INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='TAL1-G1E-ER4-0h-Rep5-GSM1689028-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.43789100647 s
Creating peak regions... Creating peak regions took 47.0740578175 s
Estimating background... Estimating background took 15.2687149048 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 3.01713991165 s
Creating peak regions... Creating peak regions took 42.111782074 s
Estimating background... Estimating background took 21.3869349957 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.45785212517 s
Creating peak regions... Creating peak regions took 41.7968978882 s
Estimating background... Estimating background took 14.5244288445 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.38719201088 s
Creating peak regions... Creating peak regions took 41.5628938675 s
Estimating background... Estimating background took 16.3502500057 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.52954697609 s
Creating peak regions... Creating peak regions took 42.9906380177 s
Estimating background... Estimating background took 15.7046539783 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.20021605492 s
Creating peak regions... Creating peak regions took 38.1699049473 s
Estimating background... Estimating background took 14.4601349831 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.07711005211 s
Creating peak regions... Creating peak regions took 33.5735089779 s
Estimating background... Estimating background took 12.3984200954 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 2.09092903137 s
Creating peak regions... Creating peak regions took 33.0439369678 s
Estimating background... Estimating background took 13.3997797966 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 1.76227903366 s
Creating peak regions... Creating peak regions took 33.1623051167 s
Estimating background... Estimating background took 11.2281830311 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 1.34070014954 s
Creating peak regions... Creating peak regions took 22.7623341084 s
Estimating background... Estimating background took 9.66514205933 s


Processing TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam
Reading in data... Reading data took 5.05190110207 s
Creating peak regions... Creating peak regions took 72.8485131264 s
Estimating background...