INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-3h-Rep2-GSM1689016-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 2.91922497749 s
Creating peak regions... Creating peak regions took 47.4814090729 s
Estimating background... Estimating background took 15.3192350864 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 3.32081007957 s
Creating peak regions... Creating peak regions took 42.4349598885 s
Estimating background... Estimating background took 19.7690320015 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 3.13724994659 s
Creating peak regions... Creating peak regions took 42.5077021122 s
Estimating background... Estimating background took 18.189645052 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 2.86100101471 s
Creating peak regions... Creating peak regions took 42.0252029896 s
Estimating background... Estimating background took 16.4285168648 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 3.15759205818 s
Creating peak regions... Creating peak regions took 43.6910290718 s
Estimating background... Estimating background took 18.5592088699 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 2.71770000458 s
Creating peak regions... Creating peak regions took 38.7034749985 s
Estimating background... Estimating background took 14.4127328396 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 2.42551612854 s
Creating peak regions... Creating peak regions took 34.1894009113 s
Estimating background... Estimating background took 12.8688781261 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 2.24179601669 s
Creating peak regions... Creating peak regions took 34.7561430931 s
Estimating background... Estimating background took 13.504693985 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 2.08820295334 s
Creating peak regions... Creating peak regions took 31.6345341206 s
Estimating background... Estimating background took 11.832267046 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 1.71768188477 s
Creating peak regions... Creating peak regions took 21.7476050854 s
Estimating background... Estimating background took 9.43059897423 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689016.35mers.unique.bam
Reading in data... Reading data took 5.87761712074 s
Creating peak regions... Creating peak regions took 71.0020158291 s
Estimating background...