## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[mouse_chipseq-Input_G1E_307H_R1.2x36mers.mm10.unique.bam] OUTPUT=mouse_chipseq-Input_G1E_307H_R1.2x36mers.mm10.unique.dedup.bam METRICS_FILE=mouse_chipseq-Input_G1E_307H_R1.2x36mers.mm10.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Jul 17 23:58:33 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	40516633	32536664	0	1679325	630935	0.041448	745365684

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015393
2.0	1.977064
3.0	2.887856
4.0	3.75046
5.0	4.567427
6.0	5.34117
7.0	6.073977
8.0	6.768014
9.0	7.42533
10.0	8.047871
11.0	8.637474
12.0	9.195883
13.0	9.724748
14.0	10.225633
15.0	10.700017
16.0	11.149303
17.0	11.574819
18.0	11.977822
19.0	12.359503
20.0	12.72099
21.0	13.063353
22.0	13.387602
23.0	13.694695
24.0	13.985542
25.0	14.261
26.0	14.521885
27.0	14.768967
28.0	15.002977
29.0	15.224606
30.0	15.434509
31.0	15.633307
32.0	15.821587
33.0	15.999906
34.0	16.168791
35.0	16.32874
36.0	16.480227
37.0	16.623699
38.0	16.75958
39.0	16.888272
40.0	17.010156
41.0	17.125591
42.0	17.234919
43.0	17.338462
44.0	17.436528
45.0	17.529405
46.0	17.617368
47.0	17.700677
48.0	17.779579
49.0	17.854306
50.0	17.925079
51.0	17.992109
52.0	18.055591
53.0	18.115716
54.0	18.172659
55.0	18.226589
56.0	18.277666
57.0	18.326041
58.0	18.371857
59.0	18.415248
60.0	18.456344
61.0	18.495265
62.0	18.532128
63.0	18.56704
64.0	18.600105
65.0	18.63142
66.0	18.661079
67.0	18.689168
68.0	18.715772
69.0	18.740968
70.0	18.764831
71.0	18.787431
72.0	18.808836
73.0	18.829108
74.0	18.848308
75.0	18.866491
76.0	18.883713
77.0	18.900024
78.0	18.915472
79.0	18.930102
80.0	18.943958
81.0	18.957082
82.0	18.96951
83.0	18.981282
84.0	18.99243
85.0	19.002989
86.0	19.012989
87.0	19.02246
88.0	19.03143
89.0	19.039926
90.0	19.047972
91.0	19.055592
92.0	19.062809
93.0	19.069644
94.0	19.076118
95.0	19.082249
96.0	19.088055
97.0	19.093555
98.0	19.098763
99.0	19.103696
100.0	19.108368