranded - -chr chrY &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chrY.wig -notitle -uniqueBAM -stranded + -chr chrY &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/makewigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.chrM.wig -notitle -RPM -uniqueBAM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x36mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.dedup.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.RPM.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -RPM -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.minus.5p.chrM.wig -notitle -uniqueBAM -stranded - -chr chrM &
python ~/code/make5primeWigglefromBAM-NH.py --- MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes MNAse-Partial_15U-GSM2183913.2x50mers.mm10.unique.counts.plus.5p.chrM.wig -notitle -uniqueBAM -stranded + -chr chrM &