INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='TAL1-G1E-ER4-0h-Rep2-GSM1689026-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.459645986557 s Creating peak regions... Creating peak regions took 42.5457670689 s Estimating background... Estimating background took 0.241945028305 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.332783937454 s Creating peak regions... Creating peak regions took 38.0748159885 s Estimating background... Estimating background took 0.196398019791 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.307978868484 s Creating peak regions... Creating peak regions took 36.9384658337 s Estimating background... Estimating background took 0.189424037933 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.302165985107 s Creating peak regions... Creating peak regions took 39.0259671211 s Estimating background... Estimating background took 0.217886924744 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.343603134155 s Creating peak regions... Creating peak regions took 38.0164561272 s Estimating background... Estimating background took 0.198101997375 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.300121068954 s Creating peak regions... Creating peak regions took 30.7418079376 s Estimating background... Estimating background took 0.230604887009 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.261429071426 s Creating peak regions... Creating peak regions took 30.1671249866 s Estimating background... Estimating background took 0.237430095673 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.25420999527 s Creating peak regions... Creating peak regions took 27.7575769424 s Estimating background... Estimating background took 0.228672981262 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.23390007019 s Creating peak regions... Creating peak regions took 26.8463811874 s Estimating background... Estimating background took 0.206140995026 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.209149122238 s Creating peak regions... Creating peak regions took 18.2574238777 s Estimating background... Estimating background took 0.200335979462 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.680347919464 s Creating peak regions... Creating peak regions took 60.7629680634 s Estimating background... Estimating background took 0.257138967514 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0338590145111 s Creating peak regions... Creating peak regions took 0.16472196579 s Estimating background... Estimating background took 0.214507102966 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0221490859985 s Creating peak regions... Creating peak regions took 0.165486097336 s Estimating background... Estimating background took 0.230875968933 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0236020088196 s Creating peak regions... Creating peak regions took 0.15930390358 s Estimating background... Estimating background took 0.238703012466 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.020388841629 s Creating peak regions... Creating peak regions took 0.175630092621 s Estimating background... Estimating background took 0.231772899628 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.605289936066 s Creating peak regions... Creating peak regions took 55.8863971233 s Estimating background... Estimating background took 0.242400169373 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.39235496521 s Creating peak regions... Creating peak regions took 49.5293078423 s Estimating background... Estimating background took 0.276720046997 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.393550872803 s Creating peak regions... Creating peak regions took 47.9867870808 s Estimating background... Estimating background took 0.244112014771 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0304460525513 s Creating peak regions... Creating peak regions took 0.0832970142365 s Estimating background... Estimating background took 0.243067026138 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.417126893997 s Creating peak regions... Creating peak regions took 46.9081699848 s Estimating background... Estimating background took 0.261245012283 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.372153997421 s Creating peak regions... Creating peak regions took 44.4775431156 s Estimating background... Estimating background took 0.265424966812 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.472588062286 s Creating peak regions... Creating peak regions took 43.2420899868 s Estimating background... Estimating background took 0.280465126038 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.329413175583 s Creating peak regions... Creating peak regions took 39.8518400192 s Estimating background... Estimating background took 0.241133928299 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.391955852509 s Creating peak regions... Creating peak regions took 37.0352799892 s Estimating background... Estimating background took 0.237183094025 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.030825138092 s Creating peak regions... Creating peak regions took 0.0240380764008 s Estimating background... Estimating background took 0.236998081207 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.024759054184 s Creating peak regions... Creating peak regions took 0.0142660140991 s Estimating background... Estimating background took 0.243641853333 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0205399990082 s Creating peak regions... Creating peak regions took 0.0373959541321 s Estimating background... Estimating background took 0.248536109924 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0212030410767 s Creating peak regions... Creating peak regions took 0.0299439430237 s Estimating background... Estimating background took 0.249670982361 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0227630138397 s Creating peak regions... Creating peak regions took 0.0562059879303 s Estimating background... Estimating background took 0.239860057831 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0348589420319 s Creating peak regions... Creating peak regions took 0.0369911193848 s Estimating background... Estimating background took 0.248450994492 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.027027130127 s Creating peak regions... Creating peak regions took 0.0380668640137 s Estimating background... Estimating background took 0.249096870422 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0298991203308 s Creating peak regions... Creating peak regions took 0.039717912674 s Estimating background... Estimating background took 0.247159957886 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0259640216827 s Creating peak regions... Creating peak regions took 0.0830991268158 s Estimating background... Estimating background took 0.24991106987 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0220289230347 s Creating peak regions... Creating peak regions took 0.0340571403503 s Estimating background... Estimating background took 0.247303009033 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0332779884338 s Creating peak regions... Creating peak regions took 0.170772075653 s Estimating background... Estimating background took 0.250112056732 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.192159175873 s Creating peak regions... Creating peak regions took 50.4843649864 s Estimating background... Estimating background took 0.267626047134 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0306189060211 s Creating peak regions... Creating peak regions took 0.336620092392 s Estimating background... Estimating background took 0.244600057602 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Reading data took 0.0255839824677 s Creating peak regions... Creating peak regions took 26.0568320751 s Estimating background... Estimating background took 0.255471944809 s Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data... Processing TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam Reading in data...