============================================== 2020-07-17 01:02:33 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-Rep1-GSM1689010.35mers.unique.bam --out GATA1-G1E-Rep1-GSM1689010.35mers.unique.GPS Original read count stats: _IP Bases: 182367 HitCounts: 811652.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. ============================================== 2020-07-17 01:02:40 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-0h-Rep1-GSM1689024.35mers.unique.bam --out TAL1-G1E-ER4-0h-Rep1-GSM1689024.35mers.unique.GPS The genome is segmented into 4768 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 284061 HitCounts: 3224343.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. ============================================== 2020-07-17 01:02:52 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-0h-Rep1-GSM1689011.35mers.unique.bam --out GATA1-G1E-ER4-0h-Rep1-GSM1689011.35mers.unique.GPS ============================================== 2020-07-17 01:02:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam --out GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.GPS ============================================== 2020-07-17 01:02:59 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam --out GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.GPS The genome is segmented into 12996 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 945443 HitCounts: 4261722.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 96685 regions for analysis. --------------------------- Events discovered Significant: 2554 Insignificant: 4520 Filtered: 55 Finish binding event prediction: 18.3s Refine read distribution from 2000 binding events. Running with 1 threads ... Running with 1 threads ... Original read count stats: _IP Bases: 1174497 HitCounts: 5195199.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. Original read count stats: _IP Bases: 1232446 HitCounts: 5566794.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 136714 regions for analysis. Running with 1 threads ... The genome is segmented into 146637 regions for analysis. Running with 1 threads ... ============================================== 2020-07-17 01:03:17 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-Rep1-GSM1689020.35mers.unique.bam --out TAL1-G1E-Rep1-GSM1689020.35mers.unique.GPS --------------------------- Events discovered Significant: 2785 Insignificant: 2696 Filtered: 35 Finish binding event prediction: 17.1s Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 578672 HitCounts: 5102945.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 39821 regions for analysis. Running with 1 threads ... ============================================== 2020-07-17 01:03:29 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam --out GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.GPS --------------------------- Events discovered Significant: 9287 Insignificant: 12264 Filtered: 811 Finish binding event prediction: 41.6s Refine read distribution from 2000 binding events. Running with 1 threads ... ============================================== 2020-07-17 01:03:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-3h-Rep2-GSM1689031.35mers.unique.bam --out TAL1-G1E-ER4-3h-Rep2-GSM1689031.35mers.unique.GPS ============================================== 2020-07-17 01:03:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam --out GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.GPS ============================================== 2020-07-17 01:03:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-3h-Rep2-GSM1689030.35mers.unique.bam --out TAL1-G1E-ER4-3h-Rep2-GSM1689030.35mers.unique.GPS ============================================== 2020-07-17 01:03:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-0h-Rep4-GSM1689027.35mers.unique.bam --out TAL1-G1E-ER4-0h-Rep4-GSM1689027.35mers.unique.GPS ============================================== 2020-07-17 01:03:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-24h-Rep2-GSM1689034.35mers.unique.bam --out TAL1-G1E-ER4-24h-Rep2-GSM1689034.35mers.unique.GPS ============================================== 2020-07-17 01:04:01 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.bam --out TAL1-G1E-ER4-0h-Rep2-GSM1689026.35mers.unique.GPS Original read count stats: _IP Bases: 192764 HitCounts: 639599.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. ============================================== 2020-07-17 01:04:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-Rep2-GSM1689021.35mers.unique.bam --out TAL1-G1E-Rep2-GSM1689021.35mers.unique.GPS Original read count stats: _IP Bases: 381801 HitCounts: 3546757.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. ============================================== 2020-07-17 01:04:02 ============================================== 2020-07-17 01:04:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-Rep4-GSM1689023.35mers.unique.bam --out TAL1-G1E-Rep4-GSM1689023.35mers.unique.GPS Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-Rep2-GSM1689022.35mers.unique.bam --out TAL1-G1E-Rep2-GSM1689022.35mers.unique.GPS The genome is segmented into 25794 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 191240 HitCounts: 1566067.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. Original read count stats: _IP Bases: 607103 HitCounts: 2.1989957E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. ============================================== 2020-07-17 01:04:04 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.bam --out TAL1-G1E-ER4-3h-Rep1-GSM1689029.35mers.unique.GPS Original read count stats: _IP Bases: 836935 HitCounts: 3175359.0 The genome is segmented into 50269 regions for analysis. Running with 1 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 76446 regions for analysis. Original read count stats: _IP Bases: 949585 HitCounts: 3829327.0 Running with 1 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. Original read count stats: _IP Bases: 441382 HitCounts: 4740489.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 9895 regions for analysis. Running with 1 threads ... The genome is segmented into 92435 regions for analysis. The genome is segmented into 29173 regions for analysis. Running with 1 threads ... Running with 1 threads ... Original read count stats: _IP Bases: 603818 HitCounts: 5974673.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 44618 regions for analysis. Running with 1 threads ... The genome is segmented into 9672 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 556378 HitCounts: 5918750.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 42127 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 7778 Insignificant: 7528 Filtered: 341 Finish binding event prediction: 30.2s Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 1465399 HitCounts: 5877868.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 48195 regions for analysis. Running with 1 threads ... ============================================== 2020-07-17 01:04:25 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-0h-Rep2-GSM1689025.35mers.unique.bam --out TAL1-G1E-ER4-0h-Rep2-GSM1689025.35mers.unique.GPS ============================================== 2020-07-17 01:04:25 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam --out GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.GPS ============================================== 2020-07-17 01:04:25 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-24h-Rep1-GSM1689032.35mers.unique.bam --out TAL1-G1E-ER4-24h-Rep1-GSM1689032.35mers.unique.GPS Original read count stats: _IP Bases: 5299726 HitCounts: 1.0688902E7 Original read count stats: _IP Bases: 265191 HitCounts: 2451726.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. ============================================== 2020-07-17 01:04:29 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam --out GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.GPS Original read count stats: _IP Bases: 333328 HitCounts: 3486377.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 5 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 20414 regions for analysis. Running with 1 threads ... The genome is segmented into 340362 regions for analysis. Running with 3 threads ... ============================================== 2020-07-17 01:04:33 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.bam --out TAL1-G1E-ER4-0h-Rep5-GSM1689028.35mers.unique.GPS Original read count stats: _IP Bases: 1230796 HitCounts: 2619692.0 ============================================== 2020-07-17 01:04:35 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam --out GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. ============================================== 2020-07-17 01:04:37 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam --out GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.GPS The genome is segmented into 354854 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 8465 Insignificant: 8151 Filtered: 1050 Finish binding event prediction: 30.5s Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 11808 Insignificant: 21539 Filtered: 3793 Finish binding event prediction: 1.7m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 9442 Insignificant: 1769 Filtered: 921 Finish binding event prediction: 1.3m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 11440 Insignificant: 32860 Filtered: 4449 Finish binding event prediction: 1.6m Refine read distribution from 2000 binding events. Running with 1 threads ... ============================================== 2020-07-17 01:04:46 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1-G1E-ER4-24h-Rep2-GSM1689033.35mers.unique.bam --out TAL1-G1E-ER4-24h-Rep2-GSM1689033.35mers.unique.GPS The genome is segmented into 15892 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 9270 Insignificant: 8799 Filtered: 1236 Finish binding event prediction: 44.5s Refine read distribution from 2000 binding events. Running with 1 threads ... Original read count stats: _IP Bases: 825455 HitCounts: 8436813.0 Original read count stats: _IP Bases: 2161808 HitCounts: 1.6340146E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 74588 regions for analysis. Running with 1 threads ... The genome is segmented into 177016 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 3949 Insignificant: 16171 Filtered: 1930 Finish binding event prediction: 54.2s Refine read distribution from 2000 binding events. Running with 1 threads ... Original read count stats: _IP Bases: 5191457 HitCounts: 8512585.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. Original read count stats: _IP Bases: 5356847 HitCounts: 7146387.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 5 reads. The genome is segmented into 568148 regions for analysis. Running with 1 threads ... The genome is segmented into 327438 regions for analysis. --------------------------- Events discovered Significant: 6403 Insignificant: 4632 Filtered: 304 Finish binding event prediction: 30.2s Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 15845 Insignificant: 35865 Filtered: 6139 Finish binding event prediction: 2.0m Refine read distribution from 2000 binding events. Running with 1 threads ... Original read count stats: _IP Bases: 6615368 HitCounts: 9985327.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 5 reads. --------------------------- Events discovered Significant: 13816 Insignificant: 28808 Filtered: 547 Finish binding event prediction: 37.6s Refine read distribution from 2000 binding events. The genome is segmented into 494015 regions for analysis. --------------------------- Events discovered Significant: 4676 Insignificant: 19314 Filtered: 2053 Finish binding event prediction: 1.3m Refine read distribution from 2000 binding events. Running with 1 threads ... Running with 1 threads ... --------------------------- Events discovered Significant: 6204 Insignificant: 1037 Filtered: 1064 Finish binding event prediction: 57.3s Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 3301 Insignificant: 29116 Filtered: 380 Finish binding event prediction: 33.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6306 Insignificant: 4609 Filtered: 414 Finish binding event prediction: 44.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 8374 Insignificant: 44689 Filtered: 476 Finish binding event prediction: 53.8s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 7549 Insignificant: 1883 Filtered: 1362 Finish binding event prediction: 1.6m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 10151 Insignificant: 3643 Filtered: 1868 Finish binding event prediction: 1.7m --------------------------- Events discovered Significant: 3865 Insignificant: 14701 Filtered: 172 Refine read distribution from 2000 binding events. Finish binding event prediction: 1.2m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 9022 Insignificant: 1850 Filtered: 1464 Finish binding event prediction: 1.8m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 2925 Insignificant: 37699 Filtered: 274 Finish binding event prediction: 35.5s Refine read distribution from 1648 binding events. --------------------------- Events discovered Significant: 8867 Insignificant: 13485 Filtered: 2670 Finish binding event prediction: 1.2m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 11974 Insignificant: 51246 Filtered: 681 Finish binding event prediction: 56.1s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 5891 Insignificant: 3789 Filtered: 273 Finish binding event prediction: 42.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 10217 Insignificant: 6029 Filtered: 1213 Finish binding event prediction: 2.1m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 4505 Insignificant: 10451 Filtered: 174 Finish binding event prediction: 21.3s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 12958 Insignificant: 2910 Filtered: 1237 Finish binding event prediction: 1.4m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 5667 Insignificant: 640 Filtered: 1112 Finish binding event prediction: 2.2m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 13868 Insignificant: 13684 Filtered: 1928 Finish binding event prediction: 1.6m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 3650 Insignificant: 506 Filtered: 523 Finish binding event prediction: 2.0m Refine read distribution from 2000 binding events. Running with 3 threads ... --------------------------- Events discovered Significant: 5864 Insignificant: 30424 Filtered: 210 Finish binding event prediction: 32.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6445 Insignificant: 6057 Filtered: 254 Finish binding event prediction: 58.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 4985 Insignificant: 15523 Filtered: 239 Finish binding event prediction: 52.4s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 9463 Insignificant: 7942 Filtered: 683 Finish binding event prediction: 23.3s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 12072 Insignificant: 3738 Filtered: 2313 Finish binding event prediction: 2.9m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 7563 Insignificant: 96410 Filtered: 8485 Finish binding event prediction: 2.6m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 5034 Insignificant: 20117 Filtered: 395 Finish binding event prediction: 1.3m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 20414 Insignificant: 34430 Filtered: 2123 Finish binding event prediction: 1.2m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 12660 Insignificant: 25173 Filtered: 1016 Finish binding event prediction: 1.1m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 3454 Insignificant: 8391 Filtered: 387 Finish binding event prediction: 2.0m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6155 Insignificant: 15110 Filtered: 257 Finish binding event prediction: 2.0m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 9244 Insignificant: 9229 Filtered: 2184 Finish binding event prediction: 4.6m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 20046 Insignificant: 277772 Filtered: 4806 Finish binding event prediction: 2.5m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6612 Insignificant: 1293 Filtered: 1604 Finish binding event prediction: 4.8m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 14954 Insignificant: 661 Filtered: 3087 Finish binding event prediction: 7.3m Refine read distribution from 2000 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 3436 Insignificant: 151354 Filtered: 2504 Finish binding event prediction: 3.8m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 16636 Insignificant: 69658 Filtered: 1906 Finish binding event prediction: 4.1m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 31496 Insignificant: 20216 Filtered: 45 Finish binding event prediction: 2.7m Refine read distribution from 2000 binding events.