## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[human_cutandrun-CR_CD34-GATA1_WT_Day6-rep2_R1.2x25mers.hg38.unique.bam] OUTPUT=human_cutandrun-CR_CD34-GATA1_WT_Day6-rep2_R1.2x25mers.hg38.unique.dedup.bam METRICS_FILE=human_cutandrun-CR_CD34-GATA1_WT_Day6-rep2_R1.2x25mers.hg38.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Jul 17 23:59:25 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	37240268	19251334	0	6827201	6433750	0.183328	1195757111

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.205611
2.0	2.374254
3.0	3.507062
4.0	4.605134
5.0	5.669535
6.0	6.701298
7.0	7.701423
8.0	8.67088
9.0	9.61061
10.0	10.521525
11.0	11.404507
12.0	12.260414
13.0	13.090076
14.0	13.894297
15.0	14.673858
16.0	15.429515
17.0	16.162
18.0	16.872025
19.0	17.560277
20.0	18.227426
21.0	18.874117
22.0	19.500978
23.0	20.108617
24.0	20.697624
25.0	21.26857
26.0	21.822008
27.0	22.358476
28.0	22.878494
29.0	23.382566
30.0	23.871181
31.0	24.344814
32.0	24.803923
33.0	25.248954
34.0	25.680339
35.0	26.098496
36.0	26.503831
37.0	26.896737
38.0	27.277595
39.0	27.646774
40.0	28.004633
41.0	28.351519
42.0	28.687768
43.0	29.013706
44.0	29.32965
45.0	29.635906
46.0	29.932771
47.0	30.220532
48.0	30.49947
49.0	30.769855
50.0	31.031949
51.0	31.286006
52.0	31.532272
53.0	31.770988
54.0	32.002383
55.0	32.226683
56.0	32.444105
57.0	32.65486
58.0	32.859152
59.0	33.05718
60.0	33.249136
61.0	33.435206
62.0	33.61557
63.0	33.790404
64.0	33.959876
65.0	34.124152
66.0	34.283391
67.0	34.437747
68.0	34.587369
69.0	34.732404
70.0	34.872991
71.0	35.009267
72.0	35.141365
73.0	35.269412
74.0	35.393533
75.0	35.513847
76.0	35.630473
77.0	35.743522
78.0	35.853105
79.0	35.959327
80.0	36.062292
81.0	36.1621
82.0	36.258848
83.0	36.352629
84.0	36.443534
85.0	36.531652
86.0	36.617067
87.0	36.699864
88.0	36.780122
89.0	36.857918
90.0	36.93333
91.0	37.006428
92.0	37.077286
93.0	37.14597
94.0	37.212549
95.0	37.277085
96.0	37.339643
97.0	37.400283
98.0	37.459063
99.0	37.516041
100.0	37.571272