INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='TAL1-G1E-ER4-3h-Rep1-GSM1689029-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.05657100677 s Creating peak regions... Creating peak regions took 41.7911880016 s Estimating background... Estimating background took 0.34321808815 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.14949798584 s Creating peak regions... Creating peak regions took 38.7059841156 s Estimating background... Estimating background took 0.438985824585 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.12128591537 s Creating peak regions... Creating peak regions took 37.3896598816 s Estimating background... Estimating background took 0.316788911819 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.11506390572 s Creating peak regions... Creating peak regions took 37.4648230076 s Estimating background... Estimating background took 0.339838027954 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.21802091599 s Creating peak regions... Creating peak regions took 38.9325430393 s Estimating background... Estimating background took 0.295703887939 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.02002310753 s Creating peak regions... Creating peak regions took 32.2942109108 s Estimating background... Estimating background took 0.290824890137 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.945926904678 s Creating peak regions... Creating peak regions took 30.2923400402 s Estimating background... Estimating background took 0.323532104492 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.962276935577 s Creating peak regions... Creating peak regions took 29.4503419399 s Estimating background... Estimating background took 0.302789926529 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.901443004608 s Creating peak regions... Creating peak regions took 28.113421917 s Estimating background... Estimating background took 0.184567213058 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.648888111115 s Creating peak regions... Creating peak regions took 18.9721899033 s Estimating background... Estimating background took 0.308984994888 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 2.39161610603 s Creating peak regions... Creating peak regions took 61.2235000134 s Estimating background... Estimating background took 0.449922084808 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0613899230957 s Creating peak regions... Creating peak regions took 0.21789598465 s Estimating background... Estimating background took 0.235771894455 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0360260009766 s Creating peak regions... Creating peak regions took 0.293081045151 s Estimating background... Estimating background took 0.207128047943 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0295569896698 s Creating peak regions... Creating peak regions took 0.191237926483 s Estimating background... Estimating background took 0.207232952118 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0254809856415 s Creating peak regions... Creating peak regions took 0.235469102859 s Estimating background... Estimating background took 0.236797094345 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 2.22917103767 s Creating peak regions... Creating peak regions took 56.8451631069 s Estimating background... Estimating background took 0.434741020203 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.44066810608 s Creating peak regions... Creating peak regions took 49.7250711918 s Estimating background... Estimating background took 0.347594976425 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.44800496101 s Creating peak regions... Creating peak regions took 48.926432848 s Estimating background... Estimating background took 0.335399866104 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0526330471039 s Creating peak regions... Creating peak regions took 0.0835618972778 s Estimating background... Estimating background took 0.234933137894 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.48402309418 s Creating peak regions... Creating peak regions took 47.4039359093 s Estimating background... Estimating background took 0.47000002861 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0255630016327 s Creating peak regions... Creating peak regions took 0.732169151306 s Estimating background... Estimating background took 0.208353996277 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.42048501968 s Creating peak regions... Creating peak regions took 46.7186131477 s Estimating background... Estimating background took 0.375306129456 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.72339391708 s Creating peak regions... Creating peak regions took 45.4557449818 s Estimating background... Estimating background took 0.444669961929 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.24398303032 s Creating peak regions... Creating peak regions took 40.1065289974 s Estimating background... Estimating background took 0.337177038193 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 1.47985100746 s Creating peak regions... Creating peak regions took 38.8963079453 s Estimating background... Estimating background took 0.440971851349 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0546810626984 s Creating peak regions... Creating peak regions took 0.0315999984741 s Estimating background... Estimating background took 0.208783149719 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0253629684448 s Creating peak regions... Creating peak regions took 0.0590250492096 s Estimating background... Estimating background took 0.208657026291 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.025239944458 s Creating peak regions... Creating peak regions took 0.0208780765533 s Estimating background... Estimating background took 0.233984947205 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0264649391174 s Creating peak regions... Creating peak regions took 0.0326538085938 s Estimating background... Estimating background took 0.235277891159 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0334749221802 s Creating peak regions... Creating peak regions took 0.0364551544189 s Estimating background... Estimating background took 0.236986160278 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0392799377441 s Creating peak regions... Creating peak regions took 0.0697038173676 s Estimating background... Estimating background took 0.236975908279 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0909879207611 s Creating peak regions... Creating peak regions took 0.0356729030609 s Estimating background... Estimating background took 0.284152984619 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0372378826141 s Creating peak regions... Creating peak regions took 0.0411410331726 s Estimating background... Estimating background took 0.240350008011 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0520970821381 s Creating peak regions... Creating peak regions took 0.0590641498566 s Estimating background... Estimating background took 0.23955988884 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0355560779572 s Creating peak regions... Creating peak regions took 0.0783698558807 s Estimating background... Estimating background took 0.240105867386 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0348618030548 s Creating peak regions... Creating peak regions took 0.0381481647491 s Estimating background... Estimating background took 0.238569021225 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0364789962769 s Creating peak regions... Creating peak regions took 0.0350849628448 s Estimating background... Estimating background took 0.239456176758 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0635509490967 s Creating peak regions... Creating peak regions took 0.203163862228 s Estimating background... Estimating background took 0.239492177963 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.696403026581 s Creating peak regions... Creating peak regions took 52.8001251221 s Estimating background... Estimating background took 0.300596952438 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0493311882019 s Creating peak regions... Creating peak regions took 0.466151952744 s Estimating background... Estimating background took 0.23107790947 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Reading data took 0.0350151062012 s Creating peak regions... Creating peak regions took 26.0720000267 s Estimating background... Estimating background took 0.248064994812 s Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam Reading in data...