FastQCFastQC Report
Tue 13 Oct 2020
human_cutandrun-CR_CD34-GATA1_WT_Day6-rep2.2x25mers.hg38.unique.dedup.bam

Summary

[OK]Basic Statistics

MeasureValue
Filenamehuman_cutandrun-CR_CD34-GATA1_WT_Day6-rep2.2x25mers.hg38.unique.dedup.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80077468
Sequences flagged as poor quality0
Sequence length25
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)